LOCUS       DBBXRO010000001        36587 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.001, whole genome shotgun sequence.
ACCESSION   DBBXRO010000001 DBBXRO010000000
VERSION     DBBXRO010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 36587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36587
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.001"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            12..1808
                     /gene="lepA"
                     /locus_tag="ACJFEZ_000001"
     CDS             12..1808
                     /gene="lepA"
                     /locus_tag="ACJFEZ_000001"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HGG0916159.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTEKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            1899..2543
                     /gene="mapA"
                     /locus_tag="ACJFEZ_000002"
     CDS             1899..2543
                     /gene="mapA"
                     /locus_tag="ACJFEZ_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein MapA"
                     /protein_id="HGG0916160.1"
                     /translation="MNKKILFFIALALFLNACASKQNTFTQVNQLSKASQCVPCESSS
                     GFEAKIKGLLYVSDIGIQCCANKRTLDTGAALKKVYLHRFYDLKEEQKVLNANGQKLF
                     VNLDFNAIFYVYLKQELEARGIIVLDDNKANSPYVTKIDLAFTGYSAKQDSLGLHSRL
                     VGVLSLSDINKNKKFTLRTKQDVQGFENLKDISFYTHLLIKQMANKAASIISEL"
     gene            2540..3115
                     /locus_tag="ACJFEZ_000003"
     CDS             2540..3115
                     /locus_tag="ACJFEZ_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HGG0916161.1"
                     /translation="MKCLNCGVFTLLCFCHHCAEELSEFSLGVRELEKDFKVYSFYKY
                     HEIKHLLHAKHKFYGYFVFHFLAKLSFFKFKNFFSVNEQINVIPLDDRVENLLYSHSA
                     ILAKYLKTEFIKPIFGALHAQNHLKYSGKSLKFRQDNKRKFKLLKKINNPVILVDDIV
                     SSGSSLLEAKQFLEKNKISVLFAVVLADAKV"
     gene            3155..5722
                     /gene="gyrA"
                     /locus_tag="ACJFEZ_000004"
     CDS             3155..5722
                     /gene="gyrA"
                     /locus_tag="ACJFEZ_000004"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HGG0916162.1"
                     /translation="MENIFNKDSDIELIDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMR
                     YPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPD
                     VLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEKKSNKDIIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLDEILKSETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENL
                     IESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDE
                     QEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELISVVIVDESMDLMALT
                     SSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEELEDEISDENLDLNL"
     gene            5790..6311
                     /gene="flgP"
                     /locus_tag="ACJFEZ_000005"
     CDS             5790..6311
                     /gene="flgP"
                     /locus_tag="ACJFEZ_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HGG0916163.1"
                     /translation="MKKFYFMLIIAGIFAGCTASTNSTTAKNPNSPSTSAQASDIVVQ
                     KVDKDDVRDIIREEKMLAPDVSESELSFSAVGEGIAPLNTVSSAQALALAKRAAITDA
                     YRQLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNVEL
                     KIDADKWKELFAY"
     gene            6287..6736
                     /locus_tag="ACJFEZ_000006"
     CDS             6287..6736
                     /locus_tag="ACJFEZ_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916164.1"
                     /translation="MERIVCLLIFFSFKLIAQDEFIFWAELSNKNLILFHQSQNLSPA
                     MTRSENTISEFACEISYTDDDLKKLPRTELGMIDDDMSKAIKFDFLNAHKDELSDCFM
                     GARISVKDIVKTDLLKAQNETYVKILPLRFSVEFGERNALIYYLKKK"
     gene            6785..8083
                     /locus_tag="ACJFEZ_000007"
     CDS             6785..8083
                     /locus_tag="ACJFEZ_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HGG0916165.1"
                     /translation="MNLVIVEDDINMRKSLEIALGEYEEFQIKSYKSATEALKKIDSD
                     TDLIITDINMPGIDGLEFIKACENKYDFIIMTGNATLNRAIEAVRLGVKDFLTKPFDI
                     ETLVEAIKRAKVIREKTADKKIKKQEEKQENGFFSSSDKLEQVLSLSQKAAKTDASVM
                     LFGESGVGKEVFSRFIHQNSKRSQKPFVAINMAAIPSNLIESELFGFEKGAFTDANAT
                     KIGLFEMANNGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISATN
                     ANLQDKIDNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLENTCKEYELEMKK
                     ISQEAQKALLEYNFPGNIRELISIVQRACILSEGLEISEQDLFLEARSVKKDVKNLEK
                     ELLEQILEQCEFDKEKASNELGMSIENLNNKIKQYKIKEK"
     gene            8083..9114
                     /locus_tag="ACJFEZ_000008"
     CDS             8083..9114
                     /locus_tag="ACJFEZ_000008"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HGG0916166.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSAG
                     NQIEFRGKSYTIKELTEDVFRENPVDIAFFSAGGSVSEKYAKFAVEAGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKEWKKTGIIANPNCSTIQMVHILKPLNDAFDLKRVDVSTY
                     QAASGAGKEGMEELVRAMQSFFAFKLDEFEAQTFPHTLALNLIPQIDVFMDNGYTKEE
                     LKMINETQKILHKNLEISATCVRVPVLRSHSEAITMHFAKEVDVNKARDILQNAPSVV
                     VIDEPKDKKYPMPLMTSDTNETYVGRIRLDVTHKNILHLWCVADQIRVGAATNAVRIA
                     QKWLELENK"
     gene            9128..9634
                     /locus_tag="ACJFEZ_000009"
     CDS             9128..9634
                     /locus_tag="ACJFEZ_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HGG0916167.1"
                     /translation="MLEKIFESLLVKSRIVTILPVIFGLVGAFVLFFIASYDVLKVIL
                     YTYQYFFSAGIKIDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPTDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            9688..9888
                     /locus_tag="ACJFEZ_000010"
     CDS             9688..9888
                     /locus_tag="ACJFEZ_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HGG0916168.1"
                     /translation="MKKLFLILLAVINVLTFSYAAPLDEVFKDVEVSGVVRYRYETQR
                     VKKTDNKNKKHNVTNRTEITIK"
     gene            9898..10329
                     /locus_tag="ACJFEZ_000011"
     CDS             9898..10329
                     /locus_tag="ACJFEZ_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0916169.1"
                     /translation="MFRYLTIFSIFVVALFGINLKSFFTYTFDANKQYDMVQAKDLYF
                     KNKCNTCHGDNAEKSVAGSRVLKDMSPEDIKAALVGYTLDGSTSANASQMAFYARNLS
                     HDDMDNIIAYIKGGNFAVDLQVKDLLEEEPPQKTKHNTFLK"
     gene            10365..11489
                     /locus_tag="ACJFEZ_000012"
     CDS             10365..11489
                     /locus_tag="ACJFEZ_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0916170.1"
                     /translation="MKKVTLVFSALALANCLYAKTINLGVVLPLTGPVAAYGQDVFNG
                     IELANKLNAKLDNGDEVKLIVIDTKGDKLETTSAVNRLIAQDKVIGIIGEATTPNTIQ
                     AISIVEDKKIPLIAPVASGDKLLEGKKYASRVCFSDSFQGDKFASYVTKELNLKNAVV
                     IIDQSNVYSLGLAKAFEKSLKENGGKVIKKLAISSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQAKQIGFDKLLAAGDGVNNQTFIDLGSTAVNGVVFTDSFDSSNPSTA
                     RGKTFINEYEKIKGNANLPAFSAMGADAYYVMLNAMNACQNTLTSECINEKIHQTSNY
                     EGVGGIISIDASGNAIRPVVIKEIQDGKQVYKTLINPKEK"
     gene            11489..12598
                     /locus_tag="ACJFEZ_000013"
     CDS             11489..12598
                     /locus_tag="ACJFEZ_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0916171.1"
                     /translation="MKKKIILAAALALSLQAKEVNLGVVLPLSGATAAYGQSALEGIK
                     LANEMQSTLANGDKINLVVLDTKGDKIESASAATRLVNQDKVLGLIGEMVTANTLQVM
                     RIAEENKVPLIAPAATGDKLLENKLYSSRVCFMDSFQGSSLAKYAFEKLNHKKAVIVV
                     DQSTDYSLGLAKAFEKEFKAKGGEILKTLRVNSGDKDFKAIATQIKILNPDFIFLPLY
                     YSEASLFVRQAKLIGLNTPMGSADGVADATFIKLAGNASEGYIFTDSFDANNPTTQLS
                     KDFIAKYAKENQSKEVPNFTAMGADAYFVMFNAMNACQNTLTSECINEKIHQTNNYEG
                     VSGVISIDKSGNATRSVVVKEIKNQKQTYKDTINP"
     gene            12606..13565
                     /locus_tag="ACJFEZ_000014"
     CDS             12606..13565
                     /locus_tag="ACJFEZ_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HGG0916172.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYIALLLINFFSPIINHLNQTFFGSDELGKYLVVIFAAALVASMIFSSIVGILI
                     DKIAYKPLRKAPRISLLITAIGISFFLQNLFNVIFTSTEQQFPAPPIFETLVSIGGVS
                     TTLGSLLVPLVTLVVMLGVLFILYKSKYGIAIRALAFDIQTVNLMGINANRIIAIVFA
                     LGSALAALAGIFWSSNYYSAYPTMGTLVGLKAFAAAVLGGIGSVVGAVLGGLIIGLTE
                     VMAVAFFPELSGFKDAFAFIFLVFILLFRPTGILGINFEKSRF"
     gene            13568..14608
                     /locus_tag="ACJFEZ_000015"
     CDS             13568..14608
                     /locus_tag="ACJFEZ_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HGG0916173.1"
                     /translation="MVKIKISALVYIVLAIAFIMLAPQFFDGYGIGILNQIAIYITLA
                     VSYNLINGVTGQFSLEPNGFIAVGAYAAALVLLSSEQKLDLFSLEDPNPIILALHTNS
                     FILALLVAGFSACVLSLILAFAVFRVRGDYLAIVTLGFGIIIQKLAINFPSWTNGSMG
                     LNGIPLLSNLYWTGGVAIISVILILNLVYSKFGRAMQAIRDDEDAASAMGVNTFWTKT
                     LAFGTSAFLEGVGGGLLVCLLASVSPEQFGFEFTFMLLIIIVLGGLGSTTGAILGAIL
                     IIGGREWLRFLDEMQIKIDFLGIDMGSMPGLRMVVFSLILILVMLFARRGIFGDRELN
                     SFFKRPSKKGLK"
     gene            14608..15378
                     /locus_tag="ACJFEZ_000016"
     CDS             14608..15378
                     /locus_tag="ACJFEZ_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0916174.1"
                     /translation="MILELKNITKKFGEVRAINETSFHIKEGEIFALIGPNGAGKTTL
                     FNIITGNYKPTSGEVFFQNKKINDLKPHKIVHLGIARTFQNIRLFSSMSVLENVMIGF
                     DKQMKYSVLEAFLHLGRFHRVEQEFKNKAYKLLEELGISEFADEKATSLSYGQQRKVE
                     IARAMATNPKLLLLDEPAAGMNSSESDELAELILKLRKDYKISVLLIEHDMKFVNRLC
                     DKVLVLDYGKTIFEGKISDAVNHKEVIAAYLGDFDASS"
     gene            15365..16060
                     /locus_tag="ACJFEZ_000017"
     CDS             15365..16060
                     /locus_tag="ACJFEZ_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0916175.1"
                     /translation="MLVVKNLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNAVKRTGEINFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAYN
                     NSENYEHLREQMYKLFPRLASKKHAMAGNLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGLIAMQGEAKKL
                     IGDDNIRKKYLGL"
     gene            16076..19336
                     /gene="ccsB"
                     /locus_tag="ACJFEZ_000018"
     CDS             16076..19336
                     /gene="ccsB"
                     /locus_tag="ACJFEZ_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HGG0916176.1"
                     /translation="MKNIIKSVGDLRISIVLFLLFALSCGLATFIESAYGTPTAWAMV
                     YDSFWFEYIQLLLGINLLFGMFRYKMFALKKMPLMIFHFSFLFILLGSAITRYGGFEG
                     LLAIREHTQNALVESSKTSLRISTIKDGERYTSVNDRYIGNLPFANSFKLNLNMGDEK
                     AVLKYENLILDADYTYKEDNVSSPLLVLTISEKNSQGANLEFRSGEVQNINGINFAFM
                     NDDVAKPYIKIDKNLKLSSSENLSVFNMKKGENSTLKIGEKADAKDLRLYSLDNLNFV
                     VKFASLHGAQEIQGVNRPQDESFWLWFKSAWLEFARTIMISSFGEPQNWKASWLTNFK
                     DFAMSKDYQALELKGRHALKLQLEYKNESKEFYVFEYNKPTVVELAGQKFFISWALAY
                     EQLPFEIYLRDFVIDRYPGSMSPASYASEITVKNNEDNFDYRIFMNNVLDYKGYRFYQ
                     SSYDQDEKGTILSVNKDPGKIPTYIGYFLLCLGMFLNFLNPHSRFRTLARLINKDALK
                     HTASVLALFVALFGADKMLAQDLNISLEQNIPIVDKAHVKELKALIVQKSVDGRMIPF
                     DTLAREILEKIHKSADYKGQEASAIMLSMLINVDLWQNEAFILMPSNKNVREAIAEIL
                     EISPELKYVKYKDFFDANNRYKLQKYVENANRKNPNARGVFDKEIIYLDERANVVNLV
                     FSGELFKFIPIQNHDNNAWLAPFSAITTLKDEEGQFVFTLIKNYFSSVDSAFHDGNWT
                     RANEALGFIKQYQEKIGHEVMPNKTKVEMEIFSNKAEIFVKLAPIYLIAGFLLLIVLL
                     IKMVAPKLKISLIFKVIYILNILAFIVHTVGLGLRAYLADHAPWSNGYESMVYIAWAL
                     SLSGIFFSRKSPIALSLTSILAGIVLAVAHLSEMNPQITNLMPVLNSYWLSIHVSVIT
                     ASYGFLGLCSLLGIFTLLLMCFLKENNQYNQSILRNITEATRINEMSMIFGLCLLTVG
                     NFLGAIWANESWGRYWSWDPKETWALVSILVYAAILHIRMIPKYSNQFTFALWSMFAY
                     WVVIMTYFGVNYFLVGLHSYAAGEAAQIPSYVYWGVVIMIVLALLARRKREFVGKL"
     gene            19336..19791
                     /locus_tag="ACJFEZ_000019"
     CDS             19336..19791
                     /locus_tag="ACJFEZ_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916177.1"
                     /translation="MSHIFWVIICTSGALLLFLSLIAYLILSDNKKKNKKQKNTENTA
                     KARKFDNDLNKMIVAASDLKYSDRDLKELVKLFVQTHKLGSKTSKELDEKTKNKLEFV
                     SALAANPKASPQTVSFLNQELKKISASYKKEIDAYEQMGLAKRKIKEEK"
     gene            19957..20097
                     /locus_tag="ACJFEZ_000020"
     CDS             19957..20097
                     /locus_tag="ACJFEZ_000020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916178.1"
                     /translation="MQDASRKYLVVLHTMINYSVESYGLFGDEREVGSFTSVGHKGVD
                     GG"
     gene            20167..20337
                     /locus_tag="ACJFEZ_000021"
     CDS             20167..20337
                     /locus_tag="ACJFEZ_000021"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916179.1"
                     /translation="MRFYKMLLALILSTNLANAYDTTIIYNEDKPIFKLDFYNKGENT
                     VFLVKLLPLPIL"
     gene            20508..20657
                     /locus_tag="ACJFEZ_000022"
     CDS             20508..20657
                     /locus_tag="ACJFEZ_000022"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916180.1"
                     /translation="MQGESIDTIRQELIGVSEDFFTKASVEYLGHINMGKLDWYIAFS
                     SYYPT"
     gene            20751..23429
                     /locus_tag="ACJFEZ_000023"
     CDS             20751..23429
                     /locus_tag="ACJFEZ_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HGG0916181.1"
                     /translation="MGQCFNGFLNSFSDHLYDLNGVKAQIGMRIVKTQAEVEEAKLKG
                     ETVFLVKDDGVYINGSFSNASGNVYFKGENVAEVIKNAKLGYDGVNGIPINAWEGIIL
                     DMSHIELDNSLMSHQSWRNYNFYMEAELALLQDIGYNFDRKLYYGDSIYESNLLNWQS
                     DHGYYARKDGKWLIGEYNPTEYGVGLHIYGKNNIATQSHDILSSSVAASGIRIDGSNN
                     QLIIANDTKVHTLGDYSNALLIAYGKDHVIEHNGELKATGKEGIVINIDFGDNTLGNA
                     EEYRGSYMHQMSGNNQDDLAEYNLDGALVKSLNLNTASSTIGSLASIYIADNAYVNTI
                     NIAQWAKVEGDIISNWDPNNEKLANQYKDSFYTDLNFGSDSSLSRVAFNALDNTWSVK
                     ANVLGYDNFKMNVNENLNLQGSAFVYDLNNKAHFSLLGADGINPSLLYIKNNFTQDSN
                     AILTAGINANGQSLVYVGGNANLAGAFNFYMLKDFYKDKVVLDPDLISANQIQGAFNS
                     IVYDSSLDFSPTLNFIYDANTKELGVVRDYTPYIKNSSDISLAYALNSLAQNGKYEDI
                     ALLFKELDFATDAQTIAQGLNELNAKAYLDSAKISLDFQEELNKEALSEYANEWQSFV
                     TPFGTYQSSRANGDFDAYKGYGGGVKAKAIKGFDSFNLGFNLVLNTNNIDIDDTLANT
                     KTTGAYAGIFSKYDLEDFYLLGSFRMGYEHTKLNRNVNIGAFSANYNSKFNSYLISEM
                     VGIGKSFNHYGVSYGPLAYIEHSFLHHFAINEENQNSTALNIDSKNFHALNSFMGFNV
                     NYEKGMSDKAIVNFYFLGGWNHYFLDSLKNNASFKDASLNKFYTKSKLSNQDSLYLQG
                     EIDFTHNQSFFTRLMLSSDIKDNIDFSTKLEVGAKF"
     gene            complement(23935..24011)
                     /locus_tag="ACJFEZ_000024"
     tRNA            complement(23935..24011)
                     /locus_tag="ACJFEZ_000024"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23975..23977),aa:Arg,seq:gcg)
     gene            complement(24066..24836)
                     /locus_tag="ACJFEZ_000025"
     CDS             complement(24066..24836)
                     /locus_tag="ACJFEZ_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HGG0916182.1"
                     /translation="MVCDENLSKFLANKNLNTLYMDFLGQKILILNSYSSKTKKANFS
                     VFGFEDDTIFKLENAQFKPFSLNDFLSTIRAILEDCKNENAYFERILERKENILLKGN
                     LIKNFFKKSFILKQKINKNLKNLSLLDEALNLLAGTSPHKKALKPIIFAVGVTLKNNK
                     EIITRLNELHLLMSAIKNEKMNQSLYFLSILSAIFLPLNLIVGFFGMNTNDLFLSNVK
                     HATWYVFALICFILLSGLIVYRKKRKKELEFEDKILNK"
     gene            complement(24823..25956)
                     /gene="tgt"
                     /locus_tag="ACJFEZ_000026"
     CDS             complement(24823..25956)
                     /gene="tgt"
                     /locus_tag="ACJFEZ_000026"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HGG0916183.1"
                     /translation="MEFKLKHKDNLARVCEITTAHSTFETPMFMPVGTVGAVKSLDAI
                     DLKEQLNAKIILANTYHMYLRPGSKIVKHFGGLHGFTKFDRSFLTDSGGFQAFSLSAN
                     SKHFQEGIEFKSHIDGSKHLFTPKSVLDTQYDLNSDIMMILDDLIALPATKERIKVSV
                     DRTIKWAKEAIDYHKQMQIQGLGLKQNIFGIIQGGTDYEERKRCALALNEMDFDGLAI
                     GGLSVGEENALMYETVENLNPFLDENRPRYLMGVGTPEDLVENIERGVDMFDCVMPTR
                     NARNGTFFTNFGKFNIKRAEFINDHESIDNECSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLTLVAQAREAIKKSEFKKFKYEFYAKRLTNGMR"
     gene            25986..27386
                     /locus_tag="ACJFEZ_000027"
     CDS             25986..27386
                     /locus_tag="ACJFEZ_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HGG0916184.1"
                     /translation="MNHILIIIDGILAKHFLERLCFEKGLGYFFTIVCQNEENINLGA
                     NSEYIEFHHFDPTSTARLETLMNKSFKQAFIYMQDEFETKKTYEALRSLDANLEIEIM
                     DFWGLNINDVHTNLADARMTLSRRFMDFLPDIALTAYCVGLGVGEVMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLQPNDSILIVGDPAVLQSIFHNIRGKA
                     GQFPLPFGSNIFTLIDMKKMSEDTQERLLDTTLQLVKKSNAKKFFIRVLNPKLGALYD
                     KMKQLSDEQESIFFDFFNTDFANLNSFLENNDIGIILTDFKHFEQEKKTFFELKIPIL
                     KIGEGKFENIQNAVILSTNETELENNANVITDLSKQLDFDITLYYYNPNLQNTTDMEE
                     YFGSLSKLYDKNIQIISKNDENPILSLSYRADLLQFVSFEKELLEGEFSKSLSTNLNR
                     HYSKMRQNYQLFIPVE"
     gene            27553..28608
                     /gene="aroB"
                     /locus_tag="ACJFEZ_000028"
     CDS             27553..28608
                     /gene="aroB"
                     /locus_tag="ACJFEZ_000028"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HGG0916185.1"
                     /translation="MQINVDLKENAYKVYIDELDNLELDTKVFILSNPKISGLHLKTL
                     LSKIKAKELFIATIEDGEEYKNLLTLEKILNQMFNSKLNRKSILISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNAFGKNLIGTFYQPKAVYCESEFLR
                     TLGRRELAAGMAEFIKMAAMFDRDLLEFIEAIDKESFLNATCENEIFTQIISKSVELK
                     ARVVECDEKESGLRMLLNYGHTFAHVIENFTDYKQYLHGEAVAIGMNMANRLALKLGL
                     LSKEECERIEKILLQFNLPTHYKIENINEFYEAFFMDKKSANQKLNFILANSLGKGLI
                     KGDIAKEMILETLEEFQ"
     gene            28605..30176
                     /locus_tag="ACJFEZ_000029"
     CDS             28605..30176
                     /locus_tag="ACJFEZ_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HGG0916186.1"
                     /translation="MRKILLLLCFSLFAFGDINRTIINNINEKISNLDTVIGASIWDV
                     RYENFIKYQDINDELIILNLELKKIEDVHLQDELKRKIATLEEQLNVLKEYKELNFAH
                     SLSAPEDIETLSKLTNPFAIIGAFSHIKKLRGEKEEYAFKFNDFKNLVEKIREKNLEL
                     KELVNLESNIENIEALKASDKKLEEFDQALKFASVSYSVYEKKIDDEIARVSAEIKAQ
                     GLRAINIVIAIVIVVAIAFMLKLVAKKYIKDNERYYTATKIINFINLNIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIVFGGSFRVGDRVKVFQNDTTYVG
                     DIIDISFLRITLYEDITLETYSKNRRAGRIVFIPNNYVFTNLISNYTHHGMKTILDGI
                     DISVTFDSNIEKAQAIVEEVVNRLAKGYTELAKKTMKRLQNEYSIRNPKVEPRFFVFF
                     EHWGMRISAWYMTNSYAALILRSAISKEIIKEFNKHEDIKIAYPSQNLYLGNLNQAPF
                     ETHYNSMHFHTKDNN"
     gene            30173..31429
                     /gene="mtaB"
                     /locus_tag="ACJFEZ_000030"
     CDS             30173..31429
                     /gene="mtaB"
                     /locus_tag="ACJFEZ_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0061712 - tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HGG0916187.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIVNDEEKAQIIVVN
                     SCTVTNGADSGIKSYINSMQKKGVRVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGLKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEQALLRQVEILGANGYSEVVLTGTNIGSYGLKNGTTLGKLLQKMGQISGIKRIRL
                     GSLEPAQIDESFLEILDERWMERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVGHPGETEELWHEALKHFQEFPLTHIHAFIFSPRNNTHSATMKDTING
                     AVAKERLNTLKVIIENNNYEFRKRVKTPLEILVENQKDGFFEGYDQFFNKIKIKSSKD
                     IAKEWLKLERYEVQEKHNFADLEGKK"
     gene            31426..33030
                     /locus_tag="ACJFEZ_000031"
     CDS             31426..33030
                     /locus_tag="ACJFEZ_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HGG0916188.1"
                     /translation="MKNKKIILISFLILCLLFGILYFKNEPKYIDENLYQSLLSQNLI
                     EKAVIDKDEIWLKAKGESYVIVKDGVDIKTLLSKVPVEIKKDSTLWVFFVIFVFLIAL
                     LLSFVYFARKKELAKYPISSKTQTQTSTTNLESSNIKPVISNITFNDVAGVSEVKMEL
                     SELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFV
                     EIYVGMGAKRVRELFSRAKMMAPSIIFIDEIDAVGKARGEMSNVERDSTLNQLLTQMD
                     GFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKGKNNN
                     IDLNKIAKASVGFSGAGLETLVNEAAINALRRNSSLVEESDFYAVLNKVLLGKKKILS
                     FNDEEKGIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHAIRSKSELINRIKVYL
                     AGSRAMSLIYNESYTNSQNDFLKVKELLDYMISFGMLEEPNLNEIKRELDEFLFPLKE
                     KISTLAKILLEKEKIEYNDVKEVVQV"
     gene            complement(33085..33501)
                     /locus_tag="ACJFEZ_000032"
     CDS             complement(33085..33501)
                     /locus_tag="ACJFEZ_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HGG0916189.1"
                     /translation="MKIKFYGIIAILSTFLNADIIISPDELPSISKEFLKNNFQAPIG
                     IVQRDKHAYEVYLSDGTELEFESDGSWKEIESKVFPFDLNFLPPNLTNIIQNKFPNTK
                     AREIERKINYYKIKLTNNIEVHIDFNGTILYTEYDD"
     gene            33601..34119
                     /locus_tag="ACJFEZ_000033"
     CDS             33601..34119
                     /locus_tag="ACJFEZ_000033"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HGG0916190.1"
                     /translation="MVVILLILLNILFYFTIPYGYYNLLGLNILFFKGAYWQILSSMF
                     MHGNLTHLILNMIVLFQFGRILESYLGALRFFLLYIIGGLMCSLLSAFYVYFSFYYFG
                     GMINLVGASGAICVLMGYYAFLDKSSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFI
                     CGYFLGKLRRKI"
     gene            34116..34625
                     /locus_tag="ACJFEZ_000034"
     CDS             34116..34625
                     /locus_tag="ACJFEZ_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HGG0916191.1"
                     /translation="MKKIYILRHAKAVKDEEVQDFDRKLNKRGKEDLEKLFYNLKTHA
                     IKFDFILSSPSKRTAKTAKKIAEFYNFDKEKIQFIDELYLANLSKIYQILQTIDKKYN
                     EVLLVGHNPTLMELGEFLGSLCLTSFPTSSMLCLEFDIEDFKDLKAHSGKVIFFEHVR
                     KLKEEKELD"
     gene            complement(34626..36491)
                     /gene="rpoD"
                     /locus_tag="ACJFEZ_000035"
     CDS             complement(34626..36491)
                     /gene="rpoD"
                     /locus_tag="ACJFEZ_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HGG0916192.1"
                     /translation="MNAKTQDMELEELFKENEKDYITYEKLVKYFSKQPNSATAKKVQ
                     TLMKKYKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYREPLI
                     NRERRVKELFKSFDDEEKNDDKLDELEDEDEENDEELENEEETPKKTSKKEDERTLKV
                     IEKFKALEKAKKDWLKVSKDKESGDEILDKLGIAFKKNILKEKLMDLGPTSKLISEIV
                     KSMETALKSDEEFDKELKRLEYRLPMFSEELKNRHANILKDITKLSKEEITERALETT
                     MVSTYMEIKKLFQTKEASEKSFDLEKERLKEILEQIKRGKKISDEAKTRMAKSNLRLV
                     VSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIAD
                     QARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITKE
                     PISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIRM
                     RFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
BASE COUNT        12453 a         4790 c         6737 g        12607 t
ORIGIN      
        1 aggatgaaat tttgtcggta aaaaatatta gaaatttttc catcatagca catatagatc
       61 atggaaaatc tactcttgca gataggatta ttagcgagtg tggtgctatt agcgataggc
      121 agatgagttc acaagttatg gatactatgg atatagaaaa agagcgtggt atcaccataa
      181 aagcacaatc agtgcgttta aattataaat ttaataatga aaattttgtt ttaaatctta
      241 ttgatactcc tggccatgtg gatttttctt atgaagtgag tcgttctttg gcaagttgtg
      301 aaggggcttt gcttgtagta gatgcttctc aaggtgttga agcacagact atagctaatg
      361 tttatatagc gcttgaaaat aatcttgaaa tcattcctgt gattaataaa atcgatttgc
      421 ctaatgctga tgttgagaaa gtaaagcatg aaatcgagca tattataggt atagattgca
      481 aagatgcaat ttgcgtgagt gcaaaaacag gagtgggtat aaaagagctt atagaaacaa
      541 ttattactaa aatccctgca ccaaaaacag atgatgaagc tcctactaag gctttaattt
      601 atgattcttg gtttgataat tatctagggg ctttggcttt ggttagaatt tatgaaggaa
      661 gcattgctaa aaatgatgaa gttttggtaa tgagtacaga aaaaaaacat atagttcaag
      721 atctttttta tcctcatccc ttaagtccta tcaaaactca atccttgcaa tcaggcgaag
      781 taggggttgt agtgcttggg cttaaaacag taggtgatgt gcaagtgggc gatactatca
      841 ccttagtaaa aaacaaagcc aaagaagcca tagggggatt tgaaaaggct aaagcttttg
      901 tatttgcagg actttatcct atagaaacgg ataaatttga agacttaaga gatgctttgg
      961 ataaattaaa gcttaatgat agctccatca cttatgagcc tgaaacctct ttagctttag
     1021 gttttggttt tagggtagga tttttagggc ttttacatat ggaagtaatt aaagaaagac
     1081 ttgaaagaga atttaatctt gatttaatcg ccacagcacc aactgtaact tatgagattt
     1141 atcaaaccga tggagagctt ataaaaattc aaaatccaag cgaattaccg ccggtgaata
     1201 agatcgatca tatcaaagag ccttatgtaa aagctactat cattacccct agtgaatttt
     1261 taggaaattt aatcactctt ttaaatcgaa aaagaggagt gcaggttaag atggactata
     1321 ttacacctga gcgtgtttta ttggaatacg atgtgccttt aaatgagatt gtgatggatt
     1381 tttatgataa attaaagtct ttaacaaaag gatatgcgag ctttgattat gagcctattg
     1441 aatttcgtgt aggggattta gtaaagcttg atattaaagt agcgggtgaa aatgtcgatg
     1501 ctttaagtat tatcgtgcca aatgaaaaag cgcaaagtaa aggaagagaa cttgttagtg
     1561 ctatgaagga aatagttcct agacagcttt ttgaagtggc cattcaagca agcataggca
     1621 ataaaatcat cgcaagagaa acggttaagt ctatgggtaa aaatgtaacc gcaaaatgct
     1681 atggtgggga tattactaga aaaagaaagc ttttagaaaa gcaaaaagaa ggtaaaaaaa
     1741 gaatgaaagc tataggtaag gtaaatttac ctcaagaggc ttttttgagt gttttaaaga
     1801 tagattgatg ataaatttaa aacttggctt gaaatttgct tgtattttta atacaattta
     1861 gaaaaatatt tttcaaaata ttttttaagg agaaaaagat gaataagaaa attttatttt
     1921 ttatagcatt ggctttattt ttaaatgctt gtgcgagcaa acaaaatact tttactcaag
     1981 taaatcagct ttctaaagct tctcagtgtg ttccttgcga gagttctagt ggttttgagg
     2041 caaaaatcaa aggcctttta tatgttagcg atattgggat acaatgttgt gcaaataaaa
     2101 gaactttaga tacgggtgcg gctctcaaaa aagtctactt gcatagattt tatgatttaa
     2161 aagaagagca aaaagtgctt aatgccaatg ggcaaaaatt atttgtaaat cttgatttta
     2221 atgctatttt ttatgtttat ttaaaacaag agcttgaagc aagaggtatt atcgtccttg
     2281 atgacaataa agccaattca ccttatgtaa ctaaaattga tcttgctttt acgggttata
     2341 gtgcaaaaca agatagtcta ggacttcatt caagacttgt tggagtatta agcttgagtg
     2401 atattaataa aaataaaaaa ttcactttac gcaccaaaca agatgttcaa ggttttgaaa
     2461 atttaaaaga tatcagtttt tacacacatt tactgattaa acagatggca aataaagcag
     2521 caagcataat ctcagagctt tgaaatgttt aaattgcgga gtttttactc tgctttgttt
     2581 ttgtcatcat tgcgctgaag aattatcgga attttcttta ggcgtaagag aacttgaaaa
     2641 agattttaaa gtttattctt tttataaata tcatgagatt aaacatcttt tgcacgctaa
     2701 acataaattt tatggttatt ttgtatttca tttcttggca aaattaagtt tttttaaatt
     2761 taaaaatttt ttttctgtaa atgagcaaat taatgttatt cctttagatg atagagttga
     2821 aaatttactt tattctcatt cagccatctt agcaaaatat ttaaagacag aatttattaa
     2881 gcctatattt ggtgccttac atgcacaaaa tcatctaaag tattctggaa aaagtttaaa
     2941 atttagacaa gacaataaaa gaaaatttaa acttttaaaa aaaattaaca atcctgtaat
     3001 tttggtagat gatattgtat cttcgggttc tagtttactt gaagctaagc aatttttaga
     3061 aaaaaataaa atttctgttc tttttgcggt tgttttagct gatgcaaaag tttaatatgc
     3121 tataataata gtttgaaatt gcgaaggaaa attgatggag aatattttta ataaagattc
     3181 tgatattgaa cttatagata tagaaaattc tattaaaagt agttatttag attattctat
     3241 gagcgttatt atcggtcgtg cacttcctga tgctagagat ggcttaaagc ctgttcacag
     3301 aagaatactt tatgctatga atgatcttgg cgtaggaagt agaagtgcat ataaaaaatc
     3361 tgctcgtata gtaggggatg ttatcggtaa gtatcatcca catggcgata ttgctgttta
     3421 cgatgcctta gtaagaatgg cacaagattt ctctatgcgt tatccaagta tcgatggaca
     3481 aggaaacttt ggttctatcg atggtgatgg cgctgctgca atgcgttata ctgaagctag
     3541 aatgacaatt ttagcagaag agcttttacg cgatatagat aaagatacgg tagattttgt
     3601 tccaaactac gatgattcta tgagtgagcc cgatgtttta cctgctaggg tgccaaattt
     3661 attattaaat ggctctagtg gtattgctgt aggtatggcg acaaatattc ctccgcatag
     3721 tcttaacgag cttgtagatg gacttttgta tttgcttgat cataaggatg ctagtttaga
     3781 agatttgatg caatttatca aaggtcctga tttcccaacg ggtgggataa tttatggcaa
     3841 aaaaggcatt atcgaagctt atcgcacagg gcgtggtaga gtaaaaataa gagctaaaac
     3901 tcacatagaa aaaaaatcca ataaagacat tatcgttata gatgaacttc catatcagac
     3961 taataaagca agactcatag aacaaattgc agagcttgta aaagaaaagc aaatcgaagg
     4021 aatttcagaa gttagagatg agagtgatag agaaggaatt cgtgttgtaa tcgaactcaa
     4081 gcgtgaggcg atgagtgaga tagtgcttaa taatcttttt aaatctacta caatggaaag
     4141 tacttttggt gtgattatgc ttgctattca caacaaagag ccaaaaatct tttctttaat
     4201 tgaactttta aatcttttct taaaccatag aaaaacagtg attatcagac gaacaatttt
     4261 tgaacttcaa aaagcaagag caagagctca cattttagaa ggtttaaaaa tagctttaga
     4321 taatattgat gaagttatag ctttaattaa aaatagtcct gataatacta cagcaagaga
     4381 ttctttggta gctaaatttg gacttaccga gcttcaagct aatgcgattt tagatatgaa
     4441 actcggccgt ttaacaggac ttgaaagaga aaaaattgaa aatgaacttg cagagcttat
     4501 gaaagaaatc gcaagacttg atgagatttt aaaaagcgaa actttgctag aaaatcttat
     4561 ccgcgatgaa ttaaaagaga taaaaagcaa atttgatgtg ccgcgtatta cgcaaataga
     4621 agatgattat gatgatattg atattgaaga tttgattcct aatgaaaata tggttgtaac
     4681 cattactcat cgtggataca ttaaaagagt gccaagtaaa caatacgaaa aacaaaaacg
     4741 cggtggaaaa ggcaagcttg ctgtaacgac ttatgatgat gattttatcg aaagtttctt
     4801 tactgctaat actcatgata cattaatgtt tgttactgat agaggacagc tttattggtt
     4861 gaaagtttat aagatacctg aaggttcaag aacagctaaa ggaaaagcgg ttgttaattt
     4921 gattaattta caagctgatg aaaaaatcat ggctatcatt ccgactactg attttgatga
     4981 aaacaaatcc ttatgtttct ttactaaaaa tggtatagta aaacgcacca atttaagtga
     5041 atatcaaaat atcagaagtg tgggtgtaaa agcgattaac ttagatgaaa atgatgaatt
     5101 agttactgct attatcgttc aaagagatga gaatgaagaa acaggacttt tagatgatga
     5161 cagtcttaat gatgaaaata caaactctga tgaaaattta attgaatcca ttaagggtaa
     5221 aatgctcttt gcagtgacta aaaagggtat gtgtattaaa tttcctcttg caaaagtgcg
     5281 tgagattggt cgcgtaagtc gtggggtaac agctattaag tttaaagaga aaaatgacga
     5341 attagtaggt gctgttgtta tagaaaatga tgagcaagag attttaagta tcagcgctaa
     5401 gggtatagga aagcgaacaa atgcgggaga atatagactt caaagcagag gcggaaaagg
     5461 tgtcatttgt atgaagttaa ccgataaaac caaagagctt attagcgttg taattgtaga
     5521 tgaaagtatg gatttaatgg cactaacaag cagtggtaaa atgatacgcg ttgatatgca
     5581 aagcattaga aaagcggggc gtaataccag tggtgttatt gtggttaatg ttgaaaatga
     5641 cgaggtggtt agcatcgcta aatgtcctaa agaagagctt gaggatgaaa taagcgatga
     5701 aaacttagat ttaaatttat aatagttatt tgagttggaa cgctttttgc ttttttatca
     5761 aataattaca atattttgaa ggtgtaaata tgaaaaaatt ttattttatg ctaataatag
     5821 caggaatttt tgcagggtgt acagcgagta caaacagtac tacagctaaa aatccaaata
     5881 gtccaagtac ttcagctcaa gcatcggata ttgttgttca aaaagtggat aaagacgatg
     5941 ttcgtgatat tattagagaa gaaaaaatgc tagctcctga tgtaagcgaa agtgagctta
     6001 gttttagtgc tgtaggagaa ggaattgctc ctcttaatac tgtttcaagt gctcaagctt
     6061 tagcattagc aaaaagagcc gcaattacag atgcttatag acagcttgca agtaagcttt
     6121 atggcgttaa agttaatggt aaagatactg taaaagatgc aatgcttaga agctcaacca
     6181 tcactgcaca agtaaatggt ttaattaaaa atgctagcat aattgatgag aattttaatc
     6241 aaggccttta cagagttaat gtagaactta agattgatgc ggacaagtgg aaagaattgt
     6301 ttgcttatta atatttttta gttttaaact aattgcccaa gatgaattta tattttgggc
     6361 agaactttct aacaaaaatt taatcctttt tcatcaaagt caaaatttat cccctgcaat
     6421 gacgcgtagt gaaaatacta taagtgaatt tgcttgcgaa atttcttata ctgatgatga
     6481 tttaaaaaaa cttccaagaa cagaattggg tatgatagat gatgatatgt ctaaggctat
     6541 taaatttgat tttttaaatg cccataaaga tgaattaagt gattgtttta tgggtgctag
     6601 aatttctgta aaagatatag tcaaaacaga cttgttaaaa gcacaaaatg aaacctatgt
     6661 taaaatttta cctttgcgtt ttagtgtaga atttggagaa agaaatgctt tgatttacta
     6721 tcttaaaaaa aagtaaattt aagccgtatt ttgctattat ttgctaaaaa atcaaaggct
     6781 agttatgaat ttggtgattg ttgaagatga tatcaatatg cgaaaatccc ttgaaatagc
     6841 tcttggggaa tatgaagaat ttcaaataaa atcttacaaa tcagccacag aagctttaaa
     6901 aaaaattgat tcagatacag atttgattat tacagatatt aatatgcctg gaattgatgg
     6961 actagaattt attaaggctt gtgaaaataa atatgatttt atcattatga caggaaatgc
     7021 aactttaaat cgcgccatag aagcggtacg cttaggtgtg aaggattttt taactaaacc
     7081 ttttgatata gaaactttgg ttgaggctat caagcgtgca aaagttattc gagaaaaaac
     7141 tgcggataaa aaaataaaaa agcaagaaga aaaacaagaa aatggttttt tctcgagttc
     7201 tgataaatta gaacaagttt taagcttgag tcaaaaggct gctaaaacag atgcatcagt
     7261 tatgcttttt ggtgagagtg gcgtgggtaa agaagttttt tcacgtttta ttcatcaaaa
     7321 ttctaaacgc tcccaaaagc cttttgtagc tatcaatatg gctgccatcc cttcaaattt
     7381 gatagaaagt gagctttttg gatttgaaaa aggggcattt actgatgcta atgccaccaa
     7441 aataggactt tttgaaatgg caaataatgg aactttattt ttagatgaaa taggtgaaat
     7501 gccttatgaa attcaagcca aactcttaag ggccttgcaa gaaaaagaaa tcacaagact
     7561 tggaagtact aaaagtatca aaatagatgt aaggattatt agtgcgacca atgcaaattt
     7621 gcaagataag atcgataatg gagaatttag atcggatttg tattatcgtt taaatacagt
     7681 tcctattaat ataccccctc taagagaaag aaaagaagaa attttgggca tagcgcaaaa
     7741 agttttagaa aatacttgta aagagtatga gcttgaaatg aaaaaaataa gtcaagaagc
     7801 tcaaaaagct ttgcttgaat ataattttcc aggcaatata agagagctta tttctatagt
     7861 tcagcgtgct tgtattttaa gcgagggatt agaaatttca gaacaagatt tatttttaga
     7921 agcaagaagt gtaaaaaaag atgtaaaaaa tttagaaaaa gaattgctag agcaaatttt
     7981 agagcaatgt gaatttgata aagaaaaagc aagcaacgaa cttggaatga gtatagaaaa
     8041 tttaaacaat aaaatcaaac aatacaaaat aaaggaaaaa taatgtcaaa aaaacaaaaa
     8101 atagctatag ttggagcaac aggtgcggtt ggagaagagc ttttaaatgt attagatgag
     8161 cttgattttc cagtcgagag tattttgcct ttggctagtg caaaaagcgc aggtaatcaa
     8221 atagaattta gaggcaaatc ttatacaata aaagagctta ccgaggatgt ttttagagaa
     8281 aatcctgtag atatagcttt ttttagtgca ggcggaagtg taagtgaaaa atatgctaaa
     8341 tttgctgtag aagcaggtgc tgtggtaatt gataacacaa gtcattttag aatggaaaaa
     8401 gatgtgcctt tagtcgttcc agaatgcaat cctgaagata ttaaagaatg gaaaaaaaca
     8461 ggtatcattg caaatccaaa ttgttcaact atacaaatgg tgcatatttt aaaaccttta
     8521 aatgatgctt ttgatttaaa gcgtgtggat gtaagtacct atcaagcagc aagtggagca
     8581 ggtaaggaag gtatggaaga attggttcgc gcaatgcaaa gcttttttgc tttcaagctt
     8641 gatgaatttg aagctcaaac atttcctcat actttagcac ttaatttgat tcctcaaatt
     8701 gatgtattta tggataatgg ctatacaaaa gaagagctta aaatgatcaa tgaaacacaa
     8761 aaaattcttc ataaaaattt agaaatttca gctacttgtg taagagttcc agttttaaga
     8821 agtcatagtg aagcaattac tatgcatttt gcaaaagaag tagatgtaaa taaagcaaga
     8881 gatatactcc aaaatgcacc aagtgttgtt gttatagatg aaccaaaaga taaaaaatat
     8941 cctatgcctt taatgactag cgatacaaat gaaacctatg tgggtagaat tcgcttagat
     9001 gttacacata aaaatatact tcatctttgg tgcgtagcag atcaaattcg cgtaggcgct
     9061 gctacaaatg cagtgcgcat tgctcaaaaa tggttagaat tagaaaataa ataaaaggag
     9121 taaaagagtg ttagagaaaa tttttgaatc cttgcttgtt aaaagtcgta ttgttacaat
     9181 tttacccgta atattcggtc ttgtgggcgc ttttgtttta ttttttattg caagctatga
     9241 tgttttaaaa gtaattcttt atacttatca atatttcttt agcgctggaa tcaagattga
     9301 tttacatgaa gatgtggtag ctttgattat aggagctgta gatctttatc ttatggcttt
     9361 ggttttattt attttttctt ttggagtgta tgaacttttt attagcgaga tagaagaatt
     9421 taaacaaacc aagcaaagta aagtcttgga ggtgcatagt ttagatcagc ttaaagataa
     9481 gcttgcaaaa gtgattatca tggttttggt agtaaatttc tttcaaaggg tattgcaaat
     9541 gaaatttgct actcctacag atatggcttt tcttgccgga tctattttag ctctttgtgt
     9601 ggggctttat tttttacaca agggcggaca ttgaggcttg attatctttt tttgatataa
     9661 ttaaaatttt ggtttgtaag gatgattatg aaaaagctat ttttgatttt attggcggta
     9721 attaatgttt taactttttc ttatgcggct cccttagatg aagtttttaa agatgttgaa
     9781 gtttcgggcg ttgtgcgcta tagatacgag acgcaaaggg ttaaaaaaac agataataaa
     9841 aacaaaaaac acaatgttac aaaccgcacc gaaatcacta taaaatagag gtaggatatg
     9901 tttcgttact tgacaatttt ttcgattttt gttgtagcgc tttttggtat aaatttgaag
     9961 tcttttttta cttatacttt tgatgcaaat aaacaatacg atatggttca agccaaggat
    10021 ttatatttta aaaataaatg caatacttgc catggagata atgctgaaaa aagtgtcgca
    10081 ggttctagag tattaaaaga tatgtctcct gaggatatta aagcggcctt ggtgggttat
    10141 actcttgatg gtagtacttc tgctaatgct tcacaaatgg ctttttatgc tagaaattta
    10201 agccacgatg atatggataa tatcattgca tatatcaagg gtggaaattt tgctgttgat
    10261 ttgcaagtga aagatttatt agaagaagaa ccaccgcaaa aaacgaaaca taatactttt
    10321 ttaaaataaa atattgagtt taatttaatg aaaggatgga taagatgaaa aaagttactt
    10381 tagtttttag tgccttagct ttggcaaatt gtttatatgc aaaaacaatt aatttaggag
    10441 tagtgttgcc attaacagga ccagtggctg cttatgggca agatgttttt aatggtatag
    10501 aacttgctaa taaattaaat gctaagttag ataatggtga tgaagtaaag ttaatcgtta
    10561 ttgatactaa aggcgataaa cttgaaacta caagtgcagt aaatcgtctt atagcgcaag
    10621 ataaggttat agggattata ggagaggcta ccacgccaaa tactatacaa gctatatcaa
    10681 ttgtagaaga taaaaaaatt ccactcattg ctccagtagc ttcaggagat aaacttctag
    10741 agggcaaaaa atacgcttct cgtgtgtgct ttagcgatag ttttcaaggg gataaatttg
    10801 cgagttatgt tacaaaagaa ttaaacctta aaaatgctgt tgttattata gatcaaagta
    10861 atgtttattc tttaggactt gcaaaagctt ttgaaaaatc tttaaaagag aatggcggta
    10921 aggtgatcaa aaaacttgca atcagttcag gcgataaaga ttttagagct gtagtttcac
    10981 agcttaaaag tttaaatcct gattttgttt atatgccaat ttatcatcct gaagctgctc
    11041 ttattgctag acaagctaaa caaattggtt ttgataaatt attagctgct ggagatgggg
    11101 ttaataatca aacttttata gatttgggct caactgctgt aaatggagtg gtttttacag
    11161 atagttttga ctcaagtaac ccttctactg ctcgtggtaa aacttttatc aatgaatatg
    11221 aaaaaataaa aggcaatgca aatcttccag ctttttcagc tatgggtgcg gatgcttatt
    11281 atgtaatgct aaatgctatg aatgcttgcc aaaatacact tactagcgag tgtatcaatg
    11341 aaaaaatcca tcaaacaagc aattacgaag gtgtgggtgg aattattagc attgatgcaa
    11401 gcggtaatgc aattcgtcct gttgttataa aagaaataca agatggcaag caagtttata
    11461 aaactttaat caatcctaag gaaaagtaat gaaaaagaaa ataattttag cagcagcttt
    11521 ggctttaagt ttacaagcaa aagaagtaaa tttaggagtt gttttacctt taagtggggc
    11581 aacggcagct tatggacaaa gtgctttaga gggtataaaa ttagctaatg aaatgcaaag
    11641 tactttagct aacggagata aaatcaatct tgttgttttg gatactaagg gagataagat
    11701 cgaatccgca agtgctgcta cccgccttgt aaatcaagat aaggtattag gacttatcgg
    11761 tgaaatggtt actgcaaata ctttacaagt aatgcgcata gctgaagaaa ataaagttcc
    11821 tcttatcgct cctgctgcaa caggagataa gcttttagaa aacaaattat attcaagtag
    11881 agtttgcttt atggatagtt ttcaaggctc atctttggca aaatacgctt ttgaaaaatt
    11941 aaaccacaaa aaagctgtaa ttgtggttga tcaaagtacg gattattctt taggacttgc
    12001 taaggctttt gaaaaagaat ttaaggctaa gggtggtgaa attttaaaaa ctcttagagt
    12061 aaattcaggc gataaagatt ttaaagctat tgcaactcaa attaaaattt taaatcctga
    12121 ttttattttc cttccgcttt attatagtga agcttctttg tttgttagac aagcaaagct
    12181 cataggttta aataccccaa tgggttcagc tgatggggtt gcagatgcta cttttattaa
    12241 attagcaggc aatgcaagcg aaggatatat ttttacagat agctttgatg caaacaatcc
    12301 tacaacccag ctaagtaaag attttatagc taaatacgca aaggaaaatc aaagtaaaga
    12361 ggttccaaat tttacagcta tgggagcgga tgcttatttt gtaatgttta atgctatgaa
    12421 tgcttgccaa aatacactta caagtgagtg tattaatgaa aaaattcacc aaacaaacaa
    12481 ttatgaagga gtttccgggg ttattagtat cgataaaagc ggaaatgcaa ctcgttctgt
    12541 ggtagtgaaa gaaattaaaa atcaaaaaca aacttataaa gatactataa atccttagga
    12601 aaaatatgga ctctacttta tttttacaac aacttgttaa tggtcttagt ctaggcagca
    12661 tgtacgcact tattgccgtg ggctatacca tggtatatgg tgtattaagg ctgatcaatt
    12721 ttgcacacgg tgatattatg atggtgggtg cttatatagc ccttttgttg ataaattttt
    12781 tttctccaat tatcaatcat ttaaatcaaa ctttttttgg tagcgatgag cttggaaaat
    12841 atcttgttgt tatttttgca gctgcacttg tggcttctat gatcttttct tctattgtgg
    12901 gaatattgat agataaaatt gcctataagc ctttaagaaa agctcctaga atttcattat
    12961 tgataaccgc aatcggtatt agcttttttt tacaaaatct ttttaatgtg atttttactt
    13021 caaccgaaca gcaatttcca gcaccaccaa tatttgaaac tttggttagc ataggcggtg
    13081 ttagtacaac tttaggttcg ttgcttgtac ctttagtaac tctagtagta atgcttggag
    13141 tcctttttat cctttataaa agtaaatacg gcatagccat tcgtgctttg gcttttgata
    13201 tacaaactgt aaatttaatg ggaattaatg caaatagaat tattgccatt gtttttgctt
    13261 taggatctgc tttagctgct ctagcaggga ttttttggtc gagtaattac tattctgctt
    13321 atcctactat ggggacttta gttggactta aggcctttgc agcagcagtt ttaggaggga
    13381 ttggctctgt agtaggagcg gttctaggag gactcatcat aggattgact gaagttatgg
    13441 ccgtggcttt ctttccagag ctttcgggtt ttaaggatgc ttttgctttt atttttcttg
    13501 tgtttatctt actttttaga ccaacgggaa ttttgggcat aaattttgaa aagagtaggt
    13561 tttaaaaatg gtaaaaatta aaatttcagc tttagtttat attgttttag ctattgcttt
    13621 tattatgctt gctccacaat tttttgatgg ctatggtatt ggtatattaa atcaaattgc
    13681 tatttatatt actttagcag taagttataa tttaatcaat ggtgtcacag gtcagttttc
    13741 tttagagcca aatggtttta tagcagtagg tgcttatgct gcggctctag tgcttttaag
    13801 ctcggaacaa aaattagatt tattcagttt agaagaccca aatcctatca ttttagcttt
    13861 gcatacaaat tctttcatct tagcactttt agtcgctggc tttagcgctt gtgttttatc
    13921 tttaatcctt gcttttgctg tttttcgtgt aagaggggat tatctagcta ttgtaacttt
    13981 aggttttggt attattatcc aaaaattagc gattaatttt ccaagttgga caaatggatc
    14041 tatgggctta aatggtattc ctttgctttc aaatctttat tggacaggtg gagtggcgat
    14101 tatatctgtt attttgattt taaatttggt ttattctaaa tttggcaggg caatgcaagc
    14161 aattagggat gatgaagacg ctgcaagcgc tatgggagta aatacttttt ggactaaaac
    14221 tcttgctttt ggaacttctg cttttttaga gggcgtaggt ggaggacttt tggtttgtct
    14281 tcttgcctct gtttctccag agcaatttgg ttttgaattt acttttatgt tgcttataat
    14341 tatagtttta ggcggcttag gttctactac gggagctatt ttgggagcta ttttgatcat
    14401 aggtggaaga gagtggttaa gatttttaga tgaaatgcag attaaaatcg attttctagg
    14461 tatcgatatg ggttctatgc caggacttag aatggtggtt ttttctttaa ttcttatttt
    14521 agttatgctt tttgcacgac gcggaatttt tggcgataga gagcttaatt ccttctttaa
    14581 aagaccttct aaaaaaggac ttaaataatg attttggagc ttaagaatat tactaaaaaa
    14641 tttggggaag tgagagctat taatgaaact tcttttcata ttaaagaggg tgaaattttt
    14701 gctctaattg gtcctaatgg tgcgggcaaa acaacacttt ttaatattat tacaggcaat
    14761 tataaaccaa caagcggaga agtatttttt caaaataaga aaattaacga tttaaagcct
    14821 cataaaattg tgcatttagg catagcaaga acctttcaaa acattagatt attttcaagt
    14881 atgagtgtgc ttgaaaatgt tatgataggt tttgataaac aaatgaaata tagcgttttg
    14941 gaagcttttt tgcatttagg tcgtttccat agggttgagc aagaatttaa aaataaagct
    15001 tataagcttt tagaagaact cggtattagt gaatttgcag atgagaaagc tacgagttta
    15061 agttatggtc agcaaagaaa agttgaaatt gcaagagcta tggctacaaa cccaaaactt
    15121 cttttacttg atgaacctgc tgcaggtatg aattctagcg aaagcgatga attagcagag
    15181 cttattttaa agcttagaaa agactataag atcagcgttt tgcttataga gcacgatatg
    15241 aaatttgtta ataggctttg tgataaagtt ttggtgcttg attatggtaa gactattttt
    15301 gaaggaaaaa taagtgatgc tgtaaatcat aaagaggtaa ttgctgctta tttgggagat
    15361 tttgatgcta gtagttaaaa atttgcatgt ttattatggc ttgattgaag cagttaaggg
    15421 tatagatttt aaagtagaaa caggtcatat agtttctctt attggctcta atggagcagg
    15481 aaagacttct actctcaatg cgcttttaaa tgcagtaaaa cgaactggag aaataaattt
    15541 tttaggttat gatacaaaaa ggcatctaac tcatactttg gtgcaaaaag gtatagcttt
    15601 agtgcctgaa ggaaggcgcg tttttatcaa tcttagtgtc gaagaaaatt taaaaatagg
    15661 tgcttataat aatagtgaaa actatgagca cttaagagag caaatgtata agttatttcc
    15721 aagacttgcg agcaaaaaac atgctatggc aggaaattta agtggagggg aagctcaaat
    15781 gcttgctatt tcaagagctt tgatgagcga acctaagctt ttaatgcttg atgagccctc
    15841 gcttggactt gctcctaaga tagttggaga ggtttttgat atcatagtgc gtttaaagga
    15901 agagggcatt actatacttt tagtggagca aaatgcttac tctgcgttaa agataagtga
    15961 ttatgcttat gttttagaaa atggacttat tgcaatgcaa ggtgaggcta aaaaacttat
    16021 aggcgatgac aatattagaa aaaaatattt aggattatga tacagaggtt aggatatgaa
    16081 aaatattatt aaaagtgtgg gtgatttaag aatttctata gttttatttt tgctttttgc
    16141 tttatcttgt ggtttggcaa cctttataga gagtgcttat ggtacaccta ctgcatgggc
    16201 aatggtatat gatagttttt ggtttgagta tatacagctt ttgttaggca taaatttatt
    16261 atttggaatg tttcgttata agatgtttgc tctaaaaaaa atgcctttga tgatttttca
    16321 tttttctttt ctttttatct tgcttggctc tgctataact cgttatggtg gttttgaagg
    16381 tttattagcg attcgagagc acactcaaaa tgctttagtt gaaagctcta aaacctcttt
    16441 aagaatttct actattaaag atggcgagcg ttatacttcc gtaaatgatc gttacatagg
    16501 aaatttacct tttgcaaatt cttttaaatt aaatttaaat atgggagatg aaaaagctgt
    16561 tttaaaatat gaaaatttaa ttttagatgc agattatact tataaagaag ataatgtttc
    16621 ttcacccttg cttgttttga ctatttctga aaaaaattcc caaggtgcaa atttggaatt
    16681 tagatcagga gaggtacaaa atatcaatgg aattaatttc gcctttatga atgatgatgt
    16741 ggctaaacct tatatcaaaa tagataaaaa tttaaaatta agctcaagcg aaaatttaag
    16801 cgttttcaac atgaaaaaag gcgagaattc aactcttaaa attggcgaaa aggcagatgc
    16861 taaagatctt agattgtata gtttggataa tttaaatttt gtagtgaaat ttgcttcttt
    16921 gcatggagct caagaaattc aaggcgtcaa tagaccgcaa gatgaaagct tttggctatg
    16981 gtttaaatca gcttggttag aatttgcaag aactataatg atatcaagct ttggggagcc
    17041 acaaaactgg aaagcttctt ggcttacgaa ttttaaagat tttgctatga gtaaggatta
    17101 tcaggctttg gaattaaaag gaagacatgc gttaaaactt cagttagagt ataagaatga
    17161 aagtaaagaa ttttacgtat ttgaatacaa taaacctact gtagtagaac ttgctgggca
    17221 aaaattcttt atttcttggg cgcttgcata tgagcaattg ccttttgaaa tttatttaag
    17281 agattttgtt atagatcgtt atcctggatc tatgtctcct gcttcttatg caagtgaaat
    17341 tacggttaaa aataatgaag ataatttcga ttataggatt ttcatgaata atgtgttaga
    17401 ttataagggt tatagatttt atcaaagttc ttacgatcag gatgaaaaag ggacgatatt
    17461 atcagtcaat aaagacccgg gtaaaattcc tacatatata ggttatttct tgctttgttt
    17521 aggtatgttt ttaaatttct taaacccaca ttcaagattt agaactctag caagacttat
    17581 caacaaagac gctctgaagc atactgctag tgttttggct ttatttgtag ctttatttgg
    17641 agcagataaa atgcttgctc aagatttaaa tataagctta gagcaaaata tacctatagt
    17701 ggataaagca catgttaaag agcttaaagc ccttatcgtg caaaaatctg tagatggtag
    17761 aatgatacct tttgatactt tagctagaga aattttggaa aaaattcata agagtgcaga
    17821 ctataaagga caagaagcaa gcgctataat gctttcaatg cttatcaatg tagatttatg
    17881 gcaaaatgaa gcctttattt taatgccaag caataaaaat gttcgtgagg ctatcgctga
    17941 aattttagaa atttctccag aattaaaata tgtcaaatat aaggatttct ttgatgctaa
    18001 taatcgttac aaacttcaaa aatatgtgga aaatgctaac cgcaaaaacc caaatgctag
    18061 aggggtattt gataaagaaa tcatttattt agatgaaaga gcaaatgttg taaatttggt
    18121 ttttagtgga gaacttttta aatttattcc tatacaaaat catgacaata atgcatggtt
    18181 ggctcctttt tctgctatta caacacttaa ggatgaagag ggtcagtttg tttttacact
    18241 tataaaaaat tatttttctt ctgtggactc agcttttcat gatggaaatt ggacaagagc
    18301 taatgaagct ttaggtttta tcaaacaata tcaagagaaa atagggcatg aggttatgcc
    18361 taataaaaca aaagtagaga tggaaatttt ttcaaataaa gctgaaattt ttgtcaaact
    18421 tgctcctata tatttaatcg cgggattttt attgttgatt gttcttttga ttaaaatggt
    18481 tgcgccaaaa cttaaaattt ctcttatatt taaagtcatt tatattttaa atattttagc
    18541 ctttatagtc catactgtag gacttggatt gcgtgcttac ttagcagatc atgctccttg
    18601 gagtaatgga tatgagagta tggtttatat agcttgggct ttatctcttt caggaatttt
    18661 cttttctaga aaaagtccga ttgctttatc tttgacttct atacttgcgg gtattgtttt
    18721 agctgtggct cacttaagtg agatgaatcc acaaattaca aatcttatgc cagtgcttaa
    18781 ttcgtattgg cttagtatcc atgtgtcagt tattactgct agctatggat ttttaggact
    18841 ttgttctttg cttggaattt ttactttatt gttaatgtgt tttttaaaag aaaacaatca
    18901 atacaatcaa agtattttaa gaaatatcac agaagcaact cgaattaatg aaatgtcaat
    18961 gatttttgga ctttgtttgc ttactgttgg aaatttctta ggtgcaattt gggccaatga
    19021 gagttggggt agatattgga gttgggatcc aaaagaaact tgggctttgg taagtatttt
    19081 ggtttatgcg gctattttgc atattagaat gattccaaaa tattctaatc aatttacctt
    19141 tgcattatgg agtatgtttg cttattgggt tgttattatg acttattttg gagtaaatta
    19201 tttcttagta ggtttgcact cttatgctgc aggagaagct gctcaaattc ctagttatgt
    19261 ttattgggga gttgtgatta tgattgtttt agcattactt gcaagaagaa agcgtgagtt
    19321 tgtaggcaaa ctttaatgag ccatattttt tgggtgatta tttgcacctc tggagctttg
    19381 ctcctctttt tgagtttgat agcttatttg attctcagtg ataataaaaa gaaaaataaa
    19441 aaacaaaaaa atactgagaa tacagctaaa gcccgcaaat ttgataatga tttaaataag
    19501 atgatagtag cggcgagtga tttaaaatat agcgatcgtg atttaaagga gttggtaaag
    19561 ctctttgttc aaacacataa gctaggctct aaaacttcta aagaattaga tgaaaaaaca
    19621 aaaaataaat tagaatttgt atccgcttta gctgctaacc caaaagctag ccctcaaact
    19681 gtaagttttt taaatcaaga gcttaaaaaa atttctgctt cttacaaaaa agaaatcgat
    19741 gcctatgagc agatgggttt agcaaaaaga aaaatcaaag aagagaaata aaaccagatt
    19801 taaatttttt aagcgtatgt gtttttaaag aaattacaag caattatggt ggagtttata
    19861 ttttgataaa gagataagag aagagatatt acagagagaa agcatatttt aaaggcgcta
    19921 aaggacgaga gtttgggtga tgatatttga gattggttgc aagatgcaag cagaaaatat
    19981 cttgttgttt tacataccat gataaattat agtgtagaaa gctatggatt atttggagat
    20041 gaaagagagg tgggtagctt tacaagtgta ggacacaaag gtgttgatgg tggataagtt
    20101 aaagcaaaat tttattatca catctaataa ttacgcggac aaaaatatgc ctatcaagga
    20161 gtaagtatgc gtttttataa aatgcttctg gctttaatct taagtacaaa tttagccaat
    20221 gcttatgata ctactattat ttataatgaa gataaaccta tttttaaact tgatttttac
    20281 aataaaggag aaaatacggt ttttttggtg aaactgttgc ctcttcctat actttaaatg
    20341 agatccaaag aaatgaaatc attcgtgcaa ctcaattttg ggctaatatt ataggagcta
    20401 gtgcaatcaa ttcttccccc attcctatca gtgtaagtac ctttgatatt ccaaatgcca
    20461 atgcattatc ttatgatttc ttttctaatc ctatatttaa tagggtattg caaggagaaa
    20521 gtatagatac tattagacaa gaacttatag gtgtatcaga agattttttt actaaagcaa
    20581 gtgtagaata cttagggcat attaatatgg gaaagcttga ttggtatata gctttctcat
    20641 cctactaccc tacctaaaaa tgggaatcag tttgatactt tttctacctt cacccatgag
    20701 ctttttcatg ctttaggcgt gttatcttta gctggtagtt gtggagaaat ttgggacaat
    20761 gttttaacgg ttttttaaac agttttagtg atcatttata tgatcttaat ggagtaaaag
    20821 ctcaaatagg aatgagaata gttaaaaccc aagcagaggt agaagaagct aagttaaaag
    20881 gagagacggt tttcttagtt aaggacgatg gtgtttatat taatggcagt tttagcaatg
    20941 cttcgggcaa tgtttatttt aaaggagaaa atgtcgcaga agttattaaa aatgctaaac
    21001 tgggttatga tggggttaat ggtattccta tcaatgcttg ggaagggatt atattagata
    21061 tgtctcatat tgagcttgat aattctttaa tgagtcatca aagttggcgt aattataact
    21121 tctatatgga agcagaatta gccttgcttc aggatatagg ttataatttt gatagaaaac
    21181 tttattatgg agattctatt tacgaaagca atcttttaaa ctggcaaagc gatcatggtt
    21241 attatgctag aaaagatggc aaatggctta taggagaata caatcctaca gaatacggag
    21301 tgggtttgca tatctatggt aaaaataata tagccactca aagccatgat attttatcaa
    21361 gtagcgtagc tgcaagtggt attcgtatag atggatcgaa taaccaattg attatagcca
    21421 atgatactaa ggttcatacc ttaggggatt attctaatgc tttattaatc gcttatggaa
    21481 aagatcatgt tattgaacat aatggagaat taaaagctac aggtaaagag ggtatagtca
    21541 tcaatataga ttttggggat aacactctag gcaatgctga agaataccgt ggctcttata
    21601 tgcatcaaat gtctggtaat aatcaagacg atcttgcgga gtataaccta gatggagcct
    21661 tggttaaaag cttaaatctt aatactgcta gctctactat aggttcttta gcttccattt
    21721 atatagctga taatgcttat gtaaacacta tcaacatagc acaatgggct aaggtagaag
    21781 gagatattat ttctaattgg gatcctaata atgaaaaatt agcaaatcaa tacaaagata
    21841 gcttttatac agatcttaat tttggttctg actctagctt atcaagagtt gctttcaatg
    21901 ctttagataa tacttggagt gttaaagcta atgtattagg ttatgataat tttaaaatga
    21961 atgttaatga gaatcttaat ctacaaggta gtgcttttgt ttatgattta aacaataaag
    22021 cccattttag cctactcggt gcagatggca tcaacccttc tttattatat attaaaaaca
    22081 atttcactca ggattcaaat gctatcctaa ctgcaggtat taatgctaat ggacaaagtc
    22141 tagtatatgt aggaggtaat gctaatttag caggagcttt taatttttac atgttaaaag
    22201 acttttataa agataaagta gtgttagatc ctgatttaat tagcgcaaat caaattcaag
    22261 gtgcttttaa ttctattgtt tatgatagta gtcttgattt ttctcctact ttaaatttta
    22321 tctatgatgc aaatacaaaa gaattaggag ttgttcgtga ttatactcct tatattaaaa
    22381 attcaagcga tatttcttta gcttatgctt taaattcttt agctcagaat ggaaaatatg
    22441 aagatattgc tttgcttttt aaagaattgg actttgctac agatgcacaa accatagccc
    22501 agggtttaaa cgagcttaat gctaaagctt atttagacag tgctaaaatt tctttagatt
    22561 tccaagagga gctcaataaa gaagccctaa gcgaatatgc caatgaatgg caaagcttcg
    22621 taaccccatt tggaacttat caaagctcaa gagctaatgg agattttgat gcttataaag
    22681 gctatggagg tggagtaaag gctaaagcta ttaagggatt tgatagtttc aatttaggat
    22741 ttaatttggt gttaaatact aataatatag atatagatga taccttagct aatacaaaaa
    22801 ccacaggggc atatgcaggc attttttcta aatatgattt agaagatttt tatcttttag
    22861 gaagttttag aatgggttat gagcacacca agcttaatag aaatgtaaac ataggagctt
    22921 ttagtgcaaa ttataattct aagtttaatt cttatcttat tagtgaaatg gtaggtatag
    22981 gtaaaagctt taatcactat ggggtaagct atggaccttt agcttatata gaacacagct
    23041 tcttacatca cttcgctatc aatgaagaaa atcagaactc tacagcttta aatattgatt
    23101 ctaaaaattt ccatgcttta aattctttta tgggatttaa tgtaaattat gaaaaaggta
    23161 tgagtgacaa agctattgtg aatttttatt tcttgggtgg atggaatcat tatttcttag
    23221 actctttaaa aaacaatgcc agctttaaag atgcaagttt aaataaattc tataccaaaa
    23281 gcaaactaag caatcaagat tctttatacc tacaaggaga aattgatttt actcataatc
    23341 aatctttctt tacaagatta atgctttcaa gtgatattaa agataatata gactttagca
    23401 ccaaacttga agtaggagct aagttttagt aaaacacaaa aaaataaagc cttgtgatta
    23461 tgatattatt aggctttatt ttatactttt aaacttaaat tgttttttgt tgatctttgt
    23521 tttatattta tcctttttaa attttcaagt aatctttgct aatgtttaaa gagttttagt
    23581 ttttgcaaat tgctatatat aaaagtaagg attttaaagc aataaaagct ataaaagcta
    23641 cttaaagatt atatttataa tacaagaaaa gataaaatca tttatttaga cttgcaaagt
    23701 gatgtagaaa agtataaaag agaatgaaaa ttttttaaat acagcttaat ttttaattgt
    23761 ttatcgttga taatctttca tctttttata agcatataaa atatatgtaa attcttagaa
    23821 gaaatttttt gcacatattt ttgaattgat caaaagatat taattaccat tcttacaaag
    23881 ttttgattta ttggctttta tttgttaagt gagataaatt gatataagaa gtaatggtgc
    23941 gctcaagagg attcgaacct ctgacctttt gaaccgcaat caaatgctct atccagctga
    24001 gctatgagcg catctttttg tatttttaaa gatgtaattg tataaaaaat tttcttaaaa
    24061 ttaggttatt tgtttaagat tttatcttca aattctaatt ctttctttct ttttttgcga
    24121 taaacgatta agccacttaa taaaataaaa catataagag caaaaacata ccaagttgca
    24181 tgtttaacat tgcttaaaaa caaatcatta gtattcatac caaaaaaacc tactatcaga
    24241 ttaagaggta aaaatattgc agataatatg cttaaaaaat ataagctttg attcattttt
    24301 tcatttttaa ttgcactcat taataaatga agctcgttta atctagtgat aatttctttg
    24361 ttgtttttta atgtaacccc gacagcaaag ataataggct ttaaagcttt tttatgcggg
    24421 cttgtccctg ctaataaatt caatgcctca tcaagcaagg aaaggttttt taaattttta
    24481 ttgatttttt gttttaggat aaaacttttt ttaaagaaat ttttgatcaa attgcctttt
    24541 aaaagtatat tttctttgcg ttctaaaatg cgttcaaagt aagcattttc atttttacaa
    24601 tcctctaaaa tagcccgaat ggtgcttaaa aaatcattta aagaaaaagg tttaaattga
    24661 gcattttcaa gtttgaaaat tgtatcatcc tcaaatccaa aaacactgaa attcgccttt
    24721 tttgtttttg agctgtaaga atttaaaatc aaaatttttt gccctaaaaa atccatatat
    24781 aaagtattta aatttttatt tgcaagaaat ttgcttaaat tctcatcgca taccattggt
    24841 tagccttttg gcgtaaaatt cgtatttgaa ttttttaaat tcagactttt ttatcgcctc
    24901 tcgtgcttgc gctactaagg ttaaataata atgtaaatta tgcaaactag ccaagcgaaa
    24961 aaaggttaat tctttagctt taaaaagatg gtttaaatat ccgcgtgaga aattacgaca
    25021 ggtatagcat gagcattcat tatcaatgct ttcatgatcg ttgataaatt cagctctttt
    25081 gatattaaat ttgccaaaat tggtgaaaaa agttccattt ctagcatttc tagtaggcat
    25141 aacacaatca aacatatcca cccctcgctc tatgttttca accaaatcct caggagttcc
    25201 aacccccata aggtagcggg ggcgattttc atctaaaaaa gggtttaaat tttccacagt
    25261 ttcatacata agagcatttt cttcacctac gctaagtcct cctatagcaa gtccatcaaa
    25321 atccatttca ttaagggcta aagcacagcg tttgcgttct tcataatcgg ttcccccttg
    25381 tatgattcca aaaatatttt gttttagacc tagtccttga atttgcattt gtttgtgata
    25441 atcaatcgct tcttttgccc attttatagt tctatctact gaaactttaa tgcgttcttt
    25501 tgtagcagga agggcgataa gatcatctag tatcatcatg atatcactat ttaaatcata
    25561 ttgagtatct aatacgcttt taggagtaaa taaatgctta gaaccatcta tatggctttt
    25621 aaattctata ccctcttgaa aatgtttaga attagcagaa agtgaaaaag cttgaaagcc
    25681 accactatca gtaagaaaac ttctatcaaa ttttgtaaag ccgtgcaaac caccaaaatg
    25741 ttttacgatt ttagaaccag gccttaaata catatgataa gtgtttgcta ggatgatttt
    25801 tgcattaagt tgttctttaa gatcaattgc atcaaggctt tttacagcac ctactgtgcc
    25861 tactggcata aacatagggg tttcaaaagt gctatgagct gttgttatct cacatactct
    25921 agctagattg tctttatgct ttaatttaaa ttccatttgt tataatttcc tttttggagt
    25981 gcaaaatgaa tcatatttta ataataattg atggtatttt agcaaagcat ttcttagaaa
    26041 ggctttgttt tgaaaaaggc ttgggatatt tttttaccat agtttgccaa aatgaagaaa
    26101 atataaattt aggtgcaaat agcgaatata ttgaatttca tcattttgat cccactagca
    26161 cagcccgcct tgaaactctt atgaataaat ctttcaaaca agcttttatc tatatgcaag
    26221 atgaatttga aactaaaaaa acctatgaag ctttgcgttc tttagatgca aatttagaga
    26281 ttgagattat ggatttttgg ggtttgaata ttaatgatgt tcatacaaat ttagccgatg
    26341 ctagaatgac tttgagccga agatttatgg attttttgcc tgatattgct ttaacggctt
    26401 attgtgttgg attgggtgtt ggggaggtta tggaagttaa aattcctgca gggtcgattt
    26461 ttgcatacag gcatattagc tccatacagc aaaaaagatg gcgtatagta ctcatttata
    26521 gaaattctaa aatttatttt gttaagccat cttttgtttt acagcctaac gatagcattt
    26581 taatcgtagg cgatcccgct gttcttcaaa gtatttttca caatatcaga ggtaaagcag
    26641 gacaatttcc acttcctttt gggagtaata tcttcactct tattgatatg aaaaaaatga
    26701 gtgaagatac acaagaaaga ttactagata ccactttgca attggttaaa aaaagcaatg
    26761 ctaagaaatt ttttataagg gtgcttaatc ctaaattggg tgctttatat gataaaatga
    26821 agcaactttc agatgagcaa gaaagtatat tttttgattt ttttaataca gattttgcaa
    26881 atttaaattc tttcttggaa aataatgata taggtattat tcttacagat tttaaacatt
    26941 ttgagcaaga gaaaaaaact ttttttgaat tgaaaattcc tattttgaaa ataggtgagg
    27001 gtaaattcga aaatattcaa aatgctgtta ttttaagtac taatgaaacc gaacttgaaa
    27061 ataatgcaaa tgtgatcaca gatcttagta agcaacttga ttttgatatt actttgtatt
    27121 attataatcc taatttgcaa aatactacag atatggagga gtattttgga agtttatcta
    27181 agctttacga taagaatatc caaattataa gcaaaaatga tgaaaatcct attttatctt
    27241 tatcttaccg tgcagatttg ttgcaatttg tgagttttga aaaagagctt ttggagggag
    27301 aatttagcaa aagtttaagc actaatctca atagacatta ttctaaaatg aggcaaaatt
    27361 atcaactttt catacctgta gaatgagaat catttaaggc ttatgataaa gtattatttt
    27421 ttaggagctt gttttttagt gtttcaaaaa agatttttat tttaaatttt cttagcttta
    27481 tggcttagaa ctaagaaaat gattagccct aatttgctag aatagattta atttcaaaat
    27541 aaaagtagaa caatgcaaat aaatgtagat ttaaaagaaa acgcttacaa ggtttatata
    27601 gacgagttgg ataatttaga attagatact aaggttttta tactttcaaa tcctaaaatt
    27661 tcaggactcc atttaaaaac actattgtct aaaattaagg ctaaagagct ttttatagcg
    27721 acgatagaag atggtgaaga atacaaaaat ttactcactt tggaaaaaat tttaaatcaa
    27781 atgtttaatt ccaagcttaa ccgaaaaagt atattgataa gctttggagg tggagtaatt
    27841 agcgatatgg gtggatttgc ggcaagtatt tatcaaaggg ggattgattt tatcaatatc
    27901 cctactacgc ttttagcttg tgtggatgct gcagtaggtg gcaaaacagg agttaataat
    27961 gcttttggaa aaaatttaat aggcactttt tatcagccta aagctgtgta ttgcgaaagt
    28021 gaatttttaa gaaccttagg tagaagagaa ttggccgcag ggatggctga atttatcaaa
    28081 atggcagcaa tgtttgatag ggatttgctt gaatttatag aagcgattga taaggaaagt
    28141 tttttaaatg cgacttgcga aaacgaaatt tttactcaaa ttatttctaa aagcgtagag
    28201 cttaaggcaa gagttgtgga gtgtgatgag aaggaatcag gcttaagaat gcttttaaat
    28261 tatggtcata cctttgctca tgtgatagaa aattttacag attataaaca atatttacat
    28321 ggtgaagcag tggctatagg gatgaatatg gcaaatcgct tggctttaaa attaggatta
    28381 ttaagtaaag aagaatgcga gagaatagaa aaaattttac ttcaatttaa tttgccaacg
    28441 cattataaaa tcgaaaacat caacgagttt tatgaggctt ttttcatgga taaaaaaagt
    28501 gctaatcaaa aattaaattt cattcttgca aattctttgg gcaagggact cataaaaggt
    28561 gatattgcca aagaaatgat attggaaacc ttggaagaat ttcaatgaga aaaatccttc
    28621 ttttactttg ctttagtctt tttgcttttg gcgatataaa tcgcactatt attaataata
    28681 tcaatgaaaa aataagcaat ttagacactg tcattggagc tagtatttgg gatgtacgct
    28741 atgaaaattt tatcaaatat caagatataa atgatgaact tattatctta aatttagaat
    28801 taaaaaaaat agaagatgtg catttacaag atgaattaaa acgaaaaata gcaactttag
    28861 aagaacagct taatgtcctt aaagagtata aagaattaaa ctttgcccat agtcttagtg
    28921 cacctgaaga tatagaaact ttatctaagc tcaccaatcc ttttgcgatt attggggctt
    28981 tttctcatat taaaaaatta agaggagaaa aagaagaata tgcctttaaa tttaatgatt
    29041 ttaagaattt ggtagaaaaa atcagagaaa agaatttaga actcaaagaa ttagtcaatc
    29101 tagaatcaaa tatcgaaaat atagaagcat taaaagcatc agataaaaaa cttgaagaat
    29161 ttgatcaagc cttaaaattt gctagtgttt cttattctgt ttatgaaaaa aagattgatg
    29221 atgaaattgc aagagtaagt gctgaaatca aagcgcaggg tttaagagcg attaatatag
    29281 tcatagctat tgttattgtt gtagctattg cttttatgtt aaaacttgtt gctaaaaaat
    29341 acataaagga taatgaaaga tactacacag caacaaagat tatcaatttt attaacctta
    29401 atatcatttt tcttattttg ctttttgctt atatagaaaa tataacctat cttgttacta
    29461 tacttggttt tgcatcagca ggcttagcta ttgctatgaa agatatgttt atgtctatgc
    29521 ttggatggtg tgtgatcgtt tttggtggaa gctttagagt aggggatcgt gtaaaagttt
    29581 ttcaaaatga tactacttat gtgggggata ttatagatat ttcttttttg cgtatcactt
    29641 tatatgaaga tattacactt gaaacttata gtaaaaatcg tagagcaggg cgtattgttt
    29701 tcatacccaa taattatgtt tttacaaatc ttatttctaa ttatactcat catggaatga
    29761 aaacgatttt agatggtata gatattagcg ttacttttga ttctaacata gaaaaagctc
    29821 aagctatagt tgaagaagtt gtcaaccgcc tagcaaaggg ctatacagaa ctagccaaaa
    29881 aaacaatgaa aagactgcaa aatgaataca gcataagaaa tcccaaagta gagcctagat
    29941 tttttgtctt ttttgaacat tgggggatga gaatatctgc ttggtatatg acaaattcat
    30001 acgcagcatt gatacttcga agcgctatca gtaaagagat tattaaagaa tttaacaagc
    30061 atgaggatat taaaatagct tatccatctc aaaatttata tttaggaaat ttaaatcaag
    30121 ctccttttga gactcattat aattctatgc attttcatac aaaggataac aattgaaaga
    30181 aaaagttttt tttaaaacct ttggatgtcg caccaatata tacgatacag agcttttgaa
    30241 aagctatgta aaagattatg aaatcgtaaa tgatgaagaa aaagcacaga ttatcgtagt
    30301 taattcttgc actgttacca atggtgcaga cagcggaata aagtcttata ttaattccat
    30361 gcaaaaaaag ggtgttagag ttatacttac gggttgcggt gcagtgagta aaggcaaaga
    30421 acttttggat aaaaaacaag tttttggagt gcttggagca tcaaataaag ataaaatcaa
    30481 tgaatttttg ggtttaaaaa caagttttta cgagcttgga aatttaaatt ttattgataa
    30541 agatatagtt tgtgagtacg aaaatcacac caaagccttt gttaaaattc aagaaggttg
    30601 cgattttgct tgttcttatt gcattatccc tagcgtgcgt gggaaatcaa gaagtgttga
    30661 tgagcaggct ttgttaaggc aggttgaaat tttaggagca aatggctata gcgaagtggt
    30721 tttaacaggt acaaacatag gttcttacgg acttaaaaat ggaacaacac taggtaagct
    30781 tttgcaaaaa atgggtcaaa tttcaggtat aaaacgcata agacttggta gtttagagcc
    30841 tgctcaaatt gatgaaagtt ttttagaaat tttagatgaa agatggatgg agcgacattt
    30901 acatatcgct ttgcaacata caagtgaaaa aatgcttcgc atcatgagaa gaagatcgca
    30961 tacagataat gacttgaagc tttttaatac catagccagt aaaggatatg ctttggggac
    31021 tgattttatc gtagggcatc caggggaaac cgaggagctt tggcatgagg ctttaaagca
    31081 ttttcaagaa tttccactta ctcatatcca tgcttttatt tttagcccta gaaacaacac
    31141 gcattcagcc accatgaaag atactataaa tggtgctgtg gctaaagaaa gattaaatac
    31201 tttaaaagtt attatagaaa ataataacta tgaatttaga aaaagagtta aaactccact
    31261 tgaaatttta gttgaaaatc aaaaagatgg tttttttgaa ggttatgatc agttttttaa
    31321 taaaataaaa atcaaaagca gtaaagatat agcaaaagaa tggctaaaat tagagcgata
    31381 tgaagtgcaa gaaaagcata atttcgcaga cttagagggt aaaaaatgaa aaacaaaaaa
    31441 attatattga tatcttttct tatcttgtgt ttgctttttg gaattttgta ttttaaaaat
    31501 gaacctaaat acatagatga aaatctttac caaagtttat taagtcaaaa tttaatcgaa
    31561 aaagcagtga ttgataagga tgaaatttgg cttaaagcta agggtgagag ctatgtgatc
    31621 gtaaaagatg gtgtagatat taaaaccctt ttatcaaaag ttcctgtgga aatcaaaaaa
    31681 gacagtactt tgtgggtatt ttttgttata tttgtatttc ttatcgcgct tttattaagt
    31741 tttgtttatt ttgcacgaaa aaaagaatta gctaagtatc ctatatctag taaaactcaa
    31801 acccaaactt ctaccacaaa tttagaaagt tccaatataa aacctgtgat ttctaatatc
    31861 acctttaatg atgtagcagg cgtgagtgaa gtaaaaatgg agcttagtga acttgtggat
    31921 tttttgcaaa atcctaaaaa atacaaagaa tttggtgtaa aaatgccaaa gggtgtttta
    31981 atggtaggtc ctccaggggt agggaaaact ttgattgcta aggcggttgc aggcgaagca
    32041 ggggtacctt ttttttatca aagcggatca agttttgttg aaatttatgt aggaatggga
    32101 gctaaaagag taagggagct tttttctaga gctaaaatga tggctccaag tattattttt
    32161 attgatgaaa ttgatgcggt gggtaaagca aggggtgaaa tgtctaatgt cgaaagagat
    32221 agcaccttaa atcaactctt aacccaaatg gatggttttg aagataatag tggtgttatc
    32281 gtaatcgccg cgactaataa aatcgagcta atggatcctg ctttacttcg ttcagggcgt
    32341 tttgatagac gtattttctt atctttgcca gattttaaag ataggcttaa aattttagaa
    32401 atttacatga agggtaaaaa taacaatatt gatttaaata aaattgcaaa agcaagtgta
    32461 ggttttagcg gtgctggact tgaaacctta gttaatgaag cggctatcaa tgctttaaga
    32521 agaaatagtt ctttggtgga agaaagcgat ttttatgctg tactaaataa ggtgctttta
    32581 ggaaagaaaa aaattctaag ttttaatgat gaagaaaagg gtatacaagc gacttatcag
    32641 gccgcaaaag ctttgagtgc gtattatttt gatataggat ttgagaaaat tactcttatt
    32701 gaagatcgtt ttaaggaata cgagcatgcc attcgctcaa aatcagaact tatcaatcgc
    32761 attaaggttt atttagcagg ctctagagct atgagtttga tttataatga aagctataca
    32821 aactcacaga atgatttttt aaaagttaaa gaattgcttg attatatgat aagctttggt
    32881 atgcttgaag aaccaaattt aaacgaaatt aaaagggagc tagatgagtt tttattccct
    32941 ttaaaagaaa aaatttcaac gcttgctaaa attttacttg aaaaagaaaa gatagagtat
    33001 aacgatgtta aagaagtagt tcaggtttaa agtatctata tggctttaga ttttgtcatc
    33061 tatcttagac tttaataaat tgttttagtc gtcatattct gtatataaaa tcgtaccatt
    33121 aaaatcaata tgtacttcta tattgttagt aagcttgatt ttgtaataat tgatttttct
    33181 ttcgatttct ctagcttttg tgttgggaaa tttgttttga atgatatttg ttaaatttgg
    33241 aggtaaaaaa tttaaatcaa aaggaaagac cttactttct atctctttcc atgaaccatc
    33301 gctttcaaat tctaattctg tcccatcgct caaataaacc tcataagcgt gcttatctct
    33361 ttgtactata cctatgggag cttgaaaatt attttttaaa aattctttag aaatacttgg
    33421 aagctcatcg ggagatatta taatatcagc gtttaaaaaa gtggataaga tagctataat
    33481 gccgtaaaat tttattttca aaagtttttc ctatttatta ttttgcacta aattttagtg
    33541 aatttatgtg aattttatgt gaatttcaag acaataacat aaatatttta aaggttgttt
    33601 ttggttgtaa ttttactgat tctcttaaat atcttattct attttacaat tccttatggg
    33661 tattataatt tgcttgggtt aaatattttg tttttcaaag gagcttattg gcaaatttta
    33721 agttcaatgt ttatgcatgg aaatttaact catctcatcc ttaatatgat agttttattt
    33781 caatttggtc gtattttaga gtcttattta ggtgctttgc gtttcttttt attgtatata
    33841 attggcggat tgatgtgttc gcttttgagt gctttttatg tatatttttc tttttattat
    33901 tttggtggga tgataaatct tgtaggagca agtggagcaa tttgtgtttt gatggggtat
    33961 tatgcttttc ttgataaaag tagtacaaag ggtcttatag tcgctatttt actaatgagt
    34021 tttgctccat tgcttatggg tgtaaatgtc gcatggtatg ggcatatttt tggttttatt
    34081 tgtggatatt ttttagggaa gttaaggaga aaaatttgaa aaaaatatat atattaagac
    34141 atgcaaaggc tgttaaggat gaggaagtgc aagattttga taggaagtta aataaaagag
    34201 gtaaagaaga cttagaaaag cttttttata atttaaaaac ccatgcgata aaatttgatt
    34261 ttatactttc aagtccatct aaacgcactg ctaagacagc taaaaaaata gccgaatttt
    34321 ataattttga caaggaaaaa attcaattta tagatgagct ttatcttgct aatttgtcta
    34381 aaatatatca aattttacaa actatcgata aaaaatataa tgaagtttta ttagtagggc
    34441 ataatcctac tttaatggaa cttggagaat ttttaggctc tttatgtttg acttcttttc
    34501 ctacttcatc tatgctttgc ttagaatttg acatagaaga ctttaaggat ttaaaagcgc
    34561 atagcggaaa agtgatattt tttgaacatg tgagaaaatt aaaagaggaa aaggagttgg
    34621 attaattact tccaaccctc gatatagttt ttgagttttc tacccacttt tggatgtttg
    34681 agttttttaa ttgcagagct ttctatttgt cttactcttt cgcgtgtaac atttaattct
    34741 ttacctattt cttctaaagt tctatcgctt tcatcgtcca ttagaccaaa acgcatacga
    34801 ataactgctt tttctctatc gtttagttga tcaagaactt catcaatttg ctcttttaaa
    34861 tcatctttta aaatgtgatc cataggcgag agtgaatttc tatcttctac aaaatcccca
    34921 aatttgccat catcttcact gccaataggc gcctcaagtg aaataggctc ttttgtgatt
    34981 ttaatcactt gcttaacctt atccacacta agtcctactt ctttggctat aacacttaca
    35041 tcaggctctt ttccgtcttt ttgcaaatgc tcgcgtataa ttttattgat ttgattgatg
    35101 gtttctatca tatgaatagg tattcttata gttctagctt ggtctgcgat cgctcttgaa
    35161 atagcttgtc ttatccacca agttgcatag gttgaaaatt tatatcctct tttgtactca
    35221 aatttatcca ctgctttcat aagacctata ttgccttctt ggataagatc taaaaaaggt
    35281 aaaccacggt ttgtataacg cttagcaata cttacaacaa gacgcaaatt tgatttagcc
    35341 attctagttt tagcttcatc agaaattttt ttacctcgtt tgatttgctc taaaatttct
    35401 ttcaagcgct ctttttctaa gtcaaagctt ttctcgctcg cttctttagt ttgaaaaagt
    35461 ttttttatct ccatgtaagt gcttaccata gtcgtttcaa gcgctctttc ggtaatttct
    35521 tccttgctta attttgtaat atcttttaag atattagcat gacgattttt taattcttca
    35581 gaaaacattg gcaaacggta ttctaggcgt tttaattctt tatcgaattc ttcatcgctt
    35641 tttaaggcag tttccattga ttttacaatt tcactgatga gtttagaagt tggacctaga
    35701 tccatcagct tttcttttag aatatttttc ttaaaagcaa ttccaagttt gtctaaaatt
    35761 tcatctccac tttctttatc tttagaaact tttagccaat ctttttttgc cttctctaaa
    35821 gctttaaatt tttctatgac ttttaaagtt ctttcatctt cttttttgct tgttttttta
    35881 ggagtttctt cttcattttc taattcttca tcgttttctt catcctcgtc ctctagttca
    35941 tcaagcttat catcattttt ttcttcatca tcaaagcttt tgaaaagttc ttttactctt
    36001 ctttctctat tgatcagtgg ttcacgataa tctaaaataa agtcaatcaa ataaggcacg
    36061 gaacaaaaag catctatgat aatatcttca ccaagttcaa tttttttgga aatttcgatt
    36121 tcttcatctt tatttaaaag tgcaatttgc cccatttctc ttagatacat acgcacagga
    36181 gaatccgatc tgctccattc tagcaaatca ttttcattgg ctaaatcaaa ttcattctca
    36241 agactagtat cttgcaattt ttgtttttct tcttgcaatc tttttgcatc ttctatattt
    36301 ttcatttgtg caatttcagc agccgaaaat aactgtactt tatacttttt cattaaagtt
    36361 tggacttttt tggcagtggc tgaattaggt tgcttgctga agtattttac taatttttcg
    36421 taagtgatat aatctttttc gttttcttta aagagctctt caagttccat atcttgggtt
    36481 ttggcattca ttgaacttcc ttaactttta tataagcttt agattttatc taaattttgc
    36541 ttaatatttg tataaaattt agttcttatt gtttaaatat tttttca
//
LOCUS       DBBXRO010000002        33120 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.002, whole genome shotgun sequence.
ACCESSION   DBBXRO010000002 DBBXRO010000000
VERSION     DBBXRO010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 33120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33120
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.002"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..296
                     /locus_tag="ACJFEZ_000036"
     CDS             <1..296
                     /locus_tag="ACJFEZ_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0916193.1"
                     /translation="KILVVSALACLGVSAFAADGATLFKKCAVCHGAKADKVYLNKVP
                     ALKSISSAERLQYMKEYSEGKRNAYGQGAIMKINLKGLTEEDFKAIEAYIETL"
     gene            complement(326..526)
                     /locus_tag="ACJFEZ_000037"
     CDS             complement(326..526)
                     /locus_tag="ACJFEZ_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein"
                     /protein_id="HGG0916194.1"
                     /translation="MNSVIMMMIGVSILGFFIILATLLWGIRTKQFDDDYKFTTLNDD
                     EDALRDAIELEKRKKEALEKRK"
     gene            complement(519..2882)
                     /locus_tag="ACJFEZ_000038"
     CDS             complement(519..2882)
                     /locus_tag="ACJFEZ_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HGG0916195.1"
                     /translation="MIMKCEHCRLDYQKSQMIEAKGKFFCCRGCLSVWEILHESGLDE
                     FYERLGNNALKPVSLEFSNKNYDEFITKTKEGFSEIYLMIHGIECSACVWLNERVLTK
                     QEGILELDINHLSHKARIVFDEQSVSLAQILNLIESIGYKASAYDPSKNSKKADLIKR
                     EFYSKLIVAIACVMNIMWIAVAKYAGFFSGMDRDIKDILNFAEFILCSPVLFYTGSNF
                     YKSAFKALKMRSLNMDSLVISGASLAYGYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTVDGLNDFLQNEVLVFNGKDFEPKDVQKVNIGDRILLKSGDKILIDG
                     ICKKGEASIDTSSLSGENEPCFVGVGSVVNSACIVLDGSIEYEANKLYKDSKLNQIIR
                     LLEFASTKKARLESLVSQISAYFSRTILTLALLCFFFWLFYHQESVEISLVHAISVLI
                     IACPCALALATPVSNLIALGQALKRAILFKDSSVVEKLSKCDIAVFDKTGVLTQTQLK
                     IAEVFLDERLNLNEFYSFVSLSNHPIAKSVAQFLQDKNAKLLNLDFKGLSNIQAKGIK
                     ACLDNTLFLGGSSKFLEDNGIKCKKEFNNSHFIFARDNEILAYFEFSSVLREGAKDLI
                     SYLKQAKIDTMILSGDNERAVEKIAKELGITSFYASCLPQDKMQAIENLSHKKKVLFV
                     GDGVNDALALKYAAVAISLREGSDLAIENSDILLLKNDLLSLKYAIKLSKDTYKIIKQ
                     NLILSLAYNAFTIPLAFLGLINPLIAALSMSFSSIMVILNALRIKNE"
     gene            2995..4293
                     /gene="rho"
                     /locus_tag="ACJFEZ_000039"
     CDS             2995..4293
                     /gene="rho"
                     /locus_tag="ACJFEZ_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HGG0916196.1"
                     /translation="MEKEKKQHQRTHIPVEGYKIEDLKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IRKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRILDLFTPIGKGQRGLIVAPPRTGKTELMKELASAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNISDRRIYPAINIIKSGTRKEELLQGVAELQ
                     KIWAIRSAISQMDDIEALKFLYSKMLKTKDNVELLSIMNE"
     gene            4296..5852
                     /locus_tag="ACJFEZ_000040"
     CDS             4296..5852
                     /locus_tag="ACJFEZ_000040"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HGG0916197.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSTSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCDNGPSDTPCGTCKQCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVARSGNGSLRDTLT
                     LLDQAIIFCQNDISTSKITDMLGFLDPAKIKEFYHAILTKNKDRVFDFLEELKDYEAS
                     SVIDEMLFYLKESFFAKSSEFSTLIYERFFRILARAKNLICDDDGFTLCVMAFMMMEA
                     SHLKEIDTQINEIQKNLTNTNSNLEKQEVKTPIVLEIQKSSTIKNAYEILLEKIYDRD
                     YELGECFKQSTQFISYENEILTISSNAQGSNRDKLNKGFKLIQELFRNHFGSNAKIVV
                     QKAIIIDESKLQSLTQELPQQNNEAQAPKKIDLHSSFNELKQGAKKFDPQEDTKEALR
                     EYFGEPKIEN"
     gene            complement(5864..7987)
                     /locus_tag="ACJFEZ_000041"
     CDS             complement(5864..7987)
                     /locus_tag="ACJFEZ_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002833017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HGG0916198.1"
                     /translation="MQEFRVKIGKMTCVNCSNAIERACKKIQGVSDASVSYVNSSGVF
                     LLEDEARSQDVIEKIQSLGFEILENEQNLEEYRKKELISLRKNLLLSIVLSALIMYFE
                     MFDTSFLSQNMQMLLSFFVIFYCGRTFFSHAIKGLKNWNLDMNTLIALGCISAFAYSF
                     CIYLNLFEDEKHLYFSGAAMIISFVLLGKFLETNAKFKALNYQKRLNEIDIKKAKILN
                     EAGELNEILSAFVKNGDIIVVREGESVAVDGVVIQGKAEIDTSFLSGEFLPSSVRVDD
                     EIKAGSILLNGNLHIKASKKAMDSTLEQIKDLVFKAGNVKTPLENSVDRISRYFVITI
                     IAFALAVFVFWSFKVGISEAFLHACAVLLISCPCALGLATPIALITAQGAAMKNFILI
                     KNPAALENLNKIKTAFFDKTGTLTQNSLELFRHNLNAKDFQMLALIESSSSHPIAKAI
                     FEASKIKAQILKGSSEIFIGKGVKYIEENKEYLLGNLKFMQESGVKNLEKADEFLQSL
                     KEEALICVYFAKNGECLGVLTLKNTLKEGAKELIEDFKKQKIQSIILSGDNEKSVQSV
                     ANLLGIADFKAGLLPEEKLQIIKEHKQNSLFVGDGINDAAALNLASVSMSFKEGSDLA
                     KNAGDFILMKDDLRLISWCFKLAKKTKNIIKLNLFWAFFYNILCIPIAAGFVPFITLS
                     PHLAALAMCFSSLCVVLNSLRLRKV"
     gene            complement(7987..8190)
                     /locus_tag="ACJFEZ_000042"
     CDS             complement(7987..8190)
                     /locus_tag="ACJFEZ_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HGG0916199.1"
                     /translation="MKFKVANINCQNCANLIKNSLEDIFGEIKIDLDANPRTLSLNLD
                     SSREEEFKKELGELGFEVLEKIE"
     gene            complement(8180..9121)
                     /gene="czcD"
                     /locus_tag="ACJFEZ_000043"
     CDS             complement(8180..9121)
                     /gene="czcD"
                     /locus_tag="ACJFEZ_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HGG0916200.1"
                     /translation="MYEFLLHEPLVNKSKHNHEDHSHEHHHADARSVDKKILKISLLM
                     TFSMMLVQFIYSLLSNSLALLSDTLHMFSDVFALTLSFLAIIAIEKWQDHQKTFGYFR
                     LEILVAFINALTIILSAIFIIYEAIEKLINPSSIDAKTMIIVAVLGFLVNAINAFMMF
                     RGANLENVNMKSAFLHMMSDLLGSLVVIIGGIAVYFSGIVYIDTILAIILSLLLLRWA
                     ITLLKQSVNILLETSPVDIEEVKQALLLNSKVEEVIDLHITQITNKMLVASMHLRVNI
                     DDLKEFEQLSYDLSHDLLHRFEIGHITIQPLRSKNEI"
     gene            complement(9196..9465)
                     /locus_tag="ACJFEZ_000044"
     CDS             complement(9196..9465)
                     /locus_tag="ACJFEZ_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HGG0916201.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERST
                     PNTASFNQAPRQEPRYNDHSYSHQSHDHYYKKKKRESWLGELFDF"
     gene            complement(9523..10017)
                     /locus_tag="ACJFEZ_000045"
     CDS             complement(9523..10017)
                     /locus_tag="ACJFEZ_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HGG0916202.1"
                     /translation="MIEFILKDMFFAAMAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLIEYFHFETLAIATFVASFCVGCLGIALAKIIKTPAEVIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTLSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(10014..10790)
                     /locus_tag="ACJFEZ_000046"
     CDS             complement(10014..10790)
                     /locus_tag="ACJFEZ_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HGG0916203.1"
                     /translation="MQKPDIQSLTNFLIDYTKTLLSAGTYTARVAKCVGRIAQVYGYE
                     ININFFFHHITLNIVDIEDNSIQRTYVIPNHHAHINFKLIFELSALSWAIYDHKYELE
                     KAKSAFNAISIQKKHSYILNLLFVSIANSGFCRLFGGDFGAGVLVFFATFLGLLLRFA
                     LTKIKIDLRIQYILCSFVSSWFVFLGLDMGYTNTSDAALGSSILYLIPGVFFINSIID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISKFGILQ"
     gene            10856..11779
                     /locus_tag="ACJFEZ_000047"
     CDS             10856..11779
                     /locus_tag="ACJFEZ_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HGG0916204.1"
                     /translation="MSKIGIVGLGFVGAASAYNIVVQNICSELYLYDIKQDLALAHAR
                     DLEDMSAIHSSYTRIIHATNLEQLASCDIIILAFRKENLKELSSRLVELQNNITELKD
                     IVLNLKHANFKGKYIVATNPNDTITYYTQFLSSLPKNHVFGSGTNLDSSRLKKILAKD
                     LDLNPKDITAYMIGEHGDSQFAALSTASVLGQNLLTFCDKMGKKLDIENIEKAVVDEG
                     YFIYKRKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEKV
                     FELKFNEKEKTKLENSKQQIKNAIQSVKDKI"
     gene            complement(11776..12378)
                     /locus_tag="ACJFEZ_000048"
     CDS             complement(11776..12378)
                     /locus_tag="ACJFEZ_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HGG0916205.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(12459..12686)
                     /locus_tag="ACJFEZ_000049"
     CDS             complement(12459..12686)
                     /locus_tag="ACJFEZ_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916206.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(12697..14148)
                     /locus_tag="ACJFEZ_000050"
     CDS             complement(12697..14148)
                     /locus_tag="ACJFEZ_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HGG0916207.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPYDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIALPGTGSGATTILDDDGVVNLGDLTIANLHFENY
                     KAFGTNFNYFLSLGYSHGNNNQLSPTLSAIIKGQGYGNGKFNEEDGYAVHVGGRYDFT
                     KALKVGYEFFWGSKYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTN
                     IQNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(14312..14794)
                     /locus_tag="ACJFEZ_000051"
     CDS             complement(14312..14794)
                     /locus_tag="ACJFEZ_000051"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HGG0916208.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(14804..15511)
                     /locus_tag="ACJFEZ_000052"
     CDS             complement(14804..15511)
                     /locus_tag="ACJFEZ_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HGG0916209.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            15620..15961
                     /locus_tag="ACJFEZ_000053"
     CDS             15620..15961
                     /locus_tag="ACJFEZ_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0916210.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            15961..16269
                     /locus_tag="ACJFEZ_000054"
     CDS             15961..16269
                     /locus_tag="ACJFEZ_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0916211.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(16287..17879)
                     /gene="argS"
                     /locus_tag="ACJFEZ_000055"
     CDS             complement(16287..17879)
                     /gene="argS"
                     /locus_tag="ACJFEZ_000055"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HGG0916212.1"
                     /translation="MKNIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELRK
                     SPISIANELAAKFQEHSYFDKVEALNGYLNFRLSKTFLNELANKALQNPNEFSKGEDK
                     TESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDNYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSLK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYDKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(17890..18129)
                     /locus_tag="ACJFEZ_000056"
     CDS             complement(17890..18129)
                     /locus_tag="ACJFEZ_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HGG0916213.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     SNEDEAAKNAHKIEEKQNTTNHANTDANIDEVKKS"
     gene            complement(18131..18748)
                     /gene="gmk"
                     /locus_tag="ACJFEZ_000057"
     CDS             complement(18131..18748)
                     /gene="gmk"
                     /locus_tag="ACJFEZ_000057"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HGG0916214.1"
                     /translation="MSAFILLVSGPSGAGKSTLLKKLFDEFQEELYFSISSTTRLPRE
                     GEQHGVDYYFITHDEFQQGIDKEQFLEWAKVHENFYGTSLEHTQNALNDGKIVVFDID
                     VQGFKIVKKKMAEKIISVFITTKNKDELKKRLIKRNTDTILQLEKRLQNASDEMKELN
                     EYDYFIINDKLEESYEALRAILIAHKFKTKGQNLEQIQNIWNKGE"
     gene            complement(18745..20298)
                     /locus_tag="ACJFEZ_000058"
     CDS             complement(18745..20298)
                     /locus_tag="ACJFEZ_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916215.1"
                     /translation="MKILLLNENPVVSRLISLSAKKMSYDFEEINAYDENLGHYDVII
                     VDSDTPAPLKILKEKCDKLIFLAPRNQSVDIDALILHKPFLPTDFLNLLNQENLKIAD
                     DIILPIEEAENPYANISLDLDGLNLDDLPDENTEDTQENELSMEENLESLALYDMEEE
                     TNQKEIASENTDKELNLDDLSLDEDQEENDASEQTTANHIEEKNEDEQALEVAFQDDI
                     LNDKTSEENEEEFEIQEQDTQEQDANQDEQDKIEDTQELEDQVDNLNGDLVQDNENSE
                     AQEAIVNNNLDAEEAQPEVLEDAEEPSKTQLQDFITDDFPIVEEQERKIDFDDIPEDA
                     EFLGQRKEEDEAVEDFLPVVEDQENLNEHDDFEEMSSLSTQDQIKEELAQLDELEYDI
                     DSDDSIKVLEDFKEEPILDDKDLPNNDEEIVVPKLQINDFDSLKESDIQEALGEEIST
                     LEDNKSEKLKIKEDQLASEAGEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNINI
                     SISFNEDKN"
     gene            complement(20354..21121)
                     /gene="fliR"
                     /locus_tag="ACJFEZ_000059"
     CDS             complement(20354..21121)
                     /gene="fliR"
                     /locus_tag="ACJFEZ_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HGG0916216.1"
                     /translation="MEFVNYLGDKNVATFMLLFARMSGLIVFFPFFSHNSIPMIIKTT
                     FALFLTMYLFPLAKLEILHLDSFFIIQLLSEIVFGMIAGLMLQIVFAIVMMAGEQIAF
                     TMGFTMASVLDPSSGTNMPITSQILHLIALLFFLAFDGHHLMLLFLSHSLGYINLGGF
                     YPHENLMHYLNMGMLNIFIIGFTMSFPILGISLLADTIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKDLILEVFTHMQTLFFA"
     gene            complement(21108..21743)
                     /locus_tag="ACJFEZ_000060"
     CDS             complement(21108..21743)
                     /locus_tag="ACJFEZ_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0916217.1"
                     /translation="MELLRAENLGHSFDYPLFENLNFSLNQKDCIAIQGSSGCGKSTL
                     LHIISSLLKPNKGEVFFKGQNLYKISENERLKIRRYDLGIIFQTHYLFKGFSALENIE
                     LASVLSNQDLDEKILKKLGIHELLKQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLVSYAKENDAALFFVTHDSKLAQFCDKTYILNTNGIC"
     gene            complement(21753..22826)
                     /gene="tsf"
                     /locus_tag="ACJFEZ_000061"
     CDS             complement(21753..22826)
                     /gene="tsf"
                     /locus_tag="ACJFEZ_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HGG0916218.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QNNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFASLKASANGVVNGYIHT
                     NGRVGVIIAAACDNAEVANKSRDFLKQLCMHIAAMKPSYLSYEDLDIEFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPKFASRKQLSDAILKEAEENIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTIEQVIAEKEKELGGKIKIVEFI
                     RFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(22826..23617)
                     /gene="rpsB"
                     /locus_tag="ACJFEZ_000062"
     CDS             complement(22826..23617)
                     /gene="rpsB"
                     /locus_tag="ACJFEZ_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HGG0916219.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALPSEEKEITDEEKKEVLDEAMSEEDFNGEQE"
     gene            complement(23734..24897)
                     /locus_tag="ACJFEZ_000063"
     CDS             complement(23734..24897)
                     /locus_tag="ACJFEZ_000063"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0916220.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFYVGNQPAKFSLIFKE
                     KIPLLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNKEDILSKIAQ
                     KEESKNIKSHYDIGNDFYRLWLDDTMSYSCAYFKTSSDTLYEAQINKIEHTLKKLDLK
                     PNEKLLDIGCGWGWLSIMAAQKYGVKVVGVTISEEQCKKAQERVRELKLEDRVEIRLQ
                     NYQDLEFEDYFDKVVSVGMFEHVGKENLGLYFMKAKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRIHYAKTLDIWSENFNQVLPQ
                     VREKYDEEFVRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKEYIYK"
     gene            complement(25024..26148)
                     /locus_tag="ACJFEZ_000064"
     CDS             complement(25024..26148)
                     /locus_tag="ACJFEZ_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HGG0916221.1"
                     /translation="MRELKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDYAAED
                     TAYAKGIIAEKEIALEDAKKSNDAKRIESAQKDLDKAKENLAKVEELWADVAKIDFTK
                     GNAAKGKEFFNNNCFACHGVKEDDIAANITDSSLGVIPPDLSSAGVIFDEKFLAALIM
                     NPALALKVDHKFGDAFIMTAYNSEVSGDSEELVNANIADVIAYLKEVGLKFEAKENAT
                     IKQEAELKYSKIEDANEKSALVEKEIAFAKDKSTFIEACGRCHDIKYDNFFTPSNHND
                     LANYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEDAQVKVVSYLE
                     KVGDSKKEERESTGIYIMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(26145..27395)
                     /locus_tag="ACJFEZ_000065"
     CDS             complement(26145..27395)
                     /locus_tag="ACJFEZ_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HGG0916222.1"
                     /translation="MAHIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFTVLFITGLLLVMYYKPDTALAFDSVNKTIMQEVEYGWLWRHMHGVAASVIF
                     LIIYIHMLTGIYYGSYKRGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYICLFMIFFFYLVSFKF
                     SFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     IIFFLLPWLDRSDVVKPAHERPLFFIWFWVLLIDLIVLTIYGKLPPTGVNAWVGFYAS
                     IIFLLLFIVVLPVITIMERKGAKQ"
     gene            complement(27397..27900)
                     /gene="petA"
                     /locus_tag="ACJFEZ_000066"
     CDS             complement(27397..27900)
                     /gene="petA"
                     /locus_tag="ACJFEZ_000066"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HGG0916223.1"
                     /translation="MATSESRRSFMGFAFGTVAAVGGVFSLVAVKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDPNMEKDTKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYHASEQLFKCACHGGEFDTSGKNTFGPPPRPLDIPPFKIDGTKLVLGEEGPEY
                     KKMTEEA"
     gene            complement(27990..29258)
                     /locus_tag="ACJFEZ_000067"
     CDS             complement(27990..29258)
                     /locus_tag="ACJFEZ_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HGG0916224.1"
                     /translation="MLASVIFIITLILLFWRPWNLPLWLIAIFGALFAFIFKLVNLED
                     ASFVFDLVWDSSLTLVGLIILSFSLEVLGFFSFIAIRILRLSKLKNSHAIHTKKLMLF
                     MLAFVFCLSALFGNDGAILIITPIVLALFSTLKNYKESAILSAFLLSVSFLCDASSNA
                     LIISNLTNIITANYFNLDFLEFAKTMFLPNLFVLLSTIIMVFLIFAKILPKGLEINIS
                     SNDCISVKLFIFCVIYLIFFVSSFFIGEIYNLNASFFAVSGALLFWFFVCFLKKREAL
                     KIIKNVPWGIFAFSFGLYMVVFALHKVGISDILIFIYDILAQNAITAIFGTGFISAFL
                     SSVFNNLPMALIGDLALKNFPQSMVYAHLLGVNIGPKLTPIGSLATLLWLGLLAKKGI
                     EISFWKYCKFGFLITLPVLTCSLFALVLQY"
     gene            complement(29258..31117)
                     /gene="mnmG"
                     /locus_tag="ACJFEZ_000068"
     CDS             complement(29258..31117)
                     /gene="mnmG"
                     /locus_tag="ACJFEZ_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HGG0916225.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDIN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFEEAKITRFG
                     YAIEYDYIEPTELYHTLETKKIKNLYCAGQINGTTGYEEAAAQGFMAGVNAVLALDNK
                     EPFILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAIVRLGKYGKELG
                     LLEDESYQFIENIRLNTQKGLELLLEKEFTPNTENNAFLASIGEEKITSIVNLQKIVA
                     RSSFDIEKLKKLNTIFENMDEYSLREILNEAKYYHYIAMQKSQVEKMKNLIDMKIPSD
                     FDFTSVSGLSNEVVEKLQKHKPLTLFAASEISGITPAALDILQIYIKMQKKKS"
     gene            complement(31205..31702)
                     /gene="cetB"
                     /locus_tag="ACJFEZ_000069"
     CDS             complement(31205..31702)
                     /gene="cetB"
                     /locus_tag="ACJFEZ_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HGG0916226.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(31720..33099)
                     /gene="cetA"
                     /locus_tag="ACJFEZ_000070"
                     /pseudo
     CDS             complement(31720..33099)
                     /gene="cetA"
                     /locus_tag="ACJFEZ_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
BASE COUNT        11326 a         6119 c         4493 g        11182 t
ORIGIN      
        1 aaaaaatatt agtagtttct gctttagcat gtcttggcgt atcagctttc gccgcagatg
       61 gagctacact ttttaaaaaa tgtgcagtat gccacggcgc aaaagcagat aaagtttatc
      121 taaacaaagt tccagcatta aaaagcatct cttcagctga aagacttcaa tatatgaaag
      181 aatactcaga aggtaaaaga aatgcttatg gacaaggcgc tatcatgaaa atcaacctta
      241 aaggtttaac tgaagaagat ttcaaagcta tcgaagctta tatcgaaact ttataatttt
      301 aaggctttca aaatttagaa agcctttatt ttctcttttc taaagcttct ttttttcttt
      361 tttctaattc tatagcatcg cgcaaagcat cctcatcatc atttagagta gtaaatttat
      421 aatcatcatc aaattgttta gtccttatcc cccaaagcaa ggtagccagt ataataaaaa
      481 aacccagtat tgaaacccct atcatcatca tgattacact attcattttt tatccttaaa
      541 gcatttaaaa tcaccattat gctactaaaa gacatagaaa gcgctgcaat taaaggatta
      601 attaaaccta aaaatgccaa aggtatggta aaagcattgt aagctaaaga aaggattaaa
      661 ttttgcttga taattttata agtatcctta gaaagcttaa tggcgtattt taaagaaagc
      721 aaatcatttt ttaaaagcaa aatatcacta ttttcaatcg ccaaatcact cccttctcgc
      781 aaagatattg ccacagcagc atattttaaa gccaaggcat cattgactcc atcgcctaca
      841 aataaaactt ttttcttatg acttaaattt tcaattgctt gcattttatc ttgaggcaag
      901 caggaagcat aaaaagaagt aattcctaat tctttggcaa ttttttcaac cgctctttca
      961 ttatctccac ttaaaatcat cgtatcaatc ttagcttgtt taagataaga tataagatct
     1021 ttagcacctt ctcttaatac gcttgaaaat tcaaaataag caagaatttc attatcacgc
     1081 gcaaagataa aatgagaatt gttaaattct tttttacatt ttatcccatt atcttctaaa
     1141 aatttcgaac ttccgcccaa aaataaagta ttatcaagac aagctttaat gccctttgct
     1201 tgaatattgc tcaaaccctt aaaatccaaa tttaaaagct ttgcattttt atcttgtaaa
     1261 aactgcgcta cacttttagc aataggatga tttgaaagcg atacaaagct ataaaactca
     1321 tttaaattta gcctttcatc taaaaaaact tcagctattt ttaattgggt ttgagtaaga
     1381 actcctgttt tatcaaatac tgctatatcg cattttgaaa gtttttcaac cacgcttgaa
     1441 tccttaaata aaatcgctct ttttaaagcc tgacccaaag cgataagatt gcttactgga
     1501 gtagctaaag ctagagcgca aggacaagca atgattaaaa cagaaatcgc atgaacaagt
     1561 gaaatttcaa cactttcttg atgataaaac agccaaaaga aaaaacaaag caaggcaaga
     1621 gttaaaatgg tacgagaaaa ataagcagaa atttgagaaa ccaagctttc aagtctagct
     1681 tttttggtgc tagcaaattc caaaagcctt atgatttgat ttaatttaga atccttataa
     1741 agcttatttg cttcatattc tatacttcca tctagcacaa tacaagctga atttacaaca
     1801 ctacccacgc ccacaaagca aggctcattt tcgccactta aagaagaagt atcgatactt
     1861 gcttcaccct ttttgcaaat tccatctatg agaattttat ccccactttt aagtaaaatc
     1921 ctatctccga tattgacctt ttgaacatct ttaggctcaa aatctttgcc attgaaaacc
     1981 aaaacttcat tttgtaaaaa atcatttagg ccatctactg tatccaaagc gcgttttttg
     2041 ctaaacattt caagatattt acctataaaa acaaagcaaa taatcatagc cacagaatca
     2101 aaatacacct cgcctactct aaaaaacatc gcccataaag agtatccata agccaaactt
     2161 gctccgctta taaccaagct atccatattt aaactacgca tttttagagc tttaaaagca
     2221 cttttataaa aatttgaacc tgtataaaaa agcacaggag agcaaaggat aaattcagca
     2281 aaatttaaaa tatctttaat atccctatcc ataccgctaa aaaatcccgc atattttgct
     2341 actgctatcc acatgatatt catcacacaa gcaatggcaa ctatgagctt agagtaaaat
     2401 tctcgcttga tcaaatctgc ttttttggaa tttttagatg gatcataagc actggcttta
     2461 tatcctatac tttcgataag atttaaaatt tgcgccaaag aaacactttg ttcatcaaaa
     2521 acaatgcgtg ctttatggga aagatgattg atatctaact ccaaaattcc ttcttgtttg
     2581 gttaaaactc tctcattaag ccaaacacaa gcggagcatt ctatgccgtg tatcatgaga
     2641 taaatttcgc taaaaccctc tttggttttg gtgataaact catcataatt tttgttagaa
     2701 aattccaagc taactggctt tagtgcgtta ttgcccaatc tttcgtaaaa ttcatctaag
     2761 ccactttcat gtaaaatttc ccaaacactc aaacagcccc tacagcaaaa aaatttaccc
     2821 ttagcttcta tcatttgaga tttttgataa tctagtctac aatgttcaca tttcataatc
     2881 attctttaaa aaaatatttt ttataattat agacaaattt gacaaaaagt atattttttt
     2941 actaaaatca cggttttaat ttgctacaaa attactgctt tcttgcgagg acttatggaa
     3001 aaagaaaaaa aacaacatca aagaacccac attccagtgg agggttataa aattgaagac
     3061 ttaaaactac ttgacttaga aaacctagtt aaaatagcta atgaatgcga gatagaaaat
     3121 cctagagaat ttcgccgtca agaactcatt tttgaaattt taaaagccca aaccaaaaag
     3181 ggtggtttta tcctttttac aggaatttta gaaatttctt cagaaggtta tggcttttta
     3241 aggggtatgg attcaaattt aagcgatagt gtcaatgatg cttatgtttc aaactcacaa
     3301 attcgtaaat ttgctctacg cgtgggcgat atagtaactg gacaagttag agagcctaag
     3361 gatcaggaaa aatactatgc tcttttgaaa atagaagcga ttaattattt gcctttgcaa
     3421 gaagctaaag aaagaccttt atttgataac ttaactccta tttttccaac agaaaaaatc
     3481 aaactcgaat acgatgctat gaaattaact ggaagaattt tagatctttt tacccctata
     3541 ggtaaaggac aacgcggact catcgtagca ccgccaagaa cgggtaaaac agaacttatg
     3601 aaagagctag caagtgcgat tgctaaaaat catcctgaaa tgcatttaat cgttctttta
     3661 gtcgatgaaa gacctgaaga ggttactgat atgcaaagat gtgtaaaggg tgaagtgttt
     3721 agctctactt ttgatttgcc tgcttataat catgttcgcg tggcagaact agttatcgaa
     3781 aaagcaaaaa gaatggtaga aacaggcaaa gatgttatca ttttgctaga tagtatcaca
     3841 aggcttgcta gagcttataa cactgcaact ccaagcagtg gaaaggtact aagtggtggg
     3901 gtagatgcta atgcacttca taaacctaaa cgcttttttg gtgcagcaag aaatatagaa
     3961 aatggcggat ctttgaccat agtagcaact gcacttatcg acacaggttc aagaatggat
     4021 gatgtgatct ttgaagaatt taaaggaacg ggtaatagcg aaatagtctt agatagaaat
     4081 atttcagata gaagaattta tcctgcgatt aatatcatca aatctggaac tcgaaaagaa
     4141 gaacttttac aaggagtggc agaactacaa aaaatttggg ctattcgttc agcgatttct
     4201 caaatggatg atatcgaagc gcttaaattt ctttattcaa aaatgttaaa aactaaagac
     4261 aatgtagaac ttttatctat tatgaatgag tagagatgct tcaagcctta gcgattaaat
     4321 acagacctaa aacctttgat gaactcatag gacaaaaaac agtcagtaca agcttaaaat
     4381 atgcattaaa tcacaatcgc ctagctcatg cttatctctt ttcaggctta cgcggaagcg
     4441 gtaaaacttc aagtgccaga attttttcta gagctctagt ttgtgataat ggcccaagtg
     4501 atactccttg tggaacttgc aaacaatgcc ttgccgcact tgaaggtaaa catatagaca
     4561 tcatagaaat ggacgccgct agcaatcgcg ggctagaaga catacaagct cttattgaac
     4621 aaactaaata taccccttct atggcaagat ttaaaatctt tatcatcgat gaagtgcata
     4681 tgctaacacc tcaagctgct aatgcacttt taaaaacact agaagaacct ccaagctatg
     4741 tgaaatttat cctagcgacc accgatcctt tgaaattgcc cgctaccgtg ctttcaagga
     4801 cacaacattt tcgcttcaaa caaattccac aaaatgaaat tttaaatcat ttaaaagaaa
     4861 ttttaaacaa ggaaaatgtc aaatttgaag aagaagcctt gaaatttgtc gcaagaagtg
     4921 gaaatggctc tttaagagat actcttacct tgcttgatca agctattatc ttttgccaaa
     4981 atgatataag cacgagtaag attactgata tgttgggttt tttagatcct gctaaaatca
     5041 aagaatttta ccatgcaatt ttaaccaaaa acaaggatag agtttttgat tttttagaag
     5101 agcttaaaga ctatgaagcc tcaagcgtga tcgatgaaat gcttttttat ctaaaagaaa
     5161 gtttttttgc aaaaagcagt gaattttcaa ctctcattta tgaaaggttt ttccgtatcc
     5221 tagcaagagc aaaaaatctc atctgtgatg atgatggctt tacgctttgt gtgatggctt
     5281 ttatgatgat ggaagcaagt catttaaaag aaatcgatac gcaaattaat gaaattcaaa
     5341 aaaaccttac aaatacaaat tctaatctag aaaaacaaga ggtgaaaacc cctatagtat
     5401 tagagattca aaaatcttca acgattaaaa atgcatacga aattttactt gaaaaaatct
     5461 acgatagaga ttatgaactt ggagaatgct ttaaacaaag cactcaattt ataagttatg
     5521 aaaatgaaat tttaactatt agttcaaatg cgcaaggaag taaccgcgat aagcttaata
     5581 agggctttaa actcattcaa gaacttttta gaaatcattt tggctctaat gctaaaattg
     5641 tcgtgcaaaa agcaatcatt atagatgaga gcaaattaca atccctaacc caagaactgc
     5701 ctcaacaaaa taatgaagca caagctccta aaaaaataga tcttcactct tcttttaatg
     5761 agctaaaaca aggagcaaag aaatttgatc ctcaagagga tacaaaagaa gctttaagag
     5821 aatattttgg cgaacccaaa atagaaaact aagtctctaa agcttagact tttctaagtc
     5881 ttagagaatt aagcactaca caaagtgagc taaaacacat tgcaagtgct gctaaatgag
     5941 gacttaaagt gatgaaaggc acaaagcctg cggctatggg aatacaaaga atattataaa
     6001 aaaacgccca aaaaagattg agcttaataa tattttttgt ctttttagca agcttaaaac
     6061 accaagaaat aagccttaaa tcatctttca taagtataaa atctccagca tttttagcta
     6121 aatcacttcc ttctttaaaa ctcatactca cacttgctaa atttaaagca gctgcatcat
     6181 taatcccatc tcctacaaaa agtgaatttt gcttatgctc tttaatgatt tgcaattttt
     6241 cttcaggcaa caatcctgcc ttaaaatcag caatacccaa taaatttgcg acactttgta
     6301 cgcttttttc attatctcca cttaaaataa tgctttgaat tttttgcttt ttaaaatcct
     6361 ctataagctc tttagcccct tcttttaagg tattttttag agtaagcacc cctaagcact
     6421 caccattttt agcaaaatac acacaaatta aagcttcttc ttttaaactc tgtaaaaatt
     6481 catctgcctt ttctaaattt tttactccac tctcttgcat aaattttaaa tttcctagca
     6541 agtattcttt attttcttct atgtatttta cacccttgcc tataaaaatt tcactacttc
     6601 cttttagaat ttgagctttt atcttagaag cttcaaagat agccttagcg ataggatgag
     6661 aacttgaact ttcgattaag gctagcattt gaaaatcttt agcatttaaa ttgtgcctaa
     6721 aaagttctaa actattttgc gttaaggtgc ctgttttatc aaaaaaagct gtcttgattt
     6781 tatttaaatt ttctaaagca gcagggtttt tgattaggat aaaatttttc atcgccgcac
     6841 cttgagcggt gattaaagcg ataggagttg caagccctaa ggcgcaaggg caagagatta
     6901 aaaggactgc acaagcgtgt aaaaaagctt cacttatgcc tactttaaag ctccaaaata
     6961 caaaaactgc caaggcaaaa gcgattattg tgatgacaaa atatctagaa attctatcga
     7021 ctgaattttc caaaggagtt ttgacatttc ctgctttaaa gacaagatct ttgatctgtt
     7081 ctaaagtgct atccatagcc tttttacttg cttttatatg taaatttcca tttaaaagta
     7141 tagagcctgc ctttatctca tcatcaactc ttacactgct aggcaaaaat tctccgctta
     7201 aaaaactcgt atcaatctcg gccttacctt ggatcactac cccatcaact gctacgcttt
     7261 caccctctct tactactata atatctccat ttttaacaaa agcacttaaa atttcattaa
     7321 gctcccctgc ttcgtttaaa attttagcct tttttatatc aatttcattg agtctttttt
     7381 gataattcaa agccttaaat ttagcatttg tctctaaaaa tttacccaaa agcacaaaac
     7441 ttataatcat ggccgcacca ctaaaataaa ggtgcttttc atcttcaaaa agatttaaat
     7501 atatacaaaa agagtaagca aaggcactga tacagcctaa agcgattaag gtattcatat
     7561 ctaaattcca attttttaaa cccttaatcg catgagaaaa aaaagtccta ccgcaataaa
     7621 aaatcacaaa aaagcttaga agcatttgca tattttgact taaaaaactt gtgtcaaaca
     7681 tttcaaaata cataatcaaa gcacttaaaa ctatgcttaa aagcaaattt ttacgcaagg
     7741 agatgagttc ttttttacgg tattcttcca aattttgctc attttctaaa atctcaaagc
     7801 caagactttg aattttttca atcacatctt gactccttgc ctcatcttcg agtaaaaata
     7861 ccccactaga attcacataa gaaacacttg catcactcac tccttgtatt ttcttacaag
     7921 cacgctctat ggcattagag caatttacgc aagtcatttt gcctattttt acacgaaatt
     7981 cttgcattat tcaatctttt ctaaaacttc aaaaccaagt tcgccaagtt cttttttaaa
     8041 ttcttcttct cttgagctat ctaaattcaa acttagcgtg cggggatttg catcaagatc
     8101 tattttgatc tctccaaaaa tatcttctaa agaattttta atcaaatttg cacaattttg
     8161 acaattgata tttgcgactt taaatttcat ttttactcct taaaggttga atggtaatat
     8221 gccctatttc aaatcggtgt aacaaatcat gcgacaaatc ataagataat tgttcaaatt
     8281 cttttaaatc atcgatatta actcgtaaat gcatagaagc tactaacatt ttattggtaa
     8341 tttgtgtgat atgcaaatca atcacctctt ctactttaga atttaaaagc aaagcttgtt
     8401 ttacctcttc tatatccaca ggagaggttt caagtaaaat atttacactt tgcttaagaa
     8461 gtgttatagc ccatcttaaa agtaaaagcg ataaaataat agctaaaatc gtatctatat
     8521 aaactatacc gctaaaatat acagcaatac cacctataat cactaccaaa gagcccagca
     8581 aatcactcat catatgcaaa aaggctgatt tcatattgac attttctaaa tttgcgcctc
     8641 taaacatcat aaaagcattt atagcattga ctaaaaaacc taaaacagct actataatca
     8701 tagttttagc atcgatactg cttggattta taagcttttc tatagcttca tagataataa
     8761 aaatcgcaga taaaatgatg gttaaagcat tgataaatgc gaccaaaatt tctaagcgaa
     8821 aataaccaaa agtcttttga tgatcctgcc atttttctat agcgataata gctaaaaaac
     8881 taagtgttag agcaaaaaca tctgaaaaca tatgcaaagt atcacttaaa agcgcaagag
     8941 aattagaaag taaagagtat ataaattgaa ccagcatcat tgaaaaagtc atcaaaagag
     9001 aaattttcaa tattttttta tccacactcc ttgcatcagc atgatgatgt tcatgagagt
     9061 gatcttcgtg gttatgttta gatttattca ctaagggttc gtgtagtaaa aattcataca
     9121 ttttatatcc tttttgcttg atattttaag atattaaact aaaaaggata taaagattta
     9181 tatttttcat aaaaattaaa aatcaaaaag ttcgcctagc cagctttctc tttttttctt
     9241 tttgtaataa tgatcgtggc tttgatgact ataagaatga tcattatatc taggctcttg
     9301 tcttggagct tggttaaaac ttgccgtatt aggagtgctg cgttctatga ttttatcaag
     9361 ttctccacga tcaagccaaa caccacgaca ctttggacaa taatcaatct caactccgct
     9421 tctatcgctc attaccaaat caacattaca aacaggacac aacatgtatt tttccttttt
     9481 tataaaattt tcaaaattat aataagaaag attaaacaaa aatcaatgct ttttagcatg
     9541 ccttgtcatc ataaaacttt gctcaaagaa tataagcaag gtaacgctta cccctatagc
     9601 caaagccaaa gttaccgaaa gtgtggtaaa aaaataatca aaaaactgca ccaaaaattc
     9661 agacttagcc tttaaatcat cactgcgtat aaaagagata agatataaaa tagccttata
     9721 agcataaata ccaggtatca taggaataag cgcaggaaaa gcaataacct cagcaggggt
     9781 tttaataatc ttagccaaag caatacccaa acaacccacg caaaaagaag ctacaaaagt
     9841 tgcaattgcc aaagtttcaa aatgaaaata ttctatcaag gtaaagcgaa gtccgtgagc
     9901 aatggccgct aagagtgcag ataaaataag agtttttaaa ggaggattac aagcatacgc
     9961 gaaaccaaac ccagccatag cagcaaaaaa catatctttt aagataaatt caatcattgt
    10021 aaaatcccaa attttgaaat actaagagtc atataaattc caagagcaat acagcaaatt
    10081 aaaatagcta cgctgataat acgacttaaa cccattaaaa tatgatcttt taatatatcg
    10141 attatagaat tgataaaaaa tacccccggt ataagatata agatgctaga accaagtgct
    10201 gcatcagaag tatttgtata gcccatatct aaacccaaaa atacaaacca agaagaaaca
    10261 aaagagcaaa gaatgtattg aattcttaaa tctattttta tcttagtaag ggcaaatctt
    10321 aaaagcagtc ctaaaaaagt cgcaaaaaat accaaaaccc ctgcgccaaa atccccgcca
    10381 aaaagtctac aaaaacctga attagctata gaaacaaata aaagatttaa gatataagaa
    10441 tgtttttttt gaatacttat agcattaaag gctgattttg ctttttcaag ttcgtatttg
    10501 tgatcgtata tggcccaact taaagcactt aattcaaaaa taagtttaaa attaatatga
    10561 gcatgatgat tgggtattac ataggttctt tgtatggaat tatcttcaat atctacaata
    10621 tttaaagtga tatggtgaaa aaagaaatta atattgatct cgtatccata aacttgagct
    10681 atcctgccaa cgcatttagc aactctagct gtgtaggttc ctgcgcttaa aagtgttttg
    10741 gtatagtcga ttagaaaatt tgttaaactt tgaatatcag gcttttgcat atttataatt
    10801 tctttaaaat caaatttata taattataac aaaatttcaa agcaaaggaa ataaaatgtc
    10861 aaaaatcggt attgtgggtt tgggttttgt gggtgcagca agtgcttata atattgttgt
    10921 gcaaaatatt tgctccgaac tttatttata tgatatcaag caagacttag ccttagcaca
    10981 cgcaagagat ttagaagata tgtctgcgat tcattcttct tatacgagaa taattcatgc
    11041 tacaaattta gaacaactag caagttgtga tattatcatc ctagctttca gaaaagaaaa
    11101 tttaaaagaa ttatccagtc gtttagttga gcttcaaaac aatatcaccg agcttaagga
    11161 tattgtttta aatttaaaac atgcaaattt taagggtaaa tatatcgttg ctacaaatcc
    11221 aaatgatacg attacttatt atactcaatt tctaagctct ttacctaaaa atcatgtttt
    11281 tggaagtgga accaatcttg atagctctag acttaaaaaa attctagcca aagatttaga
    11341 tcttaatcct aaagatatca ccgcttatat gataggagaa catggggatt cgcaatttgc
    11401 cgccctttct acggctagtg ttttagggca aaatttacta acattttgcg ataagatggg
    11461 taaaaaatta gatatagaaa atatcgaaaa agcggttgtt gatgaggggt attttatcta
    11521 taaacgcaaa ggaagaacag aatttggcat aggaacttct tgtgcaaatt tagccaaagc
    11581 catcctagaa gatagaaaaa gtttacatcc tgtaagtgtg gtttttgatg atatagcttt
    11641 ttcaatgccc gctatcatag gaaaagatgg tatagaaaag gtttttgaat taaaattcaa
    11701 tgaaaaagaa aaaacaaaat tagaaaattc aaaacaacaa atcaaaaacg ccatacaaag
    11761 cgtaaaagat aaaatttaag cctttttaaa aggctttttg attttgatat aaattaaact
    11821 tgctaaaatc acaaaaacaa ttataataat taaaatttga gttaaataag ttttaatcaa
    11881 ctcttcattt tgtcctatat aataacccaa aaatacaagt atagccaccc aaatagcact
    11941 accaagtgca gtaaaaagta taaaatttac aagtttcatt tttaccaaac ctgcaggcat
    12001 agaaatatac tgacgaatcc ctggtaaaag acgacaagta aaggttgaaa attctccgtg
    12061 tttgttaaaa aattcttcga atttagcaaa tttgacttca tttataccaa aatacttacc
    12121 ccattttaat acaaaatttt taccccaaaa aaagcaaata tagtaattaa tcaaagcccc
    12181 taaaacagaa cctaaagtcc cactaagtat acaaagagtg atatcaagtt cgcctttatg
    12241 tgccaaatat ccagcaggta tcataacaac ttcacttgga aaaggtataa aacaactctc
    12301 taaggtcatt aagataataa tacccaaata cccccaagcg ctagccgtct caacaataaa
    12361 agaaatgatt tcttgcatat tagccttatt tgaagaaaat tttaaaaaat tgtagcttaa
    12421 aagattaaac agtaaaaagc ggttttatac cgcttttttt atttacctgc aactgaaact
    12481 tgatttggat tgtccgctgc acgagcgatc atacactctt ttaaaacagc agcatcagct
    12541 ggatcgctaa cttttttatt aatccagcgt tcaacttgtt tcattgtttt tgactctggc
    12601 tctggagctt cgtattttgc catcaaactt gcacaatcag ccaaagcaat gataggtaat
    12661 aaacttgcaa aaagtatttt tctcatcttt tgctccttag aattttacat tatacattaa
    12721 catgatatta tcagctcttg ctttatcttt tttcgcccca ccaaatggta agccacgatt
    12781 accccaaata ttttggatat tagtatagct taagcgtaag aattgatatc tatcaagttg
    12841 ataaatcaca taaaaatcat gtgctgttcc tcttgtcatt cttatattaa gtgggtcgtt
    12901 gatacttgga cggctcatag tataccagta tttacttccc cagaagaact cataccctac
    12961 ttttaaagcc ttggtaaaat catagcgtcc gcctacatgt acagcatagc catcttcttc
    13021 attaaattta ccattaccat aaccttgccc tttaataatt gcacttaatg tagggcttaa
    13081 ttgattgttg ttcccgtgag aataacctaa agatagaaaa taattaaaat tcgttccaaa
    13141 agctttataa ttttcaaaat gaagatttgc tatagttaaa tctcctaaat ttaccacacc
    13201 atcatcatca agaatagtag tagcaccgct accagtacca ggtaaagcaa ttggaccatt
    13261 gttaagtggc aaagcaaaat cgcttaaata tgcaatatta aataatatta aattatctcc
    13321 cataccttct ataggaagct ctccttctac tgcagcatag taaagatttg catcagcatc
    13381 tttttgatcg ctcatccagt ctcttacctt gccttcttca tcccattgat aggttttacc
    13441 ataagctgca cggatagcta ccttatgatc ttgcaaactt tcaggcttat aagtgatcac
    13501 tgctgcatca cctagagcat taatcgctaa ggctggataa gttgattgtc ttaaagcatt
    13561 gtttctaaga ttacttcccg gaccatcggt tcctggctgt cttcctacgg ttgcaatcca
    13621 ctcaggtgtg atatagtagt caagataagc tctatctaca taaagtacag gcccacttga
    13681 tcttgtgttt cttcctgcat ctaagtcata agggcttcca ctccaaccca tttgagacca
    13741 gtttttagcc atagataaac gaccatagaa tttggtttta tcattaatat cagcattcat
    13801 atttaaatga agctcattca tccatttgtt attagcacta taatcttgtc cgctaacttt
    13861 atagtttgta tttgaaactg ctgttgaaaa ctcaagtcca aatttaacct tgctcaaagc
    13921 agcttggaat tctgtttcat cggctctatc attaagatca gcaagttcag cttttacagc
    13981 ttcattttgc ttagcttgag cttccctttc ttttctgatt tgtgcaagtt cagcttgaat
    14041 ttgtgcaagc tgtttttgaa gcttggttat ctcatcatct gtatttttag caaaaagtga
    14101 agatgaaaga agacaagcac ttaaaataag tgaaaactta gttttcataa tcataactcc
    14161 ttgtaatttt gttacattta gcaaattaaa attgtgatta tagaaaaaaa agtttaaaaa
    14221 aaaattatac attaatcatt tttagctagt caaacttatg actagctttg taaatattgt
    14281 agttttaaaa aagttttaaa attttaaatt tttaaatttt atcgcaaatt tttatgtcta
    14341 aaattttatc tccttggcgt atagagtcta aaacttctaa actttcttca tcttttggat
    14401 caatttgccc aaaaacagta tgaactccat ctaaatgagc ttgagggctg tgacaaataa
    14461 aaaattgaga gccacccgta tcgcgtcctg cgtgtgccat agataaggtt ccacgctcat
    14521 gtttatgttc ttgatcatca cattcgcaaa tgatttcata tccaggccca cctacaccat
    14581 tgccgtgtgg acaacctcct tgtatgacaa aatttgggat cacacgatga aaatttaaat
    14641 ctttataaaa tccctcatta gccaaagtag caaaattaca aaccgtttgc ggagcctcat
    14701 cgccaaaaag ttttaatttc attgtgcctt tttcagtttc tataagagca aatttgtatt
    14761 catttacttt gcttgtgtcg attgttttta tcattatttc tccttaatct atatttgtat
    14821 aaacagcttg aacatcatca tcatcttcta acttatctaa aagtttttct atatcgctaa
    14881 gctgttcttc gctaaagctt acaggattgt ttggtatata ctcaagtcct gcttttttaa
    14941 gaactaaacc cttagtctct atagcagaac ttagctcacc aaaggcagta taatcaccgc
    15001 taattactaa ctcttcttca ttttgttcta attcttcaag ccctgcatcg atcaaatcaa
    15061 gttctaattc ttctaaatct cctgcaaatt tttcaagatg aaaaaccgct tttctagtaa
    15121 acataaagcc taaagatcca ttttgtaaaa cttctccacc atttttgcta aaaatggctt
    15181 taacattagc cacggtgcgc gtagggttat cgctcataca ttcaactata accaaagctc
    15241 catgtgcagc ttttccttca taatgaatgt ttttaatatc tgcgctatct tttccactcg
    15301 cacgcttaat agccgcatct atattatctt ttggcatatt atttgctttt gctgtggcta
    15361 tagcacttct taattttgga ttcatatcag gatcagtgcc accttcttta gcagctactt
    15421 gtatggcttt agcaagctta ggaaaaagct tactcatttt atcccatcta gcctctttag
    15481 aagctcttcg gtattcaaac gctcgtccca taaattctca ctttctttaa agatttttaa
    15541 acttaaaagt ataaactaaa aaggctaatt aaagctttaa atggtatgat tttaccattt
    15601 atttttaggg agaagctttt tgaatatcgc aaaaaaagaa ctttttgttg cttggttttt
    15661 cttgattgct gctattgtat ttgaagtttt aggtactagt tttttaaaaa tggaaaatca
    15721 aattttaggc tatatattta tggctttatt tatagctttt tcttattttt ttatgggcaa
    15781 ggcgattaaa aaaattcaag taggcatagc ctatgctgta tgggaacttt tagggattat
    15841 tcttatactt ttagtttctt ttatagtttt taaagagagt ttaaccttaa ctcaaattct
    15901 aggcattgtt ctttctatcg ttggaattat catgattaat ataggcgagg ttaaagaata
    15961 atgtatattt ttattattgt tctatcggca ttgttagata tcgtagcgaa tttattgcta
    16021 aaaaaatcag atggttttaa gaataaaatt tggggcttag ctgcgattgt caatgctata
    16081 cttgcttttt ttctactttc tttttcttta aaatatgttc ctttaagcat agcttactca
    16141 acttggggtg ctataggcat cataggaact tgtcttggtg gatggatttt atataaagaa
    16201 aaattaaaca aaataggaat tttaggtatc attatcgtga taatagcagt atttttgcta
    16261 aattattaaa acagcaaaat gctgttttaa tgttccattt tgttttttgc ttcaataccc
    16321 attaaagaaa atgcggtttt aatactaaga gcaaccaaag aaaataattt aagcaaatca
    16381 ttttcatttg cagagcctac aactttattt tcattgtaga atttatgaaa atttgcagct
    16441 aaatttttaa gataatcagg aattttttgc aaagctctag cctcaaaagc atcgtttaaa
    16501 acagccttta aattcaaagc ttcaaaaagc aaatttacgc catcttgatt taaactttgt
    16561 aaatcagctt tcattacatc atcgattttt ttaccagctt tagcaaacac ttgatgaatt
    16621 ctagcgtgtg catagttgat ataatacaca ggattagaac tatcttcttt ttgcaaatca
    16681 ctaatatcaa attccaaatg cgtatcgcat tttttgctca aaaagatata acgcaaagca
    16741 tcacttccta tctcatcaac cacatcactc atcaagataa aatttcctgc tcttttactc
    16801 attttataag gttctccatc tttaagtagg gaaaccattt gtgctaaaat aatctcaaga
    16861 ttattagagt caaatcccaa aaattccatc gcagctttca ttctagggat ataaccatga
    16921 tgatctgctc cccaaatatt gatacattta tcatagcctc tactcatttt atccttatga
    16981 taaactatat ccgctgctaa ataagtccca cggccatctt cacggataat aacacgatct
    17041 ttttcatctc cttttaaaga tgaagcaagc caaattttac cttcttgctc gtaaattcct
    17101 ttatgctctt ttaaagattc taaagttgca tttaaagcat cataatacga tctttcgctt
    17161 acatagttgt caattttaat ctttgcttgt tctaaatttt gtttaatcaa aacaagcatt
    17221 ttatcttttg cccaatcagc caaactaggg atattttctt cgctaaaaaa ttctttacca
    17281 aatttttcaa aagcttcttt tgctaaatct gctatatact cgcctttgta atattgctct
    17341 ggatattcaa cattttcatg aagtatactt tctttcacac ttagtaaaat agaaagccct
    17401 agtaaataaa tttgattacc cgcatcattg acatagtatt ctgtattaaa tttatagccc
    17461 aaatgtcttg caagtcttgt taaggtatca ccaaaaaccg cacctcttgc atgccctata
    17521 tgtaaagggc ctgtaggatt agcactgaca tattcaagca aaaaactttc agttttatcc
    17581 tctcctttgg aaaattcatt tggattttgt aaggctttat ttgcaagctc atttaaaaag
    17641 gtttttgata atctaaaatt caaatatcca ttgagtgctt caaccttatc aaaatagcta
    17701 tgttcttgaa atttagcagc tagttcattt gctatagaaa taggcgattt tcttaattct
    17761 ttagctaaag aaaaagccaa aggggtagca aaatgagcta gatttttatc ctttggattt
    17821 tcaagtgcaa aatcgcactc taaaattttt ttaatttcat taaaaataat atttttcaaa
    17881 aactaagcct taagattttt ttacttcatc tatatttgca tcagtatttg catgattggt
    17941 tgtattttgc ttttcttcga ttttatgcgc attttttgct gcttcatcct cattgctcat
    18001 ttcatcttta aaagtcttaa tacccttacc caagcctttt gcaagctctg gtatcttttt
    18061 ggctccaaaa agtaatacaa caattaataa aataattaac caatgacttg gacttgacca
    18121 accacccatt ttattctcct ttgttccaaa tattttgaat ttgctctaga ttttgccctt
    18181 tagtcttaaa cttatgggca attaaaattg ctcttaatgc ttcgtaactt tcctctagct
    18241 tatcgttaat gataaaataa tcatactcat taagctcttt catttcatca cttgcatttt
    18301 gcaatctctt ctctagttgc aatattgtat cagtatttcg cttaataagt ctttttttta
    18361 attcatcttt attttttgta gtgataaaaa cagaaatgat tttttcagcc attttctttt
    18421 tgactatctt aaaaccttgt acatctatat caaaaacaac tatttttcca tcatttaaag
    18481 cattttgtgt atgctcaagc gaagtgccgt aaaaattttc atgcacttta gcccactcta
    18541 aaaactgctc tttatctata ccttgctgaa attcatcatg cgtgataaaa taataatcca
    18601 ctccatgttg ctcaccttct cttggtaagc gtgttgtcga agaaatagaa aaataaagct
    18661 cttcttgaaa ttcatcaaaa agctttttta aaagagtgga ttttccagct ccacttggcc
    18721 ctgaaaccaa caatataaaa gcactcaatt tttatcctca ttaaaactaa tgctaatatt
    18781 tatattcata ttcataccct taagtgctgc ttttaaggta tcatctttaa tgcttgaagt
    18841 gatagcccct gctatacttt ggcttaattc attaacaatt tcttcacctg cttcacttgc
    18901 tagttgatct tctttgattt ttaatttctc gcttttgtta tcctctaaag tagatatttc
    18961 ttcgcctaaa gcttcttgta tatcgctttc ttttaaacta tcaaaatcat tgatttgtaa
    19021 ttttggaaca acgatttcct catcattatt tggcaaatct ttatcgtcta aaataggctc
    19081 ttctttaaaa tcctctaaaa ccttaatact atcatcgcta tcaatatcgt attcaagctc
    19141 atcaagttgt gctaactctt ctttgatttg atcttgagtg cttaagctac tcatttcttc
    19201 aaaatcatca tgttcattta aattttcttg atcttctaca acaggcaaga aatcctctac
    19261 agcttcatcc tcttcttttc tttgacctaa aaattcagca tcttctggaa tatcatcaaa
    19321 atcgattttt ctttcttgct cttcaacgat aggaaaatca tctgtaataa aatcttgcaa
    19381 ctgagtttta ctaggctcct ctgcatcttc tagtacttcc ggttgagctt cttctgcatc
    19441 taaattatta tttacaattg cctcttgagc ttcagagttt tcattatctt gcactaagtc
    19501 accatttaaa ttatcaactt gatcttcaag ttcttgagta tcttctattt tatcttgttc
    19561 atcttggttt gcatcttgtt cttgtgtatc ttgctcttga atttcaaatt cttcttcatt
    19621 ttcttcgcta gttttgtcat ttaaaatatc atcttgaaat gctacttcca aagcttgctc
    19681 atcttcattt ttttcctcta tatgattagc tgtggtttgt tctgacgcat cattctcttc
    19741 ttgatcttca tcaagactta aatcatctaa atttaattct ttatcggtat tttcactagc
    19801 aatttctttc tggtttgttt cttcttccat gtcatataaa gctaaagatt ctaaattttc
    19861 ttccatagaa agctcatttt cttgcgtatc ttcagtattt tcatcaggca agtcatctaa
    19921 atttaaacca tctaaatcta aactgatatt agcgtaagga ttttcagctt cttcgattgg
    19981 caaaataatg tcatctgcga ttttaagatt ttcttgattg agtaaattta aaaagtctgt
    20041 aggtaaaaat ggtttatgca aaattaaggc atcaatatcc acactttgat tacgcggcgc
    20101 taaaaaaatt aatttatcgc atttttcttt aagaattttc aaaggagcag gtgtatcact
    20161 gtcgactata atcacatcat aatgacctaa attttcatca taggcattaa tttcctcaaa
    20221 atcataagac attttttttg cactcaagct tataagtctt gatacaacag ggttttcatt
    20281 caaaagtaaa attttcatca ctttaatcct taaaaataat tgctattcta taacattttc
    20341 atttatcctt tgcttaggcg aaaaacagag tttgcatatg agtaaaaacc tccaaaatca
    20401 aatctttaaa atattgcatc atcacaagca aaatagctat tagaactaca aatcctaaag
    20461 ctatcttgat aggataacca attactaaaa gattgaattg tggcatagtt ttcattaaaa
    20521 gcccaaaaat agtatctgcc aaaagagaaa ttccaagtat tggaaaactc atcgtaaaac
    20581 ctataatgaa aatattcaac atccccatat ttagataatg cattaaattt tcatgaggat
    20641 aaaaaccgcc aagatttata taacccaaag aatgacttag aaataaaagc attaaatgat
    20701 gaccatcaaa agcaagaaaa aataataaag caatcaaatg caaaatttga gaagtaatag
    20761 gcatatttgt tccagaactt ggatctaaaa cgcttgccat agtaaatccc atagtaaaag
    20821 ctatctgctc gcccgccatc ataacaatag caaaaacaat ctgcagcata agccctgcta
    20881 tcattccaaa aacaatttca cttaaaagct gtataataaa aaaactatct aaatgcaaaa
    20941 tttcaagttt tgctaaagga aataaataca ttgttaaaaa taatgcaaaa gtagttttga
    21001 taatcatagg gatagaatta tgagaaaaaa aagggaaaaa tactataagc ccactcattc
    21061 tagcaaaaag caacataaag gtagctacat ttttatctcc taaataatta acaaattcca
    21121 ttggtattta aaatataagt tttatcacaa aattgagcaa gcttagaatc atgagtaaca
    21181 aaaaacaaag cagcatcatt ttctttagca taagaaacca aaagctctat gacattttta
    21241 gcattatcaa aatctaaatt tcctgtagcc tcatcggcaa aaataatttt tggtttttta
    21301 caaagcactc tagctatact cacgcgttgt tgctgacctc cgcttaattt acctattttt
    21361 tgttttaaaa gctcgtgaat gcctagtttt tttaagattt tttcatctaa atcttggttt
    21421 gataaaacac tagcaagttc tatattttct aaagctgaaa aacctttaaa aagataatgg
    21481 gtttgaaaaa tgatgcccaa gtcataacga cgaattttca gtctttcatt ttcacttatc
    21541 ttgtaaagat tttgaccctt aaaaaaaact tcgcccttat ttggctttaa taaagaagaa
    21601 attatatgca aaagagtaga ttttccgcaa ccactactgc cttgtatagc aatgcaatct
    21661 ttttgattta aagaaaaatt taaattttca aagagcggat aatcaaagct gtgacctaaa
    21721 ttttccgctc ttaataattc cattttgata ctttaaagct gtgcagcaac ttcagcagca
    21781 aaatcttcgg ttttcttttc taaaccttct cctacttcaa aacgaataaa ttcaacgatt
    21841 ttaatttttc cacctaattc tttttctttt tcagcaatta cttgttcaat ggttttttta
    21901 tcatccatta cataaaattg acccattaaa gtaagtttgc tgtcaagttg agaattatcc
    21961 gctataaagc tattcatttt accaggaata atattgtccc aaattttctc aggtttgcct
    22021 tgagctttga gttcttcttt tatattttct tctgcttctt ttaaaatcgc atcgctaagt
    22081 tgtttgcggc ttgcaaattt aggaatttta tgctctggtt tgtttggatc tttaagtctg
    22141 cgtctttctt cattttcttt ttcaagctct gcaactaaag ctttgtattc attttctaca
    22201 aattctatat ccaaatcttc atagcttaaa tagcttggct tcatagcagc tatatgcata
    22261 caaagttgtt ttaagaaatc tcttgattta tttgctacct cagcattatc acaagctgca
    22321 gcgatgataa cacccacacg accattagta tggatatatc catttaccac accatttgca
    22381 cttgctttta agctagcaaa tcttcttaca accaaatttt caccgatagt tgcaatttga
    22441 ctttttaaat attcttcaaa ttttacgccg ttgattgtac tagagtgaag ctcttcaaca
    22501 ctttgcaagc tattgttttg aatgtgtgct gttgtatctt ttgttaaagc aataaattga
    22561 tcatttttag ccacaaaatc tgtttctgag ttaatctcac ttactgttgc gcttgtaaaa
    22621 tcatcactta ccttaacact taccaagcct tctgcggcaa gtctatcagc ttttttagca
    22681 gctttaccta agcctttttc tcttaaaagt tgaactgctt tatcaaagtc tccatttgtt
    22741 tcactcaaag catttttaca atccatcatc cccgcgcctg tactttcgcg gagttctttt
    22801 accattgcag cagtaatttc agccattatt cttgctcccc attaaaatct tcttcactca
    22861 ttgcttcatc taaaacttct tttttttctt catctgtgat ttctttttct tcacttggca
    22921 aagcttcacc atcttgttct cttaacgctt ttccttcatt gatagcttca gccatttctt
    22981 ggcagaaaag ttgcactgag cggattgcat catcatttcc tggaatagga taagttacaa
    23041 gatcaggatc gcagtttgta tctaacggag ctactacagg gattcttagt ctatttgctt
    23101 cttgaactgc aattttttct tttactgtat ctataacaaa aatcatatct ggttgtgttt
    23161 tcatataacg aattccacca agataagcca ataatttttc tttttttctt gtaagcatta
    23221 aagcttcttt tttggttaaa agtttaatac ttccatcttc ttccattttt tcaataactt
    23281 ctaattttct aattgattgg cgaatagttc caaaatttgt catcataccg cccaaccatc
    23341 tgtgatttac ataaggcata ccgcattttt cagcatattc tttaatcgct ccacccgctt
    23401 gtttttttgt accaacaaaa agtatagttt ttccttcagc agcagcatcg cgaacgatat
    23461 tgtaggtata tctaaaatat ctcaaagttt tttgtaagtc tattacataa ataccttttc
    23521 tctcgccaaa aataaatttt ttcatttttg gattccagcg tcttgtttgg tgtccaaagt
    23581 gtacaccaca ttccaataaa tctctcatac ttaccatgag tttctcctta taatttagct
    23641 ttattcctcc gcatccctta tctataaaac aagctaaaag gacttgatgc gtgtgaaatg
    23701 aagctaagat tatatcaaat ttaagtttag tatttactta taaatatact ctttagtaag
    23761 gctaagatta ttattgattt ctttcgtaat taaaaattga aacaaatcta cacttccaac
    23821 gcgaaatgca gaagcacaag aacgaagata cagatcccac attcttacaa attcttcatc
    23881 atatttttct ctgacttgag gtaatacttg attaaaattc tcactccata tatctaaagt
    23941 tttagcatag tgtattctca agctttctgc caaaagaaga tgaaaatccc actcactcat
    24001 agcacttaca acctctctta acgatggcaa ataacctcct ggaaaaatat atttatctat
    24061 ccaagcatta gtttttcctt caaacattgc caaaattgaa tgcaaaagca tagaacctcc
    24121 tggttttaat acttgttttg ccttcatgaa ataaagtcct aaattttctt tacccacatg
    24181 ttcaaacatt cccactgaaa caaccttatc aaaataatcc tcaaattcta aatcttgata
    24241 attttgaagt cttatctcca ctctatcttc aagcttaagc tctcttactc tttcttgggc
    24301 tttcttgcat tgctcttctg aaatagtaac tccaacaacc ttaactccat atttttgtgc
    24361 cgccataata gaaagccaac cccaaccaca acctatatcc aaaagctttt cgttaggttt
    24421 taaatcgagt tttttaagag tatgctctat tttattgatt tgagcttcat aaagagtatc
    24481 gctagaagtc ttaaaataag cgcaagaata actcatcgta tcatcaagcc aaagtctata
    24541 aaaatcattg cctatatcat aatgactttt gatgttttta ctttcttctt tttgggctat
    24601 tttactcaag atatcttctt tattttttaa aaaacgttta ttggaaaaat aatacaaaac
    24661 tttagctatt tcatcataat caccctctat ttctaacttg gactccatat aatgttttgc
    24721 aaaaactaaa ctcgtatcac taaataattt taacaaaggt attttttctt tgaaaattaa
    24781 agaaaattta gcaggttgat tgcccacata aaattcttct tgatcccaaa atacaattct
    24841 aaaatttcca taattccatt ttgaaagaat aaatttaatc atttgttttt caagcatgat
    24901 atactccaat taataaaaat tattatttga tagtatctct taattaggtt taaaatttaa
    24961 taaaatcgaa gaaaagaagg atttttgcca cagatgtaaa atagtggcaa aaattttata
    25021 atattaatgt agtttagacc aaacagaacg cttccagcct atagcaaaaa tacttagaat
    25081 tacaaagaat atcattatat aaattcctgt gctttctctt tcttcttttt tgctatcgcc
    25141 cactttttca agataagaaa caactttaac ttgtgcatct tctgttaaac ctactcttgg
    25201 catagcagtt cctggaagaa gtttttgagt attattgata aaatcatgca agtattgctc
    25261 cccgcgagat ctaatcatca tagaaagatc aggtggaacc gaacctaaat aatttgccaa
    25321 gtcattatgg ttagatgggg taaagaaatt atcatactta atatcatgac aacgaccaca
    25381 agcttctata aaagtacttt tatctttagc aaaagcaatt tctttttcaa ctaaagctga
    25441 tttctcgtta gcgtcttcaa tttttgagta cttaagctct gcctcttgtt taattgtagc
    25501 attttcctta gcttcaaatt taagacctac ttcttttaaa taagcaataa catcggctat
    25561 atttgcattt acaagctctt cactatctcc tgaaacctca ctattgtaag cagtcataat
    25621 gaaagcatca ccaaatttat gatctacctt caaagcaaga gcaggattca tgatcaaagc
    25681 agctaaaaac ttctcatcaa aaataacacc tgctgagcta agatctggtg gaattacacc
    25741 taaagaagaa tctgtaatat ttgctgctat atcatcttct ttaacgccat gacatgcaaa
    25801 acaattatta ttaaagaact ccttgccttt tgcggcgttt cctttagtaa aatcaatttt
    25861 tgcaacatct gcccaaagct cttctacttt agctaaattt tctttagcct tatctagatc
    25921 tttttgagca ctttctattc tttttgcgtc atttgatttt ttcgcatctt ctaaagctat
    25981 ttctttttct gctataatac ctttagcata agctgtatct tctgctgcat aatcaaaatt
    26041 agcaggagca acatggggtt tcattacaga gtgcgcataa ggctcaactc cccaataaac
    26101 aagagcagta aaaactacta ctactaaaaa tatttttagc tctctcattg cttagctcct
    26161 tttctttcca tgatagttat tacaggtaaa acgactataa ataaaagtaa aaatattata
    26221 gaagcataaa aaccaaccca agcatttaca cctgttggag gtaattttcc ataaatagtt
    26281 aaaacgatga gatctataag caatacccaa aaccaaataa aaaataaagg tctttcatga
    26341 gctggtttta caacatcact tctatcaagc caaggaagca agaagaaaat aatttgtgcg
    26401 ataccaaaag cagccaaacc tatatcaaaa gctttaatac ctgcaatatc aaagaaaaat
    26461 cctcttaaaa cttcataact ccacaagaaa taccactcag gataaatatg tgctggggtt
    26521 ttaagtgcat tagctggatc aaagttgata ggatccattg caaaactaaa tttaaaactt
    26581 accaaataga aaaagaaaat cataaaaaga caaatataca taaagtcttt agataaaaat
    26641 cctggccaaa aaggaatcac tttagaaccc tttgtgtcac ctgccatgta tttttcagcc
    26701 tctaaatcaa agtcaagttc ttcagaaatt tcattattaa catgaggaat tcttaaagaa
    26761 tagaagtgaa atgctataat agcaatgata actataggaa gcaagcacac atgaagcata
    26821 aaaaatcttg ttaaagttgg atcagaaacc gcataatctc cacgaatcca aatcacaagt
    26881 tcagggccaa taaatggtat ccctccaaaa agattagtga ttacttgagc tgcccaataa
    26941 ctcatttgtc cccaaggaag catataccca ctaaaagctt cggcagagaa tactacaaaa
    27001 agtagcatac cgcttaccca aatcatctct ctaccacgct tataagaacc ataataaatt
    27061 cctgttagca tatgaatata gataattaag aagataaccg aagcggcaac accgtgcata
    27121 tgacgccaaa gccaaccata ttccacttcc tgcatgatag ttttatttac actatcaaaa
    27181 gcaagagcag tatcaggctt ataatacata acaagcaaaa gccctgtaat aaaaagcaca
    27241 gtaaaaagag tagttaaaat aactcccatt gcccaaagaa aattgatttg ctttggaatc
    27301 caatatttta ccattaaaac atcaagtaat ttatgtactg ctagtctttg atcaagccaa
    27361 tccactagcc cattagcctt tctaatatgc gccatattaa gcttcctccg tcattttttt
    27421 gtattctgga ccttcttcac ctagaacaag tttggttcca tctattttaa aaggaggtat
    27481 atcaagaggt cttggaggag gcccaaaggt attttttcca cttgtatcaa attcaccacc
    27541 atgacaggca catttaaaaa gttgctcact tgcgtgataa gcaggaatac aacccaaatg
    27601 agtacaaagt cctataacaa cagtatatgc agcattatct accacaacat ctcgctttgt
    27661 atccttttcc atatttggat ctttttttaa gataaaaata ggctttttac gccattctat
    27721 agttctaagc tctccatctt gcattcctga taaatctact gtagtaaaac ccgcagcttt
    27781 aacacttgga agcggatccc aagttttttt caccgcaaca agtgaaaaaa caccgcctac
    27841 agcagctact gttccaaatg caaaacccat aaagcttcgt ctactttcag atgtagccat
    27901 aactttgtcc tttcgttttt ttatttttaa ccaaattatt agtgtatcta aaataaaata
    27961 aattttttct ttgtttacta agttttgttt taatattgta aaacaagtgc aaaaagtgaa
    28021 caagtaagta ctggtaaagt gattaaaaaa ccaaatttac aatacttcca aaaagaaatt
    28081 tctatacctt tttttgctaa aagtcccaac caaagcaagg tagctaaaga acctatggga
    28141 gtaagttttg gtcctatatt aactcctaaa agatgtgcat aaaccatact ttgaggaaaa
    28201 ttttttaaag ccaaatcgcc aatcaatgcc ataggcagat tattaaatac agaagaaaga
    28261 aaagccgaga taaaccctgt tccaaaaata gcagtaattg cattttgagc caaaatatca
    28321 tagataaaaa ttaaaatatc gctgattcca actttatgta aggcaaaaac caccatatag
    28381 agtccaaaac taaaagcaaa aataccccaa ggtacatttt tgataatttt caatgcctct
    28441 ctttttttta aaaaacaaac aaaaaaccaa aagagtaaag cgccgcttac agcaaaaaaa
    28501 ctagcattta agttataaat ttctcctata aaaaaacttg atacaaaaaa tattaaataa
    28561 ataacacaaa aaataaaaag ctttaccgaa atacaatcat ttgatgaaat attgatttca
    28621 agccccttag gtaatatttt tgcaaaaatc aaaaatacca ttataatagt agacaatagc
    28681 acaaataaat taggcaaaaa catagtctta gcgaattcta aaaaatcaag attaaaataa
    28741 ttagctgtaa taatatttgt caaatttgag ataattaaag catttgaact tgcatcgcac
    28801 aaaaaagaaa cactgagtaa aaatgcactt aagatagcgc tttctttata atttttaaga
    28861 gttgaaaaaa gcgcaagtac aataggcgta atgattaaaa tagctccatc atttccaaat
    28921 aaagccgaaa gacaaaaaac aaaagcgagc ataaaaagca ttaatttttt agtgtgaatt
    28981 gcatgagaat ttttaagttt tgaaaggcgc aaaattctta tagctataaa gctaaaaaac
    29041 cctaacactt ccaagctaaa ggaaagtata atcaagccca caagtgttaa ggagctatcc
    29101 caaacaagat caaaaacaaa agaagcatcc tctaaattaa ccagcttaaa aataaatgca
    29161 aacaaagccc caaaaatagc aatcaaccat aaaggcaaat tccacggacg ccaaaaaagt
    29221 aaaatcaagg taattataaa aattacactg gcaagcatta agattttttc ttttgcattt
    29281 ttatataaat ttgtaaaata tccaaagccg caggggtaat cccactgatc tcactcgctg
    29341 caaaaagcgt taaaggctta tgtttttgaa gtttttctac aacttcatta ctcaatccac
    29401 tcacacttgt aaaatcaaaa tcacttggaa ttttcatatc aattaaattt ttcatttttt
    29461 caacttgtga tttttgcata gcgatataat gataatattt agcctcattt aaaatttctc
    29521 ttaaagaata ctcatccata ttctcaaaaa tcgtatttaa tttttttagc ttttctatat
    29581 caaaactcga tcttgcgaca attttttgca aattgactat ggaagtgatt ttttcctctc
    29641 ctatactcgc tagaaaggca ttattttcag tatttggagt aaattctttt tcaagaagta
    29701 attcaagtcc tttttgagta tttaaacgaa tattttctat aaactgataa gactcatctt
    29761 ctaaaagacc caactcttta ccatactttc caagtcttac gatggcattt tcttctctta
    29821 aaagcagtct aaattcagcc cttgaagtaa acattctata aggctctttt gtgcctttaa
    29881 tgactaaatc atcaatcaaa acaccgatat aagcttcatc tctacgcaaa ataaaaggtt
    29941 ctttattatc caaagctaaa acagcattca ctcccgccat aaaaccttga gccgctgctt
    30001 cttcatatcc tgtagtgcca ttaatttgtc ctgcgcaata aagattttta attttttttg
    30061 tttctagagt atgataaagc tccgttggtt ctatataatc atattctata gcatagccaa
    30121 agcgtgtaat tttagcctct tcaaaacctt ttactgagcg taacatttga gtttgtactt
    30181 cataaggtaa agaagtagaa aaaccgttaa tataatactc cgtcgcatcg atagtttgag
    30241 gctctataaa aagatgatgg ctttctttgt cgctaaaacg attgatctta tcttctatag
    30301 aaggacaata ccttggcccc acaccttcaa tctgtcctgt aaaaagcgga gcacgataaa
    30361 aattattctt aataatctca tgtgtagttg tattagtgcg tgcgatataa caaggaagtt
    30421 gagtaggatt gaaatttctt gaacgaaaac taaaagcttt aggatttata tcaccatctt
    30481 gaatttcaag cacgctaaaa tcaatgcttt ttgcatccac tcttgggcaa gttcctgttt
    30541 ttaaacgtcc catttttaaa cccaaagttt gcagataatt tcctaaattt accgaagcaa
    30601 gctcccctac ccttcctgct tgaagtttat tttcacctac atgaataagt ccatttaaaa
    30661 aagttcctgt tgttaggatg acttttttgg caaaatatat attttctaaa tttgttttta
    30721 cgcctttaac ttcatcattt tctacgatta aaacactcgc ttgttcttga gaaatttcta
    30781 aatttggaag ttttaaaagt ttattacgtg caatgatacg gtatttatcc atatcaattt
    30841 gcgccctact tccttgaacg gctacaccct tactttcatt taaaatgcga aattgtatcc
    30901 ctgcttcatc ggtgatttca cccataagac cacccatggc atcaagttct tttaccaaat
    30961 gccctttagc aagtccacct atggctggat tacaacttgc cgctcctatt tgctcaatca
    31021 atgtagttaa aagtaaggtt tttttaccca ttctagcagc agcagcactt gcttcaacac
    31081 ctgcatgtcc accacctata acaatgacat caaacatatt ttgccttgaa aaatgtgaat
    31141 ttttaaaaga aagattatat aatatttaga cttaaaacaa actcgtttta agtctaacaa
    31201 aaatttattt agcttcttga agagaaaaga ttagctcatt ataagtttta tctgcatctt
    31261 tgcagaaatt tttaagcatc tcaacaccct tatttaagcc ttgttgctgt tctgctctta
    31321 aaagatcgct ataaagactt tctattgtag aaatagcgct tttatttggc atacgacgaa
    31381 cggaataata gcctatgata ttattattaa catctattga tggggttaca tttgcaaaaa
    31441 cccaatagta attgttatct ttggttttat tttttacgta agcaaaaatt tctttgcctt
    31501 ctttcatata atcccataaa tatttaaaaa cagtttttgg catctcttca tgtcttacta
    31561 tgttatgagg tttatttaaa acttcaccca tggtataacc tgcatacttt aaaaaatcat
    31621 catttgcata aactatttta ccttttaaat ctgttttaga agtaattaaa ctatcttctt
    31681 gtaaaaaaat ttctcttgac attttcccac cctcttaatt tatattttta attttgctaa
    31741 gatttcagca cttctttgct ctagtgattt aatatcattt acaatcgcat cataagcttt
    31801 ttgatcgata taatcttgac ttgattcttc tattgctttt ttagcgttat cttttataaa
    31861 ttctttagct aattttaact cagtttcaga actaagctca ttaataacac cttgagctct
    31921 ctcatcttaa caaagattag aaattggatc tacactttca agattgaaat tttgagcccc
    31981 atttaaattt aaatatatat ttgatttata aagaatatga tcgattttaa ccacagacaa
    32041 aatcaatctc tttgcaaagg atccaaaatt aacaccaaga gcactactat tttcttctag
    32101 acgtttaaaa gcttgagaaa atttattaat tctttcttca gattcactaa caatgttaaa
    32161 aacttgctca ctgccacttt ggatatttac aaaatcttgt tgcatagtct gaattgcaat
    32221 agaaatttcg cttgtagatc tttgagttct ttctgctaac tttctaactt catcagccac
    32281 aaccgcaaag cccctaccat gctctcctgc acgcgcagct tcaatagcag catttaaagc
    32341 tagaagattg gtttgatcgg ctatatcgcg tattacttca accactgaag tgatattttg
    32401 tgaattagcc acaaaagttt gtactgtctc cttgctcgaa tttacaacat ccattaagga
    32461 acccatagca ctttgaagag aatccacctc tgaaccattt tctgtagctg tatgagaaat
    32521 ggcatccact gtatcatata catttttcat catgctaata tcttgattta atgagctaga
    32581 aatttgagac atgtctttat tttgatttcc aaggcttaaa tccattaaag ttcttgataa
    32641 agcattttta aaagtagatc ttgctgtcac ttctatgttt gctaaagctt tatttataaa
    32701 ttcgatatta tgagcaaaaa ttccttttaa accttcaggc aaagccttgc gataaaattc
    32761 acctttttga gaacaagaaa tagaagtatt aatttccctt aagtaagctt ctagcccatc
    32821 aatagtattg ttaagattat ctgctatttc ggctaatttt ttgctttttg tttttacata
    32881 gataattcta ttgtcaaaat ttccttcttt taactctcta caaagaacca aaagtttatc
    32941 tatcattatt tgctcatctt tgtgttgtct aagcaaataa atcattaaaa cagcgattaa
    33001 aacaaaaatt atcgctccaa caaaaatatg aataaaaatg acacctaaaa caccgataac
    33061 acttagaaaa atagttgata ataatccatt tttcaccata aatttacccc ttttattgaa
//
LOCUS       DBBXRO010000003        31501 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.003, whole genome shotgun sequence.
ACCESSION   DBBXRO010000003 DBBXRO010000000
VERSION     DBBXRO010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31501
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.003"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            8..718
                     /locus_tag="ACJFEZ_000071"
     CDS             8..718
                     /locus_tag="ACJFEZ_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HGG0916227.1"
                     /translation="MKKISLILACSMSLFAASNSEISDFYSKSIKAQFPNATVSVGNR
                     QKVGNTGFESVIVTITLEGQKQEQILFTKDNLIVPDIIDLKTKTSYAQEYEMKKFQEA
                     RANFTKNVKPVVQKETMLIALGDKSKPAIYVFSDPECPYCRDHLAQIKDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKESKKAKSDDEKIAILNKYYDANIKSYPKVSDSELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            763..1245
                     /locus_tag="ACJFEZ_000072"
     CDS             763..1245
                     /locus_tag="ACJFEZ_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916228.1"
                     /translation="MSACAKPAFVQSSIQTSNEGIFLKAKQGQSFSITLQNPSKIQST
                     LKDELALRLKNLGLKEVSLNADYEILINLVDFKKHSYAQRITSSGRFFYDFDPFENNG
                     EWYIENYYTMQVNIQIGSKNTLQKTSLFTRTAYLSDKKRCQLSLENKIIDQISSFFYF
                     "
     gene            complement(1247..2542)
                     /locus_tag="ACJFEZ_000073"
     CDS             complement(1247..2542)
                     /locus_tag="ACJFEZ_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0916229.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSFYALELQGANEFLVGLL
                     VGVYALTQMALQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSWADNIYTMLIGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAIMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAVLSLLCIILLYTVVPKENKLTHENTKTPFFHLIKQKNLALMNFTNFMQKMLMSIA
                     FLSIPIILVKHLGFDEHKLWIVYTASMIAGFIAMGFSGSLGEKRGLAKQILLLGIAFF
                     ILSYIFFVFSSTITFFIVAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLNKLELLAIILVILSIVWFIALLYLKNPSEFKNIYLPLETTL
                     NLSEFGKNLGVVDIYKNSKNLVIKFDSKLTNKEELESKI"
     gene            2684..3139
                     /locus_tag="ACJFEZ_000074"
     CDS             2684..3139
                     /locus_tag="ACJFEZ_000074"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HGG0916230.1"
                     /translation="MNRFQTFSLAMEGKVNIELLAAYKDKIETLSDETLFRFWYLELK
                     NPIIGLILGVVPAFILSGLTFDRFYKGDMGLGFAKMAMWAFIFIGLLIAGFFDSSSML
                     VVWIFNIVALFIWNILDFFLVWQGIKNDNLAKIIQFLEQDNENFISNKQ"
     gene            3111..3719
                     /gene="rdgB"
                     /locus_tag="ACJFEZ_000075"
     CDS             3111..3719
                     /gene="rdgB"
                     /locus_tag="ACJFEZ_000075"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HGG0916231.1"
                     /translation="MKILLATSNKHKVIELKELLKEFEIYAFDEILTAFEIEENGNSF
                     KENALIKARAVFNALDENQKNEFIVLSDDSGICVDVLGGKPGIYSARFSGKGDDKSNR
                     DELVKQMRVLGFEKSKVHYVAAIALVSLEGEWTMHGTMHGHVINTERGENGFGYDSLF
                     IPKGFDKTLAELSHNEKNQLSHRFKALELTRIVLKVLNKGKG"
     gene            complement(3753..6215)
                     /locus_tag="ACJFEZ_000076"
     CDS             complement(3753..6215)
                     /locus_tag="ACJFEZ_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HGG0916232.1"
                     /translation="MFAKFLKIFIYHPKSTFFATLFICLFLSFFASKLSVDASAESLL
                     LEDDKDLKIFRELSKHYKSDNFLLLAFKPEDENPFSGKNLNKLKELHQELEQVSLVKR
                     VFSIINAPLLQSSENTDLKELLKNIPNIQSKDINLTKAQNEILNSPFYKNNIISKDGK
                     TTGLIIYLKPDTIYNELIEKRDLSTDENKKEQIRLAIKKHQEQQKIITKQGLDTIKNI
                     IKKYEKNEDRFYLGGVSMIADDMITYIKSDLMLYGISLVFLLACALYCFFRAWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVIHLITHFIEISKLYPK
                     AKIERLVLQTLLAKANPSFYAIITTMIGFFSLMLSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKLKKYYKKEFKFNFLAFCAKTSLDPKKRSIIYILSITTIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLDIIIRFPDNKNNPSLNDVFDSFE
                     SEFDALATKDTYWFNSQKTRIAKKVHEFLENKEFIGSVLSLNSLLSLGKNINDGKDLD
                     DFTLAFLNENLPPELKQELLSPFVNIEENELRFSIRIIDSDPKLRRNEFLTNLKQELE
                     TLLKNDGVEIQITGIMLLYNNMLQSLFSSQFDTLVFVILVIFVLFIIIFRSLKFSIIA
                     LLVNIIPLSMVFALMGILGIPLDMMSITIAAIAIGIGVDDTIHYIYRFKEEIKTKSVE
                     EAILASHLSIGSALYYTTIGIVLGFSVMMSSNFIPTIYFGVLTVFVMILLLSGSLFLL
                     PSLLVTIYTKKTKALNPHKAHK"
     gene            complement(6215..6784)
                     /locus_tag="ACJFEZ_000077"
     CDS             complement(6215..6784)
                     /locus_tag="ACJFEZ_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0916233.1"
                     /translation="MKKIFLILALSLNIFALQLDEISNTMQKNINKSLQLLQNNKEDK
                     KQAADGIFLIFDHIIDYKLMAQLSLSKDYAKLNPKEQEKFASAFEASLKKSFTDKLDL
                     YKDQVLMVKNGELKNAKRYFLTSSMIVDGEEKNIIFKFYNNNNDWLIYDIDVLGVSIV
                     QTYRSQFGDILANQDFDTLLQKLENITIE"
     gene            complement(6794..7492)
                     /locus_tag="ACJFEZ_000078"
     CDS             complement(6794..7492)
                     /locus_tag="ACJFEZ_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HGG0916234.1"
                     /translation="MKLKLISCILLFSTIFAFANELDLNDFEEEYQSYKVNDPLYGYN
                     KAMTSFNVALYDYSLRPILKGYNAITPEFIRTGVRNFFDNLFAPLRFVGNVLQFKFEE
                     AGEEFKRFSANTIMGFGGIMDPASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLTLPATWYASPTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYYNTPNLYPF
                     IRDAYEQRRNELSK"
     gene            complement(7533..7976)
                     /locus_tag="ACJFEZ_000079"
     CDS             complement(7533..7976)
                     /locus_tag="ACJFEZ_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HGG0916235.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALQTRKLFALNSIHYDDTKKLDTIEIFNIPDLSKYKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKVATIFYKKTALLEPEFKVKEAKEWVEFYWDIHID"
     gene            complement(7994..9313)
                     /locus_tag="ACJFEZ_000080"
     CDS             complement(7994..9313)
                     /locus_tag="ACJFEZ_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HGG0916236.1"
                     /translation="MDFFKLKENGTNVRTEVVAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVATAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQKIPWQSALGAV
                     FISSIIFLILSFTPFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGIITPNKDTLV
                     SIGNFKNPHVLFGIFTLILIVFFWAIKLRGAFILGILISSIIAWIFGIDNASFPKQIL
                     SLPNFSSDNGLGAIFLELDIKSALNITMIPIILTFFITQLFDSIGTITGIGERGKIFD
                     DAKDGEKKLGKTLMADATGSALGALGGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLISLGNFLLIALQ"
     gene            complement(9324..10388)
                     /gene="mqnE"
                     /locus_tag="ACJFEZ_000081"
     CDS             complement(9324..10388)
                     /gene="mqnE"
                     /locus_tag="ACJFEZ_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HGG0916237.1"
                     /translation="MKNLLEKLENEERLNENEANALWDLDLFTLAKFAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMSHEEIMKIVDDTITRGTKEVH
                     IVSAHNKDTSWQWYLEIFKMIKEKYPQMHIKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEIRKKICHGKVSSENWLKIHKLWHDKGRQSNATMLFGHIEER
                     RHRIDHMLRLRALQDESGGFNAFIPLVWQRDNSYIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTNLKTFIEMI
                     KTANLTPVERDSLYNELQTY"
     gene            10531..12879
                     /locus_tag="ACJFEZ_000082"
     CDS             10531..12879
                     /locus_tag="ACJFEZ_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HGG0916238.1"
                     /translation="MLNKELELFKKNLNTYAQNYRKFFLKQGSFSLYHSKNMDNFLKK
                     TYDIVLKECFENFLPTSDNIPFCVLASKGYAKNNLCANESVSLIFVYKDIKAYHLKPM
                     IKAFIEILNDVHLQIDYVVLELNGLYNASNELKTTIIGARFICGSKILFKSVKEKFDS
                     ILHANKNEFAQILLANFKDFNLPFIKQEFNIKKDFGGLDHLRALESLLTLFKNSPKNY
                     ALNFMDEKNVSELRLAADFLLSLKSAINLQSNKDQDEFLFSNIHEIAELMYRKGKKNL
                     DAEKILVQKALQSMHTIGFYTHFLAYKIQNELQNIAQKQYRFKNLAEALTFLLGLKDQ
                     DIAFDLDLVFALKNLSYEKKDLEKALALFEKIFYKRHSFCILKLLLDSGILKELCKPF
                     GMVRFLSDEEGDYSFDEQAFLLLKEFEKYEDELESLKNLNTDEKMILKLVILLSAINN
                     ENEISLASIYRAYCIKFNLKNDVFELGLRIFKNHNALKELAEKEDVYNPIIICALLSK
                     VENLKTLKLLHTLTWLKAKALNRNPFFYKVIDRILENAKQGFDDENLLDETARRVKKE
                     LTLKRTKLFLEQNAILQDKITHIKSNLFIIKNTFEDIVEIARFAKENDFKFWFSNSTN
                     LSLQIVAFKDFKIEIVLTALANLNLVFMNLFELFDDKIYLRFEYDNIITDEQKNKLCE
                     LLNSNLSGFSSRKIKKPIIKKDELKLDLNYSKIYAKLSLNTKDQQGLMAYMMNIFNEL
                     GLVLSAAKIQTIRQRTRNTFIFQKNENLEKNEEKLLISLISE"
     gene            12883..14679
                     /gene="glmS"
                     /locus_tag="ACJFEZ_000083"
     CDS             12883..14679
                     /gene="glmS"
                     /locus_tag="ACJFEZ_000083"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HGG0916239.1"
                     /translation="MCGIVGYIGKNEKKHTILSGLKELEYRGYDSAGLAVMKNGELDF
                     FKAVGKLENLANKCANFTSEEFGFAIGHTRWATHGKPNEINAHPHLGQYSCVIHNGII
                     ENYKEIKNKLEDQGVSFLSQTDTEVIVQLFEFYAEKMEVFEAWKKTIEELRGAFATLL
                     VSKKDPTRVFFAKNAAPLIVGKSQNNEFYFASADTPLIGLCDEVIYLEDLSLGYANEK
                     ELVIYENNQLKQNSFTKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRINGDEV
                     VFDELENEDLSTVDEITLCACGTSYHAAMASAYLFERLARVKAKVEIASEFRYREAII
                     KPNSLFIVISQSGETADTLEALKIAKEQGTKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFIAQKKKIDMSAQIKALLHTPNCVAVSAKLHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKTLLYEKTKSNVEELIARDSTVLCVSPLDFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            14814..16205
                     /gene="fumC"
                     /locus_tag="ACJFEZ_000084"
     CDS             14814..16205
                     /gene="fumC"
                     /locus_tag="ACJFEZ_000084"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HGG0916240.1"
                     /translation="MEYRIEHDTMGEIKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKSAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFEGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSEKVSEELSKLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELNIPENEPGSSIMPGKVNPTQCEAITM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NREKIEYNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFA
                     KFVDPAKMIGPKA"
     gene            complement(16252..17295)
                     /locus_tag="ACJFEZ_000085"
     CDS             complement(16252..17295)
                     /locus_tag="ACJFEZ_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HGG0916241.1"
                     /translation="MQTGKIFLICFILVVLSLLLYLFKGFLLVIIIASLMAVATSNAN
                     AKFLSLTNGRKFLASMLTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLNYVKN
                     YQFTLPESLSFLEPKIKEFLASIDLNSISKQILNYASSFTKSGAKFLIDMVLICIFYF
                     FANLYGTELVIYIKSVIPIDKQELDDILSEVGNVMAVVLYSMIIIAILQGALFSIIAM
                     FYGYDAILMGVIFAVSSLIPALGGALVYIPISLYEFASSGLGSALVIFIYSVVVISFI
                     ADTLVKPLIIKWINEKLVKTPAKINELLIFLAMIAGISTFGFWGIILGPAILTFFIST
                     IRLYMILKDKNLI"
     gene            complement(17305..18315)
                     /gene="ruvB"
                     /locus_tag="ACJFEZ_000086"
     CDS             complement(17305..18315)
                     /gene="ruvB"
                     /locus_tag="ACJFEZ_000086"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HGG0916242.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEETITKERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKP
                     IGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKSFSVLKLNYEQTLFD
                     EN"
     gene            18406..18816
                     /locus_tag="ACJFEZ_000087"
     CDS             18406..18816
                     /locus_tag="ACJFEZ_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HGG0916243.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            18817..19175
                     /gene="ssrA"
                     /locus_tag="ACJFEZ_000088"
     tmRNA           18817..19175
                     /gene="ssrA"
                     /locus_tag="ACJFEZ_000088"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            19381..21636
                     /gene="capC"
                     /locus_tag="ACJFEZ_000089"
     CDS             19381..21636
                     /gene="capC"
                     /locus_tag="ACJFEZ_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin CapC"
                     /protein_id="HGG0916244.1"
                     /translation="MKKNASSKILLSLGVATLLYSGAFAAEITFNGDSDLDKYFDINE
                     KDNVATFKNENYKNKQDVTFNISTSAFDDAPEDTKINIDLGNNSLTLKNQMDYQGKTA
                     ALVKNFNVDAKDFKTTDIGLSYFNAGIINANFTMEGSGKDFDLGNIDKNKASSLLIFN
                     GSRENTNDTVNGSLTVNGDFSTTNSAIVSMKSDTFKVNGTATLKEAGLGFLSQSYSNL
                     DVNDFIALRAKDIKTDTLNEDTNAGALILKTASSYINENLLNGDDYAAYLDVTDDKKY
                     GGAFVDYKLSLKNCGGDKCLVINGGATAAAKNLTNQIAVDLEAITRIIDGLDNEQAKK
                     ALQEQKTELEKLQQEAMQNGGKIDDEKYIDLVNKNSNLNLSANDKASILVLRSITEQL
                     GSIGADLASREGVKLALQIKKDTDNTGKSVSNFNSASSAVNTTMNISNDVSIGSRVAM
                     LNNPFGTYASKMNGLKFAALDSDMRPSYVNEYTNSVWANAFGGANIIDGDSGAMYGAT
                     VGVDKQANDNVLWGAYFTYANAKIKDNNLEQKSDNFQLGMYSTINVAPQWELNLKAYA
                     QVSPTKQDNVQVDGAYNSDYTSKFLGLSANAGRVFDFSDNTLFIKPFAGVNYYFSYTP
                     SHTENGAIAKDIDSMKNNSVSVEVGAEFRKYMNENSYIFVTPKIEQFVINSGDDYTAN
                     LAVNNAFFTSVEANNKKKTYGQIIVGGNVDFTNQLSMNLGFGAKQILAGKVDNKNETY
                     LSGQVGLKYKF"
     gene            complement(21778..23862)
                     /locus_tag="ACJFEZ_000090"
     CDS             complement(21778..23862)
                     /locus_tag="ACJFEZ_000090"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HGG0916245.1"
                     /translation="MQTNPNMFLNRELSWLRFNSRVLDQCSRPLPLLERLKFVAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNISSSDEMSPLQQLKAIRKYLHKEKDLLEHYFNEIIS
                     DLEKENLFIKNYENLDNNLKQKCDEYFFSTIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKTHPELIKFGMIRIPRVLPRFYEVSANVYVPIESIVEKHTEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKGADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAIDKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGIQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKKGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKVEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKILE
                     MIALEASKGSEGVIIAKMNSLVDSDIIKALYEASIKGTQIDLIVRGICCLKPNEEFSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNLLAYELQNDGEYAKVASNEKVIDSQQILEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            24045..24536
                     /gene="nrfH"
                     /locus_tag="ACJFEZ_000091"
     CDS             24045..24536
                     /gene="nrfH"
                     /locus_tag="ACJFEZ_000091"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HGG0916246.1"
                     /translation="MKKSLNLFGIFLVLLFVFFAVGFYTFYNAKGTSYLSNASESCNN
                     CHIMNEVYNEYMAGPHAQKVKGEARATCVDCHLPHGFLAKWIAKAESGLNHAYAFTFK
                     LDELPTNLSATEKSRNMIQDNCVRCHADFAQTAINATTNPHADKSLKCASCHQDVGHK
                     HGI"
     gene            24552..26384
                     /locus_tag="ACJFEZ_000092"
     CDS             24552..26384
                     /locus_tag="ACJFEZ_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0042279 - nitrite reductase (cytochrome,
                     ammonia-forming) activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HGG0916247.1"
                     /translation="MKKNFLRLAIVVLVLLIVGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDNPNFERWGKVFPEQLKMYLTVEEEEPKATEFGGNLSYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLKAFKGQPAACMNCHSGWTPW
                     LINNIAKGDFVAFNSTNYWTMIKNVPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVARGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIADDSSKKWWDGTQKNYDEYEFWRDGNQPKEIEANGIMLTFPWNEWKKDQPFRI
                     EMLDDYYDKVRNVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCADCHMPYV
                     REGAKKISQHNITSPLRDINSACKTCHKQSEDYLRAQVRDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQTDGKADASKISEELKEVLELHRKSQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMAKTGQIKLIEIANANGINDFKTSNLGFEDMQKFNPGELYYKV
                     DVNGHKAGERYYGDEIEVNGNPPKELLEHDKNLAPYNYQVIDKK"
     gene            complement(26898..26988)
                     /locus_tag="ACJFEZ_000093"
     tRNA            complement(26898..26988)
                     /locus_tag="ACJFEZ_000093"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26952..26954),aa:Ser,seq:gct)
     gene            complement(27056..27688)
                     /locus_tag="ACJFEZ_000094"
     CDS             complement(27056..27688)
                     /locus_tag="ACJFEZ_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916248.1"
                     /translation="MINKNKLFRQIHIYVSLFFLPCAVLFALTGIAYILGADQDTGLK
                     VETYKLVKNIEPGKEKDALIQYLQENNLKVPSDAEATQGKGKGANIGGIHHNANAAPA
                     NVKAGKGKNNEITIGGAHYSANITPVAQNEYVITLKTRSLLGDMIMLHKDKGAWYFSV
                     LSIGFGIALFLLYISGLIITLFASKKDRQKQLATLGAGVVITILLAYLSL"
     gene            complement(27854..28843)
                     /locus_tag="ACJFEZ_000095"
     CDS             complement(27854..28843)
                     /locus_tag="ACJFEZ_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HGG0916249.1"
                     /translation="MKKSLVFAFFAFFLSLILTACDSKSNENNASTAIKTSTTVKVIP
                     ISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFHALRLNDKVAGVPAKNLPK
                     YLQQFKDKPSIGGVQQVDFEAINALKPDLIIISGRQSKFYEKLKEIAPTMFVGLDNAN
                     FLSSFENNVLSVAKLYGLEKEASEKIADIKNEIEQAKSIVDEDKKALIVLTNSNKISA
                     FGPQSRFGIIHDVLGINAVDENVKVGTHGKSINSEFILEKNPDYLFVVDRNIIVGNKE
                     RAQGILDNALVTKTNAATNNKIIYLDPEYWYLASGNGLESLKTMILEVTNAIK"
     gene            complement(28858..29613)
                     /locus_tag="ACJFEZ_000096"
     CDS             complement(28858..29613)
                     /locus_tag="ACJFEZ_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0916250.1"
                     /translation="MIRLQNITKCYDQKAIISDLSIDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPDSGRIYIDGMNLALYKEQDLAQKISILKQQNHINLRLKVEELVAFGRFP
                     HSQGRINLNDKMKIDEALEYMGLNTLRNEFLDSLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKNGKLLKQG
                     LKDEIIQEDVLRQIYDMDIPVSQIDGKKICIYF"
     gene            complement(29610..30548)
                     /locus_tag="ACJFEZ_000097"
     CDS             complement(29610..30548)
                     /locus_tag="ACJFEZ_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HGG0916251.1"
                     /translation="MRKKILILAFLTLIMALVFVFAGLKDFDEYALKNRFLQIAAIVI
                     VAICIAISTVIFQTLCNNKILTPAIIGLDSLYMLLQSTLIFSLGSANLSVYRNDINFL
                     ITLACMVVFSLGLYKILFSSDKSIYLIMLLGLIFGTLFSTLSSFFEILIDPDEFMIIQ
                     GRMFASFDNVAFDVLALAYIVTLLSFIWIFRYMKFLDPLSLGKDLSINLGINYQKISK
                     HLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLLACILISILALLGG
                     VFFVSRIFDYNTTISVIINFLGGIYFIYLVLKGNKL"
     gene            complement(30541..>31501)
                     /locus_tag="ACJFEZ_000098"
     CDS             complement(30541..>31501)
                     /locus_tag="ACJFEZ_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916252.1"
                     /translation="KHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEII
                     LLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIFFTG
                     ASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFAYAL
                     NYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVS
                     YNTILFLGLIIVSIITSVVIVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGAL
                     FLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKTYA"
BASE COUNT        11026 a         4663 c         5225 g        10587 t
ORIGIN      
        1 aaaataaatg aaaaaaataa gcttaatcct tgcttgctca atgtctttat ttgctgctag
       61 caattctgaa atcagtgatt tttattccaa aagcattaaa gcacaatttc caaatgcaac
      121 agtgagtgta ggtaatcgcc aaaaggttgg aaatacaggt tttgaaagcg taattgttac
      181 gataacgctt gaaggacaaa agcaagagca aattcttttt acaaaagata atcttatcgt
      241 tcctgatatt attgatttaa aaactaaaac ttcttatgct caagaatatg aaatgaaaaa
      301 attccaagag gctagagcaa atttcactaa aaatgttaaa cctgtagttc aaaaagaaac
      361 aatgcttata gctttaggcg ataaaagcaa acccgctatt tatgtatttt cagatccaga
      421 atgtccttat tgtagagatc atttggcaca gattaaagat gagcttaaaa attatcaagt
      481 caattatatc ttaaccccag tgcatggtaa atcagctttt gaaaaatcag cattgattta
      541 caaagagagt aaaaaagcta agagtgatga tgagaaaata gctattttaa ataaatatta
      601 tgacgcaaat atcaaatctt atccaaaggt gagcgatagc gagttaaaag aagtattttc
      661 tctttatgaa aaatatcgtt ctttaggcct tagtgctact ccaaccatca tcaaataatg
      721 agaaaaattc gtctaatttc agttttattt ctagcactct ttttgagtgc ttgcgcaaag
      781 cctgcctttg ttcaaagctc tatacaaaca agcaatgaag gcattttttt aaaggctaaa
      841 caagggcaaa gttttagtat cactttgcaa aatccaagca aaattcaaag tactctaaaa
      901 gatgaattag ctttaagact taaaaattta ggattaaaag aagtatcttt gaatgccgat
      961 tatgaaattt taatcaatct tgtagatttt aaaaagcatt cctacgctca aagaattaca
     1021 agttcgggaa gattttttta tgattttgat ccttttgaaa ataatgggga atggtatatt
     1081 gaaaattatt ataccatgca agtaaatata caaattggct ctaaaaatac tctgcaaaaa
     1141 acgagtttgt ttactcgcac agcttatctt agtgataaaa agcgttgtca gctttcctta
     1201 gaaaataaaa ttatagatca aatttcaagt tttttttatt tttgatttaa attttacttt
     1261 ctaattcttc tttatttgtt agcttgctat caaatttaat gactagattt tttgagtttt
     1321 tgtatatatc tacaacgcct aaatttttac caaattcgct caaatttaaa gtcgtttcta
     1381 aaggcaaata aatattttta aattcagaag gattttttaa atataacaaa gctataaacc
     1441 aaacaataga caaaatcact aaaataatag ccagtaattc taatttatta agatgtaaaa
     1501 atatacctcc tattatacct cctataaaac ttccaccata tccaaaagca ttaaaaagtc
     1561 ctaaagctgc gcctttttca tgtactttac aaaatttaga agcacagctt tgcataatgg
     1621 gctcgtgcaa gttaaaacct ataaaaaata tcacaaccgc aacgataaag aaagtaattg
     1681 tgctagaaaa aacaaaaaag atataagaaa ggataaaaaa agctatccct aaaagtaaaa
     1741 tttgctttgc taagcctctt ttttcgccta aacttcctga aaatcccatg gcgataaagc
     1801 ctgctatcat agatgctgta taaacaatcc aaagtttatg ttcatcaaag cctaaatgtt
     1861 ttactaaaat gataggaatg cttaaaaatg ctatactcat aagcattttt tgcatgaaat
     1921 tagtaaaatt cattagggct aaattttttt gtttaataag atgaaaaaaa ggagttttgg
     1981 tattttcatg ggtgagttta ttttcttttg gaacgacggt ataaagcaag ataatacaca
     2041 aaagcgataa aacagcacta agatcaaaaa gactagaaag cccccattta gcactcatta
     2101 aaggcgagat taccatagaa gctgcaaaag atagtcctat aaaagatccc attattgcca
     2161 tagctttacc gcgattttct tcagtgataa aatcactaat cattgctgta gctactgcac
     2221 caatagcccc tgcaccttga agcattctgc ctattagcat tgtataaata ttatcagccc
     2281 aagagcagat taaagagcct atgataaaga taatcagtcc tataagcatg gtttttttgc
     2341 gtccaatttt atcacttagt attccaaaag gcatttgtaa agccatttga gttagagcat
     2401 aaacacccac tagaagtcct actaaaaatt catttgcacc ctggagttca agagcataaa
     2461 agctaagcac aggcaaaact ataaaaagtc caaaaaatct tgttccaacg ataaaagata
     2521 ggggtaagac attatttagc attatttggt ttcctaaaaa tcttaaattt tacaaaaaaa
     2581 gataatttta ctatgaatta tattaaggat tgttaagttt tttattttat ctttttaaaa
     2641 ggcttaaaaa agtaagattt taatttttta aaaggatggg tttatgaatc gttttcaaac
     2701 tttttctttg gcaatggaag gtaaagtaaa tatagagctg ctggcagctt ataaagataa
     2761 aattgaaact ttaagcgatg aaacattgtt tcgtttttgg tatttagaat tgaaaaatcc
     2821 tattataggg cttattttag gcgtagtacc tgcttttatt ttatcagggc ttacttttga
     2881 tcgtttttat aaaggggata tggggcttgg ttttgcaaaa atggcaatgt gggcttttat
     2941 ttttataggt ttacttattg caggtttttt tgattcatct tctatgcttg tagtatggat
     3001 ttttaatatc gtcgctcttt ttatatggaa tatacttgat tttttcttag tttggcaagg
     3061 gattaaaaat gataatttag cgaaaataat tcaatttttg gagcaagata atgaaaattt
     3121 tattagcaac aagcaataaa cacaaagtta tagaattaaa agaactttta aaagaatttg
     3181 aaatttatgc ctttgatgaa attttaaccg cctttgaaat agaagaaaat ggcaatagtt
     3241 ttaaagaaaa tgctcttata aaagcaagag cggtttttaa tgctttggat gaaaatcaaa
     3301 aaaatgaatt tattgtttta agcgatgata gcggaatttg tgtcgatgtt ttgggcggta
     3361 agccaggaat ttattctgcg cgttttagtg gtaagggaga tgataaaagc aatcgtgatg
     3421 agcttgtaaa acaaatgaga gttttgggtt ttgaaaaaag taaggttcat tatgtagctg
     3481 ctatcgcttt ggtaagctta gagggtgaat ggacaatgca tggaactatg cacggacatg
     3541 taattaacac agaaagaggt gaaaatggct ttggctatga tagccttttt atccctaaag
     3601 gctttgataa aactttagca gaacttagcc ataatgaaaa aaaccaactt tcgcatcgtt
     3661 ttaaagcttt ggaacttaca aggattgttt taaaagtttt aaataaagga aaagggtgag
     3721 aaattttatc aagtatattt tagtggttgt atttatttat gtgctttatg cgggtttaaa
     3781 gctttggttt tcttagtata aattgtaacc aaaagacttg gaagcaaaaa taagcttcca
     3841 cttaaaagta aaatcatcac aaatacagtt aaaactccaa aataaatcgt aggaataaaa
     3901 ttactactca tcataacgct aaaacctaaa actataccaa tggttgtata ataaagtgcc
     3961 gatcctatgc taagatgtga agctaaaatc gcttcttcta cgcttttggt ttttatttct
     4021 tctttaaaac gatagatata atgtatggta tcatccacgc ctatacctat ggctatagca
     4081 gctatggtaa tactcatcat atctaaaggt atgcctaaaa ttcccataag ggcaaaaacc
     4141 atacttaaag gaatgatatt aaccagtagg gcaataattg aaaatttcaa gcttctaaaa
     4201 ataatgataa acaatacaaa gataactaag ataacaaaaa caagtgtatc aaattgtgat
     4261 gaaaaaagac tttgaagcat attattataa agtagcataa tgcctgtgat ttgaatttcc
     4321 acaccatcat tttttaaaag tgtttcgagc tcttgcttga gatttgttag aaattcatta
     4381 cgccttagtt ttggatcaga atctataatg cgtatgctaa atcttaactc attttcttct
     4441 atattaacaa agggtgaaag aagttcttgc ttaagttctg ggggtaaatt ttcgtttaaa
     4501 aacgcaagag taaaatcatc taaatccttg ccatcattga tattttttcc tagacttaaa
     4561 aggctattaa gacttaaaac cgaacctatg aattctttat tttctaaaaa ttcatgcacc
     4621 ttttttgcaa tacgcgtttt ttgagaattg aaccaataag tatcctttgt tgctagagca
     4681 tcaaattcgc tttcaaagct atcaaataca tcatttaaac tagggttgtt tttattatca
     4741 ggaaaacgaa tgataatatc caaaggcagg gttccgccta aatttttatc aataaccaat
     4801 aagccttttt tgatttcact tccatcttta aaataattta caaaagaatt ttcaactctt
     4861 agtttagaaa ttcctattag agccaagata atagtagtaa tagagagtat gtatataata
     4921 gagcgttttt taggatctag gcttgtttta gcacaaaaag ctaagaaatt aaatttaaat
     4981 tcttttttgt agtatttttt gagtttaaga agcactaaaa tacttgctaa aaataaatag
     5041 ctaaaaataa gtgcaagtcc tatacctata ctcatcataa taccaagttt tatgataggc
     5101 tctatatttg aaagcatgag ggagaaaaag cctatcatgg ttgtaatgat ggcataaaaa
     5161 ctaggatttg cttttgcaag tagggtttga agtacaaggc gttcgatttt agcttttgga
     5221 taaagcttgc taatttctat aaaatgtgtg atgaggtgaa tgactacgct tagagtgatg
     5281 attaagacca aagcaacata gtttgaagaa ataaccgtga tttgaaaatt taaaagagca
     5341 aaaacgccac ttgccgcact taaacttata aaacaaataa agagaggtaa aaatacaaaa
     5401 cgccacgcac gaaaaaagca ataaagtgca catgctaata aaaacacaag agaaattcca
     5461 tagagcatga gatcagattt tatataagtt atcatatcat cagcaatcat actcaccccg
     5521 ccaagataga atctatcctc atttttttca tattttttga tgatattttt gattgtatct
     5581 aagccttgtt ttgtaatgat tttttgttgt tcttggtgtt ttttaattgc taagcgaatt
     5641 tgctcttttt tattctcatc tgtgctaaga tcgcgttttt ctatgagttc attatagatt
     5701 gtatcgggtt taagatagat gataagtcct gttgttttgc catcttttga aatgatattg
     5761 tttttataaa aaggactgtt taaaatttca ttttgagctt tggtgaggtt aatatccttg
     5821 ctttgtatat tgggaatatt ttttaaaagt tcttttaagt ctgtattttc tgaactttgg
     5881 agcaaaggag cattgataat gctaaaaaca cgcttgacta atgaaacttg ttctaattct
     5941 tgatgaagct cttttaattt gtttaaattt ttacctgaaa aagggttttc atcttcaggt
     6001 ttaaaagcta aaagtaaaaa attatcactt ttataatgtt tagaaagttc tctaaaaatt
     6061 tttaaatctt tatcatcctc taaaagcaag ctttcagcac ttgcatctac gcttaattta
     6121 gaagcgaaaa agcttaaaaa taagcatata aaaagagtag caaaaaaagt actttttgga
     6181 tgataaataa aaatttttaa gaatttcgca aacattattc tatggttata ttctcaagtt
     6241 tctgaagtag agtatcaaaa tcttggtttg ctaaaatatc cccaaattga gatctatagg
     6301 tttgaactat actaacaccc aaaacatcga tatcgtagat aagccaatca ttattattgt
     6361 tataaaattt aaagatgata tttttttctt ccccatctac tatcatcgaa gaggttaaaa
     6421 aatatcgttt tgcgtttttt aattctccat tttttaccat taaaacttga tccttataaa
     6481 gatcgagttt atctgtaaag ctttttttaa ggcttgcctc aaaagcacta gcaaattttt
     6541 cttgttcttt agggtttaat ttagcataat ctttagaaag gctcagttga gccatgagtt
     6601 tataatcaat tatatgatca aaaattagaa aaattccatc agcagcttgt tttttatctt
     6661 ctttgttgtt ttgtagaagt tgtagacttt tattgatatt tttttgcatg gtattagaaa
     6721 tttcatctaa ttgtaaggca aaaatattta aagataaagc tagaattaaa aatatttttt
     6781 tcattttttt cctttattta ctaagttcat tgcgtctttg ctcgtaagca tcgcgtataa
     6841 acggatataa gttaggagtg ttataataaa tctcatcaat ctcatcaagt ctaaagctaa
     6901 gttcatttcc aaagccatag gcgcttatgg ctatgcttgc ccaagtggga tcgatataag
     6961 ctgttgggct tgcataccaa gttgcaggta gggttaatgt atctcttaaa ttgctaggtc
     7021 caagtatggg caaaacgata tgaaaaccgc ttcccactcc ccaatgcgct aaaacagttc
     7081 ctaaatcagc agggtgtttt ttaagtccca ttttacttgc aggatccata atcccaccaa
     7141 aacccataat ggtattagca ctaaatcttt taaattcttc tcctgcttct tcaaatttaa
     7201 attgcaagac attgcctaca aagcgcaggg gtgcaaataa attatcaaaa aaatttctta
     7261 cgcccgtgcg aataaattca ggagtgatag cattgtagcc tttaagaata ggacgaaggc
     7321 tataatcata caaagctaca ttaaagcttg tcattgcttt attgtaccca taaagtgggt
     7381 catttacttt atagctttga tactcttctt caaaatcatt taaatcaagc tcatttgcaa
     7441 aagcaaagat tgtgctaaag agtaaaatac aggatattaa ttttaatttc aaataaaact
     7501 cctaagatta aaagccgtta ttatagcaga ttctaatcaa tatgaatatc ccagtaaaat
     7561 tcaacccatt ctttagcttc ttttacctta aattcgggtt ctaaaagtgc agttttttta
     7621 taaaaaatcg tagcaacttt aagttctata tgtggaaatt tttcaagtaa aaccttttta
     7681 atttcagcca aactttcccc actatctaca atatcatcaa tgagtagaat ttttttgtac
     7741 ttgctaagat caggaatatt aaaaatctca atagtatcaa gtttttttgt atcatcatag
     7801 tggatagaat ttagagcaaa aagcttgcgt gtttgaagag caactgctaa agaatgtcct
     7861 aaactcattc ctcctcttgc tatggctaaa agtgcatcag gattaaaatc ttctttgatt
     7921 tctttagcca aaatttttac atcttcttta aattcttcat aagaataaaa aatcattttt
     7981 gtcccccttt tttttattgc aaagcaatga gtaagaaatt tcctaaggaa attaagctta
     8041 aaactataat accaagatta atcttatccc attctctctt aaaaattcga accaataaat
     8101 aagaaagaaa accaaaggca aaacctgtgg taatcgaata agtaaaaggc atcataatga
     8161 tagtaaaaaa gctagctact gcaatagcac tgtctttaaa gtctatattt ttaacttcca
     8221 taaacattaa aattcctacc attacaagta caggatatat agcatttgcg ggaatagctt
     8281 taaaaagtgg gagcaaaaaa agtgtgaaag caaagcaaat agccacaact aaagcggtaa
     8341 gtcctgttct acctccactt tcaacccctg ttgtactttc tacaaaagca gttacagtcg
     8401 aagttccgcc tagtgcacct agagctgaac ctgtagcatc tgccataagg gttttaccta
     8461 gttttttctc tccatctttt gcatcatcaa aaattttacc cctctcgcct atacccgtga
     8521 tagtgcctat gctatcaaaa agttgagtga taaaaaaagt aaggataata ggtatcatag
     8581 tgatatttaa agcacttttg atatcaagtt ctaaaaaaat agctcctaag ccattgtcac
     8641 tactaaaatt aggtaaagaa aggatttgct taggaaaact tgcattatca atcccaaaaa
     8701 tccaagctat aatagagctt attaaaattc ctaaaataaa agcccctctt agttttatag
     8761 cccaaaaaaa tacaattaaa atgagggtaa aaattccaaa aagcacatgg ggatttttaa
     8821 aatttcctat gctgactaaa gtatctttat ttggcgttat aatgcccatt tgacttaagc
     8881 ctaaaaaagc gataaagcat ccaatccctg cgcaaatggc taagcgcaaa tctttaggta
     8941 tattgcgtat aacccaaagg cgaaaggggg taaaagaaag gattagaaaa ataatacttg
     9001 agataaagac tgcccctaag gcactttgcc atggtatttt ttgtcctaag caaactgcaa
     9061 aagtaaaata agcattcaaa cccattccaa cactcatggc tactggagta ttagcaaaaa
     9121 aggcattaaa agcagttgca acaatagtaa ttaaagcagt tgcagtaatt aaagcttcta
     9181 tcggcatgcc tgtattgcct actatgcttg aatttacagg aatgatataa accatggcta
     9241 aaaaagttgt taatcctgct acaacttcag ttcgaacatt ggtaccattt tctttgagtt
     9301 taaaaaaatc cattttttaa tccttagtag gtttgtagtt cattatataa actatcgcgt
     9361 tctacaggag ttaaatttgc tgtttttatc atttctataa aggtttttag attggtaccc
     9421 ttagcagatt ttgctcctcc tgcactttgt atactttctt tttctatagt gccatctaag
     9481 tcatttgcgc caaattcttg cgcaaccatg gctaaattta aagtcatagt cgcccaataa
     9541 gctttaatgt ttttgatatt atcaagtact aagcgagaaa tagctatggt ttttaaaatt
     9601 tcttcactat ccattatctt atctgtttgt atgtaactat tatctctttg ccaaaccaaa
     9661 ggaataaaag cattaaaacc cccactttca tcttgcaagg cacgaagtct taacatatgg
     9721 tctatcctat ggcgtctttc ttcgatatgt ccaaaaagca tagtagcatt gctttgtctg
     9781 cctttatcat gccaaagttt gtgaattttg agccaatttt cactgcttac ttttccatgg
     9841 cagatttttt tgcgtatttc ttcatcaaaa atttctgctc cacccccagg catagaatcc
     9901 acgccgtatt caagcatttt ttctatcact tcttcatagc tcattttaaa acggcgatgc
     9961 aaaaagtcaa tttctgccgc tgtcatagct tttatatgca tttgagggta tttttcctta
    10021 atcattttaa aaatttctaa ataccactgc caacttgtgt ctttattgtg tgctgaaaca
    10081 atatgcactt ctttagtgcc acgagttata gtatcatcaa ctattttcat aatttcttca
    10141 tggctcataa gataaggatt tggatttttt cggtgtgctg aaaaagcaca aaatttacat
    10201 gtatctgcac aaatatttgt aggatttata tggcgattta tattaaaata cacctttttt
    10261 ccatgaagct tagtgcgttt tttgtgtgcg aatttagcta aggtaaaaag atctaaatcc
    10321 catagagcat ttgcttcatt ttcatttaat ctttcttcat tttctagttt ttcaagtaga
    10381 tttttcattg attttcactt ctataaattt ttagaatttt tgaaaaaaca ttataaattt
    10441 tgcttactga aaaagagttt atagcaaagc caaaataaaa gatatttttg ttaaaatctt
    10501 ataaatgaaa ttttaaaaga gagtaaagat ttgttaaata aagaattaga actttttaag
    10561 aaaaatctca atacctatgc gcaaaactat agaaaatttt ttttaaaaca aggatcattt
    10621 agtctgtatc attctaaaaa tatggataat tttttaaaaa aaacttatga tatagtatta
    10681 aaggaatgtt ttgaaaattt tttgcctaca agcgataata tacccttttg tgttttggca
    10741 agcaaaggat atgcaaaaaa taatctttgt gcaaatgaaa gcgtttcttt gatttttgtt
    10801 tataaggata ttaaagctta tcatttaaaa cctatgatta aagcttttat agagatatta
    10861 aatgatgtgc atttgcaaat tgattatgtg gttttagaac taaatggact ttataatgct
    10921 agcaatgagc ttaaaacaac cataataggt gctcgcttta tatgtggatc taaaatttta
    10981 tttaaatcag tcaaggaaaa atttgacagc atactccatg caaataaaaa tgaatttgct
    11041 caaattttac ttgctaattt taaagatttt aaccttcctt ttatcaagca agaattcaac
    11101 ataaaaaaag attttggggg cttagatcac ttacgagctt tagaaagctt gttaactctt
    11161 tttaaaaatt cccctaaaaa ttatgcttta aattttatgg atgaaaaaaa tgtaagcgag
    11221 ttgcgcttag cggcggattt tttattgtcc ttaaaatctg ctataaattt gcaaagcaat
    11281 aaagatcaag acgaattttt atttagcaat attcacgaga ttgcagaatt gatgtataga
    11341 aagggcaaga aaaatttaga tgctgaaaaa atcttagtgc aaaaagcctt gcaaagtatg
    11401 catactatag gtttttatac ccatttttta gcttataaaa ttcaaaatga attacaaaat
    11461 attgcacaaa aacaataccg atttaaaaat ttagcagaag cattaacttt tttgttgggt
    11521 ttgaaagatc aagatattgc ttttgattta gatttggttt ttgctcttaa aaatttaagt
    11581 tatgaaaaaa aggatttaga gaaagcttta gctctttttg aaaaaatatt ttataaaaga
    11641 catagttttt gtattttaaa acttttactt gatagtggaa ttttaaaaga attatgcaag
    11701 ccttttggta tggtgcgttt tttaagcgat gaggaggggg attatagttt tgatgagcaa
    11761 gcatttttgc ttttaaaaga atttgaaaaa tacgaagatg aacttgagag tttgaaaaat
    11821 ttaaatacag atgagaaaat gattttaaaa ttagtcatac ttttaagcgc aattaacaat
    11881 gaaaatgaaa tttctttagc gagtatatat agggcttatt gtattaaatt taatctaaaa
    11941 aatgatgttt ttgaacttgg gcttaggatt tttaaaaatc acaatgcttt aaaagagctt
    12001 gccgaaaaag aagacgttta taatcctatc attatatgtg ctttgctttc taaggttgaa
    12061 aatttaaaaa ccttaaagct tttacatact cttacttggc ttaaagcaaa agctttaaat
    12121 cgtaatccat ttttttataa ggttatagat agaattttag aaaatgctaa acaaggtttt
    12181 gatgatgaaa atttacttga tgaaaccgca aggcgtgtaa aaaaagaatt aacactcaaa
    12241 agaacaaagc ttttcttgga gcaaaatgct attttacaag ataagatcac tcatataaaa
    12301 tccaatcttt ttatcatcaa aaatactttt gaagatattg ttgaaattgc acgatttgca
    12361 aaggaaaatg attttaaatt ttggtttagc aatagtacaa atttaagtct tcagatcgtt
    12421 gcttttaagg attttaaaat agaaattgtt ttgaccgctt tagcaaattt aaatttagtt
    12481 tttatgaatt tatttgagtt atttgatgat aaaatttatt taagatttga gtatgataat
    12541 atcattacag atgagcaaaa aaacaaactt tgcgagcttt taaattcaaa tttaagtggt
    12601 ttttcttcaa gaaagatcaa aaagccaatc attaaaaaag atgagttaaa attggattta
    12661 aattattcta aaatctatgc aaaacttagt ttaaatacta aagatcaaca aggtttgatg
    12721 gcatatatga tgaatatttt taacgagtta ggtttggttt tatctgcagc aaaaattcaa
    12781 accatacgcc aaagaacgcg taataccttt atttttcaaa aaaatgaaaa tttggagaaa
    12841 aatgaagaaa aattgttaat ttctttaata agtgagtaaa tcatgtgtgg aattgtaggt
    12901 tatataggaa aaaatgaaaa aaaacatacc attttaagtg ggcttaaaga gcttgaatat
    12961 cgcggttatg atagtgcggg tttagcagtg atgaaaaatg gagagcttga ttttttcaaa
    13021 gctgtaggta agcttgaaaa tttggccaat aaatgtgcaa attttacaag tgaggaattt
    13081 ggttttgcta taggtcatac acgctgggca acccatggaa aacctaatga aatcaatgca
    13141 catcctcatt tgggtcagta ttcttgtgtg attcataatg gtattataga aaattataaa
    13201 gagattaaaa acaagcttga agaccaagga gtgagttttc taagccaaac agatacagag
    13261 gttatagttc aactttttga attttatgca gaaaaaatgg aagttttcga ggcttggaaa
    13321 aaaacaatag aagaacttag aggtgctttt gccacacttt tagtgagtaa aaaagatcct
    13381 actcgtgtat tttttgctaa aaatgccgct cctttaattg taggaaaatc tcaaaataat
    13441 gaattttatt ttgcaagtgc tgatacgcct ttgatagggc tttgcgatga ggtaatttat
    13501 cttgaggatt taagcttagg ctatgctaat gaaaaggaac ttgttattta tgaaaataat
    13561 caattaaaac aaaattcctt taccaagctt tcaggcgata aagcttatgc aaaaaaagat
    13621 ggttttcgct tttttatgga aaaagaaatt tatgagcaaa gtcgcgtaat gagcgaggtt
    13681 ttgatggggc gcattaatgg tgatgaggtg gtttttgatg agcttgaaaa tgaggattta
    13741 agtacagttg atgaaatcac actttgtgct tgtggaacta gctatcatgc tgctatggca
    13801 agcgcgtatt tgtttgagcg tttggctagg gttaaggcta aggtagaaat tgctagtgaa
    13861 tttcgctaca gagaagccat tattaagcct aattctttat ttatcgtaat ttctcaaagc
    13921 ggagaaaccg cagatacttt agaagcctta aaaattgcaa aagagcaagg aactaaaaca
    13981 tttgctattt gtaacgtgga taattccaat atagtccgtt tggcacactt aagtcttcta
    14041 acgcgcgcag gcattgaaaa aggtgtagct tcaaccaagg cttttgcaac tcaagtttta
    14101 acactttgga tgttggcaat ttttattgct caaaagaaaa aaattgatat gagtgcccaa
    14161 atcaaagctc ttttacatac tcctaattgc gttgcggtaa gtgctaaatt acatgaaaaa
    14221 attcatcgtt tatctaagcg ttacttagac ggccatggat ttttctttat aggtagagat
    14281 gtgttctatc ctttggcttt agagggagct ttaaaattaa aagaactctc ttatttgcat
    14341 gctgaaggtt atcctgcagg agaaatgaag cacggaccta tagctttggc tgattctaag
    14401 ctttatacta tagctttaat gcctaaaacc ctactttatg aaaaaaccaa atcaaatgtt
    14461 gaggaattga tagctaggga ttctactgtt ctttgcgttt ctcctttgga ttttgattta
    14521 agtgatgatt ttataaaaac caacgagcaa gatcattata tgtgtgaatt ttttgaaatg
    14581 atggtgatca ctcaacttct agcgatggaa atttctataa gacttggcaa tgatgtagat
    14641 atgccaagaa atttagcaaa aagtgtaacc gttgaataaa ccccgtgcag ttataaaact
    14701 gcacataaac tctcataaat tccaaaaaaa taaataaatt ttaaattata agctaatttt
    14761 atgcttattt ttgtttaaat aattgcataa caattttcta gaaaggaaac ctaatggaat
    14821 atagaattga acatgatacc atgggcgaaa ttaaagttcc aaatgacaaa tattggggtg
    14881 ctcaaacaga gagaagtttt gaaaatttca aaattggttg cgaaaagatg ccaaaggtgc
    14941 taatctatgc ttttgcaaat cttaaaaagt ccttagcttt ggtaaataat aaacttggca
    15001 agctagatga tgctaaaaaa agtgctatag ttcaagcttg tgatgagatt atcgcaggta
    15061 aatttgatga taatttccca cttgcaattt ggcaaacagg atcaggcaca caaagcaata
    15121 tgaatatgaa tgaagtgatt gcaaatcgtg caactgaaat catgggcgga gattttcgta
    15181 aagaaaaact tgtacatcca aatgatcatg taaatatgtc tcaaagttct aatgatactt
    15241 tcccaactgc tatgagtata gttgcagtag aacaagtgga gaaaaagctt attcctgcac
    15301 ttgatgagct tattgctact tttgaaaaaa aggtaaaaga atttgaagga attatcaaaa
    15361 taggacgcac gcatttacaa gatgctacac cgcttacttt agcgcaagaa ttcagcggtt
    15421 atctttctat gcttttacat tcaaaagagc aaattatcgc ttctttacca accttaagag
    15481 aattggcaat aggcggaaca gcggtgggaa caggacttaa tgctcatcca gaactcagtg
    15541 aaaaagtgag cgaagaactt agtaagctta taggtacaaa atttgtttca agtccaaata
    15601 aattccatgc tttaacaagc catgatgcta ttaattttac tcatggagct atgaaaggct
    15661 tggctgcaaa tttaatgaaa atagcaaatg atatcagatg gttagcttcg ggtcctagat
    15721 gcggacttgg tgagcttaat atccctgaga atgaaccagg aagttctatc atgccaggta
    15781 aggttaatcc tacacaatgt gaagctatta ctatggttgc ggttcaagtg atgggaaatg
    15841 atgcggctat aggttttgct gcaagtcaag gaaattttga acttaatgta tttaaacctg
    15901 tgattatcta taatttctta caaagtcttg atttacttgc tgattctatg cattcattta
    15961 atattcattg tgctgtaggt atagagccaa atcgtgaaaa aatagaatac aatctacaca
    16021 attctttaat gctagtgact gcattaaacc cacacattgg atatgaaaat gctgctaagg
    16081 tagctaaaaa tgcacataaa aaaggtattt ctttaaaaga aagtgctatg gagttaggtt
    16141 tggttagcga agaagacttt gctaaattcg ttgatcctgc taaaatgata ggaccaaaag
    16201 cttaaatcta gtttgatgtt tctctcttac gcgagagaaa cattttttat tttaaattaa
    16261 attcttatct tttaaaatca tataaagtct tattgttgaa ataaaaaaag ttaaaattgc
    16321 aggtcctaaa ataatacccc aaaaaccaaa agttgaaatt ccagctatca tggctaagaa
    16381 aatcaaaagt tcattgattt tagcgggtgt ttttacgagt ttttcattaa tccatttaat
    16441 gattaaaggc ttaactaggg tatcagcgat aaaagagata acaacaacag aataaataaa
    16501 aataacaagt gcagaaccaa gaccgcttga agcaaattca taaagactta tagggatgta
    16561 caccaaagct ccacccaaag ctggtatgag agagcttaca gcaaaaatta cacccattaa
    16621 gatggcatca tatccataaa acatagcaat gatgctaaaa agtgctcctt gaagtatggc
    16681 gataatgatc atagaataaa gcaccacggc cataacatta cccacttcgc ttaaaatatc
    16741 atcaagttct tgtttgtcga taggaatgac agattttata tagattacta attctgttcc
    16801 atatagatta gcaaaaaaat aaaatataca gattaacacc atatctataa gaaatttagc
    16861 tcctgatttt gtaaaacttg aagcataatt taaaatttgt ttagaaatgc tatttaagtc
    16921 tatagaagct agaaattctt tgattttagg ttctaaaaag ctaaggcttt cgggtagggt
    16981 aaattgataa tttttaacat aattgagcgt ttgtgtgaca agattgatat caaaattctt
    17041 taaagcctta gctagctcga tcatcgcata gacaaaggga gcgaagaaaa gtaaaaccat
    17101 acatgcagtt gttagcatag aggctaaaaa tttacgccca tttgttaggc ttaaaaattt
    17161 agcatttgca tttgaggtag caactgccat taaacttgca atgataataa caagtaaaaa
    17221 acccttaaaa agataaagta aaagggataa aaccactaaa ataaaacaga taagaaaaat
    17281 ttttccagtt tgcatttttt tccttcaatt ttcatcaaat aaagtttgtt cgtaattaag
    17341 cttaagtaca ctaaaacttt ttgtacttgc tatacgacct ttggcagtgc gttctatgta
    17401 gccatttgca agcaaataag gttcgattac atcttcaata gtattttcat cttcactcaa
    17461 agctgccgct atactagaaa gtcctatagg ctttctttta gcctctgtta aaagctctag
    17521 atatcttaaa tccatcgcat caaaaccaag ctcattgaca cctaaagaat ttaatgcttc
    17581 tttagccctt tctttggtga tcgtttcttc gtcatttaca tctgcaaaat ctctcactct
    17641 ttttaaaagt ctaagtgcga ttctaggggt agagcgactt cttttggcaa tctcaagtgc
    17701 agcttcattt tcacagcttt tattgagctt tagtgcagct ttttgaagta tgatagcaag
    17761 ctcttcatct ttataaaatt caagtctaaa ttgcattcca aaacgatcac gtaaaggatt
    17821 gctaagcatt cctgcacggg ttgtagcgcc aataagtgta aatttaggca aatcgatttt
    17881 tatagtttgt gctgcagggc cactacctat aatgatatca aggcggtaat cctccattgc
    17941 agggtaaagt acttcttcga tagcagggct taagcggtga atttcatcga taaaaagtat
    18001 atccccttcg ctaagattag ttaaaatagc ggctaaatct ccgctttttt ctatcatagg
    18061 agcggcggtt gttttgatat ttgcacccat ttcataggag atgatattgg ctagtgttgt
    18121 ttttccaagt cctgcaggac cgctaaaaag tatatgatct aaacattcgt tgcgtttttt
    18181 agctgcagct ataaagacat ttaaattttt tttaatgctt tcttgaccta tataaccatc
    18241 aaaatttgaa ggacgcaacg aagtttcgta agtttcatca aaggagtatt tttctatttc
    18301 tactattcta tccatatctt tgcttatatt ttggaaaaat taaaataaga ttttagctaa
    18361 aatttgctag aatttacatt aaactttaat gattatggtt tgaaaatggg aattttaaca
    18421 aaattagaat tagattatga aattgatgat atagaaaaat ttttacaatt ttttagaacc
    18481 atgtgtgata ggtttgaacc tttaatcatc aagcttggaa gcgatagtgt gcgttataaa
    18541 gaagccataa aagagcttga aactttagca cacaataccg cttgggcagc aagacgctta
    18601 aatcttgaag aagtgactga tttttgtgta ttttgtgaag agatgatggc gcaagcaaat
    18661 cgctttaatg ggcctgctag tgatgaattt acggattgga tgcttttgat gagtgatcaa
    18721 tttgaaaaat attgtcgttc gtatgaaaat gatgattctg ttttagcggt ttttaatcct
    18781 ttaattgtta atgttccaaa tattatttct aaataaggga gcgacttggc ttcgacagga
    18841 gtaagtctgc ttagatggca tgtcgctttg ggcaaagcgt aaaaagccca aataaaatta
    18901 aacgcaaaca acgttaaatt tgctcctgct tacgctaaag ctgcgtaagt tcagttgagc
    18961 ctgaaattta agtcatacta tctagcttaa ttttcggtca tctttgatag tgtagccttg
    19021 cgtttgacaa acgttgaggt gaaataaagt cttagccttg cttttgagtt ttggaagatg
    19081 agcgaagtag ggtgaagtag tcatctttgc taagcatgta gaggtctttg tgggattatt
    19141 tttggacagg ggttcgattc ccctcgcttc caccatcacg ctaattttaa gtaaatcata
    19201 agtttatttc aaatttttag aattttttat atgaagttaa gatcgattta ttacccttaa
    19261 agctttgata tattaggttt tataattttt cattaaaaat ttatagtttt atttttaagc
    19321 ttatttttag ggggggggta taatttttcc ttcagtttaa atttattgaa ggagaaactt
    19381 atgaagaaaa atgcttcgag caagatattg ctaagcttag gtgtagcaac tttgctttat
    19441 tcgggtgctt ttgcagcaga gattactttt aatggcgata gtgatttaga caaatatttt
    19501 gatatcaatg aaaaagacaa tgttgctact tttaaaaatg aaaattataa aaacaagcaa
    19561 gatgtaactt ttaatatcag cacttcagct tttgatgatg cccctgaaga tactaaaatc
    19621 aacattgatt taggcaataa ttctttaact ttgaaaaacc aaatggatta tcaaggcaaa
    19681 acagctgctt tagtaaaaaa tttcaatgta gatgccaaag attttaaaac tactgatata
    19741 ggacttagtt attttaatgc aggaattatt aatgctaatt ttacaatgga aggttcaggt
    19801 aaagattttg atcttggcaa tatagataaa aataaagctt catctttgtt aatttttaat
    19861 ggtagcagag aaaatactaa cgatactgta aatggcagct taactgtaaa tggagacttt
    19921 agcacaacaa atagtgctat tgtttcaatg aaaagcgata cttttaaagt caatggaaca
    19981 gcaacgctta aagaagcagg tcttggattt ttatctcaat cttattctaa tttagatgta
    20041 aatgatttta ttgctttaag agcgaaagac ataaaaacag atacacttaa tgaagacact
    20101 aacgcaggag ctttgatttt aaaaactgca agttcttata taaatgaaaa cttgctaaat
    20161 ggcgatgatt atgctgctta tcttgatgtt acagatgata agaagtatgg aggtgccttt
    20221 gtggattata aacttagcct taaaaactgt ggtggtgata aatgcttagt gattaatgga
    20281 ggtgctactg cagcggctaa aaatttaact aatcaaatcg cagtagatct tgaagctatc
    20341 actagaatca tagatggttt agataatgag caagccaaaa aagccctaca agaacaaaaa
    20401 actgaacttg aaaaacttca acaagaagct atgcaaaacg gtggcaaaat cgatgatgaa
    20461 aaatacattg atttagtaaa taaaaattca aatttaaatc ttagtgctaa tgataaagct
    20521 tctattctag tacttcgttc tatcacagaa caattaggaa gtataggcgc agatttagca
    20581 agtagagaag gtgtaaaact agccctacaa atcaaaaaag acacagacaa tacaggtaaa
    20641 tctgtatcta atttcaattc agcttctagt gcagttaata ccactatgaa tatttctaat
    20701 gatgtttcta taggttctcg tgtagcaatg ttaaacaatc cttttggaac ttatgcttct
    20761 aaaatgaatg gccttaaatt tgctgcttta gatagtgata tgagaccaag ctatgtaaat
    20821 gaatatacca atagtgtttg ggctaatgct tttggtggtg ctaacattat cgatggagat
    20881 agtggtgcaa tgtatggtgc taccgtggga gtagataaac aagctaatga taatgtttta
    20941 tggggtgctt attttactta tgcaaatgct aaaatcaaag acaataatct agaacaaaaa
    21001 agcgataact tccaattagg tatgtattct actatcaatg tagctccgca atgggaactt
    21061 aatcttaaag cttatgctca agtttctcca actaaacaag acaatgttca agtagatggt
    21121 gcatataact cagattatac aagtaaattc ttaggactta gtgctaatgc aggtcgtgtg
    21181 tttgacttta gtgataatac tttatttatt aaaccttttg cgggagtaaa ttattatttt
    21241 agttatactc catctcatac agaaaatggt gctattgcca aagatattga ttctatgaaa
    21301 aataattctg taagtgttga agtgggtgct gaatttagaa aatatatgaa tgaaaactct
    21361 tatatttttg taactccaaa aatagaacaa tttgttatca atagtggtga tgattacaca
    21421 gctaacctag ctgtaaataa tgctttcttt actagtgtag aagctaacaa caagaaaaaa
    21481 acatacggac aaattatcgt agggggtaat gtagatttta caaatcaact cagtatgaat
    21541 cttggctttg gtgctaaaca aatactagca ggtaaagtag ataataaaaa tgaaacttac
    21601 ttaagtggtc aagtaggact taagtataaa ttttaatctt aaaaatcatt tctaaatctt
    21661 tttatagttt agaaatgatt gtttatttct atgggaaatc tcctagggct ttattttaaa
    21721 gtcctttttt ataataaaca agtaaataag tctttagagt aaaaacctta aaaactttta
    21781 gttttctttg aaaagtttag aagctaagtg cgttgcacga ctttgatctg tatctttttt
    21841 aagtgtttta taaattttac tgacatattc ttctaaaatt tgttgtgagt caatcacttt
    21901 ttcattgcta gcaacttttg catattctcc atcattttga agttcataag caagtaaatt
    21961 atcgctgagt tgcaagcgca agaattgtgc taattttgcc ttacttcttt catcatatat
    22021 aggagtcata agctctaaac gacgctctaa atttcttggc atccagtccg cacttgatat
    22081 aaaataattt ggctcactgt gtttaaaata aaacacccta gcatgttcta aatattttcc
    22141 tataatactt ctaacgcgta tgtttttgct gaattcttca ttaggtttta aacagcaaat
    22201 tccacgcacg ataagatcga tttgagttcc ttttatactt gcttcataaa gagcttttat
    22261 gatatcgcta tctacaagag aattcatctt tgcaatgata actccttcgc ttcctttgct
    22321 tgcctctaaa gctatcattt ctagaatttt ttctttgatt tgatttggac tcatagagag
    22381 agtttgaagg cgacgatttt tgctaaaacc tgaaagtata tgaaaaaagc ttgttgtatc
    22441 tcttgcaaat tcaactttgc ttgtaaaata actcacatca gtgtagattt tagcactgct
    22501 tgcattgtag tttcccgtgc ttaaatgcat ataaaattta agcttatcgc cttttttgcg
    22561 tataacttga gaaactttgg catgaacttt aaagccagtg attccataaa tcacatgagc
    22621 tccagcattt tctaaagctt ttgcccagtg aagattgttt tcttcatcaa agcgagcttt
    22681 aagctctacc ataactgtaa cttgtatccc atcgcttgct gcatcgatta aggcttggac
    22741 tatgttagag tttttttcta ctctataaag agtcattctt atagaaataa cctcaggatc
    22801 tttgcttgct tctttgatga acttataaac aggatcaaag ctttcaaaag gttgaatgat
    22861 gagtatatct tctttatcta tcgcatcaaa aatggataaa ttttcatcaa aaggcggtaa
    22921 ggttttaggt gtataaagcg gacttaaaag atgagtaaag gttttattgc cagcaatttg
    22981 ccaaaggcta ggaagattta acaagataga atactcataa acatccttgt ggaaaatttt
    23041 catatgagta ttaagaaatt ctacgatttg ttcatctgca cccttttgaa tttgtaatct
    23101 tacaaaagca ccttttctac gaagttttaa gccttgctct aatatcatca taaaatcatc
    23161 agcttcttcc tcttctatca ccatatctgc atttctagtt accctaaaag cagctgaagc
    23221 aaggagtttg taacctggaa aaatttcttc tgtatgtttt tctactatac tttcaattgg
    23281 aacataaaca ttggcactca cttcataaaa acgaggtaaa actcttggaa ttcgaatcat
    23341 tccaaatttg ataagctcag gatgggtttt atcacaaatt ttaaccgcca aagaaaatga
    23401 aagattattt aggtgcggaa aagggtgagt cgcatccaca gcgattggaa caataacagg
    23461 aaaaatagta gagaaaaaat attcgtcaca tttttgtttg aggttgttgt ctaaattttc
    23521 ataatttttg ataaaaagat tttctttttc aagatcgctt ataatttcat taaaataatg
    23581 ctctaaaaga tctttttctt tgtgaagata tttgcgtata gcttttaatt gctgcaaagg
    23641 agacatctca tcactactgc ttatattaac tccagctgaa aaaagttgtt ttaatccggc
    23701 aacgcgtatc atataaaatt catccaaatt ggtacaatat atagctacaa atttaaggcg
    23761 ttctaataaa ggcaacggac gcgaacattg atctaatacc cgtgagttaa agcgtagcca
    23821 agaaagttct ctatttaaaa acatattcgg atttgtttgc attaaaactc ctttttttgc
    23881 gttattttaa catttatttt tgaaaataat gagtttttta gagaaataaa attcaaaatt
    23941 tttattccgg ttaattaaga gtaaatatat ctttaaattt atcttaaaaa gctatatgtt
    24001 agaataacaa tttcatttat tctgaaagtt taaggagaaa aattttgaaa aaatctttga
    24061 atctttttgg tatttttctt gttttgcttt ttgtgttctt tgcggtagga ttttatacct
    24121 tttataatgc aaaaggtaca tcttacttaa gtaatgcaag tgaatcttgt aacaattgcc
    24181 atattatgaa cgaggtttat aatgaatata tggcagggcc acatgcacaa aaggtaaaag
    24241 gagaagctag ggcaacctgt gttgattgtc atttacccca tggtttcttg gctaagtgga
    24301 tagctaaagc tgaaagcggt ttaaatcatg cttatgcttt tacttttaaa cttgatgagc
    24361 ttcctacaaa tttgagtgca actgaaaaaa gcaggaatat gatacaagat aattgtgttc
    24421 gttgtcatgc tgattttgct caaacagcca tcaatgctac aacaaatcca catgcggaca
    24481 aatctttaaa atgtgcttct tgtcatcaag atgtgggtca caaacatgga atttaattaa
    24541 ggaggaattg aatgaaaaaa aattttttac gcttagctat cgttgtttta gttttgctta
    24601 tagtgggagt tttatggctc aataatgata taaatcaaaa aaaagaagac gaggcaaaca
    24661 aaaatgccat tgctgcaaat gcggattttt ctttacttag cgatgataat ccaaattttg
    24721 aaagatgggg aaaggttttt ccagagcaac ttaaaatgta tttaacagtt gaagaagaag
    24781 agcctaaggc tacagaattt ggtggtaact tatcttattc aaaacttatt cgttttcctc
    24841 aactaacaat actttgggct ggatatcctt ttagtcttga ttttaatgaa gaaagaggac
    24901 atttttgggt tcaagtagat caaatgaaaa ccgcaagaaa taataaagat tttcttaatg
    24961 ctcacggact taaagcattt aagggtcagc cagcagcgtg tatgaactgc catagtggat
    25021 ggactccatg gcttatcaat aatattgcaa agggagattt tgtcgcattt aactctacaa
    25081 attattggac tatgattaaa aatgttcccg ctgttgatgg tatagtagaa aattctccag
    25141 agcatgcagg accgcatggt ggtaagagaa tgggtgtgac ttgtgcagat tgtcataatc
    25201 caaacgatat gagcttaaga cttactcgtc ctgctgcaat taacgcttta gttgctagag
    25261 gttatgaaaa agatccagta caaggcgtaa aagccacaag agaagagatg agaactttgg
    25321 tttgttcaca atgccatgtt gagtattatt ttaaaccaac aggagaaaaa gtaaaagtaa
    25381 tgggcgaaac cattgctgat gatagttcta aaaaatggtg ggatggcact caaaaaaatt
    25441 atgatgaata tgaattttgg agagatggca accaaccaaa agaaatcgaa gctaatggta
    25501 tcatgttaac attcccatgg aatgagtgga aaaaagatca gccttttaga atcgaaatgt
    25561 tagatgatta ttatgataaa gttcgcaatg tatttggtgc ggatttcact cataaattaa
    25621 caggtgcgca aatcattaaa attcaacacc ctgaaagtga gctttatagt ggtggtgtgc
    25681 atgctgctaa tggagtaagt tgtgcggatt gtcatatgcc ttatgttaga gaaggtgcta
    25741 agaaaatttc tcaacacaat atcacttctc cattaagaga tattaattct gcttgtaaaa
    25801 cttgccataa acaaagcgag gattatttaa gagctcaagt tcgtgatata caaaatagtg
    25861 tagcgcatga tcaaagaaca gctgaatatg ctattgttag cctaatcatg gatactaaaa
    25921 aattgcgtga tgagttaggc aatatggaaa aattccaaac tgatggtaaa gctgatgcaa
    25981 gcaagattag tgaagaactt aaagaagttt tagagcttca ccgcaaatct caaatgagag
    26041 ctgattttgt taatgctgaa aattcaacag gtttccacaa tcctcgtgag gcttcaagaa
    26101 tgcttttaca agctgtagat atggctaaaa caggacaaat taaacttata gaaattgcta
    26161 atgctaatgg cattaatgat tttaaaactt caaatttagg ttttgaagat atgcaaaaat
    26221 ttaatcctgg agagctttat tataaagtag atgttaatgg acataaagca ggagagcgtt
    26281 attatggtga tgaaatagaa gtaaatggta atcctccaaa agaactttta gaacacgata
    26341 aaaaccttgc tccgtataat tatcaagtaa ttgataaaaa ataattctta aaagccctat
    26401 attttagggc tttttttata tctttcaaaa taaaatctta taatttttat ctgtttaatg
    26461 tttttatatt ttctatgctt ttaagcagta aatttttata gataaaagtc tatgattaat
    26521 tttgagttgt ttagtacaca cgataagatg gatttataaa aaatatagca cttgcttaag
    26581 aaaaacgaca aaaataattt ttatagtttt ttaaaattag aatttaaatc aatgcttctt
    26641 tgctttaaat agatcgtttt taaatgaaaa ataaccgatt ttattattgg attatacgaa
    26701 aaaagctcat ttattttaga tggataaagt atagaaattt ttatttttaa agcttgcgtt
    26761 atttggttga aaaataagga taaaattgaa ttttatttta ttgattaaga aaaagctttg
    26821 taaagtttat ttttgaaatg caaataatat ataaaaggta attaaaatga tagttgatag
    26881 ttttttttga aagtcagtgg cggacagaga gggatttgaa ccctcgagac ccgattaaga
    26941 tctgcaccct tagcaggggt gtggtttcag ccgctcaccc atctgtccaa taaattaaag
    27001 tgtgattata taaaaaatta gataatacct agcttaaaaa agctagataa aaaaattaaa
    27061 gactaagata agctaaaagt atagtgataa caaccccagc tccaagtgtt gcaagctgtt
    27121 tttgtctatc ttttttgcta gcaaataaag taatgataag tcctgagata tagagtaaaa
    27181 ataaagcaat accaaagcct atgctaagca cagaaaaata ccacgcccct ttatctttat
    27241 gaagcatgat catatcgcct aacaaagatc tagttttaag agttattaca tactcatttt
    27301 gagcaacagg agttatattg gcgctataat gtgctccacc tatagttatt tcattgtttt
    27361 tacctttgcc agctttgaca ttagcaggag ctgcattggc attatggtgt attccgccta
    27421 tattcgcccc cttgcctttg ccttgagtag cttcagcgtc agatggaact tttaaattgt
    27481 tttcttgtaa gtattggatg agtgcatctt tttctttacc aggttctata ttttttacaa
    27541 gtttataagt ttctaccttt aaacccgtat cttgatcggc tccaaggata taagcaatcc
    27601 ctgtaagtgc aaaaagtaca gcacagggta agaaaaataa actcacataa atgtgaattt
    27661 gtctaaataa tttgtttttg ttaatcattt tctctccttt ttgattatca atttgtatgg
    27721 tattttgaca aaagaatgtg aagcgaaagt gaatttttta tagtggatat aaacttaaat
    27781 ttgtttaaga tttgtacttg atagttggat ttggataaga gaatgtaaga gaacaacttc
    27841 tcttacatag ggtttattta atagcgtttg ttacttctaa aatcatggtt tttaatgatt
    27901 ctaagccatt gccacttgct agataccagt attcaggatc aagataaatg attttattat
    27961 ttgtagcagc gttggtttta gttacaagtg cattatcaag tatgccttgt gcgcgttctt
    28021 tattgcccac aatgatattt ctatcaacta caaatagata atcaggattt ttttctagta
    28081 taaattcaga attaatgctt tttccatgtg tgcctacttt tacattttca tccacagcat
    28141 tgattcctaa aacatcatga atgattccaa agcgagattg aggtccaaaa gcggaaattt
    28201 tgttagaatt ggttagaaca ataagagctt ttttatcttc atctactatg ctttttgctt
    28261 gttctatctc atttttaata tctgcaattt tttcagaagc ttctttttct aagccataaa
    28321 gttttgcaac acttaaaaca ttgttttcaa aagagcttaa gaaatttgca ttatcaagtc
    28381 ctacaaacat agttggagca atttctttta atttttcata aaatttgctt tggcgtccgg
    28441 aaatgataat aagatcaggt tttaaagcat taatagcttc aaaatcaact tgttgaactc
    28501 cacctatact aggcttgtct ttaaattgct gtaagtattt tggcaagttt ttagctggaa
    28561 ctcctgcaac tttatcgtta agtcttaggg catggaaagt atctaaaatt ccaagatcta
    28621 aaatcacaac tttagaagga ttttttggaa ttttgttttc acctaggcta tcttttacta
    28681 aaaagctatc accctcatca ctcatactaa taggtataac ctttaccgta gtgctagttt
    28741 ttattgcagt acttgcgttg ttttcattgg atttagaatc gcaagctgtt aaaattagac
    28801 ttaaaaagaa tgcaaaaaat gcaaaaacta aagatttttt catatattct cctttattta
    28861 gaaataaata caaatttttt tcccatcaat ctgacttaca gggatatcca tatcataaat
    28921 ttgtcttaaa acatcttctt ggatgatttc atcttttaaa ccctgtttta agagttttcc
    28981 attttttagg gctatgattt catcagaata aatcgaagca aaattgatat catgaagtac
    29041 aacggctatg cttttattaa agtcttttac taaatttttc ataagttgca tgatttgtac
    29101 gctatgtttc atatcaagat tattaagagg ttcatcaaac atgataaatt cagtatcttg
    29161 agcgataatc attgctataa aagctctttg tttttgtccc ccacttaagc tgtctaaaaa
    29221 ttcatttctt agagtgttaa gtcccatata ctcaagtgct tcatcgattt tcattttatc
    29281 gtttaaatta attcttcctt gagagtgtgg aaagcgtcca aatgcgacca attcttcaac
    29341 ttttaatctt aaattaatat gattttgctg tttaagaatg gaaatttttt gcgcaagatc
    29401 ttgttctttg tatagtgcta aattcatgcc atcgatatag attcgcccac tatcgggttt
    29461 gattaaacga cttgcaagag ctaaaagagt agattttcct gctccatttg cccctataat
    29521 ggaagtaatt tttcctttat gaaaatcgat actaagatct gaaatgatag ccttttgatc
    29581 gtagcatttg gtgatatttt gtaatcttat catagtttat tgccttttaa tacaagatag
    29641 ataaaatata ttccacctaa aaaattgata ataacgctta tggttgtatt gtaatcaaaa
    29701 attctagaga caaaaaatac tcccccaagt aaagctaaaa tgctaatgag tatgcaagca
    29761 agtagtaaaa tgctatgctt tgcagtttta aaaagttcgt aagtgatatt tactactaaa
    29821 agtcctagga aggtgatagg acccacaagt gctgtgctaa tagaagttaa aatagcaatt
    29881 attatcataa gatgttttga aattttttga tagtttatcc ctaaatttat ggataaatcc
    29941 ttgcccaaac ttaaagggtc taaaaatttc atatagcgaa aaatccaaat aaaactaagc
    30001 aaagttacga tataagcaag ggctaaaaca tcaaaagcta cattatcaaa acttgcaaac
    30061 attcttcctt gaataatcat aaattcatca ggatcaataa gaatttcaaa aaaagagctt
    30121 agtgtgctaa aaagtgttcc aaaaatcaaa cctaaaagca tgataagata aatactttta
    30181 tcactgctaa aaagaatttt ataaagtcct aaagaaaata caaccataca agctagagtg
    30241 attaaaaaat taatatcatt tctatataca ctcaaatttg cagaacctaa agaaaagata
    30301 agggtgcttt gaagaagcat atataaagaa tccaagccta tgatggcagg ggttaaaatt
    30361 ttgttattgc aaagagtttg aaaaatcaca gttgatatag ctatacaaat agccactata
    30421 acaatagctg cgatttgcaa aaagcgattt tttaatgcgt attcatcaaa atcttttaaa
    30481 cctgcaaata caaaaacaag tgccattata agggttaaaa aagctaagat taagattttt
    30541 ttacgcataa gttttccttt tgagtaaaag aaaaataaag atcaaagagc ccaaaacacc
    30601 tgtggttata ctcaaaggca tttcaaaagg aaaaatcaca agccttgaga taatatcgca
    30661 aataagtaaa aacaaagccc cgcataatgc tatatagata agatttttct taagattatc
    30721 cccgcgataa atggcaacaa gattagggat gataagacct aaaaaaggta taactccaat
    30781 gcttacaatc actacgctag tgataataga aactattatt aagcctaaaa ataagattgt
    30841 attataagaa actccaagat ttaaagcaag atcttctccc atacctgcta tagtgatttt
    30901 atgggctaga aaataagcaa gtataaaaag cggtaaagaa atataaagca attcataatt
    30961 tccctgcata acatttgcca tactgccctg tagccagcct tggatatttt gtatataatt
    31021 taaagcataa gcaaaaaaag tggttatagc atttataatc ccaccaaaca ttaatcctat
    31081 caaaggcaca aaaatcacat ctttaagttt aatttttctt agaatttgga taaatataaa
    31141 agaacccaaa agtgcaaata cagaagcaat gatagtttga gtaaaaaaag aagctcctgt
    31201 aaaaaatatt aaagaaatca aaatgccaaa tttagcacaa tccatagtcc ctgcagtggt
    31261 tggagaaaca aatttatttt gcgtgagttg ttgcatgatg agtccgcata tactaagact
    31321 catacctgta agtaaaattg caataagcct tggaattctt gtaagtaaaa tgatttcgag
    31381 ctgggtagtg ctgagtgaaa aaatatcgtc taaattgata cgaataaccc ctataaataa
    31441 gcttattatt ccaaaaacaa caagtaaaat taaaagaata tttaaactaa acaagtgttt
    31501 a
//
LOCUS       DBBXRO010000004        30585 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.004, whole genome shotgun sequence.
ACCESSION   DBBXRO010000004 DBBXRO010000000
VERSION     DBBXRO010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30585
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.004"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            99..1928
                     /gene="htpG"
                     /locus_tag="ACJFEZ_000099"
     CDS             99..1928
                     /gene="htpG"
                     /locus_tag="ACJFEZ_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HGG0916253.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELVSNSSDALDKLNFLS
                     VSDDKYKSLKFEPRIDIKIDKDKKTLTISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWISDANGYEIEDATK
                     EEQGTSITLYLKDDEFANSYKIESIIEKYSNHIQFPIFMEKEEFIPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKTEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLYRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILSELEKLKNKDKEKYLSFFKNFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGESLRSLEEYKNDIQGEQKEIFYITGNNESLLRNSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLGEYEGLKFIAINQVEDKNELSDEEKNEFAPLVAKFKELLKDQV
                     EDVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKN
                     NETFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIITKAFS"
     gene            1925..2245
                     /locus_tag="ACJFEZ_000100"
     CDS             1925..2245
                     /locus_tag="ACJFEZ_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HGG0916254.1"
                     /translation="MITNLPASVWMKQDLSEYQIFDVRTPAEWEEGVLPHAECVALYD
                     NHGLLNANFLEEFQARRNENKKLAFICRGGHRSMMAANFIKNELGLESVNLDGGMLAL
                     KGLI"
     gene            2242..2676
                     /locus_tag="ACJFEZ_000101"
     CDS             2242..2676
                     /locus_tag="ACJFEZ_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916255.1"
                     /translation="MIGLYLLIAALSFLLLYFALKKLTLNIDEKALLEPIKSDIYPKF
                     CDIIDERIREFKDGVQNNSFTLKDQDKKDELLEKLGDLNRELTFIQTMNLSNKSDSVW
                     QSELFDFLKELEKLLLEYLENGEEEAENLRENLMNEFEKLRG"
     gene            2651..4459
                     /locus_tag="ACJFEZ_000102"
     CDS             2651..4459
                     /locus_tag="ACJFEZ_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005436 - sodium:phosphate symporter
                     activity [Evidence IEA];
                     GO_process: GO:0035435 - phosphate ion transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0044341 - sodium-dependent phosphate
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HGG0916256.1"
                     /translation="MNLKSLEAKVQERKNFLKYLKMTFWGIFTLVLIFALIRFSELAN
                     LLAGVAILLIGMTNLSLGFKSFSGGLLEKILTHSTNTKLKSILFGAISTLIMQSSTLV
                     SIISLSFLSAGLISLVAGVGIIFGANLGNTASSWLIVWLTRVNISILAIPLLVIGVLF
                     FFQKDNMIKSFGNIFIGIGFFFLGVDYIKNGFNEFQDAIDLSYFDFTGFKGVLIFVGL
                     GALLTGIIQSSTATIAIIVAALLTGQISFENSLAATLGTSVGGVVTAVLASLSTNVEG
                     KKLAFANCIFNFTIAIIIILIFPYFIDFLNGMAKILNIENLALKMALFHTLFNLLGIF
                     IFVLFIPQLVNFLNKIVKAPKDKNKDRPLYLEPSLLKFSDTAIEALQKESEHLYDNAY
                     AIIAHAIGLSRKDIQSNKSFEEILQNKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKA
                     QIHIDDELKNHRIFTFKIAAKNLTEATKNLKLVQENIKKYSNCGNKDLALEYNKIRSN
                     LGELLRSIQELRSVDDEKVYLIIKNLQKGKEILKEIDGLTLNNVEHLILVRKITTAEG
                     ISIINDTSFIAKIAKDLIDAVEIIFAREKVLWDDIN"
     gene            complement(4452..6257)
                     /locus_tag="ACJFEZ_000103"
     CDS             complement(4452..6257)
                     /locus_tag="ACJFEZ_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HGG0916257.1"
                     /translation="MQEHKKNRVSKVAFAYCMALFFMIIFLSSTFFLTSKRHIPNTEK
                     DQYSLALRGNIITKDNFTITSSRQIYRAEIDLRSINKDKFDLFLKLFQIYSGISDDEI
                     ADIKKRIQKQKKRSYHFILSQNLDSKQASYLRDLAKKLYIQGFFKAFTNNLGKVETRG
                     LSIIEHEEDRIYMSKDALTPAIGYTKMVLDPQSGILKNVGVKGLEKYYDDCLSPLQNE
                     KIQGLKDIGGNIILNLNSLQQKKIDGCLLYLNISLKLQKSIEKAIDGRNEDLKANEII
                     VGVMDSKTGQILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKLKTDEVINTYGGAYKLGRFTIRDDHKMDQMTMEEVIRYSSNIGMIQIAKRLSNLEI
                     IAGLKIFKFGEKSGIDLPYEQKGEIPNSKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNNGVYITPHLAEKFYQDGRFVSLEEDIKKEVILTPQAAQTMQKILIDVIEKGTGKK
                     AITQGIIVGGKTGTARIAERQGYTSNRYNASFFGFANDTKHNYTIGVLVRNPTKPYSY
                     YAAQSALPMFKDVVDILINEDFLTPIITENNQTLN"
     gene            complement(6263..6562)
                     /gene="fliE"
                     /locus_tag="ACJFEZ_000104"
     CDS             complement(6263..6562)
                     /gene="fliE"
                     /locus_tag="ACJFEZ_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HGG0916258.1"
                     /translation="MNNINDLRLNNNISNANKSQNSNDKIGDEFAKMLKNEIEDLDKT
                     QKTAEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            complement(6569..7063)
                     /gene="flgC"
                     /locus_tag="ACJFEZ_000105"
     CDS             complement(6569..7063)
                     /gene="flgC"
                     /locus_tag="ACJFEZ_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HGG0916259.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAQGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            complement(7073..7504)
                     /gene="flgB"
                     /locus_tag="ACJFEZ_000106"
     CDS             complement(7073..7504)
                     /gene="flgB"
                     /locus_tag="ACJFEZ_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HGG0916260.1"
                     /translation="MINPFKSKELITSALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAITEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            complement(7580..8581)
                     /gene="mltG"
                     /locus_tag="ACJFEZ_000107"
     CDS             complement(7580..8581)
                     /gene="mltG"
                     /locus_tag="ACJFEZ_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HGG0916261.1"
                     /translation="MRIPFLRTKNTTEINTIKTSDAYTIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFLPQGSIAQIITHLKQNKYEMSTIDKYILFFLGHPQSGWINIGTKELN
                     RIEFLHKLTIAKAALETLTLIPGETSVIFLEQAAKQLELDKNTLLAEFEKQATYKEGV
                     FLPETYKIPKGITEALLVQVLLKHAENSNRKTSEKIFGEYNAKKWHQYIITASVIQKE
                     AANESEMPIVASVIYNRIKKGMKLQMDGTLNYGFYSHTKITPQRIREDNSSYNTYKFE
                     GLPKEAVCNVSLSAIRAAIFPAKTDYLYFVRDKTTGAHIFSTNLNDHNKAIQSQKNK"
     gene            8496..11066
                     /locus_tag="ACJFEZ_000108"
     CDS             8496..11066
                     /locus_tag="ACJFEZ_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HGG0916262.1"
                     /translation="MKKKIVYASLVLIVFISVVFLVLKNGILISHIQFSFLNLEQLYI
                     KLDKKLIVRAKNITFNEDNNASIQDDKNVNSDFASKELLNITKNLKYLYTFVEEIDIQ
                     NFNIKDNHMRILFKNDEFFVDNDLLFLKLALHREGKEINADIKNLLLKDYNLSIDGNL
                     SINAKSEFYNFKGQANSDLADFKINISYKNQNLAYKFEDINIRDITTIFNQAKKRIAL
                     PEPLVLWVAHRAKGDFYHFDFIQGFIDFSKNNYYFDDISAWGYANNVKVRLDNQMNAI
                     NFPKLDLNLSNQKLNFTFNKASYNESDLSESKVFLYDLFDNKKHGIYLRIKSKNLKFD
                     EKLAKALKNYDLNLPFYQKNGKLGSDLELIIDFNEKGDVKYNGTLSLENAELSLANFS
                     VARAFVKLNQNDLSIENASIKNEFLEADFNAKIDLATHKGIFDTQISRLYFDNGELFD
                     MRNQKTKINLDYTDDLQLSVPEWDLTLNFKEGLEAYANNPNILIPHSPLLKKFGFMGA
                     KSIYYKSVDFNDFNAQIQDAHFKNNLLVNNKPYENDSFGIVRKSGVLNINTQSGLANV
                     KVIDNNKTIHLKNLTYIYQKDENASTSSFDIAKNTQNIILNGENLTLILADFNKTLNF
                     DKMEANLKSDILDARATRKNANFDLYYSPNDLKLFIKNINDEHLNEFLQKRAVQEGVF
                     NFSVIGSGLDYFEGEFNFKDTFIRDLKGVNQLISFIDTVPSLLMFKTPTFNEKGLSLH
                     DGKVVFNRKKDLLSFEAINLNGNSMDLYGLGSANLRLNTIDIDLELKTLKSASETISK
                     VPILNYVILGKNQEISANIKVDGALDDPKFHTQILSDTLKTPFNLIKNIIQLPSNLFN
                     "
     gene            11183..13387
                     /locus_tag="ACJFEZ_000109"
     CDS             11183..13387
                     /locus_tag="ACJFEZ_000109"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HGG0916263.1"
                     /translation="MQVTYTLTDESPALATYSFLPIVKAFLSKAHIGVKTSDISLSGR
                     ILATFSEYLKEDQRCEDALELLGELVKKSDANLIKTPNISASIPQLKAAIKELQEKGY
                     MLPNYPDEPKNDEEFQIKAKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDEDCVASIEFVADSGKSEILKEGLKLEKNEI
                     LDATFMDVEKLQDFYAKEIKASKDNDLLFSLHLKATMMKVSDPILFGYAVKIFFKELF
                     DEFKDEFETLGINPNNGLSELLSKVQTSSKKDEILRRYNEILNSRADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPAKLGSVSNVGLMAKKAQEYGSHDKTFVAKEDGVFKIIAKGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERADLTGAEAIFWLDSKRASNKIMIDLVQNRLKEKNKNIA
                     ILAPYEACLKSLELIRAGKDAISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCNNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQANDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAIIEKIGQR"
     gene            13384..14292
                     /locus_tag="ACJFEZ_000110"
     CDS             13384..14292
                     /locus_tag="ACJFEZ_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HGG0916264.1"
                     /translation="MKITIIGAGNVGSSVAYALILRELANEIVLVDINEDLLIARELE
                     LSQSIAALNLDIELTCTKDYAYTKNSDIVLFSAGFARKDGQSREELLQLNTNIMLDCA
                     KKIKEFNPDPLFIILTNPVDFLLNTLYESGIFSSKKIVAMAGVLDNARFKYEVAKKLK
                     ARISSVDTRLIGFHNDDMVLVKSYASVKNQKLGELLSEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACVRMLESIRSGEFLPMSVILHGEFGVQNKALGTMARLGLEGVVEIM
                     KLELSDEEKDKIKKSLIKYQYIKEDK"
     gene            14289..15452
                     /gene="sucC"
                     /locus_tag="ACJFEZ_000111"
     CDS             14289..15452
                     /gene="sucC"
                     /locus_tag="ACJFEZ_000111"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HGG0916265.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVEEAVENAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKAYASQILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDESKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASAETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKAILDSSNLKNIKAATNLKNGAELVKSLVG"
     gene            15462..16331
                     /gene="sucD"
                     /locus_tag="ACJFEZ_000112"
     CDS             15462..16331
                     /gene="sucD"
                     /locus_tag="ACJFEZ_000112"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HGG0916266.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATGADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFEKDNETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            16346..16657
                     /locus_tag="ACJFEZ_000113"
     CDS             16346..16657
                     /locus_tag="ACJFEZ_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HGG0916267.1"
                     /translation="MSIAAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTPEAKDRAVAVKNNKYKKL
                     A"
     gene            16666..17790
                     /locus_tag="ACJFEZ_000114"
     CDS             16666..17790
                     /locus_tag="ACJFEZ_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HGG0916268.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGVSVTIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASVAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIEIINRKKFTGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGAIVKKNMERLIGKIKNNQDDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAINRLREEGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVSSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            17792..18637
                     /locus_tag="ACJFEZ_000115"
     CDS             17792..18637
                     /locus_tag="ACJFEZ_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HGG0916269.1"
                     /translation="MAFNYDEYLRTDKLPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKSKFESMDFEERKDKFPTGVLYEDSTQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            18634..19191
                     /locus_tag="ACJFEZ_000116"
     CDS             18634..19191
                     /locus_tag="ACJFEZ_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HGG0916270.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDILKETMLHMVP
                     AKTRDANSKAFDLGVKYAQETKAHS"
     gene            19320..19583
                     /locus_tag="ACJFEZ_000117"
     CDS             19320..19583
                     /locus_tag="ACJFEZ_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HGG0916271.1"
                     /translation="MDIFDEMFNKTPKEKFIEIIQNGNLGALEKVFENFFADHIAMIE
                     LLEKQGFNEMDMKSFILENGDFIQERQNDLFIELGAKILGHEG"
     gene            19583..20113
                     /locus_tag="ACJFEZ_000118"
     CDS             19583..20113
                     /locus_tag="ACJFEZ_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HGG0916272.1"
                     /translation="MSIRLLVFFTLMANCIVLNAAPVFDYTYKFTLKKDERASVEIKE
                     LGYDNGVQNFDFYWTLFDNTNIVVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYKNPH
                     IDRARLILEFSEYKKGEAIFTVYIEDKDSRLEVKFLDPRKMQLTNPPQNNQVVPMIDF
                     NEPQVEPLIQRENTTN"
     gene            20130..21023
                     /locus_tag="ACJFEZ_000119"
     CDS             20130..21023
                     /locus_tag="ACJFEZ_000119"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HGG0916273.1"
                     /translation="MQPIDDLIKQYLQELDYEPILTMLANTKSGKKLRSKLLLAIAGE
                     NANSYKICAAIELIHLASLLHDDIIDESKLRRGAKSVNAEFGTKNALMLGDILYSKAF
                     YELSQLDACFASIISDAVVKLAVGELMDVELSKSFNADKDKYLKMIYNKTAVLIEASA
                     RCGAILANLDEKAFGEYGKNLGLAFQMIDDILDIKGDEKTLGKPAMNDFKEGKTTLPY
                     IYLYENLNNEDRAQLKNLFQKDLNNDEKIWIQTKFEETKALNKAILEAKEYAHQAALA
                     IKDFSNEKLQDIIQAMIDRDF"
     gene            21023..22318
                     /gene="hemA"
                     /locus_tag="ACJFEZ_000120"
     CDS             21023..22318
                     /gene="hemA"
                     /locus_tag="ACJFEZ_000120"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HGG0916274.1"
                     /translation="MYYCISFTHKNTDLSLRERLSFSDEAKKNEFLRLLSIHENIEEC
                     LVISTCNRVEIVAYVKEACAEYIIKSLALLCNVDKESLVQKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIVGQLKDAFAFALKNNFCAVHLSRAIHSAFKCAAKVRNETQISKNP
                     ISVASVAVAKAKELLPLDGKSAIVIGAGEMGELAAKYLITAGARVIVLNRDMEKARIL
                     CERLGVLSECDSLNNLKKYLDEYELFFSATNAPNAIITNSLIDEVSHKRYFFDIAVPR
                     DIDISENEKISVFAVDDLEVVVRKNLALREQEARMAYGIIGRETAEFFRYLNDLALTP
                     IIKAIRLQAKECANKQLQIALDKGYLKHSDEEEARKLIHQVFKAFLHTPTMNLKHLQG
                     KMQSDTVINAMRYIFDLENNLEGLNQYTCEFNMENNDEI"
     gene            22305..24014
                     /locus_tag="ACJFEZ_000121"
     CDS             22305..24014
                     /locus_tag="ACJFEZ_000121"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HGG0916275.1"
                     /translation="MMKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIRTIVKEEMDKAGAQEVNLSFVTPATLWQESGRYNVFGKELLRFKDRKE
                     NDFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLTREFDLMYNTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAVRANKTCDEERPEANYASKFHTPDIKTIEALAQFFKINA
                     FYTIKAVVKKAIYENENKLVVFFIRGCDDLQETKAQNACNALELVDASEEELEKAGLV
                     AGFIGFVGLKNVDFYLDKELEGEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLAEVKE
                     NDCCAKCGGKLKLSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEASHDEKGCIWNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKDELEFIDRKTLEKKIISSKEVFDFIKK
                     SVE"
     gene            24011..24397
                     /locus_tag="ACJFEZ_000122"
     CDS             24011..24397
                     /locus_tag="ACJFEZ_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integral memnbrane protein"
                     /protein_id="HGG0916276.1"
                     /translation="MNYKLSLSPLFLLELVASILFIVFFGLGNFLIFILASMIFGVIL
                     LGIFWKNMLEFRISGFKDMLTQFAFVMAAFLFIFPGIVTSIFGFFVLCFGLIFNFAKP
                     RYKRNYRQNNTSDEEIIDVEIIEERK"
     gene            24394..25320
                     /gene="hemC"
                     /locus_tag="ACJFEZ_000123"
     CDS             24394..25320
                     /gene="hemC"
                     /locus_tag="ACJFEZ_000123"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HGG0916277.1"
                     /translation="MKELVIATRKSQLALWQSEFIADFLNKTHGIAVRLEGFKTKGDV
                     LLDSPLAKIGGKGLFTKELEESMLRNEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSN
                     DAMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIISLRGNVNSRIEKLKNGD
                     FDAIILAMAGIKRLDLDKQVNFVYTFSKDELIPAASQGALGIESIDDEKFLKFLKCLN
                     DDNALIETTIEREFISTLEGGCQVPIGINAELLGDEICVRAILGLPDGSEILKEKRMI
                     KKSDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            25317..27119
                     /locus_tag="ACJFEZ_000124"
     CDS             25317..27119
                     /locus_tag="ACJFEZ_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HGG0916278.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KIDFFMNLLSLKNVPPKRLKADKALYDYELLNSLEELPILKTWEEDAGRFITMGQVYT
                     QNLDKTQNNLGMYRLQVSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGEP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFVPYDSDVVIEGYVDLEEFKV
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            27276..27641
                     /locus_tag="ACJFEZ_000125"
     CDS             27276..27641
                     /locus_tag="ACJFEZ_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlaG family protein"
                     /protein_id="HGG0916279.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASSNIQTDRSQSQGGDDGQ
                     QQGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            27644..29560
                     /gene="fliD"
                     /locus_tag="ACJFEZ_000126"
     CDS             27644..29560
                     /gene="fliD"
                     /locus_tag="ACJFEZ_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009421 - bacterial-type flagellum
                     filament cap [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HGG0916280.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFINANLTGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKSTPYRLTLTSKETGEDSAISFYAGKKDSNGQYQSDSEA
                     EKIFSNLGWELDTTTQTIDPAKDKKGYGIKDTSLHIQTAQNAEFTLDGIKMFRSSNTV
                     TDLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGT
                     KGTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAG
                     TLSFNSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGLEFKP
                     GDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVESYNQ
                     NNVTGFRLNFSGDGSSDFSIKGNASILKELGLSDVNITSKPIEGKGIFSKLKATLQEM
                     TGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLNQQLN
                     TVTNMINAANNSNN"
     gene            29572..29958
                     /gene="fliS"
                     /locus_tag="ACJFEZ_000127"
     CDS             29572..29958
                     /gene="fliS"
                     /locus_tag="ACJFEZ_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HGG0916281.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            29939..30214
                     /locus_tag="ACJFEZ_000128"
     CDS             29939..30214
                     /locus_tag="ACJFEZ_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916282.1"
                     /translation="MKQWLSDFKLALIQEDINKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(30212..30536)
                     /gene="rnpB"
                     /locus_tag="ACJFEZ_000129"
     ncRNA           complement(30212..30536)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACJFEZ_000129"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
BASE COUNT        10728 a         3963 c         5768 g        10126 t
ORIGIN      
        1 ggcttggttt tataattttt aagtaagctc ttgaaattta tcttagaatt tgtatttttt
       61 gctaaaatat ctgtttcaaa atttataaag gagaaaaaat gcagtttcaa actgaagtaa
      121 atcaactttt acaattgatg attcattcct tatactcaaa caaggaaata tttttaagag
      181 aacttgtatc aaattcaagt gatgctttag ataaacttaa ttttttaagc gtgagtgatg
      241 ataaatataa aagtttaaaa tttgaaccta gaatagatat taaaatcgat aaagataaga
      301 aaacccttac tattagcgat aatggtatag gtatggataa agatgatctt attaacaatc
      361 ttggaaccat agcaaaaagt ggtacaaaaa gttttttaga gaatttaagt ggtgatgcaa
      421 aaaaagattc tcaacttata ggacaatttg gtgtaggttt ttattctgca tttatggtgg
      481 ctagtaaaat cgaagtttta agcaaaaaag ctttagatga taaagcttat ctttggattt
      541 ctgatgcaaa tggctatgag attgaagatg cgactaaaga agagcaaggg acaagtatta
      601 ctttatattt aaaagatgat gaatttgcaa attcttataa aatcgaaagt attatagaaa
      661 aatattcaaa tcatattcaa tttccaattt ttatggaaaa agaggaattt atccctgcta
      721 aagagggcga ggaagaagga aaaaccgagc ttaaaatttc tcaaattaat aaagctaatg
      781 ccttgtggag aatgcaaaaa tcaagcctta agacagagga ttatgaaaga ttttatgagc
      841 aaaattttca cgattctaac aagcctttgc tttatcttca tactaagagt gagggaaaat
      901 tagaatacaa ttctttattt tttattccgc aaaatgcacc ttttgatctt tatcgtgtgg
      961 attatcaaag cggattaaaa ctttatgtaa aacgcgtatt tatcagcgat gatgataagg
     1021 agcttttacc gacttatttg cgttttgtgc gcgggattat tgatgtagag gatttaccac
     1081 ttaatgtaag ccgtgaaatt ttacaagaaa atcaaatttt aaaaggcgta aaagaagcca
     1141 gcgttaaaaa aatacttagc gagcttgaaa aacttaaaaa taaagataaa gaaaaatatt
     1201 taagcttttt taagaatttt ggtaaagtgt taaaagaggg actttatggt tttggtggcg
     1261 aaaaagacag tcttttaaaa ctcatgcttt ataaaagcac taagggtgaa agtttgcgct
     1321 ctttagaaga atataaaaat gatatacaag gcgagcaaaa agaaattttc tatatcactg
     1381 gaaacaatga aagcttgctt agaaattcac ctttacttga agaatataag caaaaaaata
     1441 tagaagtatt acttatggat gatgagattg attctttggt tactcctatg cttggagaat
     1501 atgaaggctt gaaatttata gccattaatc aagttgaaga taaaaatgaa ttaagcgatg
     1561 aggaaaaaaa tgaatttgct ccattggtgg ctaaatttaa agagctttta aaggatcaag
     1621 ttgaagatgt gagacttaca agtcgtttaa aagatagtcc aagttgtatt gtttatgata
     1681 aaaataagcc tgattttgca atgcagcagc ttttaaaaca aatgggacaa gaacaaaact
     1741 ttaaacctat tttagaaatc aatccaaaac acgccatttt tacaggtctt aaaaataatg
     1801 aaacttttag tgctgatata gcaaccttag ttttaaatat ggcaaaactt agcgaaggta
     1861 tgggtgtgga taatccggct gaatttaatg caagccttac aaaaatcatc actaaggctt
     1921 tctcatgatt acaaatctcc cagcaagtgt ttggatgaag caggatttaa gcgaatatca
     1981 aatttttgat gttcgcactc cagctgaatg ggaggagggt gttttacctc atgctgaatg
     2041 tgtagctttg tatgataatc atgggctttt aaatgctaat tttttagaag aatttcaagc
     2101 gagaagaaat gaaaataaaa aacttgcttt tatttgtcgt ggaggtcata gaagtatgat
     2161 ggctgcaaat tttattaaaa atgaactcgg tttagaaagt gtaaatttag atggtgggat
     2221 gttggcatta aaaggcttga tatgatagga ctttatttgt tgatagcagc gttatctttt
     2281 ttactccttt attttgcact taaaaaactt actttaaata tagatgaaaa ggccttgctt
     2341 gagcctataa aatcagatat ttatcccaaa ttttgtgata ttatcgatga aagaattaga
     2401 gaatttaagg atggggttca aaataatagt tttaccttaa aagatcaaga taaaaaagat
     2461 gaattattgg aaaaattagg ggatttaaac agagagctta ccttcataca aacaatgaat
     2521 ttaagcaata aaagcgatag tgtatggcaa agtgagcttt ttgatttttt aaaagagctt
     2581 gaaaaattat tacttgaata tttggaaaat ggcgaagaag aggctgaaaa tttaagagaa
     2641 aatttgatga atgaatttga aaagcttaga ggctaaggtg caagaacgca aaaacttttt
     2701 aaaatatctc aagatgactt tttggggtat ttttactttg gttttaatct ttgctttaat
     2761 tcgatttagt gaattggcta atttattggc tggagttgca attttactta taggaatgac
     2821 caatttaagc ctaggattta aatcttttag tggcggcttg cttgaaaaaa ttcttactca
     2881 ctcgacaaat acaaaactta aaagcatact ttttggtgct attagcactc ttatcatgca
     2941 atcttcaact ttagtttcga ttatctctct ttcttttttg agcgcaggac taatatcttt
     3001 agttgctggt gtgggtatta tttttggtgc aaatttggga aatactgcaa gttcatggtt
     3061 gattgtttgg cttacaagag ttaatatttc tatcttggct atacctttgc tcgtaattgg
     3121 agttttgttt ttctttcaaa aagataatat gattaaaagt tttggaaata tttttatagg
     3181 tataggtttt ttcttcttag gagtggatta tataaaaaat ggttttaatg aatttcaaga
     3241 tgctatagat ttgtcttatt ttgattttac aggttttaag ggagtgttga tttttgtagg
     3301 tcttggggct ttgcttacag gtattattca atcaagcaca gcaacaatag ccattatagt
     3361 cgcagcacta ttgacagggc aaatcagttt tgaaaattct ttagcagcga ctttgggtac
     3421 gagtgtagga ggtgtggtaa cagctgtgct agcttcttta agtactaatg ttgagggcaa
     3481 aaagcttgct tttgcaaatt gtatttttaa ttttactatt gcaattataa tcatacttat
     3541 ttttccttat tttattgatt ttttaaatgg gatggcaaaa attttaaata tagaaaattt
     3601 agctttaaaa atggccttat ttcatacttt gtttaatctt ttaggaatat ttatctttgt
     3661 attgtttatc ccacaattgg taaatttttt aaacaaaatc gttaaagcac ctaaagataa
     3721 aaataaagat cgacccttat atcttgaacc tagtttattg aaatttagtg atacagctat
     3781 cgaagctttg caaaaagaaa gcgaacatct ttatgataat gcgtatgcga ttatcgctca
     3841 tgctataggg ttgagtcgta aagatataca aagcaataaa agctttgaag aaattttgca
     3901 aaataaaaaa tggtttagta aaaatgtgga tttggattat ttgtatcaaa ctagaatcaa
     3961 agtgcttttt gaagctatca ttgacttttc aaccaaagcg caaattcaca tagatgatga
     4021 acttaaaaat cacagaattt ttacttttaa aatcgctgct aaaaatctta cagaggcaac
     4081 taaaaattta aaattagttc aagaaaatat caaaaaatac tctaattgcg gtaataaaga
     4141 tttggcctta gaatacaata aaataagatc taatttagga gaattgctaa gaagtattca
     4201 agagcttaga agcgtggacg atgaaaaagt gtatttgatt attaaaaatc ttcaaaaagg
     4261 taaggaaatt ctaaaagaaa ttgatggttt aactcttaat aatgtcgaac atcttatttt
     4321 agttagaaaa atcactaccg cagagggtat atctataatt aatgatacaa gttttattgc
     4381 taagattgct aaagatctta tagatgccgt tgaaatcatt ttcgcaagag aaaaggtgct
     4441 ttgggatgat attaattaag agtttgatta ttttctgtga tgataggggt tagaaaatct
     4501 tcattgatta aaatatctac aacatcttta aacataggca aagcactttg agcagcatag
     4561 taactataag gcttggtagg gtttcttact aaaaccccta tggtatagtt atgttttgta
     4621 tcgttggcaa aaccgaaaaa agaagcatta tagcgattgg aggtatagcc ttgtctttct
     4681 gcaatacgcg cagttcctgt tttaccccct acgattatac cttgagtgat agcttttttt
     4741 cctgtacctt tttctataac atcaataaga attttttgca tggtttgcgc tgcttgcggg
     4801 gttaaaataa cttctttttt gatatcctct tcaagactta caaagcgtcc atcttgatag
     4861 aatttttcag ccaaatgcgg agtgatgtaa actccattgt tattaaaaac attataagca
     4921 gcaagtagtt gtataaaggt tgtttttaag ccatatccat agcttaatac cgacttttct
     4981 atatctctta agcgcttgga attagggatt tctccttttt gctcgtaagg caagtcaatt
     5041 ccgctttttt cgccaaattt aaaaatttta agtccagcaa tgatttcaag attactcaat
     5101 cttttcgcaa tttgtatcat acctatatta gaagaatatc taatcacctc ttccatagtc
     5161 atttgatcca ttttatgatc atctctaata gtgaaacgcc ccagtttata agctccacca
     5221 taggtgttaa ttacttcatc tgtcttgagt ttgccaagtc ttagagcagt tgtaaaaata
     5281 aaaggcttga taaccgatcc tgcttcatat ccatactcta tagcgcttgc atttaaaaca
     5341 gataaatctt taccgcgatt ttggggatca taacgcctag aacttgccag agctagaatt
     5401 tgacctgttt tactatccat aactccgact atgatttcat tagcttttaa atcttcattt
     5461 cttccatcaa tcgctttttc aatgcttttt tgaagtttta aggatatatt aagatataaa
     5521 agacagccat caatcttttt ttgctgcaat gagtttaaat ttaagattat atttccacct
     5581 atatctttta ggccttgaat tttttcattt tggagtggac ttaagcagtc gtcatagtat
     5641 ttttcaagtc cttttactcc aacatttttt aaaattccgc tttgaggatc taaaaccatt
     5701 ttagtataac ctatggctgg agttaaagca tctttagaca tataaattct atcttcttca
     5761 tgttcgataa tgcttaaacc tcttgtttca acctttccta ggttattggt aaatgcttta
     5821 aaaaatcctt gtatataaag cttttttgca agatctctaa gatagcttgc ttgtttagaa
     5881 tctaaatttt gagaaaggat aaaatgatag gatcgttttt tctgtttttg aattcttttt
     5941 ttaatatctg caatttcatc atcgctaatt ccactatata tttgaaaaag ctttaaaaat
     6001 aaatcaaatt tatccttatt gatacttctt aaatcaattt ctgcgcgata aatttgcctt
     6061 gagcttgtga tagtaaaatt atctttagtg atgatatttc cgcgtaaggc aagagagtat
     6121 tgatcttttt cagtgttggg gatatggcgc tttgaagtga gaaaaaaggt agagctaaga
     6181 aaaatgatca taaaaaaaag cgccatgcag taagcaaagg cgacttttga aacacgattt
     6241 ttcttatgct cttgcataca gcttaaattt gtgttcttgt gatttcttta taagcgctga
     6301 tagctttatt tcgaacctct agcataaatt tcatactgct ttcagctttt gtgatagcaa
     6361 tagctgcttg gtgtaaatct tttacctgtc ctgttgcaat atctgtcatc gcagcttctg
     6421 cagttttttg agttttatct aaatcttcga tttcgttttt aagcatttta gcaaattcat
     6481 cgccgatttt atcattagaa ttttggcttt tgtttgcatt tgaaatgtta ttatttaatc
     6541 ttaaatcatt aatattattc atattttatt atcctcttaa taaatcaatc gcactttgag
     6601 ctatggtttt tgcacttgta aaagcactaa cattagcttg ataagctctt gttgcttcaa
     6661 tcaaatctgc catttcgatg acaggattta catttggata tgctacatag ccttgcgcat
     6721 tagcatcagg atgagaagga tcatatttca tacgaaaatc tttatcatct cttacgactt
     6781 tatctacaac aacgctttgt atagcaggct ttgcctcttc aggtgagctt ggatcattta
     6841 aaggattttc atattttaaa aagttattgt ccttattaat ttgctcgttt aaaagcttat
     6901 caaaatctgt cgctttaaag atcacttcgc gtcttcgata aggtccgcct tcagctgttc
     6961 ttgttgtgtt tgcattagct atattggagc taataacatt cattctaaag cgttgcgcac
     7021 ttaaaccata tccgctaata tcaaaatcac ttaagtatgc cataatttac ctttaactta
     7081 atttagaact tgcatcaagt atagagctaa aaatattact ttgtcttctt aagaccccat
     7141 caagagctgt aatcatcact gtatttttac tcatttcagt tgtctcaaca tctaaatcca
     7201 cagtatttgc atcatttctt gctaaatgtc catcccttag ataaatagta gatttgctag
     7261 gatctgggaa tttccaaggt ttttgatgtc cttcttcagt tattgctaat tgtaattctt
     7321 tattatcatt ttttttaaag atttcatttg cacgatttac taaagcagtt tcaaattcaa
     7381 tatctcttgc tttataaaaa ggagtgtcaa catttgcaag gtttgcattg ataagttgat
     7441 ttcttaaatt tctacccgct aaagcacttg tgataagttc ttttgatttg aatgggttaa
     7501 tcatttttta tcctttttat aatttcaaaa attaacaagc aaatactgtt ccaacttgca
     7561 taaatttttg caattttagt tatttgtttt tttgtgattg aatggcttta ttatgatcat
     7621 tgagattggt gctaaaaata tgcgcccctg tggttttatc tcttacaaaa tataaataat
     7681 cagtttttgc aggaaagata gcagcacgaa ttgcggataa agagacatta caaactgctt
     7741 ctttaggcaa accttcaaat ttataagtat tataagagct attatcttct cttattcttt
     7801 gaggagtgat ttttgtatga gaataaaatc catagtttaa ggttccatcc atttggagct
     7861 tcataccttt ttttatacgg ttataaataa cgcttgcaac tataggcatt tcgctttcat
     7921 tagccgcttc tttttgaatg actgatgctg ttatgatgta ttggtgccat tttttggcat
     7981 tgtattcgcc aaaaattttc tccgaagttt ttctatttga attttctgca tgtttgagca
     8041 aaacttgaac caaaagtgct tctgtgattc cttttggaat tttgtaagtt tcaggaagaa
     8101 aaaccccttc tttatatgta gcttgttttt caaattcggc taaaagcgtg tttttatcaa
     8161 gttctaattg ttttgcagct tgctctaaaa aaatcacact ggtttctcca gggatgagag
     8221 taagggtttc taatgctgct ttagctatgg tgagtttgtg taaaaattct attctattga
     8281 gttcttttgt gcctatattt atccagcctg attgaggatg acccaagaaa aataagatat
     8341 atttatcaat cgtgctcatt tcatatttat tttgttttag atgtgttata atttgagcaa
     8401 tggaaccttg aggcaaaaaa acaacagaat tgctttttaa aggttgtgtt aaataataaa
     8461 aaattcctaa aataaatatc aaaaagaagt ttctaatgaa aaagaaaatt gtatatgcat
     8521 cacttgtttt aattgtattt atctcagttg tatttttagt tcttaagaat ggtattctca
     8581 tatctcatat ccaatttagt tttttaaatt tggagcaatt atatattaaa ttagataaaa
     8641 aactcattgt gcgagcaaaa aatatcacat ttaatgaaga taacaatgca agtattcagg
     8701 atgataagaa tgtaaattct gactttgctt ctaaggaatt gttaaatatt actaaaaatt
     8761 taaaatatct ttatactttt gttgaggaaa tagacataca aaatttcaat atcaaagata
     8821 atcatatgcg tatattgttt aaaaatgatg aattttttgt agataatgat ttattgtttt
     8881 taaaacttgc gctacacaga gaaggaaagg aaattaatgc tgatattaaa aatcttttgc
     8941 ttaaagatta taatttaagc atagatggaa atttaagtat taatgcaaaa agtgaatttt
     9001 ataattttaa aggccaagca aatagtgatt tggctgattt taagataaat atttcttaca
     9061 aaaatcaaaa cctagcctat aaatttgaag atatcaatat tagagatatt accactatct
     9121 tcaatcaagc aaaaaaaaga atagcattgc ccgaaccttt agttctttgg gttgcgcata
     9181 gggctaaagg agatttttat cattttgatt ttattcaagg ttttattgat ttttctaaaa
     9241 ataattatta ttttgatgat atcagtgctt ggggttatgc aaataatgta aaagttcgtt
     9301 tggataatca aatgaatgct attaattttc caaaacttga tttaaattta agcaatcaaa
     9361 aattaaattt taccttcaat aaggcaagtt ataatgaatc agatttaagt gaaagcaagg
     9421 tgtttttata tgatttattt gataataaaa agcatggaat ttacttgcgt atcaaatcta
     9481 aaaatttaaa atttgatgaa aaacttgcta aggcattaaa aaattatgat ttaaatttac
     9541 ctttttacca aaaaaatgga aaacttggaa gtgatttaga gcttataatc gattttaacg
     9601 aaaagggtga tgtaaaatat aatggcactt tgtctttaga aaatgcggag ctttcattag
     9661 caaattttag cgtggctaga gcttttgtta aattaaatca aaatgatttg agtatagaaa
     9721 atgcaagcat aaaaaatgag tttttggaag cagattttaa tgctaaaatc gatctagcta
     9781 cccataaggg tatttttgat actcaaattt caagattata ttttgacaat ggcgagcttt
     9841 ttgatatgag aaatcaaaaa acaaagataa atttagacta tacagatgat ttacagctta
     9901 gtgtgccaga atgggatttg actttaaatt ttaaagaagg acttgaggca tatgcaaaca
     9961 atcctaatat tttaatccct cattcgcctt tattaaaaaa attcggtttt atgggtgcaa
    10021 aaagtattta ttataaaagt gtagacttta atgattttaa tgcgcaaata caggatgctc
    10081 attttaaaaa taacttattg gttaataaca agccttacga aaatgatagc tttggtattg
    10141 ttcgtaaaag tggtgtttta aacataaata cacaaagtgg tttagctaat gttaaggtta
    10201 ttgataataa taaaaccata catcttaaaa atttaactta tatttaccaa aaagatgaaa
    10261 atgcttctac ttcttcattt gatatagcaa aaaatactca aaatattata cttaatggag
    10321 aaaatctcac tttgatttta gcagatttta acaaaactct aaatttcgat aaaatggagg
    10381 caaatttaaa aagtgatatc ttagatgcta gggctactcg caagaatgca aattttgatc
    10441 tttattatag tcctaatgat ttgaaattat ttattaaaaa tataaacgat gaacatctga
    10501 atgaattttt gcaaaaacgg gctgtgcaag agggtgtctt taattttagc gtgataggta
    10561 gtggcctaga ttattttgag ggggaattta attttaaaga tacctttata agggatctta
    10621 aaggggttaa tcagcttata tcttttatcg atacggttcc aagtcttttg atgtttaaaa
    10681 ctcctacttt taatgaaaaa ggtttaagtt tgcatgatgg aaaagttgtt tttaatcgta
    10741 aaaaggattt gttaagtttt gaagcgatta atttaaatgg caacagtatg gatttgtatg
    10801 gtttaggcag tgcaaattta agattaaata ccatagatat agatttagaa ttaaaaactt
    10861 taaaatcagc ttctgaaact atttcaaagg ttccgatttt aaattatgtt attttgggga
    10921 aaaatcaaga gataagcgcc aatataaaag tcgatggcgc tttagatgat ccaaaatttc
    10981 acactcaaat tttaagcgat actttaaaaa ccccttttaa tttgattaaa aatatcatac
    11041 aacttccttc taatttgttt aattaaaagt gtttaaagtt tgttttaaaa ctaaaacaaa
    11101 ctttaaattt actcttgcat ttttttttaa ttgtaatata ctttagattg aaaaataaaa
    11161 ttagtgttta aaaggacaga aaatgcaagt tacttacact ttgacagatg agtctccagc
    11221 acttgcgacc tattcgtttt tacctatagt aaaagctttt ttaagcaagg cgcatatagg
    11281 agtaaaaact tctgatattt cgctatctgg aagaatttta gctactttta gtgagtatct
    11341 aaaagaagat caaagatgcg aagatgcttt ggagcttttg ggtgagctcg taaaaaaatc
    11401 agatgcaaat ttaatcaaaa ctccaaatat ttcagcttct attccacagc tgaaagctgc
    11461 tattaaagaa ttgcaggaaa agggttatat gttaccaaac tacccagacg aaccaaaaaa
    11521 cgatgaagaa tttcaaataa aagcaaaata tcaaaaagtt ttaggttcag cggttaatcc
    11581 tgtgcttaga caaggcaatt cagatcgccg ttctactaaa gcggtaaaag attatgcaaa
    11641 gaataatcct tatcgtgtgg ttgagtttaa tcctaattct aaaactcgtg tatcttatat
    11701 gaaagaaggt gatttctttt ctaatgaaaa agcggtttta atcgatgagg attgtgtagc
    11761 aagtattgaa tttgttgcag atagtggtaa aagtgaaatt ttaaaagaag gcttaaagct
    11821 tgaaaaaaat gaaattttag atgcaacctt tatggatgta gaaaaattgc aagattttta
    11881 tgctaaagaa atcaaagcaa gcaaagataa tgatttactt ttctctcttc atttaaaagc
    11941 tacgatgatg aaagtaagcg atcctatact ttttggttat gcggtaaaaa tcttttttaa
    12001 agaattattt gatgaattta aagatgaatt tgaaacactt ggaatcaatc caaacaatgg
    12061 attgagcgaa cttttaagca aggtgcaaac ttcaagcaag aaagacgaaa ttttaagaag
    12121 atacaacgaa attttaaaca gtcgtgctga tatttctatg gtaaattcag ataagggtat
    12181 caccaattta catgttccaa gcgatgttat tgttgatgct tctatgcctg ctatgcttaa
    12241 aaatggtgca agattatggg ataaagaagg caaagaaaaa gacacaaatg cagttatccc
    12301 tgatcaaact tacgcaacta tttatgaagc ggttatcgaa gatttgcata agaatggcac
    12361 tttaaatcct gcgaaattag gcagtgtatc taatgtaggt ttgatggcta aaaaagctca
    12421 agaatacggc tcacatgata aaacatttgt tgctaaagaa gatggagtgt ttaaaatcat
    12481 tgccaaaggt aaggttttat tagagcataa agttagaaaa ggtgatattt atagagccaa
    12541 tcaagctaaa tttgacgctg ttttaaattg gatcgatttg ggtatagaaa gagctgattt
    12601 gacaggagct gaagcgattt tttggctaga cagtaaaaga gctagtaata aaattatgat
    12661 agatttagtt caaaaccgtc ttaaggaaaa aaataaaaat atagctatcc ttgctcctta
    12721 tgaagcttgc ttaaaaagct tagaattgat tcgtgctgga aaagatgcta tttctattac
    12781 aggaaatgtc ttaagagatt atttaaccga tctttttcct attctagagc ttggaacaag
    12841 tgctaaaatg ctttcagttg taccaatgtt aaatggtgga gctatgtttg aaaccggagc
    12901 aggaggttca gcaccaaagc aagtagaaca attagtcgaa gaaaatcatt tacgttggga
    12961 tagcttgggt gaatttttag ccctacaagc aagcttagaa ttttatgcta ataaatgcaa
    13021 taatcataaa gctaaagtct tagcagaatg tcttgatgag gctataggtg aatggcttga
    13081 aaacaataaa gctccatcaa gaaaagtaaa agaagatgat aatcgtacaa gccattttta
    13141 tttagcaatg tattttgcaa atcatttggc aagacaagca aatgatatgg agcttcaaag
    13201 cttttttaaa gatattgcct tagagctttc ctctaatgaa gaaaaaatta gagccgaatt
    13261 taatgatgca caaggtgtga aagtcgattt gggtggatat tataaatttg atgatgagaa
    13321 agcaaataaa attatgcgcc caagtgcaac ttttaatgct atcatagaaa aaataggaca
    13381 aagatgaaaa tcacaatcat cggtgcaggg aatgtaggct caagcgtagc ctatgcttta
    13441 attttgcgtg aattggcaaa tgagattgtt ttagttgata tcaatgaaga tttattgatt
    13501 gcaagggaat tagaattatc ccaaagcata gctgctttaa atttagacat agaattaact
    13561 tgtactaagg attatgctta tacaaaaaat tctgatattg tgctttttag cgcaggattt
    13621 gcaagaaaag atggccaaag tagagaagag cttttgcagc taaatacaaa cattatgctt
    13681 gattgtgcta aaaaaattaa agaatttaat cctgatccac tttttatcat tttaacaaat
    13741 ccggtggatt ttttgctcaa tactctttat gagagtggaa ttttttcttc taaaaaaatt
    13801 gttgctatgg caggggtttt agacaatgca agatttaagt atgaagtagc taaaaagtta
    13861 aaagctagaa tttcaagtgt ggatacaaga ttaattggtt ttcataatga tgatatggtt
    13921 ttagtaaaat cttatgcaag tgttaaaaat caaaaactcg gagaactttt aagcgaagaa
    13981 gaatttgagg atttggaaaa tgaagttaaa accggtggag caaaggtgat taaacatctt
    14041 aaaacttcag catatttggc acctgcaagc gcttgtgtaa gaatgctcga atccataaga
    14101 agtggagaat ttttacctat gagtgtgatt ttgcatggag aatttggagt gcaaaataaa
    14161 gctttaggta ctatggcaag attgggttta gagggcgttg ttgagattat gaagcttgaa
    14221 cttagcgacg aagaaaaaga caagataaaa aaatcattaa taaaatatca atatataaag
    14281 gaagataaat gaatatacat gaatatcaag caaaagcgat ttttgcagac aatggtatcc
    14341 ctactttaaa gggaaaggtt gcatttagcg tagaagaagc tgtagaaaat gctaaagaat
    14401 taggcggtag cgtttgggct gtgaaagctc aaatccatgc aggtggtcgt ggtcttggtg
    14461 gtggtgttaa aatcgctaaa aatttagatg aggtaaaggc ttatgcaagt caaattctag
    14521 gtatgaattt ggttactcat caaacaggac ctgaaggtaa gctcgtgcaa aaactttata
    14581 tagaaagtgg tgcaaatata gtaaaagaat attatttggc tattttattt aacagaatgg
    14641 cagaacaaat tacaatcatt gcttcaagcg aaggggggat ggatatagaa aaagtggcta
    14701 aagaaagccc tgaaaaaatc gcaaaagtag gcattgatcc acaaattggc tttaaaatgt
    14761 ttcatggact tgaagtagcg agagttttag gacttgataa agatgaaagc aaaaaactta
    14821 tttctatgat agcaaaactt tataagcttt atatggataa agatatgaat atgcttgaaa
    14881 tcaatccttt aattaaaact gcagaaggag atttttacgc tcttgatgca aaatgtagtt
    14941 ttgatgacag tgcactttat cgccatccag agattgccga acttagagat atcacagaag
    15001 aaaatcctgc tgaaagagaa gcagctgaat ttggtttaag ttatgtaaaa ttagacggtg
    15061 atgttgcttg tatggtaaat ggtgcaggac ttgctatggc aacaatggat attatcaatt
    15121 atagtggtgc aaaacctgca aacttcttag atgtgggcgg tggcgcatct gctgaaacag
    15181 ttgcaaaagc ttttgaaatc attttaagag ataaaaatgt taaagtaata tttatcaata
    15241 tttttggtgg tattgttcgt tgtgatagaa tcgcaaatgg tattttggag gcaactaaaa
    15301 atgttgaggt gaacattcct atcgtagtgc gtcttgatgg tacaaatgca gctgaagcaa
    15361 aagcgatctt agatagttca aatcttaaaa atatcaaagc agcaaccaat cttaaaaatg
    15421 gtgcagaatt agtaaaaagt ttagtaggat aaggataaaa aatgagtata ttggttaata
    15481 aaaatacaaa agtaatagtt caaggtttta caggtaaaga agcaactttt catgcagagc
    15541 agtgtatggc ttatggtaca aatatagtcg gaggtgtaac tcctcataaa ggtggtcaaa
    15601 ctcatcttgg caagcctgtt tttgatacag ttgcagatgc agttaaagcc acaggagctg
    15661 atgtaagttt gatttttgtt cctgcttttg cagtaggtga tagtgtgatt gaagcagcgg
    15721 atgcaggcat taagcttgct gttgtaatta cagaacatac tccggttaaa gatatgatgt
    15781 ttgccaagca gtatgcaaat aaaaaaggca tgaaaattat aggaccaaat tgtccaggaa
    15841 tcattacttc tgaagaatgc aaattaggca ttatgccagg ctttatcttt aaaaagggtt
    15901 gcgtagggct tatttcaaaa agtggaactt taacttatga agcagctaat caagtagttc
    15961 aaggtgggta tggaatttca acagcagtag gcattggtgg agatcctatc ataggacttg
    16021 cttataaaga acttttaagt gaatttgaaa aagataacga aacaaaagct attgttatga
    16081 taggggaaat cggcggtagc ttagaagtag aagcagcaaa atttattaaa gaaaatatta
    16141 gcaaacctgt ggtagcattc attgcgggag cgactgcgcc aaaaggtaaa agaatgggac
    16201 atgcaggagc tatagtaggt agtgctgatg aaagtgctgc agctaaaaaa gaagcattaa
    16261 agtcttatgg aattcatgta gtggattctc cagctttaat cggtgaagaa atacaaaaaa
    16321 tattaggcta aaaaaggaaa aagatatgag tatagcagct ccaaaagata cccctgtttg
    16381 ggtagatgag catagatgta aagcttgcaa tatctgcgtt agctattgcc ctgcaggggt
    16441 tttagctatg cgcgatgatg ttcatgcggt tttgggacaa atgatagagg ttgtacatcc
    16501 tgagtcctgt ataggttgta ctgagtgtga aacacattgt ccagattttg ctattatggt
    16561 ggcaaaaaga gatgaattta aatttgccaa actgactccg gaagctaaag acagagccgt
    16621 agcagtaaaa aataataaat ataaaaaatt agcataggaa agacaatgag agaagttata
    16681 gcaacaggta atgttttgat tgcaaaagca gcaattgatt gtggatgtaa attttttgga
    16741 ggttatccta ttacaccaag ttctgaaatt gcacatgaat taagccatat gcttcctgca
    16801 aatgatggaa cttttataca aatggaagat gaaatttcgg gtgtaagtgt gactattggt
    16861 gctgctatga gtggcgtaaa atcaatgacc gcaagtagtg gtcctggaat ttcacttaaa
    16921 gcagagcaaa tcggtcttgc ttttatcgct gaaattccac ttgttattgt aaatgttatg
    16981 cgtggtggtc cttcaacagg tcttccaaca agggtggctc aaggggattt atttcaagca
    17041 aaagcaccta ctcatgggga ttttgctagt gtggctatcg caccagcgag tttagaagaa
    17101 gcttatacag aaaccataag agcgtttaat ttggctgaaa agtatatgac tcctgtattt
    17161 ttacttatgg atgaaactgt agggcatatg aatggtaaag cggtattgcc tgatttaaaa
    17221 gatatagaaa ttattaatcg taaaaaattc acaggcgata aaaaagatta taaaccttat
    17281 gcagcgggcg aaaatgaacc tgcaacactc aatccatttt ttactggcta tcgctatcat
    17341 gtaaccggac ttcatcatgg agatataggt tttccaacag aagatggcgc tatagttaag
    17401 aaaaacatgg aaagacttat aggtaaaatt aaaaacaacc aagatgatat ttgtacttat
    17461 gaagaatata tgcttgatga tgctgaattt ttaatcatag cttacggaag cgtaagtcgt
    17521 tctgctaaag aagctatcaa taggctcaga gaagagggta ttaaggtagg acttttccgc
    17581 cctatcacac tttatcctgt agctgaaaag aaaattgctg aagtggtaag caaatttaaa
    17641 aaggtaatgg taagcgaatt aaatatggga cagtatcttg aggagattga aagagtaagt
    17701 tctcgtcgtg attttattag cttacatcgt gcaaatggtc gtcctataac acctagcgaa
    17761 atcattgcta aagtaaagga gaatatataa aatggcgttt aattatgatg aatatttaag
    17821 aactgataaa cttcctactc aatggtgttg gggttgtggc gatggtgtag ttttaaaatg
    17881 tattatccgc gcgatagaaa agctgggttg gaatatggat gatgtttgtc ttgtttcagg
    17941 tataggatgt agcggtagaa tgagctctta tgtaaattgc aataccgtgc acactactca
    18001 tggtagagct attgcttatg caacaggcat aaaactagcc aatcctagca aacatgttat
    18061 tgtagtaagt ggcgatggtg atactttagc aattggtgga aatcatacta tacatggatg
    18121 tcgtagaaat atagatttaa ctcatattgt aatcaacaat tttatttatg ggcttactaa
    18181 ttctcaaact tctccaacta ctccaaaagg tttttataca gtaactgcac aatttggaaa
    18241 tatcgatcca aattttgatg cttgcgaatt aactaaagcc gctggagctt ctttcgtggc
    18301 aagaggaaat gttattgagg caaataaatt agaaaattta atttataaag ctttagcaca
    18361 caaaggttat agctttgttg atgttttctc aaattgtcat attaacctag gtagaaaaaa
    18421 taaaatgggt gaagcagtgg ctatgcttga ttggattaaa aatcgtgttg tggataagtc
    18481 taaatttgaa agcatggatt ttgaagaaag aaaagataaa ttcccaacag gtgttttata
    18541 tgaagatagc acgcagccag aatattgtca tgcttatgaa gaagtgcgtc gtgcagccaa
    18601 agaaaaaaga atggttgatt taggagcctt aaaatgaaat atcaattaag atttggtggc
    18661 gagggtggtc aaggtgttat caccgcagga gaaattttag ctgaagcagc gattaaagaa
    18721 ggtcgtcaag cctttaaagc ttcaacttat acttcccaag tgcgtggagg tccgactaag
    18781 gttgatatta tcatcgatga taaagaaatt ctttttcctt atgcggtaga gggcgaagta
    18841 gactttatgc tttcaactgc agataagggt tataaaggtt ttcgtggcgg agtaaaagag
    18901 ggtggcatca tagttgtaga accaaatttg gttcatcctg aaagcgaaga ttataaaaaa
    18961 tggcaaattt ttgaaattcc tatcattact atagctaaag atgaggtagg taatgtagct
    19021 actcaatcag ttgttgcact agccatagct gcttatatga gtaaatgtat tgatttggat
    19081 attcttaaag aaacgatgct tcatatggtt ccagctaaaa caagagatgc aaattctaaa
    19141 gcttttgatt tgggtgttaa atacgcacaa gaaaccaaag ctcattctta aataaatttg
    19201 ggtttattcc caaatttatt gcttcttgaa ataaattttt aaactttttc attttttaat
    19261 ttagctactt ttaacgatta aaattttata atcaaaaaca tatttattaa ggaaattcaa
    19321 tggatatttt tgacgaaatg tttaataaaa ctcctaagga aaaatttata gaaattatac
    19381 aaaatggaaa tttaggagct ttagaaaaag tatttgaaaa cttttttgct gatcatattg
    19441 ctatgatcga gcttttagaa aaacaaggtt ttaatgaaat ggatatgaaa agctttatac
    19501 ttgaaaatgg agattttatt caagaaaggc aaaacgatct ttttatagaa ttaggtgcta
    19561 aaattttagg acatgagggc taatgagcat taggcttttg gtttttttta ctttgatggc
    19621 aaattgcatt gttttaaatg ctgctcctgt ttttgattat acatataaat ttacacttaa
    19681 aaaagacgag agagctagcg tggagattaa agagcttggt tatgataatg gggttcaaaa
    19741 ttttgatttt tattggactt tgtttgataa taccaatata gtcgttcatt ctaaatttcg
    19801 taaatatccg cgtcaatttg tgatgagttt aagaagaaat ttggactggg taacccaaac
    19861 tttaattcct gattataaaa atccacatat tgatagagca aggcttattt tagaatttag
    19921 cgaatacaaa aaaggtgagg caatttttac tgtgtatata gaagataagg attctagact
    19981 tgaagtgaaa tttcttgatc caagaaaaat gcaattaaca aatccacctc aaaataatca
    20041 agtagtgcct atgatagatt ttaatgaacc tcaagtagaa ccattgatac aacgagaaaa
    20101 taccacaaac taaatttgaa ggatataggg tgcagccaat agatgatttg ataaaacaat
    20161 atttgcaaga gcttgattat gaacctattt taactatgct tgctaatacc aaatcaggca
    20221 aaaaattgcg ttcaaagcta cttttagcaa tcgcaggaga aaatgcaaat tcttataaaa
    20281 tttgtgccgc aatagaactt atacatttag caagtttgtt gcatgatgat atcatagatg
    20341 aaagcaaatt aagacgtggt gcaaagtctg ttaatgccga atttggtaca aaaaacgccc
    20401 ttatgcttgg agatatttta tattcaaaag ctttttatga attgagccaa ctagatgctt
    20461 gttttgcaag tattatttca gatgcggttg ttaagcttgc tgtaggcgag cttatggatg
    20521 ttgagcttag caaaagtttt aatgcggata aagataaata tctaaagatg atttataata
    20581 aaaccgcagt tttaatcgaa gcaagtgcaa ggtgtggggc tattttggca aatttagatg
    20641 aaaaagcttt tggagaatat ggcaaaaatt taggtcttgc atttcaaatg attgatgata
    20701 ttttagacat taagggcgat gaaaaaaccc ttggaaaacc tgctatgaat gattttaaag
    20761 agggtaaaac cactttgcct tatatttatc tttatgaaaa tttaaataat gaggataggg
    20821 ctcaattaaa gaatttattt caaaaagatt taaacaatga tgaaaaaatt tggatacaaa
    20881 ccaaatttga agaaacaaaa gctttaaata aagctatatt ggaggctaaa gaatatgccc
    20941 accaagcagc actagctata aaagattttt ccaatgaaaa acttcaagat ataattcaag
    21001 ctatgataga tagggatttt taatgtatta ttgcatatct tttactcata aaaatacaga
    21061 tctttcttta agggagagat tgagtttttc agatgaagca aaaaaaaacg agtttttgag
    21121 attgctaagc attcatgaaa atattgaaga atgtttggtt ataagcactt gtaatcgtgt
    21181 agaaatagta gcttatgtaa aagaagcttg tgcagaatat attattaaat ccttagcttt
    21241 attatgcaat gtagataaag aaagcttagt tcaaaaagct gatatttttg aagatagcgg
    21301 agctattcat catctttttt cggttgcaag ctcacttgat agtttggttg ttggagaaac
    21361 acaaatcgta gggcaattaa aagatgcttt tgcttttgct ttaaaaaata atttttgcgc
    21421 ggtacatctt tcaagggcaa ttcacagtgc atttaaatgc gcagctaagg ttcgtaatga
    21481 aacccaaatt tcaaaaaatc ctatttcagt cgctagtgta gcagtagcta aggctaaaga
    21541 acttttgcct ttagatggaa aaagtgctat agttataggt gcgggtgaga tgggagagct
    21601 tgcagccaag tatttaatca ctgctggagc tagagttata gtgttaaaca gggatatgga
    21661 aaaggctcgt atcctttgtg agagattggg tgttttaagc gagtgcgata gcttaaataa
    21721 tttaaaaaaa tatcttgatg agtatgaact ttttttctca gctaccaatg ccccaaatgc
    21781 tattattaca aattctttaa tcgatgaggt ctctcataag agatattttt ttgatattgc
    21841 tgtgccacga gatattgata ttagtgaaaa tgaaaaaata tcagtttttg cggtcgatga
    21901 tcttgaagtt gttgtgcgaa aaaatttagc cttaagagaa caagaagcgc gtatggcgta
    21961 tggtatcatc gggcgtgaga cagcagaatt ttttagatat ttaaatgatt tagctttaac
    22021 tcctattata aaagcgattc gcttgcaagc aaaagaatgt gccaacaaac agcttcaaat
    22081 cgctttagat aaaggatatt taaaacattc tgatgaagaa gaggcaagaa aattaatcca
    22141 tcaagttttt aaagctttct tgcatactcc aactatgaat ttgaaacatt tgcaaggtaa
    22201 aatgcaaagt gatacagtga ttaatgctat gcgttatatt tttgatttgg aaaataatct
    22261 tgaaggttta aatcaataca catgcgaatt taatatggag aataatgatg aaatttagta
    22321 aattatatgc accaagtctt aaagaggctc caaaagatgc gactttaccg agccatattt
    22381 ttttaacacg cgctggcttt gttgagcaaa ttggtagtgg gctttataat tttttacctt
    22441 tgggaaaaag agtattggat aaaattcgca ctattgttaa ggaagaaatg gataaagcag
    22501 gagcacaaga ggtaaattta agctttgtga ctccagcgac tttatggcaa gaaagcgggc
    22561 gttataatgt ttttggtaaa gagcttttgc gttttaaaga tagaaaagaa aatgattttg
    22621 ttttaggccc aacgcatgaa gaggctatgc tttctttggt aaaaaataaa atcacatctt
    22681 ataaacaact tcctttgcat ttatatcaaa tagggcttaa atttcgtgat gaagcaagac
    22741 caagatttgg gcttttaaga tgtcgtgaat ttttaatgaa agatggttat agttttcatg
    22801 caaatgaaga agatttaacg cgtgaatttg atttgatgta taacacttat tcccaaatct
    22861 tgcaaagaat ggggcttgat tttagagcag ttgaagctga tagtggggct attggtggaa
    22921 gtggttctaa ggaatttatg gttttggcaa aaaatggtga ggatgatatt ttaatttgtg
    22981 aaaattgtga ttatgctgca aatgttgaag ctgcagttag agccaataaa acttgtgatg
    23041 aagagcgtcc tgaagcaaat tatgcaagta aatttcacac tccagatatt aaaaccatag
    23101 aagctttagc gcaatttttt aaaattaatg ctttttatac tatcaaggct gtggtgaaaa
    23161 aagctattta tgaaaatgaa aataaattag ttgtgttttt tatacgcggt tgcgatgatt
    23221 tacaagaaac caaagcgcaa aacgcttgca atgctcttga gcttgtggat gcgagcgaag
    23281 aagaattaga aaaagcggga ttggttgcag gttttatagg ctttgtgggt ttgaaaaatg
    23341 ttgattttta tttggataaa gagcttgaag gcgaaaaaca aatgataatg ggagcaaatg
    23401 aaaaagatta tcatttaata ggcattgatg tagttaattt aaacaaagat cgctttaagg
    23461 atttagcaga ggttaaagaa aatgattgct gtgctaaatg tggtggaaaa ttaaaattaa
    23521 gcaagggtat agaagtaggg catattttta aactaggaca aaaatattcc aaagcgatga
    23581 atgcaaattt cttagatgaa aatggcaaaa gtcagccttt ttacatggga tgttatggca
    23641 taggtgtttc acgcttgttg gctgtagcta ttgaagcaag tcatgatgaa aaaggatgta
    23701 tttggaataa aaccttagct ccttttacgc ttgaaattat aatttcaaat atcaaagatg
    23761 agaagtcttt ggaatttgct accaagcttt atgaggattt aagcaatgca ggtattgaag
    23821 ttttacttga tgatagaaat gagcgttttg gtgttaagat gaatgatttt gagcttatgg
    23881 gctttcctta tgctttagtt gtaggcaagg gcttagaaaa agatgagtta gaatttatag
    23941 atagaaaaac actagagaaa aaaatcatat caagtaaaga agtatttgat tttattaaaa
    24001 agagtgtaga atgaattaca agctaagcct tagtccgctt tttttactag aacttgttgc
    24061 aagtatttta tttattgtat tttttggttt gggaaatttt ttaattttta ttttagctag
    24121 tatgattttt ggagtaattt tgctcggaat tttttggaaa aatatgcttg aatttcgtat
    24181 aagcggtttt aaagatatgt tgactcaatt tgcttttgta atggcggctt ttttgtttat
    24241 ctttccagga atagtaacga gtatttttgg attttttgtt ttgtgttttg gtttgatttt
    24301 taattttgct aagcctagat ataaaagaaa ctacagacaa aataacactt ctgatgaaga
    24361 aattatcgat gttgaaatta tagaggagag aaaatgaaag agcttgttat agctacaaga
    24421 aagagtcaat tagctctttg gcaaagcgaa tttatagcag attttttaaa taaaactcat
    24481 ggcatagcag ttcgcttaga aggctttaaa accaaaggag atgttttgtt agatagccca
    24541 ctagcaaaaa taggtggtaa aggacttttt actaaagaac tagaagaaag tatgctaaga
    24601 aatgaagcgc atttagctgt gcatagttta aaagatgtgc caagtttctt tccgcaaggc
    24661 ttggttttgg ctgcagttag caaaagagaa caaagtaatg atgcgatgtt gagtcaaaat
    24721 tataaagatt ttctttcttt gccaaaaggc gcaaagatag gcactacaag tcttagacgc
    24781 aaaatgcaac ttttattatt aagacctgat ttggaaatca tttctttgcg tggcaatgta
    24841 aattctcgta tagaaaaatt aaaaaatggg gattttgatg cgattatctt agctatggca
    24901 ggtattaagc gtttggattt agataaacaa gtaaattttg tttatacatt tagcaaagat
    24961 gagctaatcc cagcggcatc ccaaggagct ttaggcatag aaagtataga tgatgaaaaa
    25021 tttttaaaat ttttaaaatg tttaaatgat gacaatgctt tgatagaaac taccatagaa
    25081 agagaattta tctctacttt agaaggagga tgtcaagtgc ctataggtat taacgcagaa
    25141 ctcttaggag atgaaatttg tgtgcgtgct atacttggat tgcctgatgg tagtgaaatt
    25201 ttaaaagaaa aaagaatgat caaaaaaagt gattttaaag gctttggaga gagtttggct
    25261 aaggagttta ttgctaaagg tgctaaagaa cttttaaaaa aagctgagag tatgatatga
    25321 aagaatttat tcaaatttta aaagaaaatg atcttttaag ggtaattgaa gaacctgtag
    25381 atgtagatct tgaaatcgct catttagcct atatagaagc taaaaaagga gaaaaaggga
    25441 aggctttatt atttaaaaat cctatagata aaaaattaaa taaacaatat aaatttcctg
    25501 ttttgatgaa tactttttgc aatgaaaagg ctttaaattt agcttttgga cgtgattatg
    25561 aagaggtggc tgaagaaatt tcaaaactca ccaagcttca tattcctact agttttaaag
    25621 caaaaataga tttttttatg aatttattaa gtcttaaaaa tgtcccacct aaaagattaa
    25681 aagcagataa agctttgtat gattatgagc ttttaaattc tcttgaagaa cttcctatac
    25741 ttaagacttg ggaagaagat gcgggtagat ttattactat ggggcaagtt tatacacaaa
    25801 atttggataa aactcaaaat aatcttggca tgtatcgttt acaagttagc gataaaaatg
    25861 agcttttaat gcattggcaa attcataaag atggggcaaa tttttatcat gagtataaaa
    25921 atgctggctt taaaaaaatg cctgtaagta tagctatagg cggagaacct ctttatattt
    25981 ggtgctctca agcaccttta cctaagggaa tttttgaact tttgctttat ggttttatta
    26041 aaaaaactcc tgcaaaaatt actccttgtg aaaatggtat ttttgtacct tatgatagtg
    26101 atgtggttat tgaaggttat gtggatttag aagagtttaa agtcgaagga ccttttggcg
    26161 atcatacggg tttttatact cctgctgaac tttttcctgt gatgaaagta gaaaaaattt
    26221 atgctaaaaa agatgcgatc tatcaagcaa cggttgtagg aaagcctcct ttagaagata
    26281 agatcatggg gcttggtact gaaagaatat ttttacctct tttacaaact tcagtacctg
    26341 atttaattga ttataatatg cctgaaaatg gggtctttca taatcttatc ttagcaaaaa
    26401 tcgatgcaaa atatcccgct catgcgcaac aaattatgca tgcattttgg ggagtagggc
    26461 aaatgagctt tgttaagcat gcaatttttg tggataaaaa tgcaccttct ttgaaagatt
    26521 atgatgcttt aattccttat atgttagatc gttttaatac aaagaaaatt ttaatttcag
    26581 aaggaatttg tgatcaatta gatcatgctt cacctaattc ttgttttggg ggtaaagcag
    26641 gacttgatgc ttgcgaagaa atacaagttg aagagcttga aattttagaa gatgaaaaat
    26701 tactagaact ttttaaaact aaggtagaac ttttaaattt aaagcaattt tataaagaaa
    26761 gtaaaagtcc tatagtttgt attttgcttg ataaaaaaga aaaaatcgaa caaagttttg
    26821 acaaactttt agaatttaaa aaacatttta ggattttagt gtttttagat gctgaaaata
    26881 agcttgaaaa ttcttatatg cttgtttggc gtgtggtaaa taatatagat gctaaaagag
    26941 atatttttat caaagaagaa agacttggag tagatgcaag tgctaaaggt gaagctgagg
    27001 gttatttaag agcttggcct aagcaaacag attgcactaa aagcgtgata gaagatttga
    27061 tcttgcgtaa tattttagaa aataatccag atctttttaa taaatttgaa attttttaag
    27121 ataattgaga tttattttaa aattttggca cagtttttgc ttattatttt tttattattg
    27181 aaaaataaaa ttttctttat aggtgttcat aaatttataa atttgtcgat ataagctttt
    27241 aactagcaat aggaaatttt aaaaaggatt ttaaaatgga aatatcgaag gcaaatgggc
    27301 aaatggatac agctttggca aacattagcc aaagaacaag tgagacgcag gctagttcaa
    27361 acattcaaac cgatagaagt caaagtcaag gaggcgatga tggacaacaa caaggtgtga
    27421 gtgaaaagtt agctgatatt acaaaaaagt taaatgagca aatggattct ctagatacca
    27481 atgttcgttt tggttatagt gataaaatcg gttctatgta tattagcgtg actgaaaaaa
    27541 gcactggaag ggaaatccgt caaattccta gtgaagaagc tatgagatta gccgagtatt
    27601 ttagggatgt gataggaatg atatttgata aggagagtta aaaatggcat ttggtagtct
    27661 atctagttta ggatttggtt ctggggtttt aactcaagat actatagata aattaaaaga
    27721 agcagagcaa aaagctcgta ttgatcctta tactaaaaaa attgaagaaa atacaaccaa
    27781 acaaaaagat ttaacagaaa tcaaaactaa attactaagt tttcagacgg ctgtttcatc
    27841 attagccgat gctacggttt ttgcgaaaag gaaagttgta ggaagtatta gcgataatcc
    27901 tccagcaagt cttacagtta attcgggtgt tgctttacaa agcatgaata tcaatgttac
    27961 tcaacttgca caaaaagatg tgtatcaaag caaaggatta gcaaatgaca gtggttttat
    28021 taatgcaaat ttaactggaa ccaccgatct tacttttttt tcaaatggca aagaatatac
    28081 tgttacagta gataaaaaca caacctatag agatttagct gataaaatta atgaagctag
    28141 tggaggagag attgttgcta agattgtaaa cacaggagag aaaagcactc cttaccgctt
    28201 aactttaacc agtaaagaaa caggcgaaga tagtgcgata agtttctatg cgggaaaaaa
    28261 agattcgaat ggtcagtatc aaagtgattc agaggcagaa aaaatatttt caaatcttgg
    28321 atgggaatta gatacaacga ctcagactat tgatccagct aaggataaaa aaggttatgg
    28381 tattaaggat acttctttgc atatccaaac tgcgcaaaat gcagaattta cacttgatgg
    28441 tattaagatg tttagatcaa gtaatactgt taccgatctt ggtgtaggaa tgactttaac
    28501 tttaaataaa acaggtgaaa ttaattttga tgtacagcaa gattttgaag gtgtgacaaa
    28561 agccatgcaa gatttggtgg atgcttataa tgatttagta accaatctta atgctgcaac
    28621 tgactataat agtgaaactg gaacaaaagg aactttacaa ggcatcagtg aagtaaattc
    28681 aatacgctca agcattcttg ctgatttgtt tgattctcaa gttgttgatg gaactactga
    28741 agatgcaaat ggtaataaag tgaacactaa ggttatgctt tctatgcagg attttggctt
    28801 aagtttaaat gatgcaggca ctttgagttt taattcttct aaatttgaac aaaaagttaa
    28861 agaagatcca gactctactg aaagtttttt ttcaaatatt actaaatacg aagacattaa
    28921 tcacacagga gaggtaatta agacaggaag tttaagtaaa tatcttaatt ccaatggttt
    28981 agaatttaaa ccaggagatt ttactatagt ttttaataat caaacatatg atttatctaa
    29041 aaattctgat ggtactaatt ttaaattaac agggaaaaca gaggaagaat tgcttcaaaa
    29101 tttagctaat catataaaca gtaaaggtat tgaaggctta aaagttaagg ttgaatccta
    29161 taatcaaaac aatgttacag ggtttaggtt gaattttagt ggagatggta gttcggattt
    29221 ttcaatcaaa ggaaatgcta gcattctcaa ggaattaggt ttgtctgatg taaatataac
    29281 ctctaagcct atagaaggta aaggtatttt ttcaaaatta aaagccacgt tgcaagagat
    29341 gactggaaaa gatggttcaa ttacaaaata tgatgagagt ttgacaaatg atattaaatc
    29401 attaaatacc tctaaagact caactcaggc tatgattgat acaagatatg atacaatggc
    29461 gaatcaatgg ttgcaatatg agagtatttt aaataaactc aatcaacagc taaatactgt
    29521 aactaatatg attaatgcgg caaacaattc taataattaa ggataaaaaa gatgcaaaat
    29581 aatttagcct ataatgctta ttctcaaaat caagtgggga tagagtctcc gcaaaaactt
    29641 attgaaatgc tttatgaggg aattttgcgt ttttgtgcaa gagctaaagt agccataaga
    29701 aatgaagata tagaacaaag agtgtatttt gtaaaaagaa ccacggctat ttttatagag
    29761 cttattaata ctttaaacta tgaaaaaggc ggagaagtgg cacattattt aagcgggctt
    29821 tatacaagag aaattcaact tttatctttg gcaaatttag aaaataacga agatagaatc
    29881 aatgaagtta taaatgtaac caaaggttta ctagaagctt ggagagaagt gcataacaat
    29941 gaaacagtgg ctcagtgatt ttaaacttgc attaatccaa gaagatatca ataaacttga
    30001 aaatttactt gatgaacttg atatgaaagc ttttattaaa aatttagcca aagaatcgcc
    30061 ttcagaagat tttttaaaag aaaatgcaaa tgatgtattt tatcaagttc aagctctttt
    30121 gcaagaagct gttatactga ttgaacaaaa gaaaaaaaca aaagctgttg aaattcaaaa
    30181 atttcaaaaa gcgttgacat attttaaatc ttaaaaaagc atagcgataa gccgagttct
    30241 gtctagaatg ctcatttatc tagttttgtt ttcgcaaaca aaatcaagcg aagggttaaa
    30301 acaaagacct taaccatccc ttcttgctgc acattgggtt tacatagccg aaattgttgc
    30361 caaaatcgct ggtaagcttt tacctcaccg tttcaccttt tccacttttg tggtagtttt
    30421 ctttctgttg cactgtccct taggtcgccc tagccatctg ttagatggaa tgtttgtctt
    30481 ttgcagctcg gactttcctc ttcttttttt aaagaagcga gcatttacta tgctttaaag
    30541 ctaaattcta acaaaaaaat gcttatttta ttatcaatta tattg
//
LOCUS       DBBXRO010000005        29671 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.005, whole genome shotgun sequence.
ACCESSION   DBBXRO010000005 DBBXRO010000000
VERSION     DBBXRO010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29671
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.005"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..245
                     /locus_tag="ACJFEZ_000130"
     CDS             <1..245
                     /locus_tag="ACJFEZ_000130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916283.1"
                     /translation="TREWMMTAEDIKRIFENKLNERTKNQKVIFTKNENERPHNGSSK
                     EIAKFLASLKDDAIMKEVVENTSNQAISLVREYKNV"
     gene            238..774
                     /locus_tag="ACJFEZ_000131"
     CDS             238..774
                     /locus_tag="ACJFEZ_000131"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916284.1"
                     /translation="MSRIAQPFLHFDATKMHSLILFFQKTFAKSYEKQSKDQVSLTKE
                     FEEKIINEILEQYIDYAIAYELVVEDVCPYKILAWYGYLLADALYIEQKELAILSIST
                     SIICMLKLLEIESVKLEDAFHKKALQMVVSELKGNHMKSEESNKKQHTKIGLGMNGLY
                     MMFRTASICKKINSQTLA"
     gene            complement(752..1729)
                     /locus_tag="ACJFEZ_000132"
     CDS             complement(752..1729)
                     /locus_tag="ACJFEZ_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HGG0916285.1"
                     /translation="MVRKPKFKLIAKGEDITEKLSKNLISISYEDKEKSESDEIGLSV
                     FGLYSKPLFGDSLELWLGFEKLYKCGSFSVNVVSKNYTSNTTEVRASAINFSGKDSVN
                     IKEKKTRSFENTTLFTIARKIANENNLKIKTSGEDQNIVSILQNNQSNLEFLYSICFD
                     YGFICCVKENTLIITPKDGKIGDNAANITSKNENLPLFEIALKECISLEISESARNEY
                     SAVIAEWQDINEAKIKSIKVGSGENIYKMQISQPKNDNEAFKKAQAKLNELQKGGLNG
                     RCELIGREIRAGGKLKIKDINMDNYEFSIKSVSHSFNDSAYVITLEFES"
     gene            complement(1723..1914)
                     /locus_tag="ACJFEZ_000133"
     CDS             complement(1723..1914)
                     /locus_tag="ACJFEZ_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HGG0916286.1"
                     /translation="MSKIYIAKNNERLDSIVYKHYGTLLYFNQVLLANPKLEPLLKTG
                     DKVVLPSIEIKESKEKALW"
     gene            complement(1907..2281)
                     /locus_tag="ACJFEZ_000134"
     CDS             complement(1907..2281)
                     /locus_tag="ACJFEZ_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HGG0916287.1"
                     /translation="MVLALGEFEFKALNFDNLERSLEYNIQSQNRLNNHNALFASSKE
                     SEKIKIQGKTLPLKGDRNTYLDKLENMAKEQKSYILTGANGKYYGKFVILALNENRSA
                     FVDGSGFVAQSFSMDLERDFDE"
     gene            complement(2407..3642)
                     /locus_tag="ACJFEZ_000135"
     CDS             complement(2407..3642)
                     /locus_tag="ACJFEZ_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor head protein"
                     /protein_id="HGG0916288.1"
                     /translation="MFFGKPNKAIEYLQSKKPQTSFDYDEIMHETHNKVFTIAKLNDL
                     NLLKDIQNSLIEALKNGDKFETWKKQITPKLKAKGWFGDKVEVVNPKTGEVKNIKIGT
                     SRLKKVFETNMRIAKAQAVWENILQSNKEYVRWISLLHGNRRKEHLALHGMILRRDDP
                     FWINNRPPCGYGCKCSIQGVSESELKLYGWKLSKQTPADLADKNFNYNKNLGVEKLEK
                     LYKEKISQISQNFIKLEALSLATKTKENAQSFQREKELYIWQKSLDDMVDEVIIKDNQ
                     KYPINFIQVGKMDKSTKEFLEKLNKKDLEDLYFALSKNNLLHASPKRKASYNQALSVD
                     EIKQIVKVLDEAKEVYWDNANNSLLYFFKDKKDASRINKIVITPDYKLKKFGKTNAIV
                     TLGKVEAINKDNKTYIKIR"
     gene            complement(3645..5015)
                     /locus_tag="ACJFEZ_000136"
     CDS             complement(3645..5015)
                     /locus_tag="ACJFEZ_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HGG0916289.1"
                     /translation="MKKEIKSKREVILKNNSLINTLINSSYLNVLKISENDQKMIFKD
                     LSFTQAHQSRRSVILAKELQIVCENEKIKESLEYLFNPDLLSQILETYLYGLNVFEVN
                     YKLKDGFYYPILKQRDFRNFGFNENDELVYNGNGFEEIVEDKKAIYGLFGSNFLFKNG
                     DALLTKLYFPVKLKNASLKFWMEFLERFGSPWAVAKTDSDPDALASEIHQMLNGDSAV
                     IDKEEELDLIQPKAKANYNEIIDYLDNQIRSVVLGANLSSQVSGGSLAAAESHNQIRK
                     DLAAQDGQIVLFILNRAIKFFKEINHFKDELYVQFFSEAEPKSELCERDLKLFNMGFC
                     FDEEYIKSTYNVEGELIRETLEKKDFKDLENDKKVFENKVKFIQKKPMDKIDAALESK
                     EFKVIDEQIKEKLEQAFNQLLNDSNSYEELFENLQKEFSDISINILEEFMFQALANSS
                     ILGYGD"
     gene            complement(5025..6695)
                     /gene="terL"
                     /locus_tag="ACJFEZ_000137"
     CDS             complement(5025..6695)
                     /gene="terL"
                     /locus_tag="ACJFEZ_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HGG0916290.1"
                     /translation="MLFSKEELDEFLISNEQKHENTPNELKGAMQRKDFLEWMDELKN
                     ELKTQFLHESHLDPTLKEKRIKRASVDFDYFARTYFPHYFTIKGECGLHLHLNEVFTK
                     IALKKESKGEKHAIAAPRAHGKSTYTSQLFPLWCLVFNYKSFIVEISDAVELMEGMLE
                     AIKAELEDNPHLKLDFPEVVGIGKTWRVGEFVSNNGVKIKAFGSGKRLRGVRYGVKRP
                     DLVILDDLENDTNVRSKDQRDKLEDWVDEAVLNLGSADGSLDVLYIGTILHNDSVLSR
                     KLKLGFWNPKVFRSIEEFPQRLDLWDEYATLYRNTDFNTAHQFYLKNKVLMDKGAKVL
                     WKEAKSLEDLMKLRAENLKAFNKEQLNNPRSENQIFSLDGINFYDDLPAINQYYMYID
                     PAGEKAKSDFTAITIIGKGAKGFYVAESIVKILKAQSIIKTIFNLQKIYKCRLIEIET
                     NGGQFFLKKWLQEKSLESGVFLPLRGKNNSVSKFERIESLSLAFENEELFLHKSQTML
                     INQLLEFPEGKNDDAPDSLAGAFLLARTKSSIKRRKHHFNSVSRIRRF"
     gene            complement(6695..7177)
                     /locus_tag="ACJFEZ_000138"
     CDS             complement(6695..7177)
                     /locus_tag="ACJFEZ_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HGG0916291.1"
                     /translation="MANNELKDLAKELYIAGFDIFKIAKILNRNEKTIRNYKAKDGDW
                     DKQKANLLTSKIKDKESASLYESFTEQMFCAIENINTDEKMNAEKKTEAIARIGDSFS
                     KMRKVARLEDPSSYRLNVAKKVVEIIISHLKNDKDCVAKLVSLLESGVIEKEILAMDI
                     "
     gene            complement(7170..7628)
                     /locus_tag="ACJFEZ_000139"
     CDS             complement(7170..7628)
                     /locus_tag="ACJFEZ_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protein Gp36 family protein"
                     /protein_id="HGG0916292.1"
                     /translation="MNYQDTLEEELITGTKTHLFMIDEKDLIKELSVHAIAELSDLNA
                     DGVCDKEVIDDAISDAQSYIASFIKIPKNPTPLLKDICVKLTIMELKRRNDFPKESLE
                     EIKEWANDLLLKMANKKIPTEIDKDNFIPQNKVRAFKIKRKRMDLRRING"
     gene            complement(7744..8721)
                     /locus_tag="ACJFEZ_000140"
     CDS             complement(7744..8721)
                     /locus_tag="ACJFEZ_000140"
                     /inference="COORDINATES: protein motif:HMM:NF015802.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HGG0916293.1"
                     /translation="MDLEQLLELFSSTKITEVINQTKASPRFVSDTFFKDKIPSLEST
                     VRVEIIKGAGIVLNSISDNGEHSLENTKDAYILNIPLPRFALAKRISASEINSLRSLA
                     LQEAQAKSLSGALGVLVKEMKESFNTTLEYMANGALFGKILDGKGNVLFDFGSASKKA
                     VSVKKDGSVTLASICDAIDSAIIDEFGTSADYEVLCGNELFAAISNLALSEDLYKNHL
                     ASRDEKDKSLILYGTKYRRYSAKYKNTNGKSVEFLKGTEGMVVPKDNSNRIYYTRANH
                     TDALGKAPSLMFVSKPEILPRGAGIEIVGEMRAMPVCTRPNGLIKLVLE"
     gene            complement(8724..9251)
                     /locus_tag="ACJFEZ_000141"
     CDS             complement(8724..9251)
                     /locus_tag="ACJFEZ_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916294.1"
                     /translation="MAKAKKETQNLENEDLETGDLPKALSLEDENLANEEAVSENETA
                     KEFINEEGEEMPSKVTSKSLSNDPLIAMPKSLESFINKDLFSINAKIDLETNESLALG
                     TLLISEDFGESFKKCPNEDISAKENVKLAMLKDHALSSGVYGVLLAGEINLKGVHVSA
                     VKKAFMQNLIINTKE"
     gene            complement(9254..10069)
                     /locus_tag="ACJFEZ_000142"
     CDS             complement(9254..10069)
                     /locus_tag="ACJFEZ_000142"
                     /inference="COORDINATES: protein motif:HMM:NF021627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HGG0916295.1"
                     /translation="MLFINKENLVEVSNDKPIKVAIKGEWKGHNNGRFKVDDKDLNSM
                     IDNFNQKKIDLVIDYEHQSLKNEKAPAAGWIKELYLENDALMAKAEFNEEAKKYIANK
                     QYRYLSPVFEFNSKDNKSGELVRAKLHSVALTNTPFIDELGELIANKNNIHQNKGEKM
                     DEKIKELESQIIALKNENSSLALQNEALKKQNEESVKNLASSLVDNALNSGKIANSQK
                     EWALMYACKDLEGFKSFLDTENDQVQVPKNNVFANKNTAKTNEFDVVKMMLGD"
     gene            complement(10071..10505)
                     /locus_tag="ACJFEZ_000143"
     CDS             complement(10071..10505)
                     /locus_tag="ACJFEZ_000143"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916296.1"
                     /translation="MLKSFENELLELLKDFKVRMYLGEFEDTQNIASCINNLDASLLL
                     DFEGESYKDLENKVGTWKLYILTHTKSKAPKHRIDAKHKLFDAIEAVDKVLLNAEPSN
                     GFRIELKDLKKVYEGISDHGYLSIYARTLQSSFLPKDDFLRI"
     gene            10653..11042
                     /locus_tag="ACJFEZ_000144"
     CDS             10653..11042
                     /locus_tag="ACJFEZ_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HGG0916297.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNVPSDELIDILCEIREHYNAP
                     VIINSGYRCKEHNAEIGGAPKSQHAIGSAADFVVKGVKTEEVHQYVLNTYGERSLGIA
                     IKHNFNDPYAGFVHLDTRGKKARWTYP"
     gene            11053..11394
                     /locus_tag="ACJFEZ_000145"
     CDS             11053..11394
                     /locus_tag="ACJFEZ_000145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916298.1"
                     /translation="MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLK
                     ALHFNNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCESELKAY
                     KELFNILGAKK"
     gene            11391..11639
                     /locus_tag="ACJFEZ_000146"
     CDS             11391..11639
                     /locus_tag="ACJFEZ_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916299.1"
                     /translation="MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKL
                     PLKPLDKKDLESAKKISKYYLEVENIAKLCTGEKDERK"
     gene            11751..12065
                     /locus_tag="ACJFEZ_000147"
     CDS             11751..12065
                     /locus_tag="ACJFEZ_000147"
                     /inference="COORDINATES: protein motif:HMM:NF027409.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HGG0916300.1"
                     /translation="MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFL
                     KGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKME
                     KL"
     gene            12065..12697
                     /locus_tag="ACJFEZ_000148"
     CDS             12065..12697
                     /locus_tag="ACJFEZ_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HGG0916301.1"
                     /translation="MNELGIICDIKDNKAKVAIGDMVTDFLSVFQSLANSYAVSFSPL
                     RIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTL
                     KLDVVKNINITCVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTS
                     GEGGASGTFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR"
     gene            12894..13184
                     /locus_tag="ACJFEZ_000149"
     CDS             12894..13184
                     /locus_tag="ACJFEZ_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HGG0916302.1"
                     /translation="MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDF
                     KIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLNITLLFENYGDLTMELGK"
     gene            13181..14347
                     /locus_tag="ACJFEZ_000150"
     CDS             13181..14347
                     /locus_tag="ACJFEZ_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HGG0916303.1"
                     /translation="MSELLSANDSYFKQSFLKDIPYPKIIEELDFEKILKDLEELFKS
                     FLKEDVELLESDPFKAVLEALAYREMIIRARINESIKATYLHYASGSDLDNVVVNGYL
                     IERLKGVKPSAKVEFKLNSLLTYDVIIPKGAIFSNEKADIATLKEEVVIKKGENKASG
                     VLELDEFIESKERKTEFLQTPLPFVAKIKQLEFFKGGASEESDEALRERAIMSVHRFS
                     TAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRP
                     LTDEVSVELAKKREFIVDAKLLLLELSRANEISQKINALQKDFDLSVDLALGFIYKCL
                     HQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL"
     gene            14344..14964
                     /locus_tag="ACJFEZ_000151"
     CDS             14344..14964
                     /locus_tag="ACJFEZ_000151"
                     /inference="COORDINATES: protein motif:HMM:NF021220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HGG0916304.1"
                     /translation="MNTLILNHHPKQSKAIDLSAKARFEDLKIESITNLAMRCDERLL
                     PVLANAYDVSIDGLEEKEARKLISKALLLDRYNGTTWAIKEALSAVFPTAVVKEWFNY
                     GGKPYFFKVKVSTTNVSFDERTLNTLERLIKDFKNVRSVLEAIEIEIESKNDSFNASA
                     ELSGEAIEILPFQTTFLENEIKSTKNAFGVFICEISKTNIDFKGVY"
     gene            14964..15998
                     /locus_tag="ACJFEZ_000152"
     CDS             14964..15998
                     /locus_tag="ACJFEZ_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HGG0916305.1"
                     /translation="MAKSEYYTILTKIGIAKFIAARASGNGVNLKSFKLSSKVILPSE
                     EMQSLEEIVYEANINSKSVDENNPNYINLMCYVPSDIGGFEINAIGIYDEVGDLLAVG
                     NLPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKIELELK
                     IETLKEELKALINTKEDKGVAANLDKALKTELTKLINKKENTGTAASLDAQLRDELIA
                     LINKKENIGVAKQLVDALRSELTKEIKSFIPELRVEKRIITAKYDYDRKKRQTVLVSL
                     SNIPSEVNMSTYLSKCANSGFPEIAPNYSMSQLKGEHLIYYLNDQYAASYAYQAISYA
                     PSGSTNNNNY"
     gene            16008..16643
                     /locus_tag="ACJFEZ_000153"
     CDS             16008..16643
                     /locus_tag="ACJFEZ_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916306.1"
                     /translation="MFYNLSQEDFLKLEESIAKIIKKLEVLQGLEDIKSINKAKHLNE
                     CKESLNQCLEKKDKDKYDFFIYEIYNLTWGTKPFDEIDESEKISANLKVDKYQENIPS
                     LKEIAQSVLKEEVDDLINDHPLMLEKLKDYDEFGVPRKISIRQAKLALLEVGLLENVE
                     IMMQSADKATQISWEYATEFERQNELILFFQQQTKLSDEFVDELFKKAKEY"
     gene            16643..18400
                     /locus_tag="ACJFEZ_000154"
     CDS             16643..18400
                     /locus_tag="ACJFEZ_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HGG0916307.1"
                     /translation="MIGKILTFVPNSYCNFACSYCYLGKLTERKEKTTDMAEQFKKIA
                     KKLKDDGVIITEVILHGAELSASPYEHVKELLKAIDEYKKENHFLIRVLSKDSKKGHH
                     YIHLKTNLYFLDRFFELFKKYEVGISASIDLPLRFHEKYRVLKSGKSTLEKTLKMIEL
                     LSAYPYFKQISTTMTKEHLNVDEFIRDVYKLESLGFDMASDFYIMFTYQSANAQGDFQ
                     MPSDEDMLSFYKNLREKLKDTKYSFALEHFWFKEFLGGYCTNCTNCGDNLLIQKNGDV
                     YVCHRSQALNELRAGNIFNENYESLKIRNITNIRILENSLKLHKDCLECDYFHLCKAS
                     CTIERNDTKLGKSYTCALQKAIYKNNAEFFKADKTLAEISLDEFLRQNQTNNYKSFLI
                     PNLSLEFRESKNSLENIINDDEILQKLYLKDNFLISVNDELALLDFEKDALYKSFKIS
                     SKDNIKLLIKKEVFDYSTKETLSNFIYMSLLGGEAKVYGDEKREKTLHIETKHLYLEK
                     LLNESLELEGYLIYDISSFLKENSRLYSLNHKNFIFFTTKALREYHYEKQAKNAFYHA
                     QTINLPFLRFEFTWEDKND"
     gene            18393..18779
                     /locus_tag="ACJFEZ_000155"
     CDS             18393..18779
                     /locus_tag="ACJFEZ_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HGG0916308.1"
                     /translation="MTKTELKRVCVKPYDKDKFEVVENYEFSLPNYKGIVPKGFKTDG
                     ASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRSDYKIADLALKEAMAFLGCSKFK
                     IFVFYHSCNLYHVIKCIFKSIKKELK"
     gene            18776..19789
                     /locus_tag="ACJFEZ_000156"
     CDS             18776..19789
                     /locus_tag="ACJFEZ_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916309.1"
                     /translation="MKDYGISYIPNANQSSKEPSEPIVSDKLNAQKVNELIDKKLNLF
                     KEGLANQEELKSLIREILKDQNFQNTNIKISKTPPNYNTQAKVGEIWAVLESKKQLFI
                     CIANDNDFTSWVDLLGDGSNDIAPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFAT
                     PNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIA
                     HVFKKYNGGSDECCLWSSSGTREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKS
                     IFIGEQEIQSEDFNVEKLEASSDTYGDYAFLFEISKQDQIVMKKELNLNPKKTKNTKN
                     VKK"
     gene            19800..20993
                     /locus_tag="ACJFEZ_000157"
     CDS             19800..20993
                     /locus_tag="ACJFEZ_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HGG0916310.1"
                     /translation="MAANYGVNFNISNGAASPIKVQSDTPIGIAGAIKGASKEMIYTK
                     AGYESVDNFPIFAFSNVSKAKEFVNDLIKENNLQDFRLLDTLECINLQNVFNVIIISF
                     FEESEESENTLTHIVNAIEAFKKAKHKTGFSPDLIIAPYYSHEAGVKAKLESVASSMN
                     ITAIVDLYATNVGEAINTMEAFSSKRLIATWPQVQILNTQGKYAYVPQSPIIAGLIAH
                     TDGDKEYGFSDSYSNRVMNGVTGTEYFIEFINGFDCDAERLRNAHISTCILGEGYRSW
                     GGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKG
                     AKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDKWASDLIKT
                     ISADS"
     gene            21017..21526
                     /locus_tag="ACJFEZ_000158"
     CDS             21017..21526
                     /locus_tag="ACJFEZ_000158"
                     /inference="COORDINATES: protein motif:HMM:NF016846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HGG0916311.1"
                     /translation="MKRMIGEVIQEGNIYIDGQGYLGVVRNLKLPDIEQEMIETKGVL
                     GANYSSGVLKPLEISFKLAVVDPVLYAAFFHTTFSEIKAPLLFRESVHKGGKNYGISA
                     EFLGEFISISESDHESGKEVEAEIKMAVHFYMQRRNNIPIITYDHKNTILMINGVDMM
                     SDVRSNLTL"
     gene            21630..21869
                     /locus_tag="ACJFEZ_000159"
     CDS             21630..21869
                     /locus_tag="ACJFEZ_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0098003 - viral tail assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HGG0916312.1"
                     /translation="MKEKIIKLENGEELKMREPNVRVLKNATNKSEKEMEQTINMIAT
                     LTNKQESEIEDLNLKDFKALQDALKDFLVEAGVIA"
     gene            complement(21981..22286)
                     /locus_tag="ACJFEZ_000160"
     CDS             complement(21981..22286)
                     /locus_tag="ACJFEZ_000160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916313.1"
                     /translation="MKVLKFINDDIISHIALLLTTLIPAFYISYQSASDGFFNTMAIF
                     IFSYFISIIITAILVMIMPPIALLLILPTWLIVISLDFILFAILKIYFLKNKTIKNS"
     gene            22328..24547
                     /locus_tag="ACJFEZ_000161"
     CDS             22328..24547
                     /locus_tag="ACJFEZ_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HGG0916314.1"
                     /translation="MENAGSIGIGVILGLAIKNASAVGKVVKDFSNLEKIAAKTKLGI
                     SGLQKELNTLKLNANLRAELKAQRKGLQDELFSLGNIISGGIVGKSIKVGIDFESAMA
                     DVKKVTDLSEGHTLEGLKQDILDLSKKLPMTAEEIANIVAEGGKLGLASKEALEFGKT
                     ATAMGVAFEMSANEAGEAIGGLMANLQTDVKGIKDLGDSINYLADKGSSDAKNIVNIV
                     SRIGGMGNLIGLQRENMAALAATLDEVKIPAEVAGTAISSMFTKLSTADALGAKAEEA
                     FSQLGLSGEFMKKALNRNSQEAINILLSRIKTLDKESQIGVITNIFGNDSGTIRAMAT
                     LVNGYDRYQELLKMTNSEEKKGSMDKELINKCETTASILKILGNNISALAIKFSDALL
                     PVVKLVASGFSFVIDIVDTLLSKFPVLSTIVATATTVFLLAKPAVLAYAIAKNYLKDC
                     TILLKSALIKTRIHLLAFRNSCILSNITLKAKTVTTTIYTTSLKALSFVLGGLNKVFK
                     AVAIGIRVLSMAMMSNPIGLILGGIAIVAGLIIANWDKVKSWFKSFIEWLKPVWEPIY
                     NVIKAVFDKCALVFTSFKDIIMSVASPLAEFLNSIWQGVGDFFYSIFGSLFDWFASKL
                     SWVGDMISSISGFIKDALDFVGLGDDKEVKISQNEQTKEKIFATNTYKDELQAKSINH
                     TPSFNNGNINVSVNGTFNIATKDGNFNMQEFANAIQKSVFDALRKQEQNKINTTIYG"
     gene            24551..25039
                     /locus_tag="ACJFEZ_000162"
     CDS             24551..25039
                     /locus_tag="ACJFEZ_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HGG0916315.1"
                     /translation="MSEYIEIKGIENFFKACDKLIDMDKHGQSIMAGAGESIRNSIID
                     SFKNERSIFNGKWKSLKPATIKQKIKDGKNKGILKRDGDLSNDLNWQSEPTKSGVKVF
                     NNMQSKSGFKYGLVHQYGSRKKNIPARSFLPIDNNNVLHQSIRSVIYKDTKDFIVKIA
                     KK"
     gene            25144..25959
                     /locus_tag="ACJFEZ_000163"
     CDS             25144..25959
                     /locus_tag="ACJFEZ_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HGG0916316.1"
                     /translation="MKINTDKFLKTSPLIKPTQTKLKAPFAWVGGKNYLAKEIIALMP
                     EHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLTSILHSMLVS
                     RKIFHMLKNKEIKPRNDLERAAFYFYLISTSFGSSMGQFAMSKQRTPKRLCRDFSLYT
                     KRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLL
                     KNIKGKFMLSYNDCELIRELYKDFNIKELKVRYSLNNNVLKRKESKELLIMNF"
     gene            26200..26400
                     /locus_tag="ACJFEZ_000164"
     CDS             26200..26400
                     /locus_tag="ACJFEZ_000164"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916317.1"
                     /translation="MIKETTDVFLNKIIEDEKLRNDFINKILKNSEFMEEFERMVDLH
                     INDKISILTDIDQEKSQIGGLE"
     gene            26397..26948
                     /locus_tag="ACJFEZ_000165"
     CDS             26397..26948
                     /locus_tag="ACJFEZ_000165"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HGG0916318.1"
                     /translation="MTYKEIKDKTPYEILDLLEMKEPPFNPFEIAQKLGINVVKDLDL
                     DKIDTEGQISVDEKGEPIIWINPLKNENRQRFTLAHELGHLANDILPSIENPIIDSYE
                     TLYRSNTYGGIETRANQFAARLLMPLRQIEDFIAECRKTTPDLKAAEAILLIASKFEV
                     SKQAVFHRLKNVGLIKQDYIYPF"
     gene            complement(26945..27229)
                     /locus_tag="ACJFEZ_000166"
     CDS             complement(26945..27229)
                     /locus_tag="ACJFEZ_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916319.1"
                     /translation="MSKVIVDIKKGFSKTFINAICNHNNELVLEYLKNGMSATKECMG
                     EEPMFYAITHNNFGAILLLLKYGAILDKNYLEECNKDFSKEALEFLASLL"
     gene            complement(27288..27917)
                     /locus_tag="ACJFEZ_000167"
     CDS             complement(27288..27917)
                     /locus_tag="ACJFEZ_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HGG0916320.1"
                     /translation="MQMQEVIEKLKDILASEGKCNLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGSICVIDRNKTFKNKSICVIN
                     TRDGLFIKQVLKQDDGVILHSLNPLYKDIFYKNGDFLLIGVVVGELSKM"
     gene            28212..28412
                     /locus_tag="ACJFEZ_000168"
     CDS             28212..28412
                     /locus_tag="ACJFEZ_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916321.1"
                     /translation="MGIVTSIRKYKNTLSKNVTILEGKKHFWDIKFKIKARVYPSFKQ
                     HLITFLGQSGHFGIFGIFYALD"
     gene            complement(28518..28796)
                     /locus_tag="ACJFEZ_000169"
                     /pseudo
     CDS             complement(28518..28796)
                     /locus_tag="ACJFEZ_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779491.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(28856..29297)
                     /locus_tag="ACJFEZ_000170"
                     /pseudo
     CDS             complement(28856..29297)
                     /locus_tag="ACJFEZ_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779492.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(29354..29656)
                     /locus_tag="ACJFEZ_000171"
     CDS             complement(29354..29656)
                     /locus_tag="ACJFEZ_000171"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916322.1"
                     /translation="MQNLHEILLQKKIKEIRFKAIASIVCGFLGIIPYLGFLFALASW
                     ILFFILLYDLKIYGGAKNLFKNLFIAAGIGFFGILISTSSLFVILEPCTQLQPDLF"
BASE COUNT        10551 a         4329 c         4602 g        10189 t
ORIGIN      
        1 aaacaaggga atggatgatg actgcagagg atattaaaag aatttttgaa aataaattaa
       61 atgagagaac aaaaaatcaa aaagtaatat ttactaagaa tgaaaatgaa agaccgcata
      121 atggtagtag taaagaaatt gcaaaatttc ttgcaagctt aaaagatgac gctattatga
      181 aagaagtagt agaaaatacc agcaatcaag ctatatcact tgtgagagaa tataagaatg
      241 tctagaatcg ctcaaccttt tttacatttt gatgccacaa agatgcattc tctcattttg
      301 ttttttcaaa aaacttttgc taaaagctat gaaaagcaat ctaaagatca agtttcgctt
      361 acaaaagaat ttgaagaaaa aattataaat gaaattttag aacagtatat tgattatgct
      421 attgcttacg aacttgtagt agaagatgtt tgtccttata aaattttagc atggtatgga
      481 tatttactgg ccgatgctct ttatattgaa caaaaagaac ttgctatttt atcaatatca
      541 acttccatta tatgtatgtt aaaattgtta gaaattgaaa gtgtaaaatt agaggatgca
      601 tttcataaaa aagctctaca aatggttgta tctgaactta aaggcaatca tatgaaatca
      661 gaagaatcta ataaaaaaca acatacaaaa ataggattag gaatgaatgg tttatatatg
      721 atgtttagaa cagcatcaat ttgtaaaaaa atcaactctc aaactctagc gtaattacat
      781 aagctgagtc attaaagcta tgactcacgc ttttaatact aaattcataa ttatccatat
      841 taatatcttt aatcttaagt tttccacctg ctcttatttc acgcccaata agctcacatc
      901 ttccatttaa tccacctttt tgaagctcat tgagttttgc ttgtgctttt ttaaaagctt
      961 cattatcatt ttttggttgt gagatttgca ttttatatat attctcccca cttcctactt
     1021 ttatgctttt tatctttgcc tcatttatat cttgccattc tgctattacg gcactatatt
     1081 catttctagc actttctgaa atttctaatg aaatacattc ctttaaagcg atttcaaata
     1141 agggtaaatt ttcattctta cttgtaatgt ttgcagcatt atcgccaatc ttaccatctt
     1201 ttggagtaat gattaaagta ttttctttta cacagcaaat aaaaccataa tcaaagcata
     1261 tactatataa gaattctaaa ttactttgat tattttgtaa aatacttact atattttgat
     1321 cctctccact tgttttgatt tttagattgt tttcatttgc gatttttctt gctatggtaa
     1381 aaagagtagt gttttcaaag cttcttgtct ttttctcttt tatattaacg ctgtcttttc
     1441 cactaaaatt aatagcactt gctctaactt cagtagtatt tgaagtatag tttttactca
     1501 ctacattcac actaaagctt ccacatttat aaagcttttc aaagccaagc caaagctcta
     1561 aactatctcc aaagagtggc ttagaataaa gcccaaaaac acttaaacct atctcatcac
     1621 tttcagattt ttctttatct tcataactaa tactaataag atttttagaa agtttttctg
     1681 tgatatcctc acctttggca ataagtttaa acttaggttt tcttaccata aagccttttc
     1741 cttgctttct ttaatctcaa tactaggtaa aaccacttta tctcctgttt ttaaaagagg
     1801 ttctagctta ggattggcta ataaaacttg attaaaatac aaaagtgtcc cataatgctt
     1861 atagactata ctatcaagcc tttcattatt tttggctata taaatcttac tcatcaaaat
     1921 ccctttctaa atccatacta aagctttgtg ctacaaagcc acttccatct acaaatgcac
     1981 ttctgttttc atttaaagct aaaatcacaa acttaccata atactttcca ttagcccctg
     2041 ttaagatata agatttttgt tcttttgcca tattctcaag tttatctaaa taagtatttc
     2101 tatctccttt taaaggtaag gttttgcctt gtattttaat cttttcactt tctttagaac
     2161 ttgcaaataa agcattatga ttattaagtc tattttgact ttgtatgtta tattctaagc
     2221 ttctttctaa attatcaaaa tttaaagctt taaactcaaa ttctcctaaa gctaaaacca
     2281 tttaaactcc tttttagttt catcaagcta aaattatctt aattagataa ggttgatacc
     2341 taaaatgtag tagtaggata gtccaaatta attggggtat gtattgtgag tgcaagtctc
     2401 accgccttat ctaatcttaa tatatgtctt attatcttta ttaatcgctt ctacttttcc
     2461 taatgtaact attgcattgg ttttaccaaa cttctttagc ttataatcag gggtaattac
     2521 aattttattg atacgactag catctttttt atctttaaag aaatacaata aagaattatt
     2581 tgcattatcc caataaactt cttttgcttc atctaaaact ttaacaattt gcttgatttc
     2641 atccacactt aaagcctgat tataacttgc ctttctttta ggacttgcgt gtaaaagatt
     2701 gtttttgctc agtgcaaagt ataagtcttc taagtctttt ttattaagtt tttctaaaaa
     2761 ctctttggtg cttttatcca ttttacctac ttgtataaaa ttaataggat atttttgatt
     2821 atctttaatg atgacttcat ccaccatatc atctaagctt ttttgccaaa tatagagttc
     2881 tttttctctt tgaaaacttt gtgcattctc ttttgtcttg gttgctaagc ttaaagcttc
     2941 taactttatg aagttttggc ttatttggct tatcttttct ttataaagtt tttcaagctt
     3001 ttctacgcct aagtttttat tgtagttaaa atttttatcc gccaaatcag ctggtgtttg
     3061 ctttgaaagc ttccagccat aaagctttaa ttcactttca cttacacctt gaatggagca
     3121 tttgcaccca taaccacaag gtgggcggtt gttaatccaa aaaggatcat ctcttcttaa
     3181 aatcatccca tgtaaggcta aatgctcttt tcttcgattg ccatgaagta agcttatcca
     3241 acgcacatat tctttattgc tttgcaaaat gttttcccac accgcttggg cttttgctat
     3301 tctcatattt gtttcaaaga ctttttttag tcttgaagtg cctattttga tatttttaac
     3361 ttctcctgtt ttagggttta caacctctac tttgtcccca aaccatcctt tagcttttaa
     3421 ttttggggta atttgctttt tccaagtttc aaatttatcc ccatttttta aagcctctat
     3481 taaagagttt tgaatatctt ttaaaagatt taaatcattt agctttgcaa tggtaaagac
     3541 tttattatgt gtttcatgca ttatttcatc ataatcaaag ctagtttggg gttttttgct
     3601 ttgtaaatat tcaattgcct tatttggctt accaaaaaac atttttaatc cccatagcct
     3661 aaaatacttg aattagctaa agcttgaaac ataaactctt ctaaaatatt gatagaaata
     3721 tcgctaaact ctttttgcaa gttttcaaaa agctcttcat aagaattaga atcgtttaaa
     3781 agctgattaa aggcttgttc tagcttttct ttaatttgct catcaatgac tttaaactct
     3841 ttactttcaa gtgctgcatc aattttatcc ataggctttt tttgtataaa ttttactttg
     3901 ttttcaaaga cttttttatc attttctaaa tctttaaagt cttttttctc taaagtctct
     3961 cttataagct caccctctac attataggtg cttttaatgt attcttcatc aaagcaaaag
     4021 cccatattaa aaagttttaa atccctttcg caaagctcac tttttggttc tgcttcgcta
     4081 aaaaactgca catagagttc atctttaaaa tgattgattt ctttgaaaaa cttaatggca
     4141 cgatttaaaa taaaaagaac gatttgtcca tcttgggcgg ctaaatcttt tcttatttga
     4201 ttatgtgact cagccgctgc taaagaacct ccgcttactt gagaacttaa attagctcct
     4261 aaaaccacgc ttcttatttg attatctaag taatctatta tttcattata atttgcctta
     4321 gcctttggct ggattaaatc aagctcttct tctttatcaa tgaccgcact atcgccattt
     4381 aacatttgat gaatttcaga agctagtgca tcaggatcgc tatctgtttt tgcaactgcc
     4441 caaggagaac caaatctttc taaaaactcc atccaaaact ttaaacttgc atttttaagc
     4501 tttactggaa aataaagctt tgttaataag gcatcgccat ttttaaataa aaaattagag
     4561 ccaaaaagtc cataaattgc ttttttatct tccacaattt cttcaaagcc attgccatta
     4621 taaactaact catcattttc attaaagcca aaatttctaa aatctctttg ttttaagatt
     4681 ggatagtaaa aaccatcttt taacttgtaa ttaacttcaa atacattaag cccataaaga
     4741 taggtttcta agatttgact taataaatca ggattgaaaa gatactcaag gctttctttt
     4801 attttttcgt tttcacaaac gatttgaagc tcttttgcta aaatcacact ccttcgtgat
     4861 tgatgagctt gagtaaagct tagatcttta aaaatcattt tttgatcgtt ctcactgatt
     4921 ttaagcacat ttaaatagct tgagtttata agagtgttta taagactatt gttttttaat
     4981 atcacttctc ttttggattt gatttctttt ttcatatttt tcctttaaaa acgccttatt
     5041 cttgaaacag agttaaaatg atgctttctt cttttaatgc tacttttagt tcttgctaat
     5101 aaaaatgctc ctgctaagct atcaggtgca tcatcatttt tcccttctgg aaattctaaa
     5161 agttgattta taagcatagt ttggctttta tgtaaaaaaa gctcttcatt ttcaaaagca
     5221 aggcttaaac tctcaatgcg ttcaaacttg ctaacgctat tatttttacc acgcaaaggc
     5281 aaaaaaactc cactttctaa gcttttttct tgtaaccatt tttttaagaa aaattgaccg
     5341 ccattagttt caatttcaat caagcgacat ttataaatct tttgaagatt aaaaatagtt
     5401 tttataatgc tttgtgcttt taaaattttt acgatgcttt ctgctacata aaaacccttt
     5461 gcacctttgc caataatggt aatcgcagta aagtcacttt ttgctttttc tcctgctggg
     5521 tcaatataca tataatactg attaatggcg ggtaaatcat cataaaaatt aatgccatca
     5581 aggctaaaga tttgattttc acttcttgga ttattgagtt gctctttatt aaaagctttt
     5641 agattttcag cccttaactt cattaaatct tctaagcttt tggcttcttt ccaaagaacc
     5701 ttagcccctt tatccattaa aactttattt tttaaataaa attgatgagc ggtattaaaa
     5761 tcagtatttc tataaagcgt ggcatactca tcccataaat caagcctttg tggaaattct
     5821 tcaatagagc gaaatacttt aggattccaa aaaccaagct ttaattttct agataacacg
     5881 ctatcattat gtaaaatggt tccaatataa agcacatcta aacttccatc tgcactccct
     5941 aaatttaaaa ccgcttcatc tacccaatct tctaatttat ccctttgatc tttactcctg
     6001 acattggtgt cgttttctaa atcatctaaa ataaccaaat caggtctttt aaccccatat
     6061 ctaaccccgc gcagtctttt tccactaccg aaagctttaa tctttacgcc attattactt
     6121 acaaactctc ctacgcgcca agtcttacca attcctacta cttcgggaaa atcaagcttt
     6181 aaatgcggat tatcttcaag ctctgcttta atagcttcaa gcattccttc cataagttct
     6241 accgcatctg aaatctctac tataaagctt ttataattaa acactaagca ccacaaagga
     6301 aagagttgtg aagtgtaggt ggatttacca tgagctcttg gtgcagctat ggcgtgtttt
     6361 tcacctttgc tttctttttt aagtgcgatt tttgtaaaaa cttcatttaa gtgcaaatgt
     6421 aagccgcatt ctcctttaat ggtaaaataa tgtggaaaat aagttcttgc aaaataatca
     6481 aaatccacac tcgctctttt aattcttttt tcttttaaag taggatctaa atggctttca
     6541 tgcaaaaatt gagtttttaa ttcatttttt agctcatcca tccattctaa aaagtctttt
     6601 ctttgcatag caccttttag ttcatttgga gtgttttcgt gcttttgttc gtttgagatt
     6661 aaaaactcat ctaattcttc tttggagaaa agcattaaat atccattgct aaaatttctt
     6721 tttctatcac tccgctttcc aaaagtgata caagttttgc cacacaatct ttatcatttt
     6781 ttaaatgact tatgataatt tcaaccactt ttttagcaac atttaaacga tagctacttg
     6841 gatcttctaa tcttgctact tttctcattt ttgaaaagct atcacctatc cttgcaatgg
     6901 cttcagtttt cttttctgca ttcatttttt catcagtatt tatattttca attgcacaaa
     6961 acatttgctc agtaaaactt tcatataatg aggcactttc tttatctttg atttttgaag
     7021 ttaaaagatt agctttttgc ttatcccaat cgccatcttt agctttgtaa tttctaatcg
     7081 ttttttcatt gcggtttaaa atttttgcaa ttttaaatat atcaaaacct gcaatataaa
     7141 gctcttttgc taaatctttt aattcattat tagccattta ttctccttaa atccattctt
     7201 tttcttttaa tcttaaacgc tctaacttta ttttgtggga taaagttatc tttatcaatt
     7261 tcagttggaa tttttttatt tgccattttt aaaagcaaat cattagccca ttctttaatt
     7321 tcttccaagc tttcttttgg aaaatcattg cggcgtttta attccatgat tgtaagcttt
     7381 acacaaatat cttttaaaag cggagttggg tttttaggta tctttataaa acttgcaata
     7441 taactttgag catcactaat ggcatcatca atcacttctt tatcacaaac accatcagcg
     7501 tttaaatcgc taagctctgc tatggcatga acgcttaatt ctttgattaa atccttttca
     7561 tctatcataa aaagatgtgt tttagttcct gtgataagtt cttcttctaa agtgtcttga
     7621 taattcattt taaaaacctt tttttaatgt ggttaaaata tggttaaaat cgtttaaaat
     7681 ctttttctaa tatcttttta gctttaaaaa cattttttgc ctttaaagct aaaattgtgc
     7741 gttttactct aaaacaagct taataagtcc atttggtctg gtgcaaactg gcatggctct
     7801 catttcgcct acaatttcaa ttccagcccc acgaggtaaa atttcaggct tagaaacaaa
     7861 cattaaactt ggtgcttttc ctaaagcatc agtatgattt gctcttgtat aataaatgcg
     7921 attagaatta tcctttggca caaccatacc ctcagtgcct tttaaaaatt caacgctttt
     7981 tccatttgta tttttatatt ttgcactata acggcgatat ttggtgccat acaaaattaa
     8041 ggacttatct ttctcatccc tacttgcaag atgattttta taaagatctt cgcttaatgc
     8101 caagttagaa atagccgcaa aaagttcatt tccacaaagc acttcataat cagcacttgt
     8161 tccaaattca tcaataattg ctgaatcaat cgcatcgcaa atgctggcta aagtcacact
     8221 cccatctttt ttaacactaa cagctttctt acttgcactt ccaaaatcaa aaagcacatt
     8281 tcctttgcca tctaaaatct tgccaaataa agcaccattt gccatatatt caagcgtagt
     8341 gttaaagctt tctttcattt ctttaaccaa aaccccaaga gctccactta agcttttagc
     8401 ctgagcttct tgcaatgcta aagaccttaa agaattaatc tcactcgcac tgattctttt
     8461 tgctaatgca aagcgtggta aaggtatatt taaaatataa gcgtctttag tattttctaa
     8521 agaatgttcc ccattatctg aaatgctatt taaaacaatt ccagcacctt ttataatttc
     8581 aacccttacg gtgctctcta aacttgggat tttatcctta aaaaaggtat cacttacaaa
     8641 gcgaggtgaa gctttggttt gattaataac ttcagttatt tttgtacttg aaaaaagttc
     8701 caaaagttgc tctaaatcca tttttactcc ttagtattaa taattaaatt ttgcataaaa
     8761 gcctttttaa ccgcacttac atgaacgcct tttaaattga tttctcctgc taataaaacc
     8821 ccataaactc cagaactaag agcgtgatct ttaagcattg ctaatttaac attttctttt
     8881 gcactaatat cttcatttgg acatttttta aagctttctc caaaatcttc gctgattaaa
     8941 agcgttccaa gagctaagct ttcattagtt tcaagatcta ttttcgcatt aattgaaaac
     9001 aaatctttat tgataaaact ttcaaggctt tttggcatag caattaaagg atcattgctt
     9061 aagctttttg atgtgacctt tgatggcatt tcttctcctt cttcatttat aaattcctta
     9121 gcggtttcat tttcactcac agcttcttca ttagctaggt tctcatcttc taaagacaaa
     9181 gctttaggta agtctccagt ttccaagtct tcattttcta ggttttgggt ttctttttta
     9241 gctttagcca tttttaatcc cctaacatca ttttcacaac atcaaactca ttagtttttg
     9301 ctgtgttttt atttgcaaaa acattatttt ttggaacttg cacttgatca ttctcggtat
     9361 ctaaaaagct tttaaagcct tctaaatcct tacaagcata cattagcgcc cattcttttt
     9421 gggaattagc aatttttccg ctatttaaag cattatcaac taaagagctt gctaagtttt
     9481 taacgctttc ttcgttttgc ttttttaaag cttcattttg taaagcgagt gaactgtttt
     9541 cattttttaa agctataatc tgagattcta gctctttgat tttttcatcc attttctctc
     9601 ctttgttttg atgaatatta tttttgttag caatgagttc gcctagctca tcaataaatg
     9661 gcgtattagt tagtgcgact gagtgaagct tagctcttac tagttctcca cttttattgt
     9721 cttttgaatt aaattcaaac acaggagata aatagcggta ttgcttattt gctatatatt
     9781 ttttagcctc ttcgttaaac tcagccttag ccattaaggc atcattttcc aaataaagct
     9841 ctttaatcca acctgcagca ggtgcttttt cattttttaa gctttgatgc tcatagtcaa
     9901 taaccaaatc aatctttttt tgattaaaat tatcaatcat tgagtttaaa tctttatcat
     9961 caaccttaaa cctgccatta ttatgccctt tccactcacc cttaattgcc acttttatgg
    10021 gcttatcatt gctaacttcg actaaatttt ctttattgat aaaaagcatt ttaaatcctt
    10081 aaaaaatcat cttttggtaa aaagctactt tgcaaagttc ttgcataaat gcttaaatag
    10141 ccatgatcgc ttattccttc gtaaaccttt ttaagatctt taagctctat tctaaaacca
    10201 ttgctaggtt ctgcatttaa aagcacttta tcaacagctt ctattgcatc aaataattta
    10261 tgcttagcat caattctgtg tttaggagct tttgattttg tatgggttaa aatataaagt
    10321 ttccaagttc ccactttatt ttctaaatct ttataacttt ctccttcaaa atcaagtaaa
    10381 agtgaagcat ctaaattatt aatacaactt gctatgtttt gggtgtcttc aaactcgcct
    10441 aaatacattc ttactttaaa atcttttaat agttctaaaa gctcattttc aaaactttta
    10501 agcatttttc atcctttaaa aattagcggc aattttaaaa tgagttcttt ttttaatcaa
    10561 gcaaattatt ttttcaaaga gttttagcac aaaatttttc tagtttttgg gtcagctttt
    10621 taactaaact tacgacattt aaaggagtga aaatgaaaaa taacccttat tttaaagaaa
    10681 gcgaatttaa atgtaaatgc ggcaaatgtg aattgcctca aaatgtacca agtgatgagc
    10741 ttatagacat tctttgtgaa atcagagaac attacaatgc tcctgttatt ataaatagtg
    10801 gatatcgctg caaagagcat aatgcagaga ttggtggagc ccctaaaagc caacacgcta
    10861 taggaagtgc agcagacttt gtggttaaag gagttaaaac agaagaagtt catcaatatg
    10921 ttttaaacac ctatggcgaa aggagcttgg gaattgccat aaagcataat tttaatgatc
    10981 cttatgctgg gtttgtacat ttagacacta gaggcaaaaa agcaagatgg acttatccat
    11041 aaggaaaaga ttgtgtttag ttttatttta tcaaggtttt taagtccttc aaaaatagct
    11101 ttttttgttc taattgctct ttgtggtttt ttatatttaa aaaacaatgc tttagcttta
    11161 gaaaatgaaa atctaaaact taaagctttg cattttaaca atgaaatcaa tgtttttaaa
    11221 gataaattag cccagcaaaa taaagctatt gataaattaa aacttgattt aaagcccaaa
    11281 gagactttaa aagaagtttt aaaagtggat aaggttttta ttaaagataa aagctgtgag
    11341 agtgaactta aagcttataa agaattattt aatattttag gagcaaaaaa gtgaatgata
    11401 aaatgagaat tttcctatta attatacctt ttgttttttt aagcgcttgt gcttctaaag
    11461 atattttgat taaaactgaa atcaaagaag ttaaagttcc tattaaatgc cctttaaaac
    11521 ttcctttaaa gcctttagac aaaaaagact tagaaagtgc taaaaaaatc tctaaatatt
    11581 acttagaagt tgaaaatata gccaagcttt gcacaggaga gaaagatgaa agaaaataat
    11641 aaaatgataa atcaaaaaag cattgcaaaa gatcttctta tagctctttt gttttcaact
    11701 tttgcattag ctttattata tttatttgaa atttttacaa ggaactagca atgaaattag
    11761 aagatatatt tgtatatatg gttttaatga tagtaagctt tatagctgga cttgtaggaa
    11821 ttgtaacaaa aaataaatta agcaaagctc ttaatttaaa aggtaaattt acactctttt
    11881 taaaaggtat gctaggttct atgtttgtgg catatctagt ttttgaaatt gtaaattatc
    11941 ttaattttgg cataaagctt agcgttgcag tgggtggttt tgcagcttat atggggacag
    12001 atgcattgct taaaattgag caacttgtag aaaagttaat taataaaaaa atggaaaaac
    12061 tataatgaac gaacttggca tcatttgcga cattaaagac aataaagcta aggttgctat
    12121 tggagatatg gtaacggatt ttttaagtgt ttttcaaagt ctagctaatt cttatgcggt
    12181 gagtttttct cctttaagaa taggagagca agtattagtc atacctgtgc gtggtgattt
    12241 aaattcaggt gtcattttgc gtgggcttta ccaagaaaaa catagagcaa aaaacacaga
    12301 tgaaaatact tttaatatag attttgaaga tggaacgcat ttagaataca actctaagag
    12361 tagcacttta aaacttgatg tggttaaaaa tataaatatc acttgtgtag ataaaaccac
    12421 ccataaccaa aacaacacct taaatactaa aaatcatact acaaacgcta ataccataac
    12481 gcttaatgct ccaagtatta atttaaatgg taatactcaa attgcaggag caatttctac
    12541 aagtggcgaa ggtggggcaa gtggtacttt tagcataaaa ggaaatttaa acttaatagg
    12601 caatttacaa gttagtggaa atataagcga tagcaaaggt gatttaacaa atcataccca
    12661 ttcttgtact tgtggtgcca cagcttcgcc aagataggaa aaactatgaa agaattattt
    12721 ttgcttttat tttcattagt cttttttatg ctcttttgta tgggggcatt ttatgctttt
    12781 ttaaacctaa acttttttat taaaagcatt tttataggct tttttatagc ttttatgttt
    12841 ttaggatttt ctcaaatact agaaaacatt tttgaatttt acaaaggttt aaaatgaatt
    12901 acatggtaag catcgaagaa agcatcaaag atattttaat cactcctttg ggttcaagag
    12961 taatgagacc agagtatggt tctttgcttt atacactcat agatagaaaa atcgatgatg
    13021 attttaaaat caaactgact agatatacag cggaggctat ttcaaagtgg gaaaaaagag
    13081 taaagctaaa aggcgtaaga cttaatgagt gtaaggataa taaattaaat attaccttgc
    13141 tttttgaaaa ttatggggat ttaacaatgg agctaggcaa atgagtgagc ttttaagtgc
    13201 taatgatagc tatttcaaac aaagcttttt aaaagatatt ccttatccaa aaatcataga
    13261 agagcttgat tttgaaaaga ttttaaagga tcttgaagag ctttttaaaa gctttttaaa
    13321 agaagatgta gaacttttag aatctgatcc ctttaaagct gtattagagg ctcttgctta
    13381 tagggaaatg ataattagag caagaattaa tgagagtata aaagcaacct atcttcatta
    13441 tgctagtgga agtgatttag ataatgtagt agttaatggg tatttaatag aaagattaaa
    13501 aggggttaaa cctagtgcca aagtagagtt taaattaaat tctttattaa cctatgatgt
    13561 aatcattcca aaaggtgcaa ttttttcaaa tgaaaaggca gatattgcta ccttaaaaga
    13621 agaggtggtg attaaaaaag gagagaataa agccagtggt gttttagagc ttgatgaatt
    13681 tatagaaagt aaagaaagaa aaactgagtt tttacaaact ccactgcctt ttgtagctaa
    13741 gattaaacaa ctagaatttt tcaaaggtgg agccagtgaa gaaagcgatg aggctttaag
    13801 agaaagagct ataatgagtg tgcatcgttt ttcaaccgca ggaagtgaaa aaggctatat
    13861 ctatcacgct ttaagcgcaa gtgcaaaagt agcttccata aaagctttaa acaatggagc
    13921 aggaaaagta agagttatca ttaaaagtga agatgaatta agcgttgatg tggttaaaga
    13981 gtatttaagt gcggatgagc gaagaccttt aactgatgaa gtcagcgttg agttagctaa
    14041 aaaaagagag tttatcgtag atgccaaact tttgctttta gagctttcta gggctaatga
    14101 aataagccag aagattaatg ctttgcaaaa ggactttgat ttaagtgtgg atttagcact
    14161 gggatttatt tataaatgct tacatcaaga cggagtttat aaaagcgaaa ttttaagcat
    14221 taaagaaaaa atcataaatg aagaagagca agaattaaaa gacttgccct tagaaaatat
    14281 aataatagct gatgatgagt ttgcaaccct tagcttttca cttagttatg aaaaggcggt
    14341 gctatgaata cactaatact aaaccaccat ccaaaacaaa gcaaagctat tgatttaagc
    14401 gcaaaggcaa gatttgaaga tttaaaaata gagagtatta caaatttagc tatgcgttgt
    14461 gatgaaagat tattgcccgt attggcaaat gcttatgatg taagcataga tggattagaa
    14521 gaaaaagaag ctagaaagct tatatctaaa gccttgcttt tagatagata caatggcaca
    14581 acttgggcta taaaagaagc tttaagtgct gtatttccaa cggcagtggt taaagagtgg
    14641 tttaattatg gtggaaagcc ttattttttc aaggttaaag taagcacaac taatgttagt
    14701 ttcgatgaaa gaacgcttaa tactttagaa agattaatta aagattttaa aaatgttaga
    14761 agcgttttag aggcaattga aatagagatt gaaagtaaga atgatagctt taatgcaagt
    14821 gcagagctta gcggggaagc tattgagatt ttaccttttc aaaccacttt tttagaaaat
    14881 gaaattaaaa gcactaaaaa tgcatttgga gtttttattt gtgagatttc aaaaactaat
    14941 attgatttta aaggagtgta ttaatggcaa aaagtgaata ctataccata ctaactaaaa
    15001 ttggcattgc taaatttatt gccgcaagag caagtggaaa cggggttaat ttaaaaagct
    15061 ttaaattaag ctctaaagtt attttaccca gtgaagaaat gcaaagcttg gaagaaattg
    15121 tctatgaggc taacataaat agcaagagcg tagatgaaaa caatccaaac tatattaatt
    15181 taatgtgtta tgtgccaagt gatattggtg gttttgaaat caatgccata ggcatttatg
    15241 atgaagtagg agatttgctt gcggtgggaa atttaccgcg tacttacaag cccatcctaa
    15301 aagaaggcag cgctaaagaa cttatgatta aaatagttat ggagctttct aatgcagaag
    15361 aagtaatctt aaagctagat cctagtgtga ttatggcaag tagagattat gtggatgcta
    15421 ttaaaattga gcttgaactc aaaattgaaa ccttgaaaga agaattaaaa gctttgatta
    15481 acaccaagga agacaagggt gtagcagcta atttggataa agctttaaaa acagaattaa
    15541 caaaactcat caataaaaag gaaaatacag gaaccgccgc ttctttagat gcacaattaa
    15601 gagatgaatt aatagcttta atcaataaaa aagaaaacat aggcgtagca aaacaattgg
    15661 tggatgcttt aagatctgaa cttacaaaag agattaaatc ttttattcca gagttaaggg
    15721 tagaaaaaag gatcataact gcaaaatatg attatgacag aaaaaaaaga caaacggttt
    15781 tggtttcttt gagcaatatt cctagtgaag ttaatatgag tacttattta agtaaatgtg
    15841 ctaactcagg ttttccagaa attgctccga attattctat gtcccaactt aaaggggaac
    15901 atttaattta ttatttaaac gatcaatatg ctgcttctta tgcgtatcaa gcaatttctt
    15961 acgctccgtc aggttctacc aataacaata attactaagg ataagaaatg ttttacaatt
    16021 tgagtcaaga agatttttta aaattagaag aaagcatagc taaaataatt aaaaagctag
    16081 aggttttaca gggtttagag gatataaaaa gcattaataa agcaaagcat ttaaatgaat
    16141 gcaaagagtc tttaaatcag tgcttagaga aaaaagacaa ggataaatat gattttttca
    16201 tttatgagat ctataatcta acttggggta ctaagccttt tgatgagatt gatgaaagtg
    16261 aaaaaatctc agcaaatctt aaagtggata aataccaaga aaacatccca agtcttaaag
    16321 aaatagctca aagcgtttta aaagaagaag tggatgattt aattaacgat catcctttaa
    16381 tgcttgaaaa attaaaagac tatgatgaat ttggagtgcc aagaaaaata agcataagac
    16441 aagccaaact cgcactttta gaagtaggac ttttggaaaa tgtagaaatt atgatgcaaa
    16501 gtgctgataa agccactcaa ataagctggg aatacgcgac tgaatttgaa agacaaaatg
    16561 agctcatttt attttttcaa caacaaacaa aactaagcga tgagtttgta gatgagcttt
    16621 ttaaaaaggc aaaggagtat taatgatagg aaagatttta acctttgtgc caaattcata
    16681 ttgtaatttt gcatgtagtt attgttatct tggaaagcta acagaaagaa aagaaaaaac
    16741 cacagatatg gcagaacaat ttaaaaaaat agccaaaaaa ttaaaagatg atggagtgat
    16801 tatcacagaa gttattttac acggagccga gctaagcgct agtccttatg agcatgttaa
    16861 ggagctttta aaagcaatag atgaatataa aaaagaaaat cattttttaa taagagttct
    16921 tagcaaagat agtaaaaaag gacatcatta tatacattta aaaactaatt tgtatttttt
    16981 ggatagattt tttgaacttt ttaaaaaata tgaagtaggc attagtgcta gtattgattt
    17041 gcctttgaga tttcacgaaa aatacagagt gctaaaaagt ggaaaaagca ctttagaaaa
    17101 gactttaaag atgattgagc ttttaagcgc ttatccttat tttaaacaaa tatcaaccac
    17161 gatgacaaaa gagcatttaa atgtagatga gtttataaga gatgtttata aactcgaaag
    17221 tttgggcttt gatatggcaa gtgattttta tattatgttc acttaccaaa gtgcaaatgc
    17281 acaaggtgac tttcaaatgc caagcgatga agatatgctt agtttctata aaaacttaag
    17341 agaaaaacta aaagatacaa aatattcttt tgcgttggaa catttttggt ttaaagaatt
    17401 tttgggtgga tactgcacta actgcaccaa ttgtggcgat aatttgctca ttcaaaaaaa
    17461 tggtgatgtt tatgtttgtc acagatccca agctttaaat gagttaagag caggaaatat
    17521 ttttaatgaa aattatgaga gtttgaaaat aagaaatatt accaatataa gaattttaga
    17581 aaattcttta aagcttcata aagattgcct agaatgtgat tattttcatc tttgtaaggc
    17641 ttcttgcacg attgaaagga atgatactaa acttggcaaa tcttacactt gtgctttgca
    17701 aaaggcaatt tataaaaata atgctgagtt ttttaaagca gataagactt tagctgaaat
    17761 ctctttggat gagtttttaa gacaaaatca aacaaacaat tataaaagct ttttaattcc
    17821 taatttaagc ttggaattta gagaaagcaa aaattcttta gaaaacatta taaatgatga
    17881 tgagattttg caaaagcttt atttaaaaga taatttttta atcagcgtaa atgatgaatt
    17941 agctttgctt gattttgaaa aggatgcttt atataaaagt tttaaaataa gttctaagga
    18001 taatatcaag cttttaataa aaaaagaagt gtttgattac agtacaaaag aaactttaag
    18061 caattttatt tatatgagtt tgcttggcgg agaggctaag gtttatggag atgaaaaaag
    18121 agaaaaaacc ttgcatattg aaacaaagca tttgtattta gaaaaactgc ttaatgaaag
    18181 cttggaatta gaaggatatt taatttatga tataagctct tttttaaaag aaaactctag
    18241 actttattcc ttaaatcata aaaactttat cttttttact acaaaggcat tgagggaata
    18301 tcattatgaa aaacaagcca aaaatgcttt ttatcatgca caaactatca acttgccgtt
    18361 tttaagattt gaatttacat gggaggataa aaatgactaa aacagaatta aaaagagtat
    18421 gcgtaaagcc atacgataaa gataaatttg aagttgtaga aaattatgag ttttctttgc
    18481 caaattacaa aggcattgtt ccaaaaggct ttaaaacaga tggtgcaagt atcccacgcc
    18541 ttttttggtc tttgtttccg ccatttaaaa gcgagtattt tagtgcttgc gtggtgcatg
    18601 attttttatg tgaaaaagca aactctagga gcgactataa aatagctgat ttagcattaa
    18661 aagaggcaat ggcttttctt ggatgttcaa agtttaaaat ctttgtattt tatcactcat
    18721 gcaatcttta tcatgtaata aagtgcatat ttaaatcaat aaaaaaggag ttaaaatgaa
    18781 agattatgga atttcttata ttccaaatgc caatcaaagc tcaaaagagc caagcgaacc
    18841 tatagttagt gataagctta acgctcaaaa agttaatgaa cttatagata aaaaactaaa
    18901 tctttttaaa gaagggcttg ctaatcaaga ggagcttaaa agtctcatta gagaaatttt
    18961 aaaagatcaa aatttccaaa atacaaacat aaaaatatca aaaactccac ctaactacaa
    19021 tacacaagct aaagtaggag aaatttgggc ggttttagaa agtaaaaagc aattatttat
    19081 ttgtattgct aatgataatg attttacaag ctgggttgat ttactaggag atggtagcaa
    19141 tgatattgcc cctaaagaaa aaatcatcat cacatttgat aatactacaa caggtggaca
    19201 atatgggggt tgtatgagtg atttaagact tggttttgaa aatggttttg ctactccaaa
    19261 taaagttcaa gatgagtatg aaaacgcaaa atttactatg actaaagatg gtaatggtct
    19321 taatagaagc gattttacta tagattctaa tcctattgca ggagaaaacc aaattttagg
    19381 aacgattaag acaagtggta tttatcaaga aacctatcac aaaatcgccc atgtgtttaa
    19441 aaaatataat ggtggttctg atgagtgttg cttatggtct agttcaggaa cgagagaggt
    19501 aagcatagaa cttgaaaata caccaatgcc taataagctt tttgctagag gtaatggata
    19561 ttatggtcaa acagaaatta ccaatgtaag agtaaaaaaa tccattttta taggtgagca
    19621 agaaattcaa agtgaagatt ttaatgttga aaagttagaa gctagttctg atacttatgg
    19681 agattatgcc tttttatttg aaatttctaa acaagatcaa attgttatga aaaaagagct
    19741 taatttaaat cctaaaaaaa caaaaaatac aaaaaatgta aagaaataag gagtgaataa
    19801 tggcagcaaa ttatggagtt aattttaata tcagtaatgg tgcagcaagt cctattaaag
    19861 tgcaaagtga tacgcctatt ggtattgctg gggctataaa aggcgcaagt aaagaaatga
    19921 tttacacaaa ggctggttat gaaagcgtgg ataactttcc aatctttgcc ttttcaaatg
    19981 taagcaaagc aaaagaattt gtaaacgatt taatcaaaga aaataactta caagatttta
    20041 gacttttaga tactttagaa tgtatcaatt tacaaaatgt ttttaatgtc ataattatca
    20101 gcttttttga agaaagcgag gaaagtgaaa acactttaac ccatattgtt aatgccatag
    20161 aagcttttaa aaaagcaaag cataaaacag gctttagtcc tgatttaatc attgctcctt
    20221 attactcaca tgaagcagga gtaaaggcta agcttgaaag tgtggcaagt tctatgaata
    20281 tcacagctat tgtggatctt tacgctacaa atgttggcga agctattaat acaatggagg
    20341 cttttagctc taaaagatta attgccactt ggccacaggt tcaaatctta aatacacaag
    20401 gaaaatacgc ttatgttcca caatctccta tcatcgcagg tttaatagcc catacagatg
    20461 gagataaaga atatggcttt agtgattctt actcaaatag agtgatgaat ggggttactg
    20521 gcacagagta ttttatagag tttatcaatg gctttgattg tgatgcagaa agattaagaa
    20581 atgctcacat ttcaacttgt attttaggtg aaggttatcg ctcttggggt ggggagacta
    20641 gccatgaaga tacgatttgg caagatttag ctcgtgtaag aacttttgat cgtatagccc
    20701 tagcaggaca aaaagcagct tttaaggcta ttgataaaaa agcaagtgaa ttatatttta
    20761 taaaaatcag cattgaagaa ttgctaagag atttaaaagg agctaaggtt ttaattggct
    20821 atgaggtaag ctgggatgaa gaaagaaaca cagatgccaa tgtgagtgct ggtaagtttt
    20881 atctaaatat aaaaatgatg aataatccaa tcgttaagca aatcacttta gagtttatct
    20941 actctgataa gtgggcaagt gatttgatta aaactattag tgcagatagt taataaattt
    21001 taaaaggaga ttaaaaatga aaagaatgat tggtgaagtt atacaagaag gtaacattta
    21061 catagatgga caaggttatc ttggggtagt tagaaattta aaattgcctg acatagaaca
    21121 agagatgatt gaaaccaaag gagtcttggg agcaaattat agcagcggtg ttttaaagcc
    21181 cttagaaatt agctttaaat tagccgttgt tgatccagtg ctttatgcgg ctttctttca
    21241 taccactttt agtgaaatta aagctccttt attatttaga gaaagcgttc ataaaggagg
    21301 aaaaaactat ggtattagtg ccgagttttt aggagagttt ataagcataa gtgaaagtga
    21361 tcatgaaagt ggaaaggaag tagaagctga aattaaaatg gcagttcatt tttatatgca
    21421 acgccgcaat aacattccta tcattaccta cgatcataaa aacactattt taatgataaa
    21481 tggtgtggat atgatgagtg atgtaagaag taatttaacc ctttaaacac taattaatcg
    21541 gtgtttaaaa gtaaaaaagt tgccttaggg ctttatatag caaagcaata gcataagctt
    21601 tgctttgttt taaaaaaaag gaaagaaaaa tgaaagaaaa aataatcaaa cttgaaaatg
    21661 gcgaagaatt aaaaatgaga gaaccaaatg tgcgtgtatt aaaaaacgct actaataaaa
    21721 gtgaaaaaga aatggagcaa actattaata tgatagctac acttactaat aagcaagaaa
    21781 gtgaaatcga agacttaaat cttaaggact ttaaagcttt acaggacgct cttaaagatt
    21841 ttttggtaga agcaggagtt atagcttaga agctgtagct cttataagtc atactttaca
    21901 ttggggatta aatgaagttt tagatttaag cttagatgag tttgaagaag ctttggaaat
    21961 ttcaaaagaa tttttaaagg ctaagagttt ttgattgttt tatttttcaa aaaataaatt
    22021 tttaaaatag caaaaagaat aaaatctaaa cttattacaa ttagccaagt gggtaaaata
    22081 agcaataaag caatgggtgg cataatcatc actaaaatag cagttatgat aatgcttata
    22141 aaataagaaa aaataaaaat agccattgta ttaaaaaaac catcacttgc actttgatag
    22201 cttatgtaaa aagcaggtat gagcgttgtt aataataagg caatatgtga aattatatca
    22261 tcgttaataa attttaaaac tttcatagta aagattttaa aatacaatcg cttaaaaagg
    22321 gttgaatatg gaaaatgctg gaagtattgg aattggtgtt attttaggac tagcgattaa
    22381 aaacgcaagt gccgttggca aggtagttaa agattttagc aatttagaaa aaatagcagc
    22441 aaaaactaaa ctcggcatta gtggattgca aaaagaatta aacactctta aactcaatgc
    22501 caatttaaga gcggaattaa aagctcaaag aaaaggtttg caagatgagc ttttttctct
    22561 aggaaatata ataagtggtg gtattgtagg gaaaagtata aaagttggta ttgattttga
    22621 aagtgctatg gctgatgtaa aaaaagtaac agatcttagt gaaggtcata cactagaagg
    22681 cttaaaacaa gatattttag atttatccaa aaaacttcct atgacagcag aagaaattgc
    22741 aaatatagtg gcagagggtg gaaaacttgg tcttgcctct aaagaagctt tggagtttgg
    22801 taaaactgct actgctatgg gtgttgcttt tgaaatgagt gccaatgaag caggagaagc
    22861 cataggcggt cttatggcaa accttcaaac cgatgttaaa ggcattaaag atttgggcga
    22921 tagcattaac tatttagctg ataaaggttc aagtgatgcc aaaaatatag taaatattgt
    22981 gagcagaatt ggaggaatgg gaaatcttat aggacttcaa agagaaaaca tggcagctct
    23041 tgctgctacg cttgacgaag taaagatccc agctgaagtt gcagggactg ctatttctag
    23101 catgtttact aaactttcaa ctgctgatgc tttaggagct aaggcagaag aagctttttc
    23161 acaattaggt cttagcgggg agtttatgaa aaaagcttta aatcgaaatt cgcaagaagc
    23221 aatcaatatt ttactttcac gaataaaaac gcttgataaa gagtctcaaa taggtgttat
    23281 tactaatatt tttggcaatg atagtggcac gattagagct atggcaactt tagttaatgg
    23341 ttatgatcgt tatcaagagc ttttaaagat gacaaattca gaagagaaga aaggttcaat
    23401 ggataaagag cttattaata agtgtgagac tacagcttct atattaaaaa ttttaggaaa
    23461 taatataagt gctttggcga ttaaattttc agatgcttta ctccctgtag ttaaattagt
    23521 cgcttcagga tttagctttg taattgatat agtagatacc ttactttcaa aatttccagt
    23581 gcttagtacc atcgtagcta cagctacaac agtttttttg ctcgccaaac ctgcagtctt
    23641 agcttatgct attgctaaaa actatcttaa agattgcacc attttactta aaagtgcttt
    23701 gattaaaaca agaatacatc ttttagcttt tcgtaattct tgtatattat ctaatattac
    23761 tttaaaagca aaaaccgtca caactactat ttacacaacc tcccttaaag ccttatcttt
    23821 tgttttaggt gggcttaata aagtttttaa agccgtagct attggtatta gagtgttaag
    23881 catggctatg atgagtaatc ccattggtct tattttaggg ggcattgcaa tagtggctgg
    23941 gcttattatt gcaaattggg ataaggttaa gtcttggttt aaatctttta tagaatggct
    24001 taaacctgtt tgggagccta tatacaatgt cattaaagca gtatttgata aatgtgccct
    24061 tgtatttaca agttttaaag atattattat gagtgttgct tctccattag ctgagttttt
    24121 aaattctatt tggcaaggtg ttggcgattt cttttatagt atttttggtt ctttatttga
    24181 ttggtttgct tctaagcttt cttgggtagg agatatgatt tcatccataa gtggctttat
    24241 aaaagatgct cttgattttg tagggcttgg ggatgataaa gaagttaaga taagccaaaa
    24301 cgaacaaacc aaagaaaaaa tctttgccac aaatacttat aaagatgaat tacaagcaaa
    24361 aagtataaac catactccaa gctttaataa tggcaatatc aatgtaagtg ttaatggcac
    24421 ttttaacata gcgactaaag atggcaattt taatatgcaa gaatttgcaa atgctataca
    24481 aaaaagtgta ttcgacgctt taagaaagca agaacaaaac aaaattaaca ctacaattta
    24541 tggataaaat atgagtgaat atatagagat taaagggatt gaaaactttt ttaaagcttg
    24601 tgataaatta atagatatgg ataaacacgg gcaaagcatt atggcaggtg ctggtgagag
    24661 tataagaaat agcattatag attcttttaa aaatgagcgc agcattttta atggaaaatg
    24721 gaaaagctta aaaccagcta ccataaagca aaaaataaaa gatggtaaga ataaaggaat
    24781 tttaaaaaga gatggggatt taagtaatga tttaaattgg caaagcgaac ctactaaaag
    24841 tggcgtaaaa gtctttaata atatgcagag caaaagtggt tttaaatatg gactcgttca
    24901 tcaatatggt agtagaaaga aaaatatacc tgcaagatct tttttgccta tagataataa
    24961 taatgtttta catcaaagca taagaagcgt gatttataaa gatactaaag attttattgt
    25021 aaagattgcc aagaaataat agcaaggaaa gcataagctc tcctttttct aaaaactagc
    25081 aaaagcatta tagctttatt tttaaaaact agttaattaa attttatttt gaaaggagtt
    25141 tgtatgaaaa tcaatacaga caaatttcta aaaactagcc cattaattaa acctacgcaa
    25201 actaaattaa aagctccatt tgcttgggta ggtggcaaaa actatttagc taaagaaatc
    25261 atcgctttaa tgcctgagca taaaagctat attgaagttt ttggaggagc tttaagtgtt
    25321 ttttatcaaa aaagtgcttc aaaaatagaa gtcatcaacg acattaacga cgagcttatt
    25381 aatttacatc tttgcataag aaataaacct caaagcttaa caagcatact tcattctatg
    25441 ttggtaagta gaaaaatatt ccatatgctt aaaaacaaag aaattaaacc aagaaatgac
    25501 ttagaaagag cagcttttta tttttatctt atcagtactt cttttggatc aagtatggga
    25561 caatttgcta tgagtaaaca aagaacacca aagagattat gtagggattt tagcttatat
    25621 acaaaaaggc ttaaaaatgc tagtattgaa aataaaagct ttgaatatat cttaaaagaa
    25681 tatgattata atgaagcttt gttttattta gatccgcctt atgtgggtac tgagaattat
    25741 tataaaaaca caggaggttt tgggctaaaa gaacatgaac ttttatgtaa tttgcttaaa
    25801 aatatcaagg gtaaatttat gctttcttat aatgattgtg agcttataag agagctttat
    25861 aaagatttta atattaagga attaaaagta aggtattctt taaataataa tgttttaaaa
    25921 agaaaagaaa gtaaagagct tttgattatg aatttttaaa agctaagaga gtaaaaatac
    25981 tctctttaat atttaatttt gtaaaaatat ggtaaagtac ctttaaaatt aaaaataatt
    26041 taaggattta ttatagaaaa caattacacc aattctgata ttattactat tgcaagttct
    26101 tatctaactt atggaagttt aattgttgct attgctactt tcttaacagc tgttattacc
    26161 atagggctta ctatatatta taaccgtgat aaacaaagat tgataaaaga aacaactgat
    26221 gtatttttga ataaaattat agaagatgag aaattacgca atgattttat aaataaaatt
    26281 ctaaaaaata gtgaatttat ggaagaattt gaaagaatgg tcgatttaca tataaatgat
    26341 aaaatatcta tattgacaga tattgatcaa gaaaaatcac aaataggagg tttggaatga
    26401 cttataaaga aataaaagat aaaacccctt atgaaatttt agatttattg gaaatgaaag
    26461 aaccaccatt caatccgttt gaaattgctc aaaaattagg tataaatgta gttaaagatc
    26521 ttgaccttga taaaattgac actgaaggtc aaattagtgt agatgaaaaa ggtgaaccta
    26581 ttatttggat aaatccgctt aaaaatgaaa atagacagcg ttttacattg gcacatgaat
    26641 tagggcattt agctaatgat attttaccta gcatagaaaa tcctattatt gatagttatg
    26701 aaacccttta tagaagcaat acatatggtg gaatagaaac tagagctaat caatttgcgg
    26761 caagactact tatgcctctt cgacaaatag aagattttat agcagaatgc agaaaaacaa
    26821 cacctgattt aaaggcggca gaagcaatat tacttattgc ttcaaaattc gaagtttcaa
    26881 aacaagctgt ttttcacaga cttaaaaatg taggtctgat aaaacaagat tatatatatc
    26941 ctttttagag caaagaggct aaaaattcta aagcttcttt gctaaaatct ttattgcatt
    27001 cttctaggta atttttatct aaaatagcac cgtattttaa taaaagcaaa atcgctccaa
    27061 aattattatg agttattgca taaaacatag gttcttcgcc catgcattct ttagttgcac
    27121 tcataccatt tttaagatat tctaaaacaa gttcattgtt atggttgcaa attgcgttta
    27181 taaaagtctt gctaaaacct tttttgatat ctactattac tttactcatc ttatctcctt
    27241 ttgttttgat aagacaagat tagcttggct tagcttattg tgtgctgtta catcttagaa
    27301 agttctccaa ctactacacc aattagcaaa aaatctccat ttttataaaa tatatcttta
    27361 tataaaggat ttaaagagtg taaaatcact ccatcatctt gttttaaaac ttgttttata
    27421 aaaagtccat ctctagtatt aatcacacaa atgcttttat tcttaaaagt tttatttcta
    27481 tctattacac aaattgaacc atcttttatt attggttcca tactctctcc gtaacaagta
    27541 ataaactcac attctttact tccaaaaaag tttaaaacct tttcgtcgat gattaaatca
    27601 gagctatcaa tcaaatcatt tataccacct ccgcctaaac ttgcatttgt tttataaagc
    27661 tttaaaattt tatacttgtt ttcacattct aattgatctt ttggggaact tccatagaag
    27721 aaataattaa tgcttatatt tctttgattt aaaaagttta agatttgtgg atatggaata
    27781 gagtttctaa atttcatgga attaaaagta tcaggatgaa ttcctagttc tttggctata
    27841 tcttttgttt ttaaattaca cttaccttca cttgcaagta tatcttttaa cttctcaatc
    27901 acttcttgca tttgcatgtt aaatcctttg attttaattt caaagaaatt taacaaaaaa
    27961 ttacaaaagg caattaaaag cttttgattt gaaagatttt taatataaga gcttgaaaaa
    28021 tctaacttca agctctctaa attgatattt aaaaacatct tactaagcta tttttttaac
    28081 aagatttcat aaaaaattgc ttcattactt tttaagtttt ctatgtaact atcttccaaa
    28141 gcttaatgcc atagatagtt acatgctatt tttatataaa aagtggttaa actatgatta
    28201 tatagtgttt tatggggata gttacatcaa taagaaaata taaaaatact ttaagcaaaa
    28261 atgtaactat cctagagggt aaaaaacact tttgggatat aaaatttaaa atcaaagctc
    28321 gtgtttatcc atcttttaaa cagcatttaa tcactttttt gggacaaagc ggacattttg
    28381 ggatatttgg gatattttac gctttagatt aggaaagata aaaagtcatt tttgtaagct
    28441 ttaaaatcct attatttggg atttttgcta aaattattta gggatagtta catgttcttt
    28501 ttaaaatacc ccttacatct tatactatct aatagccaaa taaaagcaaa aaataactta
    28561 cttacaattt cactacaaac aaaaaatgcg aaaacaagat agaaaagttt ttcttttgta
    28621 gcttgaacta aagttttaaa gaagaaaaag gcgatgataa tatagactac actcataatt
    28681 tcattcaaaa taaaattttc aataaaaaca ccttcgccca ttattaattt taaaataaag
    28741 tgcaaattcc atttaagaac aatcaaagcc tgccacacaa agaaataaat aagcatttta
    28801 taggttttta actttttaca aaataaaaac acacttaata aagctaaaaa tgttgctata
    28861 taaaataaaa catatcgaat ataaaaaaga ttgtgtatta acctaccata ggtctcaaaa
    28921 tcaaaaaatt ctctccatgt ggattgaaat gtaattattt gagtaaaatt tgaaagtccg
    28981 agaataacag aaaacaaaac caaagacaaa accattgtaa ttttaatcca ttttaaatca
    29041 aaatcgaaaa taactttttg tgttgggatt gtaaattttt ctttatttga aatttcttgc
    29101 ttatcaaatt ttttaaattc aacccacgct aaaatccaaa aaaccaaact tgctagcaaa
    29161 aacaccaaac ctataccgat aatcaaagta agaagcccta aataataggt attaaaagca
    29221 taaatgaaat acttctgttt tgttactcta gcaatttcat agtaaaaagc tttcaaaaaa
    29281 ggaaaaatca aagccaaagt tgggatatat aatattaaaa aaaacagtaa tggctaaaaa
    29341 ggtattatct ccatcaaaat aaatccggct gtaactgagt acaaggttct aaaatcacaa
    29401 ataaagaact tgtgctaata agaataccaa aaaatccaat ccctgcagca ataaagagat
    29461 ttttaaataa atttttagca ccgccataga tttttaaatc ataaagcaag ataaaaaaca
    29521 aaatccaact cgcaagagca aataaaaatc caagataagg aatgatacct aaaaatccac
    29581 aaacaatact tgctatagct ttaaagcgaa tttcttttat ctttttttga agtaaaattt
    29641 catgtaaatt ttgcattgaa attccttaaa a
//
LOCUS       DBBXRO010000006        29605 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.006, whole genome shotgun sequence.
ACCESSION   DBBXRO010000006 DBBXRO010000000
VERSION     DBBXRO010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29605
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.006"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            2..757
                     /gene="proB"
                     /locus_tag="ACJFEZ_000172"
     CDS             2..757
                     /gene="proB"
                     /locus_tag="ACJFEZ_000172"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HGG0916323.1"
                     /translation="MQRIVVKVGSHVISDENLLNLKRFENLVAFLTKLMQKYEVILVT
                     SAAISAGCTKLHIDRKNLINKQVLAAIGQPFLISVYNEFLAKFGKMGGQILLTGKDFD
                     SRKATKHAKNAIDAMIDLGILPIINENDATAIEEIVFGDNDSLSAYATHFFEADLLVI
                     LSDIDGFYDKNPSEFSDAKRLERVEFIKEEWLNVSVKTGSEHGTGGIVTKLKAAKFLL
                     ENHKKMFLASGFDLSVAKAFLLENKQIGGTLFE"
     gene            836..970
                     /locus_tag="ACJFEZ_000173"
     CDS             836..970
                     /locus_tag="ACJFEZ_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916324.1"
                     /translation="MKKSVKILLSVATFAYDPYTCSLQNLINPGSCNPNLVPNDEYAC
                     "
     gene            1024..1751
                     /locus_tag="ACJFEZ_000174"
                     /pseudo
     CDS             1024..1751
                     /locus_tag="ACJFEZ_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821892.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2200..3117
                     /gene="fmt"
                     /locus_tag="ACJFEZ_000175"
     CDS             2200..3117
                     /gene="fmt"
                     /locus_tag="ACJFEZ_000175"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HGG0916325.1"
                     /translation="MKKIIFMGTPSYATCILKALLEDENFELLALFTQPDKAVGRKQI
                     LTPSDTKAFLLQKAPQIPIFTPNSLKDESVIEQICALKPDFIVVAAYGKILPKAILDI
                     APCINLHASLLPKYRGASPIQSAILNADEKSGVCTMLMEEGLDTGAVLESVECDIRDK
                     NVNEVFEILANLAAKLTLSTLLNYEKLLPKKQDESLATHCKKIKKEDGLVSLDNAREI
                     YQKYLAFTPWPGVFLENGLKFIELELVDELKQNAKMGEILELEKESFLLACKQGILRI
                     KKLQESGKKALDGRTYLNGKRLKSADSLC"
     gene            3080..3733
                     /locus_tag="ACJFEZ_000176"
     CDS             3080..3733
                     /locus_tag="ACJFEZ_000176"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HGG0916326.1"
                     /translation="MEKGLKVQIACVESIDSTHLFLCEQIRSGKINENFALYALNQTK
                     GVGSRENSWQSSSGNLHLSFCIKEGDLPSDLPLVSVSIYFAYLLKEILQEKGSRIWLK
                     WPNDLYLDDKKVGGVISTKISDFIVGGMGLNLKFAPHDAALCDVEILLKDLIQEFLQR
                     LEKKFLWKHIFSKYMLEFEKSRQFSVHYEGKVFSLENAFLYEDGSILLGDKRVYSLR"
     gene            3730..4515
                     /locus_tag="ACJFEZ_000177"
     CDS             3730..4515
                     /locus_tag="ACJFEZ_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0916327.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMILKNQIQEVLDEYDFIIIDSPPALGSITINAFVASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINPKLKVRGFLPTMYSSQNNLSKDVVEDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSLAYQNLAYSILG"
     gene            4520..5356
                     /locus_tag="ACJFEZ_000178"
     CDS             4520..5356
                     /locus_tag="ACJFEZ_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HGG0916328.1"
                     /translation="MGLNKNRGLSTLMGDVGEVYSRELGLDKNQVSLVEISKITPNPF
                     QPRKTFDEAALNELANSIKEHGLIQPIIVLKKNDSFILVAGERRLRATQILGKENILA
                     FVSDSDESKLRELALIENIQRENLNPIELANSYKDLIEVYNITQENLAELIHKSRTQI
                     TNTLRLLNLDPKTQDLIASGKISQGHAKVLVGLDKEDEKVLVDSILGQKLSVRDTERL
                     VQKVKNKENTEDVEFENSMQSLKQTLNKLGFASKNNKKELIIRLDNIEKIKKLTEILN
                     KF"
     gene            5415..5840
                     /locus_tag="ACJFEZ_000179"
     CDS             5415..5840
                     /locus_tag="ACJFEZ_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FoF1 ATP synthase subunit B'"
                     /protein_id="HGG0916329.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNTMLYRPLLKFMDERNDSIK
                     NDENKVKENSQEMLGANDEVEAIHVSTREEIHKIKQNAINAAKEEAQQAIKAKKEELE
                     RKMANFYTELVSQKKELQDHLSAHLPDLKQALQNNIKQH"
     gene            5853..6365
                     /locus_tag="ACJFEZ_000180"
     CDS             5853..6365
                     /locus_tag="ACJFEZ_000180"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HGG0916330.1"
                     /translation="MKKLFYFIFLLPLCAFGASNGSGEYDIVPRTINFLIFVAILYYF
                     VANPFKAFYKNRILRISLKLDEIQKKLLESKAKKLDTMKKLEEAKANAAAALVVAKKE
                     AEVLAQKIKEETQNELALLQKHFEEQKDYEFRKMEKEVVSLTLKEIFEDSNIALKQNE
                     IIDIMMKKVS"
     gene            6365..6886
                     /locus_tag="ACJFEZ_000181"
     CDS             6365..6886
                     /locus_tag="ACJFEZ_000181"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HGG0916331.1"
                     /translation="MNDLIAKRYAKAIALRADISEFYDNLSVLSSAFASPKFKNIIES
                     NQIQKEKKLEFVISLIEKASPSFNNFLKLLAENSRLSCIPQIAKELERQKSFKENIFL
                     GTVYSKEVLSEDNIKELENRLSTKFGVKIKLQNKVGLNEGVKISLEELGYEISFSMKA
                     LQNKMSEYILKII"
     gene            6899..8404
                     /gene="atpA"
                     /locus_tag="ACJFEZ_000182"
     CDS             6899..8404
                     /gene="atpA"
                     /locus_tag="ACJFEZ_000182"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HGG0916332.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFDNGDKGMALNLEESSVGIVILGKGEGLKEGTSVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINSNEFRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQKGQGVVCIYVAIGQKQSTVAQVVKRLEEHGAM
                     DYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGYLDDVAV
                     SKIREFEDGIYPFIEAKYPDLFEQIRSKKALDAELEEKLAKAINEFKANHL"
     gene            8414..9298
                     /gene="atpG"
                     /locus_tag="ACJFEZ_000183"
     CDS             8414..9298
                     /gene="atpG"
                     /locus_tag="ACJFEZ_000183"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HGG0916333.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSRV
                     YAQKIDEILSEISFQVNKIVHNEEDSRFVLFHKKNQIKNVDLIFITADKGLCGGFNIK
                     TLKAVSELLKEYEEKNINVRLRAIGKTGIEYFNFQKIELLEKYLGLSSSPDYDKACSV
                     IQAAVDDYLNGITDEVVLVHNGYKNMITQELKISHLIPVEPKQIEGNSNSLLELEPED
                     TDLLGDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            9325..10722
                     /gene="atpD"
                     /locus_tag="ACJFEZ_000184"
     CDS             9325..10722
                     /gene="atpD"
                     /locus_tag="ACJFEZ_000184"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HGG0916334.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKQKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRSIAEKGI
                     YPAVDPLDSTSRMLDPQIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     IVERARKIEKFLSQPFFVAEVFTGSPGKYISLEETIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            10726..11115
                     /gene="atpC"
                     /locus_tag="ACJFEZ_000185"
     CDS             10726..11115
                     /gene="atpC"
                     /locus_tag="ACJFEZ_000185"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit epsilon"
                     /protein_id="HGG0916335.1"
                     /translation="MDNLISFEIVTPMGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKISVLAKGAVWISGSSESEIEKNLESA
                     KELIKSMSSDNTALAATFSKLDNAKVR"
     gene            11116..11670
                     /locus_tag="ACJFEZ_000186"
     CDS             11116..11670
                     /locus_tag="ACJFEZ_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HGG0916336.1"
                     /translation="MNFEAIFQFFGSSSIITYIVLAWLSLYFILSFFILFSRVTYLAA
                     WKNKEKESLEALLLGEKDLSRTRSILRKCTDTSLSHLEIYKNLASRRASNGLTWLSIV
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSNK"
     gene            11681..12070
                     /locus_tag="ACJFEZ_000187"
     CDS             11681..12070
                     /locus_tag="ACJFEZ_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HGG0916337.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKSTSAPSVKSLIVSINAKKEIFLNQEKYSFVSFADNLAQKKAQLNTDEPVFIRADK
                     SLKYDDVIFVLKSIKNLGFNKVALQTE"
     gene            12074..12850
                     /locus_tag="ACJFEZ_000188"
     CDS             12074..12850
                     /locus_tag="ACJFEZ_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HGG0916338.1"
                     /translation="MKEYGLGKINSFLLAVAVYVFIIILIFFRLVTHIQPAIQYTDIQ
                     DSFIDIELMEPSKKVVNEQSAPKDIQKPAQELDIEKLFAQTTNKAVKTEDVDQKASNF
                     NELFGSIKEIQEEKTTKIQSSAKSETTSSSKTQASELVKQLNDSLLEEESINQGESIK
                     NQKTGIYDEFLGKVVRTITQRWRQYHPNSENISVKVKIFIDENGNFGYTSVEKSGNSL
                     YDAKVAEFLENQKGKFIAYPPQNKSISITMNLKDEAQIQK"
     gene            12864..14075
                     /gene="tolB"
                     /locus_tag="ACJFEZ_000189"
     CDS             12864..14075
                     /gene="tolB"
                     /locus_tag="ACJFEZ_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HGG0916339.1"
                     /translation="MKKIVTVFLIFLGILWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     INLKRSFYNIIVNDLKVSSNFEVVSDASSEAANYTFEYDLSKNGNALNLHVKIKAGGL
                     EKSSQTYALNGVEQYPFLAHKSVKASVNALGLAPVEWMDHKILIARNSSSKKSQIIMA
                     DYTLTYQKVIIDGGLNLFPKWGNKEQSIFYYTAYDHDRPTLYRYDLRTNKASKILASG
                     GMVVASDVSLDGSKLLVTMAPKDQPDVYLYDLNSKNLTQLTNYSGIDVNGNFIGVDDS
                     KFVFVSDRLGYPNIFIQNLNNGSAEQAVFHGKNNSAVSTYKDFLVYSSREPNQVGVFN
                     IYLMSINSTGIRQFTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFP
                     LKVGKIQSIDW"
     gene            14152..14649
                     /gene="pal"
                     /locus_tag="ACJFEZ_000190"
     CDS             14152..14649
                     /gene="pal"
                     /locus_tag="ACJFEZ_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HGG0916340.1"
                     /translation="MKKILFSSIAAFALVISGCSTKSTSVSGDTSVDSNRGTGGSDGW
                     DIDSKISQLNDTLGKVYFDFDKFNIRPDMQNVVNTNANIFNNEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAQGVNSDRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            14653..15606
                     /locus_tag="ACJFEZ_000191"
     CDS             14653..15606
                     /locus_tag="ACJFEZ_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0916341.1"
                     /translation="MKKIFSVALIGATLLYAESSAFGAGDLTSNSPYGLTSSEKLLKE
                     KLDTLSNNNVQANSRINEIEQRVEGLQSTLEGINSQYAKSNSRLTQLETRFEAMENNL
                     STELQNLKAYVEESRKIQDANNKQIKKILTELSSLVDSINANYVSKDDLNSTNLSIKN
                     TVVVPLSIDDKNITSSDENNASVAPVQEKEVKQIDDSWKKKKNNEILDLAIKDLNNNS
                     YENSKIKLNYLISKQYKPARANFWLGEIEYKQKKYNNAIAYYKKSSALSTKGDYFPKL
                     LYHTAISLDKIGDPKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            15622..16194
                     /locus_tag="ACJFEZ_000192"
     CDS             15622..16194
                     /locus_tag="ACJFEZ_000192"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HGG0916342.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYAQPISFILGKGQILE
                     ALEEEVMKLDCPSNADVVIKKDKGLGEYDENAVQVLPKEQFAGIDLKIGMELFGEGEN
                     GETVRVTVKEISDNDVTIDYNHPYAGRDLLFSLNIVDARAASEDELLTGIIAGSHSCG
                     CGSGHGHGHDHHGHGGGGCCGGGGGGCGCH"
     gene            16196..17116
                     /gene="fabD"
                     /locus_tag="ACJFEZ_000193"
     CDS             16196..17116
                     /gene="fabD"
                     /locus_tag="ACJFEZ_000193"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HGG0916343.1"
                     /translation="MNAVFIFPGQGSQSLGMGKDFYENSKTAKELLENASDFCKIDFK
                     NLLFNENDDLNKSEFTQPAILLNSLMAYSALSELKPDIKAKFALGHSLGEFSALAING
                     AFSFLEATMLVHKRGLFMQEDCAKVEAGMMVILGLDDKKVEELCQKARDEDKKIFAAN
                     YNCDGQIVVAGLKPDLASYEGTFKEAGAKRAMLLNMSVASHCPLLENASNKLCIELEK
                     ILEPTFKAVISNATAKAYTSKQEALELLKTQLVAPVLYKQSIKACENEADCFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIEEFLKVI"
     gene            17117..17803
                     /gene="pfs"
                     /locus_tag="ACJFEZ_000194"
     CDS             17117..17803
                     /gene="pfs"
                     /locus_tag="ACJFEZ_000194"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HGG0916344.1"
                     /translation="MKIAILGAMSEEITPLLETLKNYTKIEHANNTYYFANYKNHELI
                     LAYSKIGKVNSTLSASVMIEKFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYDLDI
                     TAFGHPLGFVPGNEIFIKTDDKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKAK
                     IREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKISA
                     NFVLKMCEKL"
     gene            17800..18561
                     /locus_tag="ACJFEZ_000195"
     CDS             17800..18561
                     /locus_tag="ACJFEZ_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis TtcA family
                     protein"
                     /protein_id="HGG0916345.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LKRMQAHAPFKFELEAATLSYGMGEDYSGLHAHCEEHGIKHSVIDSNIYEVSGDTIRQ
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLERTKI"
     gene            18558..19079
                     /locus_tag="ACJFEZ_000196"
     CDS             18558..19079
                     /locus_tag="ACJFEZ_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HGG0916346.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEDYLKSKEGLNLPIEHCIKDSSGWQMPKDFTPFLQKAHKVFHKNTFGSL
                     EFANFIAKSEYEEIHFAGLVSHICVFCNIILAFSAKPNSRLILHQNLSASFDENLEKS
                     AFDLLRAYGIEIL"
     gene            19079..19693
                     /gene="recO"
                     /locus_tag="ACJFEZ_000197"
     CDS             19079..19693
                     /gene="recO"
                     /locus_tag="ACJFEZ_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HGG0916347.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKELIKAYRFYGLRHSSILNGY
                     KIDFALDENPSFLPRLKDVLHLGFVWIMDREKMLIWQEFIRLLYHHLKDAQVLESFYF
                     ELLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHQEFRCFACDESIENPITLIRAFLP
                     SHHTCALGYAFEKQKLKNFYESKNCAIFGDEEIGNLYQLIKEGL"
     gene            19690..20097
                     /gene="ybeY"
                     /locus_tag="ACJFEZ_000198"
     CDS             19690..20097
                     /gene="ybeY"
                     /locus_tag="ACJFEZ_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HGG0916348.1"
                     /translation="MILSDEKCEFLEPIASFLSSKDVELVFVESKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINIDLAKQKAKELGHSFEEEVSLLFIHAMLHLLGF
                     DHEVDNGEMREKEKELIEHFNLPKSLIIRTLED"
     gene            20220..20912
                     /locus_tag="ACJFEZ_000199"
     CDS             20220..20912
                     /locus_tag="ACJFEZ_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916349.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELAKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDKNAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKTLQENLEENKEKP
                     FKPIQAESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMKFSDDDAGEFNKILS
                     LNSAPKSVDIKA"
     gene            20948..22186
                     /locus_tag="ACJFEZ_000200"
     CDS             20948..22186
                     /locus_tag="ACJFEZ_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HGG0916350.1"
                     /translation="MIGINSTFNNSFVNLNIKNNNNSSLNSNTSNANVKNLQDTQDTT
                     KTSNKVLGYEVDKDGFFTSEFNKAAGIPKDYKIYAKGAENFVNYITNLNFKSFTNIDI
                     AKSLGNAYKVFSQLIDEPSGNFTTEDLSKIPLGFSYNKKSFQVTNIYYSEKDFESALS
                     FEDDLKIYQNPKQLTLSFPSWKEKAPADYIKKNSDIFDPSSHINIGASFYKNDNGTIS
                     KGGVLMAFFAGMSGQNPLIEGETTIEGKLLGYDKNMSQSQVEDLNEFINQNPIEWSIT
                     GDVFADSVYITKLRNTITDIDEFKKQWLEMKAKSDEMGEIYKAEIAKQNREIALAQKN
                     SNKEKDKPFEPIQAESKSETYKDDNKMNELLKKLLETKFGTSDELELLFGMKFGDDNA
                     GEFNKILSLNSTPKSIDIKA"
     gene            complement(22217..23134)
                     /locus_tag="ACJFEZ_000201"
     CDS             complement(22217..23134)
                     /locus_tag="ACJFEZ_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HGG0916351.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKSLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIANAKASVKIPVIANGDINAQNAKEVYEITKCDGLM
                     IGRASVGNPWIFYEIKSGKNVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDSVNRIDNVEEMRKKIEEFF"
     gene            complement(23131..24117)
                     /locus_tag="ACJFEZ_000202"
     CDS             complement(23131..24117)
                     /locus_tag="ACJFEZ_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916352.1"
                     /translation="MKIRLFFIASFIYIALIFALAWYLELGNYTLNFNTYSFELPIMI
                     WLILPLIPLVFFAIIHMGFYYFLLTLKFKHFFKDSTKFENFTRDLLLEKESNISFQTK
                     EFRQVAQLAKTLKTHEKIPNANKINEILDLIDGIKKEEYFNLNKFKLENNNILFLENE
                     KNHIKNDINYAYSKIKNLSQTQDEFQDLAFESLIKKGTYEQIKNIKITKKPCHILTLI
                     KRFKEGNLELNAAEYEVLLSHNILSEKDYLDIAKLSIKLLNPDAVIGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(24114..24467)
                     /gene="dksA"
                     /locus_tag="ACJFEZ_000203"
     CDS             complement(24114..24467)
                     /gene="dksA"
                     /locus_tag="ACJFEZ_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HGG0916353.1"
                     /translation="MKKNEIQVFKTILENRKKTILENLQSNSKEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISANLKQELEEIEDSLEKIKDGTYGICESCDEEIAIERLKIKPHA
                     KYCIVCRENLEKGEL"
     gene            complement(24479..24928)
                     /locus_tag="ACJFEZ_000204"
     CDS             complement(24479..24928)
                     /locus_tag="ACJFEZ_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HGG0916354.1"
                     /translation="MQVNIFHIQKNDEFKIWGEKYAKLISKFADLKEHNLFNKKIAAA
                     QNLNAQAAKLSYEEAFAPYTKGFCIVLDERGKELTSIEFAKLIADKNNLNFFIGGAYG
                     LRDEFSQSLDFRLSLSKLTLAHQFVKILLLEQIYRAFCINSNHPYHK"
     gene            complement(24930..25772)
                     /gene="accD"
                     /locus_tag="ACJFEZ_000205"
     CDS             complement(24930..25772)
                     /gene="accD"
                     /locus_tag="ACJFEZ_000205"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HGG0916355.1"
                     /translation="MNFADIFSKIRRQQPSTKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCSYHMRISPMDRIKLLSDENTFVEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSAVISGECLIDGLKIQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITDKTPVVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISVLTDPTMGGVSASFAWLGDLII
                     AEPGALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERSDMKKYLNDTLKF
                     FCGK"
     gene            complement(25787..26503)
                     /locus_tag="ACJFEZ_000206"
     CDS             complement(25787..26503)
                     /locus_tag="ACJFEZ_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HGG0916356.1"
                     /translation="MKQFLDACLKANLQISEYLNNICESDLSFCPELGFDNNQSYKLD
                     LKCEKIFIEHLCNLGQIFSEESGLIGENSPYKIILDPLDGSSNFVSKIPFYGTSAALF
                     KDEEAQSAFICNLANHEILIFDDNKNLKSNLFNPNYSPFLPNHFSQIGIVEKITLCPS
                     LINHLAQNKLKFRSLGATALSIAYAPYFSFVLVLGKTRIFDTAGALMLCKNLYIENNE
                     NFLLISKDKKIFDIILEFLK"
     gene            complement(26503..28719)
                     /gene="bamA"
                     /locus_tag="ACJFEZ_000207"
     CDS             complement(26503..28719)
                     /gene="bamA"
                     /locus_tag="ACJFEZ_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HGG0916357.1"
                     /translation="MKKIISICALVALSNAAVIKEIKFNGLNHLSNASALNLTGLKIG
                     ETINLDKINTAILNLYKQNYFENIAVEENNGILNIIVTEKPSIAKISITGIASNDRKQ
                     VESILGIKRGTLFDEASAKEASERIKAYYEAKSYFDTIVEYRKKTLENTEGLELEFIV
                     NRGENIVINNVNLSGAKEFSYSDIEPSIVNKEKEFMGWMWGRNDGKLKIFELSNDSAR
                     ISDEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIESISIENPLFSEEEN
                     IQNVKNLRSTQGKLINIEDIRKDVKTIETQSADLGYAFAEVYPDIQKNDQTQEASVVF
                     KVIPHDKVYIRNVIISGNSRTVDRVVRRELYITEGNLYNRTDLSESTNALRRTSYFDD
                     VEIKEEKVDDTHIDLIVNVKEASTGAISGGIGYGSSDGLLLNASLSDTNIFGSGIKSS
                     VSVDKSDDTLSGRISLINPRILDSQYSLGGTLYSNDYEWDNYSEKNYGFDITLGRQFA
                     RYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKTIKSSITPAITFNNTDDYYLPRKGII
                     ASTSLEYAGLGGDQEFLSSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPINQ
                     RIYLGGIRSLRGFESRTVSPKNEWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFDY
                     GMIGNKNLDEIQRMSTGLGIEWITPIGPLQLVFAKPLNDKKGDDTNTFEFNLGTRF"
     gene            28795..>29605
                     /locus_tag="ACJFEZ_000208"
     CDS             28795..>29605
                     /locus_tag="ACJFEZ_000208"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HGG0916358.1"
                     /translation="MKVAIIGLGLIGGSLGLCLKENKLISCVYGLDSSKENEQDALNL
                     GLVHELIEFENLHLCDMIFIATPVNAIIEILQKLVNLPSNTTIIELGSTKRKIIEKLP
                     AKLTKQTLFAHPMAGTENSGPKAAFKELYKDAVCVLCDSEVADDLHQKRAVEIFSHLG
                     MRIVFMDSTAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPIMWGSIFEQNKDNVLSSIEFFQKELEFCKKMIEEDKNEELKSWMQKANT"
BASE COUNT        10465 a         4169 c         5314 g         9657 t
ORIGIN      
        1 tatgcaaaga atagttgtaa aagtaggctc tcatgtgatc agcgatgaga atcttttaaa
       61 tttaaagcgc tttgagaatt tggtggcttt tttgaccaaa ttaatgcaaa aatatgaagt
      121 tattttagtt acttcagctg ctatttcagc aggatgtacc aagcttcata tagatagaaa
      181 aaatttaatt aataaacaag ttttagctgc gataggacaa ccttttttaa tcagcgttta
      241 taatgaattt ttagccaaat ttggcaaaat gggtggacaa attttgctta caggaaaaga
      301 ttttgattca agaaaggcga ctaagcatgc taaaaatgct attgatgcga tgattgattt
      361 aggaattttg cctattatta atgaaaatga tgccacagct attgaagaga ttgtttttgg
      421 tgataatgat agtttaagtg cctatgcgac gcattttttt gaagctgatt tgcttgtgat
      481 tttaagtgat attgacggtt tttatgataa aaatcctagt gaatttagcg atgcaaagcg
      541 tttggaaagg gttgaattta tcaaagaaga atggcttaat gtgagtgtta aaacaggaag
      601 cgagcacgga acaggcggta tagttactaa gctaaaagca gctaaatttt tattagaaaa
      661 tcataaaaaa atgtttttag caagtggttt tgatttaagt gttgcaaagg catttttgct
      721 agaaaataaa caaataggcg gaactttatt tgagtgatta taaattttta tttttcctta
      781 agttttgaag agtaaaataa attatgcgca taattcataa tattaagaag aaatgatgaa
      841 aaagtcagta aaaatacttc tttcagttgc tacttttgca tacgatcctt atacttgctc
      901 tttgcaaaat ttaattaatc caggtagctg caatcctaat ttagtgccta atgatgagta
      961 tgcttgctag gctttaccta atgttagagt aaatggcgag cctgtttgtg tggagtatta
     1021 ttaatgtcta ttttagtaaa tgctgtagat actttttatt ctactaaaaa tgaagctgta
     1081 ttttcagctt ctaaaagtga aaatataaaa agaaatgtcg cagattttaa tactgataat
     1141 aatacaaaaa attccgtgta tttttttagt gatgataaag aaatttcttt gaatttaagc
     1201 aatgaaagca tggaactttt gacaaatcat tttagcgcaa atgatttttt aaaactttct
     1261 aatggaaata taggcttaag cggaaaagca gccgcttttg tagaaggctg gtataaagat
     1321 attatgataa atagaaattt tttaaatgcc gatagggata aaaatggcag aatagaaaat
     1381 aacgagcatt tatctttaaa aaattcagta gaagatgtcg caaaaaatca agatttaagt
     1441 aagaattttg gggcagttgt tttaagaatg actcaaagta caacaggcta tgttgaaaat
     1501 acaattagcg ataaaagctt aagtatagaa gcacttatag atgaaagtat aaaaagtgat
     1561 agaaattttg atgggattat tacgaggctt gagtattctg ctaaaggcgg tacagatatg
     1621 caaggctata cgaattgggc tatagatgct ttaaatgata ttttagatga tagcgataaa
     1681 gccaaaattc atttagttgt cgatcctaca agcaaaattt ggcattcgta tgcaggcaaa
     1741 acattaaatg aggttaaggc ttactatgat aatcctttta gagcgacgag tggaacttct
     1801 gcttctggtt ttttaaatat agtgattgaa gaaccaagaa ttttaccaag taatgattta
     1861 gaaaatgaaa aagagcaatt gcttaatgaa tttcctgaat ttagagcttt gatacaaaac
     1921 aatcccaata ttacaaaaga aaaactttta aaacttaaaa atcagcaaag aatcacacac
     1981 aattatcaag atcatcaaaa acaagatttg caaaaagaat ttacacaaaa tttctttaaa
     2041 acagatctta aggcctaaat tcccttaaaa aattcggcaa tttccgcatt taaccttaca
     2101 aaatttttat aaagattcac cccgttttga ctggattgag ttagctttaa aatcaaattt
     2161 gttataatca aaaccttgaa ttttatataa agcgaaatga tgaaaaaaat tatttttatg
     2221 ggcacaccaa gctatgcaac ttgtatttta aaagctcttt tagaagatga aaattttgag
     2281 cttttagcgc tttttactca gcctgataaa gctgtgggta gaaagcagat tttaacacca
     2341 agtgatacta aagcattttt gcttcaaaaa gctccacaaa ttcctatttt taccccaaat
     2401 tctttaaagg atgagagcgt tatagagcaa atttgtgctt taaagcctga ttttatagta
     2461 gttgctgctt atggaaaaat tttacctaag gctattttag atatagctcc ttgtatcaat
     2521 ctacacgctt cgcttttgcc taaataccga ggcgctagtc caatacaaag cgcgatttta
     2581 aatgctgatg aaaaaagcgg ggtttgcacg atgcttatgg aagaaggact agatacagga
     2641 gctgtgcttg agagcgtaga atgcgatata agagataaaa atgtaaatga agtttttgaa
     2701 attttagcaa atttagcagc aaagcttact ctttctactc ttttaaatta tgaaaaactc
     2761 cttccaaaaa aacaagatga aagcttagct acacattgta aaaagatcaa aaaagaagat
     2821 gggcttgtga gtttagataa tgcaagagaa atttatcaaa aatatctagc ttttacacct
     2881 tggcccgggg tttttttaga aaatggtttg aaatttatag aacttgagct tgtggatgag
     2941 ttgaagcaaa atgccaaaat gggcgaaatt ttagaacttg aaaaggaaag ctttttactt
     3001 gcttgcaaac aaggaatttt acgcattaaa aaacttcaag aaagtggaaa aaaagctctt
     3061 gatggcagaa cttatttaaa tggaaaaagg cttaaaagtg cagatagctt gtgttgaaag
     3121 tattgattct acccatcttt ttttatgcga gcaaattcgc agtggcaaaa tcaatgaaaa
     3181 ttttgccctt tatgccttaa atcagacaaa gggtgtgggt agtagagaaa attcatggca
     3241 aagttctagc ggaaatttac atctttcttt ttgcattaaa gaaggcgatt tgccaagcga
     3301 tttgccctta gtttctgtga gtatttattt tgcttatttg ttaaaggaaa ttttacaaga
     3361 aaaaggttct agaatttggc ttaaatggcc caatgattta tatttagatg ataaaaaagt
     3421 gggaggggta ataagcacta aaatttcaga ttttatagtg ggcggcatgg gtttaaattt
     3481 aaaatttgct ccccatgatg cagctttgtg tgatgttgaa attttgctta aagatttgat
     3541 acaagagttt ttacaaagac tagagaaaaa atttttatgg aagcatattt ttagcaagta
     3601 tatgttagaa tttgaaaaat caagacaatt tagtgtccat tatgaaggta aggtattttc
     3661 acttgaaaat gcttttttat atgaggatgg atcaatttta ctaggcgata aaagggtgta
     3721 tagtttaaga tgagtgagat tattactata gcaaatcaaa aaggtggagt aggtaaaact
     3781 acaacagctg tgaatttagc ggcatctttg gcggtggctg aaaaaaaagt tcttttaatt
     3841 gatgtggatc cacaagcaaa tgctacaaca ggcttgggtt ttaatcgcaa taattatgaa
     3901 tataatattt atcatgtttt tataggtaga aaaaaacttt ctgatattat tttaaaaaca
     3961 gaattacccc aacttcatct agctccttca aatataggtc ttgtaggcat agagcaagaa
     4021 cttgcaaaag gcgaaaataa cgaaaaaaaa atgatactca aaaaccaaat tcaagaagta
     4081 cttgatgagt atgattttat tatcatcgat tctccgcccg cacttggaag tatcactatc
     4141 aatgcttttg ttgctagcga tagtgttatc atacctatac aatgcgagtt ttatgcgctt
     4201 gaaggtgtgg caatggtttt aaatacgatt aaaattatta aaaaaactat caaccccaaa
     4261 ttaaaagtgc gaggattttt accgactatg tatagctcgc aaaataatct ttctaaagat
     4321 gttgtagagg atttaaagca aaattttaaa aagcaacttt ttaccataaa tggcaatgaa
     4381 gatgatttta ttgttatccc tcgtaatgta aaactagctg aaagcccaag ctttggaaag
     4441 cctatcatac tttatgatat caaatctcct ggttctttgg cttatcaaaa tttagcatat
     4501 tcgattttag gataaaacaa tgggtcttaa taaaaataga ggtttgagca ccttaatggg
     4561 ggatgtagga gaagtttata gtagagaact aggtcttgat aaaaaccaag tgagtcttgt
     4621 agaaatttca aaaattactc caaatccttt tcagccaaga aaaacttttg atgaagcagc
     4681 tttaaatgaa cttgcaaatt ctataaaaga gcatggatta atacaaccta taatcgtact
     4741 taaaaaaaat gatagtttta tcttggtagc cggtgaaaga aggcttagag ctactcaaat
     4801 tttaggcaaa gaaaatatac tggcctttgt gtcagacagc gatgagagca agcttagaga
     4861 attagcactc atagaaaata tacaaagaga aaatttaaat cctatcgaac ttgcaaattc
     4921 ttataaggat ttaatagaag tttataatat tactcaagaa aatttagccg aacttatcca
     4981 taaaagcaga acccaaatca caaatacttt aagactttta aatttagatc ctaaaactca
     5041 agatctcata gcaagtggta aaatttcaca aggacacgct aaggttttag taggcttaga
     5101 taaagaagat gaaaaagtac ttgtagacag tattttgggg caaaaactca gcgtaagaga
     5161 cacggaaaga cttgttcaaa aggttaagaa taaagaaaac acagaagatg tagaatttga
     5221 aaattctatg caaagtttaa aacagacttt aaataaatta ggatttgcat ctaaaaacaa
     5281 taaaaaggaa ctcattattc gtttggacaa tattgaaaaa attaaaaaac tgactgaaat
     5341 tctcaataaa ttttaacaaa gtattagttt ttatttgtta caataaaaga cttataatac
     5401 cccaaaggag atctatgttt gaagatatgc atccttccat aatgcttgct actatggcta
     5461 tttttttagc tatgatagtg attttaaaca ctatgctata caggcccctt ttgaaattta
     5521 tggatgaaag aaatgattct ataaaaaacg acgaaaacaa agtcaaggaa aattcacaag
     5581 aaatgttagg agcaaacgac gaggttgagg caattcatgt gagtacaaga gaagaaatcc
     5641 ataaaatcaa acaaaatgcc atcaatgcag ccaaagagga agctcaacaa gctataaaag
     5701 ctaaaaagga agagttagag cgtaaaatgg ctaacttcta tactgaatta gtatctcaaa
     5761 aaaaagaact tcaagatcat ttgtcagcac acttgcctga ccttaaacaa gctttgcaaa
     5821 ataatattaa acagcactaa ttaaggagaa agatgaaaaa gctattttac tttatttttt
     5881 tactgccttt atgtgccttt ggtgcatcta atggtagcgg agagtatgat attgttccaa
     5941 gaacaataaa tttcttaatt tttgtagcta tattgtatta ttttgtagca aatcctttta
     6001 aagcttttta taaaaacaga attttaagaa tttctttaaa attagacgaa attcaaaaga
     6061 agcttttgga aagcaaggca aaaaaacttg acacaatgaa aaagcttgaa gaagctaaag
     6121 caaatgcagc agcagcttta gttgtggcaa aaaaagaagc agaggtgctt gctcaaaaaa
     6181 ttaaagaaga aactcaaaat gagcttgctt tacttcagaa gcattttgaa gagcaaaaag
     6241 actatgaatt tagaaaaatg gaaaaagagg ttgtgtcttt aactcttaaa gagatttttg
     6301 aagattcaaa tattgcttta aaacagaatg aaatcattga tattatgatg aagaaggtgt
     6361 cttaatgaat gatctaatag ctaaaagata cgcaaaagct atagccttaa gagcagatat
     6421 ttcagaattt tatgataatt tgtctgtttt aagttcggct tttgcttcgc ctaaatttaa
     6481 aaatatcata gaatcaaatc aaattcaaaa agaaaaaaaa ttagaatttg ttatttcttt
     6541 aatagaaaaa gctagtccta gttttaacaa ctttttaaaa ctattagcag aaaattcaag
     6601 actttcttgc attcctcaaa ttgctaaaga gcttgaaaga caaaaatctt ttaaagaaaa
     6661 tattttttta gggaccgttt attctaaaga agtattaagc gaagataata tcaaagagct
     6721 tgaaaataga cttagtacta agtttggtgt taaaattaaa ctacaaaata aagtaggttt
     6781 aaatgaaggt gtgaaaattt cactagaaga attaggttat gaaatttctt tttcaatgaa
     6841 agctcttcaa aacaagatga gcgaatatat actcaaaatt atttaaggag aatgtgtaat
     6901 gaaatttaaa gctgatgaaa tcagttctat cataaaagaa agaatcgaaa attttgattt
     6961 aaatttagag attgaagaaa caggaaaaat tatttcagta gctgatggtg tggctaaggt
     7021 ttatggtctt aaaaatatta tggccggtga aatggtagaa tttgacaatg gcgataaagg
     7081 catggcatta aaccttgaag aaagtagcgt gggtatagtt atacttggaa aaggagaagg
     7141 cttaaaagaa ggtacttctg taaaacgcct taaaaaactt cttaaagttc cagtagggga
     7201 agctcttatc ggtcgtgtgg tgaatgcact tggtgaacca attgacgcta aaggtgttat
     7261 caatagtaat gaatttagat ttgtagaaga aaaagctaaa ggtatcatgg ctagaaaaag
     7321 tgtacatgaa cctttacata cagggattaa agctatagat gcattggtgc caattggtcg
     7381 tggccaaaga gagctcatca taggcgatag acaaacaggt aaaactactg tagctgtaga
     7441 tactatcatt tctcaaaaag gacaaggagt tgtttgtatt tatgtagcca taggacaaaa
     7501 gcaaagcaca gtggctcaag ttgtaaaaag acttgaagag catggagcta tggattatac
     7561 tatagttgta aatgcgggtg cttcggatcc agcagcactt caatacctag caccttatac
     7621 aggtgtaact atgggtgagt tttttagaga taatgcaaaa cacgctttaa ttgtttatga
     7681 tgatttgagt aagcatgctg tggcttatcg tgaaatgtct ttgattttac gccgtcctcc
     7741 aggtcgcgag gcttatcctg gtgatgtttt ctatcttcac tcaagacttt tagaaagagc
     7801 tagtaaatta aatgatgagt taggtgcggg ttctttaaca gctttaccaa tcatcgaaac
     7861 tcaagcgggc gatgtttcag cttatattcc aaccaatgtt atttcgatca ctgatggaca
     7921 aattttctta gaaactgatt tatttaactc aggaattcgt ccagctatca atgtgggtct
     7981 atcggtttct cgtgtgggtg gtgcggctca aattaaagca actaaacaag tttcaggaac
     8041 tctaagactt gatcttgcac aatatagaga actccaagct tttgctcaat ttgcaagtga
     8101 tttggatgag gcaagtagaa aacaacttga acgcggacaa agaatggttg agttattaaa
     8161 acaacctcct tattctccac ttagtgttga aaaacaagtg gttttaattt ttgcgggaac
     8221 aaaaggttat ttggatgatg tagctgtttc aaaaatcaga gaatttgaag atggaattta
     8281 tccatttata gaagcaaaat atccagatct ttttgagcaa attcgttcga aaaaagcttt
     8341 agatgcagag ttagaagaga aattagctaa agcaataaac gagtttaaag caaaccattt
     8401 ataaggttct tttatgtcta atttaaaaga aattaaaaga aaaataaaaa gcgtccataa
     8461 tacgcaaaaa acaaccaatg cgatgaagct tgtttctact gccaaattaa aaaaggcaga
     8521 agaagcagca aaaagatcta gagtttatgc gcaaaaaatc gatgagattt taagtgaaat
     8581 ttcttttcaa gtcaataaga ttgttcacaa tgaagaggat tcaagatttg ttttatttca
     8641 taagaaaaat caaatcaaaa atgtagatct gatctttata acagcagata aaggactttg
     8701 tggcggtttt aatatcaaaa ccctaaaggc tgtaagtgaa cttttaaaag aatatgaaga
     8761 aaaaaatatc aatgttcgct taagagctat tggaaaaaca ggaattgagt attttaattt
     8821 tcaaaaaata gagcttttag aaaaatatct tggcttgagc tcaagtcctg attatgataa
     8881 agcttgctct gttattcaag ctgctgtgga tgattattta aatggaataa ctgatgaagt
     8941 tgttctagtg cataatggat ataaaaatat gatcacacaa gaattaaaaa tttctcatct
     9001 aatcccagta gagccaaagc aaatcgaagg aaactcgaat tcgcttttag aacttgaacc
     9061 tgaagataca gatctcttgg gagatttgat gaaaacatat tttgaataca atatgtatta
     9121 tgcattaatt gattctttgg ctgcagaaca tagtgcgaga atgcaggcta tggataatgc
     9181 caccaataat gcaaaagcta gggttaaaca gcttaattta gcttacaata aagcaagaca
     9241 agaatctatc actactgaac ttattgaaat tatcagtggt gttgagtcaa tgaaatagta
     9301 aaatttttaa ggagagtata aataatgcaa ggatttattt cacaagtatt aggtccagtt
     9361 gttgatgtag attttaacga ctatttgcct caaattaatg aagccattgt tgtaaatttt
     9421 gaaagtgaag gcaaaaaaca aaaacttgtt ttagaagtag cagcacactt gggcgataat
     9481 agagttagaa ctattgctat ggatatgaca gatggcttgg taagaggact taaagcagaa
     9541 gctttgggtg ctcctattag cgttcctgtg ggtgaaaaag ttttaggaag aatttttaat
     9601 gttacgggag atttgatcga tgaaggtgaa gaaatttctt ttgataaaaa atgggcaatt
     9661 catagagatc caccagcttt tgaagatcaa agcacaaaaa gtgagatttt tgaaacaggg
     9721 attaaagttg tggatttact tgctccttat gcaaaaggtg gtaaagtagg tctttttggt
     9781 ggtgcaggtg ttggtaaaac tgttattatt atggagctta ttcacaatgt tgcatttaaa
     9841 catagcggct attctgtatt tgcaggtgta ggtgagagaa ctcgtgaagg aaatgacctt
     9901 tataatgaaa tgaaagaaag taatgtttta gacaaagttg ctctatgtta tggacaaatg
     9961 aatgaaccac caggggcaag aaatcgtatt gctttaacag gtttaacaat ggctgagtat
    10021 tttagagatg aaatgggtct tgatgtgctt atgtttattg ataatatctt tagattttca
    10081 caatcaggtt ctgaaatgtc agcactttta ggaagaattc catcagctgt gggttatcaa
    10141 ccaaccctag caagtgaaat gggtaaattc caagaaagaa ttacttcaac taaaaaggga
    10201 tcaattactt cagttcaagc agtttatgtt ccagcagatg acttaacaga cccagctcca
    10261 gcaactgttt ttgctcactt agatgctaca actgttttaa atagatctat tgctgaaaaa
    10321 ggtatttatc ctgcggttga tccacttgac tcaacttcaa gaatgcttga tcctcaaatt
    10381 attggcgaag agcactataa agttgcgcgt ggtgttcaat ctgtacttca aaaatataaa
    10441 gatttgcaag atatcattgc aattttgggt atggatgaat taagcgaaga agataaattg
    10501 atcgttgaaa gagcaagaaa aattgaaaaa ttcttatcac aaccattctt cgttgcagaa
    10561 gtatttacgg gtagccctgg aaaatatatt tctcttgagg aaaccattgc aggctttaag
    10621 ggaattttag aaggtaaata cgatcactta ccagaaaatg ctttctatat ggtgggtaat
    10681 attgacgaag ctattgcaaa agcagataaa ctgaaaggtt aatttatgga caatttaatc
    10741 agttttgaaa tagttacacc tatgggtgtg atttatcaag gggaggtaaa atcagttacc
    10801 ttgccaggaa gtgaaggaga atttggagta cttaaaggac atgctgcttt agtttcatct
    10861 ttaaaatctg gtgtaattga tatagaaaaa gctgatttaa atcatgaatt aatcgcaatt
    10921 gatgcaggtc atgctaaggt agatgaagat aagatcagtg ttttggctaa gggcgcggtt
    10981 tggatttcag gttctagcga aagcgaaatc gaaaaaaatc ttgaaagcgc taaagaatta
    11041 atcaaatcta tgagttcaga caatacagct ttagctgcta ccttttcaaa gcttgacaat
    11101 gcaaaggtta ggtagatgaa ttttgaagcg atatttcagt tttttggaag ttcaagcata
    11161 attacttata tagtcttagc ttggctttcc ttatatttta tactttcttt ttttatactt
    11221 ttttcaagag tgacttattt ggcagcttgg aaaaataaag aaaaagaaag tttagaagct
    11281 ctactcttgg gagaaaaaga tttgagtaga acgcgttcta ttttaagaaa gtgcacagat
    11341 actagtttat cacatcttga gatttacaaa aatttagcaa gtcgtcgcgc atccaatggg
    11401 cttacttggc ttagtatagt agcttcaacc tctccattta taggactttt tgggactgtt
    11461 atttctatac ttgagacttt tggtggttta gggacgcaaa attctttaag tattattgca
    11521 cctaagatca gtgaagcttt agttgccaca ggctgtggta ttttggttgc tattcctgct
    11581 tatacttttc atcttattat taaaagaaag gcttttgagc tcttaagtat aattgatagt
    11641 gagattaaag ttattagttc taacaaatag gatttaagat atgccatttg acgatgagaa
    11701 gccagagctt aatataactc ctttggttga tatcatgctt gttttattgg ctattttaat
    11761 ggtaacagct ccaagcatta cttatgaaga aaaaatcaat cttcctcaag gaagtcaaaa
    11821 atccacaagt gctcctagtg ttaaaagctt aattgttagt attaatgcta aaaaagagat
    11881 atttttaaat caagaaaaat atagttttgt aagctttgca gataatcttg cgcaaaaaaa
    11941 agcacaattg aataccgacg aaccggtatt tattagggct gataagagtt taaaatacga
    12001 tgatgttatt tttgttttaa aaagtattaa aaatttgggc tttaataaag tcgccttgca
    12061 aacagaataa gctatgaaag aatatggtct aggcaagata aattcatttt tgcttgctgt
    12121 tgcggtttat gtttttatta taattcttat tttttttaga ctcgtaaccc acatacaacc
    12181 tgcaatccaa tatacggata ttcaagatag ttttatcgac atagagctta tggaaccctc
    12241 aaaaaaagtc gtaaatgagc aaagcgctcc taaagatatt caaaaacctg cccaagagct
    12301 tgatattgaa aaactttttg cacaaactac aaacaaagca gtaaaaactg aagatgtgga
    12361 tcaaaaagcc agcaatttta atgagctttt tggtagtatc aaagagatac aagaggaaaa
    12421 aactactaaa atacaatcaa gcgctaaatc agaaacaaca agcagttcaa aaactcaagc
    12481 ttcagagctt gtaaagcaat taaacgatag cttacttgaa gaagaaagta tcaatcaagg
    12541 cgaaagtatt aaaaatcaaa agacagggat ttatgatgag tttttgggaa aggtggtgcg
    12601 caccatcacc caaagatgga gacaatatca tcctaatagt gaaaatattt cagtcaaggt
    12661 aaaaattttt attgatgaaa atggaaattt tggctatact tcagtcgaaa aaagcggaaa
    12721 ttctttatac gacgcaaaag tagccgaatt tttagaaaac caaaaaggta aatttatagc
    12781 ctatccacct caaaataaaa gcataagtat tactatgaat ttaaaagatg aggcgcaaat
    12841 tcaaaaataa ttgaggagta aaaatgaaaa aaattgtaac agtattttta atttttttag
    12901 gaatactttg ggcagaagat cctgtgattg atgtcgtaaa ttcaggcgta gtcttaccaa
    12961 aaatcattgt taaagacaat tcgaatttaa gtgatattaa tttaaagcgt agtttttata
    13021 atatcattgt aaatgacttg aaagtaagtt caaattttga agttgtaagt gatgcaagtt
    13081 cagaagctgc aaattacact tttgaatacg atttgagtaa aaatggcaat gctttaaatt
    13141 tgcatgttaa gatcaaagca ggaggcttgg aaaaatcaag tcaaacctat gctttaaatg
    13201 gtgtagagca gtatcctttt ttggcccaca aaagcgtaaa agcttcggta aatgcattag
    13261 gacttgctcc tgttgaatgg atggatcata aaattttaat tgccagaaat tcaagctcta
    13321 aaaaaagtca aattatcatg gccgattata ctttaacata tcaaaaagta atcattgatg
    13381 gaggattgaa tttatttcct aaatggggaa ataaagaaca aagtattttt tactataccg
    13441 catacgatca tgatagacca acgctttatc gctatgactt aagaactaat aaagcaagta
    13501 aaattttagc aagtggaggt atggttgtag caagcgatgt aagcttagat ggtagtaagt
    13561 tacttgtgac tatggctcca aaagatcaac ctgatgttta tttgtatgat ttaaattcta
    13621 aaaatttaac tcaacttacg aattattcag gcatagatgt aaatggaaac tttataggcg
    13681 tagatgatag taaatttgtt tttgttagcg atcgcttggg ttatcctaat atttttatac
    13741 aaaatctcaa taatggatct gccgaacaag cagtttttca tggtaaaaat aattctgcag
    13801 tttcaaccta taaagatttt ttagtatatt ctagtcgtga gccaaatcaa gtaggtgttt
    13861 ttaatattta tttaatgtca atcaatagca caggtattcg tcaatttacc gcaaatggaa
    13921 agaatttatt tcctagattt tcaagtgatg gtggtagtat agtttttatc aaatatctcg
    13981 gagcacagag tgctttaggt gttattcgtg ttaatgcaaa caagactttt tattttccat
    14041 taaaagttgg gaaaattcag tctattgatt ggtaaaaatt tgtaattttt ggttaaattt
    14101 aattaatttt agatataatg ctaacaattt attaactttg aaaggtcata aatgaaaaaa
    14161 attcttttta gttctattgc agcatttgca ttggttatca gtggttgtag cacaaaaagc
    14221 actagcgtaa gtggtgatac aagtgtagat tcgaatcgtg gaacaggtgg tagtgatggt
    14281 tgggatattg attcaaaaat ttctcaactt aatgatactt taggaaaagt atattttgat
    14341 tttgataaat ttaatatccg cccagatatg caaaatgttg ttaatacaaa tgctaatatc
    14401 ttcaacaatg aagtaagcgg tgtaagcatt actgttgaag gtaattgcga tgagtgggga
    14461 acagatgagt ataatcaagc tttaggttta aaaagagcaa aagcagttaa agaagcttta
    14521 attgctcaag gtgtaaattc tgacagaatt gctgttaaaa gctatggtga aacaaatcca
    14581 gtatgcacag aaaaaacaaa agcttgcgat gctcaaaatc gtcgtgcaga atttaaacta
    14641 tcaagataat tgatgaaaaa aatattctca gtagctctta tcggagctac tttactttat
    14701 gcagaaagct ctgcttttgg tgcaggagat ttaaccagta attcccccta tggtttaaca
    14761 tcaagtgaaa aattactcaa ggaaaaatta gatactttaa gcaataataa tgttcaagca
    14821 aattctagaa ttaatgagat tgaacaaaga gttgaaggat tgcaaagtac tttagagggt
    14881 ataaattcgc agtatgccaa atccaattct agattaacgc aacttgaaac ccgttttgaa
    14941 gctatggaaa ataatttaag cacagaactt caaaatttaa aagcttatgt tgaagaaagt
    15001 agaaaaattc aagatgctaa caataagcaa attaagaaaa ttttaaccga attaagttct
    15061 ttggttgatt ctattaacgc aaattatgtg tctaaagatg acttaaatag tacgaattta
    15121 agtatcaaaa atacagttgt tgtacctcta tcgatcgatg ataaaaacat aacttctagc
    15181 gatgaaaaca atgccagtgt tgctccagtg caagaaaaag aagttaaaca aatagatgat
    15241 tcttggaaaa agaaaaaaaa taacgaaatt ttagacttgg ctatcaaaga tttaaataat
    15301 aattcttatg agaatagcaa aattaagtta aactatctca tatcaaaaca atacaaacct
    15361 gcaagggcaa atttttggtt aggagaaatt gagtataagc aaaagaaata caataatgct
    15421 attgcttatt ataaaaaaag ttctgctttg agcaccaaag gggattattt tccaaagctt
    15481 ttatatcaca cagcgatttc tcttgataag ataggagatc caaaaacagc taatgggttt
    15541 tataaggctt taaagacaaa ttatcctaat tcaccggaag caaaagcttc ccccaataga
    15601 aaataatatc aaggagaaaa aatggctata gaaaaaaata gcgtagtttc aatgttttat
    15661 gaattaaaag atgcaaatac aaatgaagtt ttagaatcaa atttatatgc tcaaccgatt
    15721 tcttttatct taggcaaagg gcaaatttta gaagctttag aagaagaagt gatgaagctt
    15781 gattgcccta gcaatgctga tgtcgtgatt aaaaaagata aaggcttggg cgaatacgat
    15841 gaaaatgcag tgcaagtttt accaaaagag caatttgcag gcattgattt aaaaataggt
    15901 atggagcttt ttggcgaggg tgaaaacgga gaaaccgttc gcgtaactgt taaagaaatc
    15961 agcgataatg atgtaactat tgattacaat catccttatg caggtcgtga tttgcttttt
    16021 tctttaaata tagtagatgc cagagcagca agtgaagatg agcttcttac aggcattata
    16081 gcaggaagcc atagttgtgg ttgtggaagc ggacatgggc atggacatga tcatcacggg
    16141 catggcggtg gcggatgctg cggtggcggt ggcggtggat gtggttgcca ctaagatgaa
    16201 tgctgtattt atttttccag gtcaaggctc tcaaagtctt ggcatgggta aagattttta
    16261 tgaaaactcc aaaaccgcaa aagaacttct agaaaatgcc agcgattttt gtaaaattga
    16321 ttttaaaaat ttattgttta acgaaaatga tgatttaaac aaaagtgaat ttacacaacc
    16381 tgctatactc ttaaattctt taatggctta tagtgctttg agtgaattaa aacctgatat
    16441 taaggctaaa tttgctttgg gtcattcctt gggtgaattt tcagctttgg cgatcaatgg
    16501 tgcttttagc tttttagaag caactatgct tgtgcataaa agaggacttt ttatgcaaga
    16561 agattgtgca aaagttgaag cgggtatgat ggtaatttta gggcttgatg ataaaaaagt
    16621 ggaagagctt tgtcaaaaag ctagagatga ggataaaaaa atttttgcag ctaattataa
    16681 ctgcgatggg caaatcgttg ttgcaggttt aaaacctgat ttagcaagct atgaaggcac
    16741 atttaaagaa gcaggcgcta aaagagctat gcttttaaat atgagcgtgg caagccattg
    16801 tccgctttta gaaaacgcgt ctaataaact ttgcatagag cttgaaaaaa tactagagcc
    16861 tacttttaaa gctgtaattt ctaatgctac agctaaagct tatacgagca aacaagaagc
    16921 tcttgagctt ttaaaaaccc aacttgtagc tcctgtgctt tataaacaaa gcattaaggc
    16981 ttgtgaaaat gaagcagatt gttttataga atttggcgct agtgtgctta aaggtttgaa
    17041 taaaaaaatc acttcaaaag aaacttatgc tttaacaaat atgaatgata tagaagaatt
    17101 tttaaaggta atataaatga aaatagcaat tttaggtgca atgagtgaag aaatcactcc
    17161 tttgcttgaa acacttaaaa attatacaaa aatagaacac gctaataata cttattattt
    17221 tgcaaactat aaaaatcatg agcttattct tgcttattct aagataggca aggtaaattc
    17281 taccctaagt gctagcgtaa tgatagaaaa atttggcgcg caagttttac tttttacagg
    17341 agttgcaggt gcttttaatc ctgaacttga aattggtgat ttgctttatg cgacgaaatt
    17401 agcacaatat gatcttgata tcactgcttt tggacatcct ttgggttttg ttccaggaaa
    17461 tgaaattttt ataaagacag acgataaatt aaacaatctt gctttagaag tcgcaaaaga
    17521 attaaatatc aaacttcgtg caggtattat cgcaacgggt gatgaattta tttgtgatga
    17581 ggcaaagaaa gcaaaaatca gagaaatttt caatgcggat gcttgtgaaa tggaaggcgc
    17641 aagtgtggct ttggtttgtg atgctttaaa ggtgccttgt tttatcttaa gagctatgag
    17701 tgataaagcc ggcgaaaagg ctgaatttga ttttgatgag tttgtgatca attcagctaa
    17761 aatttcagcc aattttgtac ttaaaatgtg tgagaaatta tgataaatct tagcaaaaaa
    17821 ctcatacgcc aagttgcaca agctaatgct aaatttggac ttattaaaga tggagatagg
    17881 gttcttttag gacttagcgg gggaaaagat tctttagctt tagcacatct tttaaaaaga
    17941 atgcaagctc atgcaccttt taaattcgag cttgaagcag cgactttaag ctatggtatg
    18001 ggtgaggatt actcagggct tcatgcgcat tgtgaggagc atgggatcaa acacagcgtg
    18061 attgattcaa atatctatga agtttcaggc gatacgataa gacaaaattc aagcttttgt
    18121 agctattttt caagaatgcg ccgaggtgct ttgtatactt atgctcttga aaaaggtttt
    18181 aataaattag ctatcgcaca ccatttagat gatgcagctg agagcttttt tatgaatttt
    18241 atccataatg gagctttaag aactttagcg cctatttatc aaagcaaacg aggtattacg
    18301 gttatacgcc ctttgatttt tgtgcgcgaa agacaactta gagataatgc tacgcaaaat
    18361 gaacttagcg tgataggaaa tgaattttgt cctggtatga aactcagtga aaaaaatgta
    18421 aaatttccac acgctagaga agaagctaaa cagcttttag caaatttaga aaaagatcat
    18481 cctaagcttt ttacaagctt aaaaactgct tttgcaaatt tacacacaga aagtttttgg
    18541 ctagaaagga caaaaatatg aaaaaagctt ttgttttagt ggattatcaa aatgatttta
    18601 ttgatggaag tttaggtttt gataaggctt taaagatcaa agaaaatatt cttaaagcct
    18661 taaatcaaat cgattttaat aacacgcatt tgcttcttac ttatgatact catgatgagg
    18721 attatttaaa gagcaaggaa gggttaaatt tgcctatcga acattgtata aaagatagct
    18781 cgggttggca aatgcctaaa gattttactc cctttttgca aaaagctcat aaggtttttc
    18841 ataaaaatac ttttggaagt ttagaatttg caaattttat cgcaaaaagt gaatacgaag
    18901 aaatccattt tgcaggactt gtttcccata tttgcgtctt ttgtaatatc attttagctt
    18961 ttagcgcgaa gccaaattca agacttatac tccatcaaaa tttaagtgca agttttgatg
    19021 aaaatttaga aaaatccgct tttgatctac ttagagctta tggcattgaa atactttaat
    19081 gcaaggcttt atacttcata cgcaaaaagt aaaagatgag gatttgattg tttatatttt
    19141 aagccctaaa gagcttatca aggcgtatcg tttttatggg cttagacatt ctagtatttt
    19201 aaatggttat aaaattgatt ttgctttaga tgaaaatcct agctttttgc caagacttaa
    19261 ggatgttttg catttgggtt ttgtatggat tatggatcgt gaaaaaatgc tgatttggca
    19321 ggaatttatc cgtcttctgt atcatcattt aaaagatgct caagtacttg aaagttttta
    19381 ttttgagctt ttagatgaat gtgtaaagcg ttttgaaaag caaaatccca agcgcgtgat
    19441 tgtggacgct tatcttaaga ttttagaatt tgagggaaga ctccatcaag aatttagatg
    19501 ttttgcttgt gatgaaagca tagaaaatcc catcacttta attcgtgctt ttttaccttc
    19561 gcatcacact tgtgctttag gttatgcatt tgaaaagcag aaattaaaaa atttttatga
    19621 aagtaaaaat tgtgcgattt ttggtgatga agaaataggg aatttgtatc aattgatcaa
    19681 ggagggttta tgatattaag tgatgaaaaa tgcgaatttt tagagcctat agcaagtttt
    19741 ttaagctcta aggatgtgga acttgttttt gtagaaagta aggaaatgca agagattaac
    19801 ttagagcaaa gaaagcaaga taaaaccacc gatgtgcttt cttttccact tgaaaatatc
    19861 gatgagagct tgcctttggg ttctgttgtg attaatatag atttggcaaa gcagaaggct
    19921 aaagagttag gacatagttt tgaagaggaa gtaagcttgc tttttatcca tgccatgctt
    19981 catttgcttg gatttgatca tgaggtagat aatggagaaa tgagagaaaa agaaaaagaa
    20041 cttatagaac actttaattt gcccaaaagt ttgattataa ggactttgga agattaagta
    20101 agattttttc aagggctaga agacttgcgc tttatatttt aaatatatga gtaaaaatat
    20161 taaaaaaatc attttttgcc gatttacttt agaataaaat ctattccaag gtgataaaga
    20221 tgatagtatt tcctctaagc tcttttaata gatattttgg aaacaatcct ttgcaaacac
    20281 ttaccaaaat aagagatgaa agtattgaaa atggaaatcc tgagcttgca aaaaaacaaa
    20341 gagaagaatt aggtaatgat ttgatagatt tgtataagat ttctaaaaaa ttcagcgata
    20401 aaatagaatt agtcgagggt tcaatagaag ataaacttag aaacaatgaa ttaccagagt
    20461 cagaagttaa aaatttattt caatggatgg ataagaatgc caaacacccc cgttggatgc
    20521 atattgatgg ggtgagttat gatgaagctt atgttaaaat ttttcacaca agcaaaagta
    20581 tagatgaatt taaagaaaaa tatcttgagc ttcaaaaaaa atattttgtt gattttaaca
    20641 atattgattc atcacagaaa acactgcaag aaaatttaga agaaaacaaa gaaaagcctt
    20701 ttaagcctat acaagcagaa agtaaaagcg aaacctacaa agatgataat aaaatgaatg
    20761 agcttttaag aaaactacta gaaactaaat ttggcacaag tgatgaatta gaaattcttt
    20821 ttggtatgaa atttagcgat gatgatgcag gagaatttaa taaaattctt tctttaaatt
    20881 ctgcaccaaa aagcgtagat attaaggctt aaaaatataa aaatttaaat tataaaaagg
    20941 attaaaaatg ataggtatca actcaacttt caataactcc tttgtcaatc ttaatattaa
    21001 aaacaataac aactcttcct taaattcaaa tacttcaaat gctaatgtaa aaaatttaca
    21061 agacacccaa gacactacta aaacaagcaa taaagtctta ggttatgaag tagataaaga
    21121 tggctttttt acaagtgaat ttaataaagc agcaggaatt ccaaaagatt ataagattta
    21181 tgctaaaggt gctgaaaatt ttgttaatta tatcactaac cttaatttta aatcttttac
    21241 caatatagat attgccaaaa gtttaggtaa tgcttataag gttttttcac agcttattga
    21301 tgaaccgagt ggaaatttta ctactgaaga tttaagcaaa atccctttgg gattttctta
    21361 taataaaaaa agttttcaag taacaaatat ttattattcc gaaaaagatt ttgagagtgc
    21421 tttaagtttt gaagatgact taaaaatcta tcaaaatcct aagcaattaa ccctaagttt
    21481 cccaagctgg aaagaaaaag ctcctgctga ttatattaaa aaaaatagcg atatatttga
    21541 tccaagctct catataaata ttggagcatc attttataaa aatgataatg gcactataag
    21601 caaaggtggt gttttaatgg cattctttgc aggtatgtca ggacaaaatc ctcttataga
    21661 aggtgaaaca actatagagg gaaagcttct tggctatgat aaaaatatga gccaaagtca
    21721 agtggaagat ttaaacgaat ttataaatca aaatcctatc gaatggagta taacaggaga
    21781 tgtatttgca gatagtgtat atataaccaa acttagaaat acaataactg atatagatga
    21841 atttaaaaaa caatggctag aaatgaaagc caaaagtgat gaaatggggg aaatatataa
    21901 agctgaaata gcaaaacaaa atagagaaat tgctctagca caaaaaaatt caaacaaaga
    21961 aaaagataaa ccctttgaac ctatacaagc agaaagtaaa agcgaaacct acaaagatga
    22021 taataaaatg aatgagcttt taaaaaagtt actagaaact aaatttggca caagtgatga
    22081 gctagaactt ctttttggta tgaaatttgg tgatgataat gcaggggaat ttaataaaat
    22141 tctttcttta aattctacac caaaaagtat agatattaag gcttaagatt ttttaaatta
    22201 taaaaatcaa gttaaactaa aaaaattctt ctattttttt tcgcatttct tcgacattgt
    22261 cgatgcgatt aacactatct ctaaaggctg aagcatcttt atggcctttg gaatactcgt
    22321 gtaaatgttt acgaaatata ctcacacctt gatctttata gtgttttatc atttcgtcaa
    22381 aatgagtgag tatgatttct tttttgagtt tttcatctac atttttacca cttttgattt
    22441 cataaaatat ccaaggattt cccacacttg cacgccctat cataagtcca tcacattttg
    22501 tgatctcata aacctcttta gcattttgag cattgatatc accatttgcg atcacaggaa
    22561 ttttcacgct tgctttagca ttggcaatgg attcataatc cgcttttcca ctataaagct
    22621 gttttcttgt gcgtccatga atacttacaa aatccacccc caagctttcg caaattttag
    22681 ccattttttc gggatatttt tcattaaagc ctaagcgaaa tttaacactt gtaaggcttt
    22741 ttttattgtt ttctttaatc actcccacaa ggcttttaaa aagctctaaa ttttctagca
    22801 gagcacttcc tgcacattgt ttgacgactt tatttacagg acaaccacaa ttaaagtcaa
    22861 tgccatctac aaaatccatt tcattaagca tttgaactgc ttttttaagc acttctttat
    22921 caccccctgc aatttggact atatagggat tttctaattc agctctttct agcatatgta
    22981 aggttttaga gctttcataa actaaagcat tggaacttat catttcactt attgtgatat
    23041 ctgcaccaaa tttttttacc acattgcgaa aaggcaggtc tgaaaaaccc gccataggag
    23101 ctaaaaataa aggctttttg ctaaaatcta tcattgtata agctgattta aatcgatttt
    23161 gatatttttt tcacgcaagg ctaaaaaggc tttaaaatca ttgaattttt tgtcatcatt
    23221 atgaatttgt tctctgagtt catctaaaag tccaaattca gctaaaagat ataaatacgc
    23281 tcttaaagct tcactttttt catttttgat tttgttaaaa attcctataa ctgcgtcagg
    23341 atttaaaagc ttgatgctta gttttgctat atcaagatag tctttttcac taaggatatt
    23401 gtgagaaagt aaaacttcat attcagcagc attaagctct aaatttcctt ctttaaaacg
    23461 cttgatgagt gtaaggatat gacaaggttt ttttgtgatt ttgatatttt taatttgctc
    23521 ataagttcct ttttttatca aactttcaaa agccagatct tggaattcgt cttgagtttg
    23581 actaaggttt ttgattttgg aataagcata atttatatca tttttgatat gatttttttc
    23641 attttctaga aataagatat tattattttc gagtttaaat ttgttaagat tgaagtattc
    23701 ttctttttta atgccgtcta taagatctaa aatttcattg attttgtttg cattagggat
    23761 tttttcatgt gtttttaggg ttttagctag ctgtgctact tgtctaaatt cctttgtttg
    23821 aaagctgata tttgattctt tttccaaaag aaggtcgcgg gtaaaatttt caaatttggt
    23881 agaatctttg aaaaaatgct taaattttaa agtgagtaaa aaataataaa aacccatatg
    23941 aatgatggca aaaaacacta aaggtatcaa aggtaaaata agccatatca ttataggtag
    24001 ctcgaagcta tatgtattga aatttaaagt ataatttcct aattctaaat accaagcaag
    24061 agcaaatata agagctatat aaataaagct tgctataaaa aataatctaa ttttcataac
    24121 tctccttttt ctaaattttc gcggcatacg atgcagtatt ttgcatgagg tttgatttta
    24181 agtctttcta tggcgatttc ttcatcgcaa gattcgcata ttccataagt gccatctttg
    24241 attttttcta aagaatcttc tatttcttct aattcttgtt ttaaattagc actgatagca
    24301 aaatcaattt gcgatcctgt ttcaataaca gaaaaatcca cactatcact tgggacgcta
    24361 ttatgtaagg cttcaatttc tttagaattg ctttgcaaat tttccaatat agtttttttt
    24421 ctattttcta agatagtttt aaaaacttgt atttcattct ttttcattgt ttaacctttt
    24481 atttgtgata aggatgattt gagttgatac aaaaagcacg ataaatttgt tctaaaagta
    24541 aaatttttac aaattgatgt gctaaggtga gtttgcttaa agaaagtcta aaatctaaac
    24601 tctggctgaa ttcatccctt aagccgtaag caccacctat aaaaaaattt aaattatttt
    24661 tatctgctat gagttttgca aattctatgc ttgtaagctc cttgcctctt tcatcaagaa
    24721 ctatgcaaaa gccttttgta taaggagcaa atgcctcttc atagcttaat ttagcagctt
    24781 gtgcatttaa attttgcgca gcagctattt ttttattaaa gagattgtgt tctttaagat
    24841 ctgcaaattt ggagataagt tttgcgtact tctcacccca aattttaaat tcatcgtttt
    24901 tttgtatgtg aaaaatatta acttgcaagt tattttccac aaaagaattt aagagtatcg
    24961 ttaaggtatt ttttcatatc tgaacgctct actattgcat ctatgagtcc atgttcgagt
    25021 agaaattcag ctttttggaa gccttcgggt aaatctgcac ctatggtttg tttaatcact
    25081 cttgctcctg caaaacccac caaagcgcct ggttcagcga tgattaaatc tccaagccaa
    25141 gcgaaagaag cgctcacgcc tcccatagta ggatcggtta atacgctgat ataagggagt
    25201 ttttctttgc ttaaaagttt taaagcagcg cttgttttac tcatttgcat caaagaataa
    25261 gtactttctt gcattctagc tccaccgctt gcacttacga taacaacagg agttttatct
    25321 gtgatagctc tttggattgc cctaacgatt ttttcgcctt ctacagagcc taaagatcct
    25381 cccatgaaag aaaaatcaaa caccacaagc tgaattttaa gtccatctat aagacattct
    25441 ccgctaatga ctgcagactt tctaccggtt ttgctttcgc cttcgctcaa gcgtttttta
    25501 taagacttgc tgtcaacaaa tttgagcgga tctatggctt ctaaatttgc atcatactca
    25561 acaaaggtat tttcatcact taaaagcttg attctatcca taggagaaat tctcatatga
    25621 taagagcatt tagggcatac attaaaacaa gattctattt ctttataata cattaaagca
    25681 tggcaactct ggcattttac ccaatgattt ggagcctctt tggtgctagg ttgttgtctt
    25741 ctgatttttg aaaaaatatc tgcaaaattc ataataattc acctaattat tttaaaaatt
    25801 ccaagattat atcaaaaatt ttcttatctt tacttatgag aaggaaattt tcattgtttt
    25861 ctatatataa atttttacac aacatcaaag ctcctgcagt atcaaagatt cgagtttttc
    25921 ctaaaactaa aacaaagcta aaatatggag cataagcaat gcttaaagct gtagcgccca
    25981 aagagcgaaa tttaagctta ttttgtgcaa ggtggttgat aagacttggg caaagcgtta
    26041 ttttttctac gattccaatt tgagaaaaat gattaggcaa aaaaggagaa tagttaggat
    26101 tgaaaagatt tgattttaaa tttttattat catcaaaaat taaaatttca tgatttgcta
    26161 gattgcaaat aaaagcactt tgagcttctt catctttaaa aagtgctgca gatgttccat
    26221 aaaagggtat tttagaaaca aaatttgaac ttccatctaa gggatcaaga atgattttat
    26281 aaggactatt ttctccgatc aagccacttt cttcggaaaa aatttgacct aggttgcaaa
    26341 ggtgctctat aaagattttt tcacatttta gatcaagctt atagctttga ttattatcaa
    26401 agccaagttc gggacaaaag ctaagatcgc tttcgcaaat attgttaaga tactcgctaa
    26461 tttgcaaatt tgcttttagg caagcatcta gaaattgttt cattaaaagc gtgttcctag
    26521 gttaaattca aaagtattgg tatcatcacc ttttttatcg ttgagtggtt tagcaaatac
    26581 aagttgcaat ggcccaatag gagtgatcca ttctatacct aaacctgtac tcattctttg
    26641 aatttcatca agatttttat ttcctatcat cccataatca aaaaatacac taccgcgaag
    26701 tttaattcta tcgattaaag gaaagctaag ctctacagaa tttgcaaaag ctatagttcc
    26761 acccacttca tctccccatt catttttagg gcttacagtt ctactttcaa aaccgcgaag
    26821 agagcgaata ccacctaaat agattctttg attgattgga agatagcctt catcccaaac
    26881 tttataaaaa cttgctttat aacgataaat aagatcataa cctatataat cttgcaaacc
    26941 ttgataaaag ttaaattttg aactcgatga aaggaattct tgatctcctc caagtcctgc
    27001 atattctaag cttgttgaag cgataatacc ttttcttggg agataataat catcagtgtt
    27061 gttaaaagta atagcaggag tgatagagct ttttatagtt ttgccaagct cataacctgt
    27121 tcttaaaagt gttgggctta gatgatagat atcactttgc tcaagattgt aagttaaact
    27181 tacattataa tatcttgcaa attgacgacc tagggtgata tcaaaaccgt aatttttttc
    27241 agagtaatta tcccattcat aatcattaga ataaagcgtt ccgcccaagc tgtattgact
    27301 atcaagaatg cgtggattta taagactgat tctccctgat agggtatcat cacttttatc
    27361 tacactcaca gaacttttaa tacctgaacc aaaaatattg gtatctgata atgaagcatt
    27421 gagtaacaaa ccatcgcttg aaccatagcc aatgcctcct gaaatagcac ccgtagaagc
    27481 ttctttaaca ttgacgatta aatctatatg tgtatcatct actttttctt ctttaatttc
    27541 tacatcatca aaataagaag ttcttcttaa agcatttgta gattcactta aatcggtgcg
    27601 attgtataaa tttccttcgg tgatataaag ttcgcgacgt actactctat cgaccgtgcg
    27661 agaatttcca gaaatgataa catttcttat atagacttta tcgtgaggaa tgaccttaaa
    27721 tacaacgcta gcttcttggg tttgatcatt tttttgaata tcaggataaa cctctgcaaa
    27781 agcatagcct aaatcagcac tttgtgtttc tatggttttt acatctttgc gaatgtcttc
    27841 tatattgata agtttgcctt gggttgagcg taggtttttt acattttgta tattttcttc
    27901 ctcgctaaat aaaggatttt ctatacttat actctcaatt ttataaggct tgccttcttt
    27961 gataaaataa gtcagattgg cctgataagt atcggtatag gttttaagat aaggcgagga
    28021 tacttgtaca tcaagatatc cttttttcat gtactcatcg ctgattcttg cgctatcatt
    28081 gcttaattca aaaattttga gctttccatc atttcttccc cacatccagc ccataaattc
    28141 tttttcttta ttgactatac taggctcgat atctgaatat gaaaattcct ttgctccact
    28201 taaattaaca ttgttaataa cgatattttc tccgcgattg actataaatt caagctctag
    28261 tccttcggta ttttctagag tcttttttct gtattctact atggtatcaa aatagctttt
    28321 agcctcataa taagctttga tgcgttcgct tgcttcttta gcgcttgctt catcaaataa
    28381 agttcctctt tttataccca aaatgctctc tacttgtttt ctatcattag atgcaattcc
    28441 tgtaatgctt attttagcta tgcttggttt ttctgtgaca atgatattta aaataccatt
    28501 attttcctct acggcaatat tttcgaaata attttgttta taaaggttaa gtatggcggt
    28561 attgatttta tcaagattta ttgtttcgcc gatttttaat cctgtaagat ttaaagcact
    28621 tgcatttgaa agatgattta atccgttaaa tttaatttct ttaattactg ctgcattgct
    28681 tagtgcaact aaggcacaaa tgctgatgat ttttttcatt tatttttacc taaagcttta
    28741 ttaaaaattt gtataatagc agaaaaaatt taacaaagag attgagataa tattatgaaa
    28801 gtagcaatta tagggcttgg attgataggg ggttctttag gactttgttt aaaggaaaat
    28861 aaattaattt cttgtgtgta tggtttagat tcaagcaagg aaaatgagca agatgcttta
    28921 aatttaggac ttgttcatga gcttatagaa tttgaaaatt tgcatttgtg cgatatgatt
    28981 tttatcgcaa cgcctgtaaa tgctatcata gagattttac aaaaattagt aaatttgcct
    29041 tcaaatacaa ccattataga gcttggaagt acaaaaagaa aaatcataga aaaattgcct
    29101 gcaaagctta ccaaacaaac tctttttgcc catcctatgg caggaactga aaacagcggc
    29161 ccaaaagcgg cttttaaaga gctttataag gatgctgttt gtgtgttgtg tgatagtgaa
    29221 gtggctgatg atttgcacca aaaaagagca gtagaaattt tttcgcattt gggtatgagg
    29281 attgttttta tggatagcac agctcatgat catcatgccg ctattatttc gcatttgccg
    29341 catgtgatta gtttttcttt agcaaatttt gtgatgaaag aagaagataa aagaaatatc
    29401 gttcatttag cgggtggttc ttttaagggt atgagtagga ttgctaaatc atctcctatt
    29461 atgtggggga gtatttttga acaaaacaaa gataatgttt taagttctat tgaatttttt
    29521 caaaaagaat tagaattttg caaaaagatg attgaagagg ataaaaatga agaattaaag
    29581 tcttggatgc aaaaagccaa tactt
//
LOCUS       DBBXRO010000007        27739 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.007, whole genome shotgun sequence.
ACCESSION   DBBXRO010000007 DBBXRO010000000
VERSION     DBBXRO010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27739
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.007"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(68..143)
                     /locus_tag="ACJFEZ_000209"
     tRNA            complement(68..143)
                     /locus_tag="ACJFEZ_000209"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(108..110),aa:Met,seq:cat)
     gene            complement(175..249)
                     /locus_tag="ACJFEZ_000210"
     tRNA            complement(175..249)
                     /locus_tag="ACJFEZ_000210"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(215..217),aa:Gln,seq:ttg)
     gene            356..1375
                     /locus_tag="ACJFEZ_000211"
     CDS             356..1375
                     /locus_tag="ACJFEZ_000211"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HGG0916359.1"
                     /translation="MKFVSIEQAIKDLQEGKMLVMVDAEDRENEGDLIFPAQFSTKEK
                     VNFMIKEARGVVCVALAEELARKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RDMTIKIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCHLAGLKQACV
                     ICEIVKDDGDMARRSDLEEFCTKHNLNMIAVSDIIEYRLKNESLIKLQEKSDAILAGF
                     KAQKFIFTDHNNAQHIAFAFKEIQKCENVKFHISGSDFELLTSDKFSKLLDQIRFLSE
                     NGGVIVFMQGEKSSVTQFKNYGIGAQILRYFGIEEIKLMSQSCDKDYIGLKGFGLNLK
                     ICNFN"
     gene            1392..1835
                     /locus_tag="ACJFEZ_000212"
     CDS             1392..1835
                     /locus_tag="ACJFEZ_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HGG0916360.1"
                     /translation="MNLKEQILNDIKEAMKQKDDFKRDTLRTLNAAFKQVEVDERIEL
                     SDERILKIIASEIKKRKDAIELYSKGGREDLAQKEQKEIALFESYLPQQLSDEELQAA
                     LKEMIANLGVSSLKDQGLVMKEAKAKFGARVDGKRLNVTLRELLN"
     gene            1913..3613
                     /locus_tag="ACJFEZ_000213"
     CDS             1913..3613
                     /locus_tag="ACJFEZ_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HGG0916361.1"
                     /translation="MRKISGSAMICEALKEENVKIVFGYPGGAALNIYDEIYLQKYFK
                     HILVRHEQAAVHAADAYARMSGEVGVAVVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIAKSGRKGPVHID
                     VPKDVSAALGIWDYPKEISMKTYKPIYKGNSKQIKKLAENLEEAKRPLFYLGGGCIAS
                     NAANEIRELVKITQIPAVETLMALGTLRSDDELNLKMAGMHGSYTANMALSECDLLVA
                     IGARFDDRITGKTSEFAKHSKIVHIDIDPSSISKIINAHFPIVGDIKEVVKELLEELK
                     KNQFKSNIHEWRQTLKRYDELYPLAYEDSDEVLKPQWVIQECAKLAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYENGIKTINIILNNSFLGMVRQWQSMFYEEHFSATDLSLQADFIKIAEGFGCE
                     GYNIKTKDEFRTAFKQALESNKTSLLNVFIDRFEDVLPMVPAGGAIYNMILPKLKDKQ
                     "
     gene            3610..4074
                     /gene="ilvN"
                     /locus_tag="ACJFEZ_000214"
     CDS             3610..4074
                     /gene="ilvN"
                     /locus_tag="ACJFEZ_000214"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HGG0916362.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLLGGEFS
                     RINIVTFGDERVFEQIVKQLHKLIPTYKVIERDEFIEKEMALVKIPLSENLGGLDAVL
                     KAYNGTIANSNENFLFLLVADDTNRIENFLKTIKKYNPSDIVRSGSVLMELK"
     gene            4071..5024
                     /gene="lpxD"
                     /locus_tag="ACJFEZ_000215"
     CDS             4071..5024
                     /gene="lpxD"
                     /locus_tag="ACJFEZ_000215"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HGG0916363.1"
                     /translation="MRLKEIAEFLSLEYEGEDIEITALNSLLRANFTELTYCDGERNI
                     KDIPNTGAAAILVAKEYENLVPKDTKALITQSPHLCFAFLSKIFAKPLFSNAKEKVQN
                     IAKSAKIMPNVYIGNNVNIGENVVIMAGAYIGDNVSIGEESIIHPNVVIYNDSKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVILEDFVEIGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCDIGQNCIIVAQTGISGSSELGRNVVMGGQSATSGHLRIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAMKFKE"
     gene            complement(5027..6052)
                     /gene="queA"
                     /locus_tag="ACJFEZ_000216"
     CDS             complement(5027..6052)
                     /gene="queA"
                     /locus_tag="ACJFEZ_000216"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HGG0916364.1"
                     /translation="MKDLLLSSYDYTLPNELIATYPVHPKEDAKLLVFEQKNNQISHT
                     TFKNLQDFLPDCALFFNDTKVIKARIYGNKSSGGKIELFLHQPCLDSQDSLFLAQIKG
                     RVKKDEILSFEQNLKAKVIELLDDGLRKVQFFQNDEVLNTFKLYELLDTIGHVPLPPY
                     IKRSDEKSDLEDYQSIFAKNLGAVAAPTASLHFSENMLENLKKRHEIYHLTLHVGAGT
                     FKSVECENLENHKIHSEFFDIPKKACEVIDSQKKILGVGTTVTRTIEYYARTKQNQGF
                     CDLFLHPHNPPLRQDYLLTNFHLPKSTLIMLVSAFIGRQNCLKLYDIAIKEKYRFYSY
                     GDAMLIL"
     gene            complement(6049..6795)
                     /gene="tatC"
                     /locus_tag="ACJFEZ_000217"
     CDS             complement(6049..6795)
                     /gene="tatC"
                     /locus_tag="ACJFEZ_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HGG0916365.1"
                     /translation="MFEELRPHLIELRKRLFISVACVIVMFIVCFAFRSYILDVLKAP
                     LIQALPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFIVVPLAFKFLINFGLSEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLAIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDEEKEESDK"
     gene            complement(6796..7200)
                     /gene="tatB"
                     /locus_tag="ACJFEZ_000218"
     CDS             complement(6796..7200)
                     /gene="tatB"
                     /locus_tag="ACJFEZ_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HGG0916366.1"
                     /translation="MSFGEIIVILIVAILVLGPDKLPEAIVQIAKILKALKRNIDDAK
                     SSIEKEVRINDLKEEAKKYKDEFSSANENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RENSTPSPNEQNPNENQKPELNPFENQEKVEK"
     gene            complement(7263..8330)
                     /gene="hemW"
                     /locus_tag="ACJFEZ_000219"
     CDS             complement(7263..8330)
                     /gene="hemW"
                     /locus_tag="ACJFEZ_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HGG0916367.1"
                     /translation="MHLYIHIPFCESKCHYCAFTSLKKHDYENRYFEALYEDISFHLQ
                     KLNIKKNSIKTLFIGGGTPSAVSAKNFEMILTLLEPFLSKNIEFSSEANPNSADIEWL
                     KTMKNLGLNRISFGAQSFHPKKLEFLGRIHDQKMIFKALENVNKLGFKKINLDLIYDT
                     KLDDKKMLEFELEQLKQIKNLITHLSAYNLTIEPLSAFAKKEHFKKNAPYLMKFFIQE
                     LQNLGFLQYEISNFAKNNAQICKHNLAYWKGLDYLGCGLSAVSCYKNERFYTAKNLKS
                     YLQNPIFRDVEKLNQEDLNLEHLFLGLRSIVGIKECKLSKIQKEKANLLAREKKLKFE
                     KGRYYNLNFLISDELALYLSS"
     gene            8425..8895
                     /locus_tag="ACJFEZ_000220"
     CDS             8425..8895
                     /locus_tag="ACJFEZ_000220"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HGG0916368.1"
                     /translation="MEKEKKYRPNVAAIVLSSAYPFECKLFIAKRSDMDNIWQFPQGG
                     IDEGEDPKSAVLRELKEEIGTDEVEIIAEHPEWLSYDFPEKVAKKMYPYDGQSQKYFL
                     VRLKHGAKININTKHPEFDAYQFVGVKQVFEIINHFKRNIYVKVIKYFEEKGYI"
     gene            8895..10097
                     /locus_tag="ACJFEZ_000221"
     CDS             8895..10097
                     /locus_tag="ACJFEZ_000221"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HGG0916369.1"
                     /translation="MLIVQKYGGTSVGTLERIDAVAERVIKSAKEGHQLVVVVSAMSG
                     VTNTLIEQAEYFSKNPNGKDMDMLLSSGERVTSALLSIALNERGYPSLAFSGRKAGII
                     TDSVSTKARISYIDTQAITKALNEGKIVVVAGFQGVDKEGDVTTLGRGGSDLSAVAVA
                     GALKADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVKLVTRSSFNDNEGTMITKEDGMEQALVSGIALDRNQARVTLRNIEDKPGIAAE
                     IFSVLADENINVDMIIQNVGVDGATNLGFTVPQNELDLAKNAMQKILGSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            10098..10631
                     /locus_tag="ACJFEZ_000222"
     CDS             10098..10631
                     /locus_tag="ACJFEZ_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004292099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HGG0916370.1"
                     /translation="MSDFLSFTLENIRNGGTFMAWMESRRLEWAPLMAARLRYLLEGR
                     TFVLMCDEQRAWYEEYFLANINSKTTRPMLPFVSLKSLCKKKIQNIEDIALLNDLLDI
                     SFPNGFIYFYIGSASDKKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDVKLITLY
                     KLFDTSLDAILFSKVSL"
     gene            10631..11242
                     /locus_tag="ACJFEZ_000223"
     CDS             10631..11242
                     /locus_tag="ACJFEZ_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HGG0916371.1"
                     /translation="MFVSKIIITDDFDGIRAELLKQFHPNSLRFIPKEVASEFLIDDA
                     KAVEKESYIAETSEKIIVLMANSFRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPT
                     IKSRLICEKRNKIKAKNTLNLELNKMDLKTLFEFLQENENLDKAELMEKVALIAEESV
                     KFKDFNADELEFFYESYELAKLNSKSSLILATLLLNYYTKNEK"
     gene            11239..12381
                     /gene="folP"
                     /locus_tag="ACJFEZ_000224"
     CDS             11239..12381
                     /gene="folP"
                     /locus_tag="ACJFEZ_000224"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HGG0916372.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTQIHFILIKDIA
                     TPAANILKQDALRVGAELITHKEVITAKITYSNALLMATKEQIQKLINKEKLQDFGLK
                     NLARFLENDFSKPKQAELMAVINVNEDSFNADSRVSYKDFEERLNEILALNPEYIDIG
                     AVSSRPKSVYCGKEEEFRRLKNVLDLIYDKNYYEKAIFSLDSFDEYCLEYALNKGFKF
                     INDISSLRNLNLAKLASKYNAKYCLMHMQNDPLTMQDDPRYDDLLDEMSSFFKEKLEI
                     LDTLGVKESILDVGIGFGKSAEHNMILIKHLEHFLQFKKPLLIGASRKSVINAYYESE
                     VKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFAMANAMQSIGV"
     gene            12382..14322
                     /gene="ligA"
                     /locus_tag="ACJFEZ_000225"
     CDS             12382..14322
                     /gene="ligA"
                     /locus_tag="ACJFEZ_000225"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HGG0916373.1"
                     /translation="MTKKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVLEIDNIPKTINYKEKIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFIKLCANLDEVLKAYNELLSLRDKKPMMMDGMVV
                     RVDDLALCKELGHTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVIVKSATLHNFDEIARLGVCINDEVSVIRSGDVIPKITKVFKIRNNLRTKIIKPT
                     VCPECLSELLDEGAFLKCQNLDCKARLVNSIIHFVSKKCLNIDGLGESIVELLFKEKK
                     ITTLESIFHLKFSDFEGLEGFKEKKINNILNAIEQARDCELFRFITALGIEHIGEVAA
                     KKLALSFGKEWHKQSLEAYANLEGFGEQMALSLCEFSRVNSARIDEFYKLLNLKEQKV
                     QIQEDSVIFGKTFVITGALSRPRDEFKNLIESLGGKVSGSVSKKTDYVLFGQEAGSKL
                     DKAQELGVKCIDENEFNELIEK"
     gene            14303..15307
                     /locus_tag="ACJFEZ_000226"
     CDS             14303..15307
                     /locus_tag="ACJFEZ_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916374.1"
                     /translation="MSLLKNNIQLFVLLSIFAFLFFWQKFAWVSLFLIPIFLAFFLEF
                     FYFLRLRKNIIKEATMIKDSLIYRVSAGDFYIYSLSFFMALFALASLFLNLISFEKQD
                     GFFLFVLLPLFLFFFKQKLQLQFLDNAYNDFRIIILSSLILALLYAIFNGVVNPIQSF
                     NLEDFNQSIIYYKNSKFFIFDLISQILTLINALKEYFLYSLGLFWFRVLNFIFDFINF
                     FIFCSFVAYLYNFAFKAKKKTYVFVFSFFITLASFFIIEDKNQNPKAYQKELVLMMNN
                     LSFLKEQNLSMLQNDKDRLVKNLKQVQELLDKNAFEIGIWWFSKEKEELQKALNESLQ
                     "
     gene            15304..16053
                     /locus_tag="ACJFEZ_000227"
     CDS             15304..16053
                     /locus_tag="ACJFEZ_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HGG0916375.1"
                     /translation="MRYDIFVAKRLNLSRNKALELIENEEILLNSKPYKASFDVQNLL
                     KNKIADQEELLNSKELNLELLGELYVSRAAFKLKYFLENHNINIANKTCLDIGSSTGG
                     FVQILLEHKALKVSALDVGDNQLHPSLRDDKRIEIIENTDLRTFKSEQKFDFITCDVS
                     FISLAYLLSYIDNLALKDIVLLFKPQFEVGKQAKRDKKGVLKDEKAVFKAMREFENAC
                     ARLGWILQCCEESKIKGKEGNIEYFYYYTKK"
     gene            16022..16858
                     /locus_tag="ACJFEZ_000228"
     CDS             16022..16858
                     /locus_tag="ACJFEZ_000228"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HGG0916376.1"
                     /translation="MNIFTTTLKNNIKTLAIGCFDGVHLGHRKLIECLDDSGALLIID
                     KFKGKKLCTNQDKAFLAQKEIIELDFENIKALDGKDFLQALKEEFVNLERIVVGFDFS
                     FGKNRSYKAKDIEALSGIKTTIIDEFKLDGVGVHASLIKEYLTQGDIKKANSFLGRNY
                     AIKGKLIKGQGLGSKELFATLNLECEEYFLPKNGVYASIVSFHNKRYKSVSFVGVRSS
                     DMQFAIESHIIEKFDESLAIGEVLELEFVEFLRENQKFNDLAQLKEQISKDINQAKEC
                     LG"
     gene            16862..17566
                     /gene="cmoA"
                     /locus_tag="ACJFEZ_000229"
     CDS             16862..17566
                     /gene="cmoA"
                     /locus_tag="ACJFEZ_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HGG0916377.1"
                     /translation="MKDELFKEKLTKQFEFDKSVASVFDDMINRSVPFYRENLELCAN
                     LIKKLTKEGAKVCDLGCSSANFLIFLASLRKDLKLFGADNAPSMLEIAKSKAQAYGLN
                     IEFFEANLCDFVFFQSDVFVANYTLQFIRPPKRQELVNEIYKNLNKGGIFIMSEKILY
                     EDAFLSKNMIELYADYKERQGYSKIEIAAKREALENVLIPYSEKENLDMLKNAGFEKI
                     ESVFKWVNFETFIAFK"
     gene            complement(17570..17788)
                     /locus_tag="ACJFEZ_000230"
     CDS             complement(17570..17788)
                     /locus_tag="ACJFEZ_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HGG0916378.1"
                     /translation="MNKAILLTLICLFFTACEQTKSVEYYKAHPEEAKKRSDECRLKS
                     IISQDCVNAHSVAIPKEDWDEGHDTQTR"
     gene            complement(17867..18499)
                     /locus_tag="ACJFEZ_000231"
     CDS             complement(17867..18499)
                     /locus_tag="ACJFEZ_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HGG0916379.1"
                     /translation="MEISALTITILYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIVLICLCALVATKIPRIVSRLESLFLTLDAIGL
                     VVFSILGAQIAIEQNHGFIIAISAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGVIYYTLMVYLQLHALICTLVTLFVGVTARLLAIKYQWSLPIFSYNEEK"
     gene            complement(18509..19159)
                     /locus_tag="ACJFEZ_000232"
     CDS             complement(18509..19159)
                     /locus_tag="ACJFEZ_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HGG0916380.1"
                     /translation="MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFY
                     TNCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFEDDTNIPKKYRSTWSDYKNSGYTR
                     GHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
                     LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF"
     gene            complement(19156..19782)
                     /gene="nth"
                     /locus_tag="ACJFEZ_000233"
     CDS             complement(19156..19782)
                     /gene="nth"
                     /locus_tag="ACJFEZ_000233"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HGG0916381.1"
                     /translation="MKRNSEIKELFLKHFDKPTTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPELFKAYPDITSLANANLSSLKTYIQSCSFYNNKAQNLIKMAQSVRENFNAEI
                     PLDEEKLKSLAGVGQKTAHVVLIEWCGANCMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRIFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELE"
     gene            19865..20686
                     /locus_tag="ACJFEZ_000234"
     CDS             19865..20686
                     /locus_tag="ACJFEZ_000234"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HGG0916382.1"
                     /translation="MRKVSLIAAALIAGVTLNLNAATIATVNGKNISDTEVSEFFAPM
                     LRGEDFKSLPDHQKKALLQQYIMQDLILQDAKKQNLEKDPLYKKELERAKDSILVNVY
                     QEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKGLKGK
                     ALDDKFSQLAQEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDLLNNAKVEYK"
     gene            20686..21750
                     /gene="fbaA"
                     /locus_tag="ACJFEZ_000235"
     CDS             20686..21750
                     /gene="fbaA"
                     /locus_tag="ACJFEZ_000235"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HGG0916383.1"
                     /translation="MGLLDIVKAGVVSGDELNKVYEYAKAQGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPQGDVLGAISGAKHVHLLAKAYGIPVILH
                     TDHAARKLLPWIDGLIEANAEYKKTHGQALFSSHMLDLSEEDLEDNLSTCETYLKKLD
                     SLGISLELELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKEKFGLEVDKPINFVFHGGSGSELKDIKDAVSY
                     GVVKMNIDTDTQWAFWDGVREYEAKNREYLQGQIGNPEGEDKPNKKYYDPRVWLRSGE
                     ESMIKRLELAFEDLNCIGRN"
     gene            21849..23303
                     /locus_tag="ACJFEZ_000236"
     CDS             21849..23303
                     /locus_tag="ACJFEZ_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HGG0916384.1"
                     /translation="MDIRSDEISELILPESKEKKGYLVYLKIIFIPALLYVFILLGYY
                     DIINFKVELHTVVMIGFIFFTALVFARHSSEYAYSIFEQQKDEFKQALKRHIMKHFLT
                     IGKDTKSNANFDDFAYAYVRGARNENFASIGAAIFPMMGILGTFISIALSMPNFSSSD
                     TAALEQEIALLLSGVGTAFYVSIYGIFLALWWMFFEKFGKSKIERLLNRQKNSTSGFF
                     WTKEELDQRYLSESLQHFEKISAIFKQVSNQDFFAELDHTIDRKFGIFQDMLNVEEKA
                     IRLSGEHIKQTMGELSRAQRDQRDLGKMYGEMLNGIGMLNQNLKEINMRMSEQYNRLL
                     DISSEKIQHFDKTLLAFDEKVDRFGKNFELYEKAILESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDKLKQEIKNLNEETNEVMAKIGKIPNPAQEEQDNIENEILSS
                     EKITENTEQTKENQNDSDTLDSNKNFNKEEKEDK"
     gene            23300..24250
                     /locus_tag="ACJFEZ_000237"
     CDS             23300..24250
                     /locus_tag="ACJFEZ_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HGG0916385.1"
                     /translation="MKNEQEEGNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDLR
                     EIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLINSQKAELEANITNY
                     EQLSKELNSSIDNKDKQILILLGQLEKKDEEIRNLQESFDKAKEKVQNLSLIRENLSK
                     ELQAKLDSNITIDQKTGSISLPSEVLFDKDSYTLKNEAKASLRKILSEYFNAIINDPK
                     ILSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKDIRLQKLLMASGRSF
                     SDPVLVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            24260..25129
                     /locus_tag="ACJFEZ_000238"
     CDS             24260..25129
                     /locus_tag="ACJFEZ_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HGG0916386.1"
                     /translation="MLISPIEKIQFQGFEFYIKRDDLLGEINGNKARKLAFYLSQNYN
                     QSQRFISYGGIQSNALVALSIFASKRNLTLIYACEKIPTYLRNNPCGNYKLALENNVY
                     FIENHSDKDLKTFALSLCEKDDVFIEQGVANLNAESGYIQLAKEIESQSKNLGLDFDI
                     FLPSGTGTSAAFLAKNSKFKVFTCACVGDECYLKTQILNLIKNYDFSNLEILKSDKKY
                     HFSKLYLEFYQLYKDLKQECQIEFDLLYDMLGLSIALKREWKNPLLYIHQGGISGNSS
                     MLERYIFKYCKDK"
     gene            complement(25131..25586)
                     /locus_tag="ACJFEZ_000239"
     CDS             complement(25131..25586)
                     /locus_tag="ACJFEZ_000239"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HGG0916387.1"
                     /translation="MKKIVFVCLGNICRSPMAEFVMKDLVKKANLEKEFFITSAGTSG
                     EHDGENMHYGTQNKLKSLNIKYQNFTSKKLTQALCDESDFLITMDNSNFKNVQKNYKN
                     TQNKLLKITDFASHLGYDEVPDPWYSGNFDETYQIISLACKNLLSHLQK"
     gene            25640..26824
                     /locus_tag="ACJFEZ_000240"
     CDS             25640..26824
                     /locus_tag="ACJFEZ_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0916388.1"
                     /translation="MENFNRTLWVCWFGVFTTSMGLSQIAPILPLYIKELGHTDTSEI
                     AFYSGLAFGITPLGMAIFSPLWAYLGAKYGYKNMLLRASLGMSALTLWLSFAHDAMEV
                     VLIRGLTGIVSGFTAAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGVAAGI
                     FSISVVFDLVAFLLACSFVTIFLFIHERKIQKEAKKNTQEFKENKKLIVIIFITTFII
                     QFGTFGVMPILSLYVEQIYQGENLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKV
                     IFSALIFCGICFYLQSLATNVYALIFVRLLIGIGLGGLLPCVNALLKKGVSAKNLSLV
                     FGFNQTCQFLGNFCGAFGGGLITAHFSVELVFAFICCIFILNAIIFLIFERNYIFSNQ
                     GL"
     gene            26845..27501
                     /locus_tag="ACJFEZ_000241"
     CDS             26845..27501
                     /locus_tag="ACJFEZ_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HGG0916389.1"
                     /translation="MELILLSLIVILLVFVIIKQFKNSSKIEEKDIHISNDITQLKSI
                     GELSVFQVFSKEIVTKKDSAFNGIWKSILGWSLSERQIALIFEFEITFLYDLRDKNFE
                     IIVLDNDHYKIIMPECKYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGLSFSENDKNK
                     LIREAKEEVKELSLNLIRNLESKIHKSARDTLEAIAKGFGAKKVEFEFKDNTQKLDIN
                     "
     gene            complement(27498..27707)
                     /locus_tag="ACJFEZ_000242"
     CDS             complement(27498..27707)
                     /locus_tag="ACJFEZ_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxymuconate tautomerase family protein"
                     /protein_id="HGG0916390.1"
                     /translation="MPFVNIRITKENGEPTSEQKQELIAGVTDLLAKVLNKNKASTVV
                     IIDEIDTDNYGLGGKSITQVRKEKS"
BASE COUNT         9714 a         3640 c         5138 g         9247 t
ORIGIN      
        1 ataaaattct agaaaattaa aataaatcat ttttgcatat ttaagattta aagttatgga
       61 taagttttgg ttgcgaaggg gagatttgaa ctcccgacct tcgggttatg agcccgacga
      121 gctaaccact gctctacttc gcgacaatca aatttgtgtt tgaagtttag ttcgtggatg
      181 gggtaaaggg attcgaaccc ctgaatgaca ggaccaaaac ctgttgcctt accgcttggc
      241 gataccccaa tatttaattt ttaaaaagta aaaacgagat tataatcaat tttaatttat
      301 ttgtcaagca aatgaagtta taattttaaa aaaaataata ttttaaggat tataaatgaa
      361 gtttgtaagc attgaacaag caattaagga tttacaagaa ggaaaaatgc ttgtaatggt
      421 agatgcagaa gatagagaaa atgaaggaga tttgattttt ccagctcaat ttagcactaa
      481 agaaaaagta aattttatga taaaagaagc tagaggggtt gtgtgtgtag cactcgcaga
      541 agaacttgca agaaaatttg aacttccttt gatggtgccc aaaaatactt caaatcatga
      601 aacagccttt acaatcacag tggatgcaaa agatgcaact acaggtgtaa gcgcttatga
      661 aagagatatg acgataaaaa tttttgcaga cgataatgca aaagcgagtg attttgtacg
      721 ccctggacat ataaatcctt tgatagccaa aaaaggcggt gttttagagc gcacaggcca
      781 tacagaagga acggttgatc tttgtcattt agcagggctt aaacaagctt gcgtgatttg
      841 tgagattgtt aaagatgatg gagatatggc aagaagaagt gatttggaag aattttgcac
      901 taagcataat ctaaacatga tagctgtttc tgatatcata gaatatcgct taaaaaatga
      961 aagtcttatt aaattacaag aaaaaagtga tgctatttta gcaggtttta aagcacaaaa
     1021 attcattttt acagatcata ataatgctca gcatatagca tttgcattta aagaaattca
     1081 aaaatgtgaa aatgttaaat ttcatattag cggaagtgat tttgagcttt taacctctga
     1141 taaattttct aaattattag atcaaattcg ttttttgagt gaaaatggag gagtgatagt
     1201 ttttatgcag ggtgaaaaat caagtgtaac tcaatttaaa aattatggta taggtgcgca
     1261 aattttaaga tattttggca tagaagagat taagcttatg tcgcaaagtt gtgataagga
     1321 ttatataggc ttaaaaggct ttggtttaaa tcttaaaatt tgtaatttta actaaaataa
     1381 aaggatatat aatgaattta aaagagcaga tattaaatga tatcaaagaa gcgatgaagc
     1441 aaaaagatga ttttaaacgc gatactttaa gaacgctaaa tgccgcgttt aaacaggtcg
     1501 aagtagatga aagaatagag ctaagtgatg aaagaatttt aaaaattatc gcaagcgaga
     1561 ttaaaaagcg caaagatgct atcgagcttt attctaaagg tggaagagag gatttggcac
     1621 aaaaagaaca aaaagaaata gcactttttg aaagttattt acctcagcaa ttaagcgatg
     1681 aggaattgca agcagcttta aaagaaatga ttgcaaattt aggggttagt tctttaaaag
     1741 atcaaggttt ggtgatgaaa gaagcaaagg ctaaatttgg agcaagggtg gatggaaaaa
     1801 gattaaatgt aacacttaga gagcttttaa attaaaattt tcaaactttt ttatatttta
     1861 tctaaataaa agattgaatt attgttataa tttgattttc aaaggaggcc ttatgagaaa
     1921 aataagcggt tcggcaatga tttgcgaagc tttaaaagaa gagaatgtta agatagtttt
     1981 tggttatcct ggtggagcag ccttaaatat ttatgatgaa atttatttgc aaaagtattt
     2041 taagcatatt ttggtgcgtc atgagcaagc tgctgtacat gcagccgatg cttatgcaag
     2101 aatgagcggt gaagtgggtg tagctgttgt tacaagcgga cctggtttta ctaataccat
     2161 cacaggactt gcgacagctt atagtgattc tatacctttg gttttgattt caggtcaagt
     2221 tgcaaattca ttaataggca ccgatgcttt tcaagaaatt gatgcggtag gaatttctcg
     2281 cccctgtgta aaacataatt atttagtcac ttgcatagaa gaatttccaa gaatattaaa
     2341 agaggctttt tacatagcaa aaagtggaag aaaaggtcct gtgcatattg atgtaccaaa
     2401 agatgtaagt gcagcccttg gtatttggga ttatccaaaa gaaatttcaa tgaaaactta
     2461 taagcctatt tataaaggaa attcaaaaca aattaaaaaa ttggctgaaa atttagaaga
     2521 agctaagcgt cctctttttt accttggagg cggatgtata gcatcaaatg cggctaatga
     2581 gatcagagaa cttgttaaga ttactcaaat tccagccgtt gaaaccttaa tggctcttgg
     2641 aactttaaga agtgatgatg agctaaatct taaaatggca ggaatgcatg gaagttatac
     2701 agctaatatg gctttgagtg aatgtgattt attggtagca ataggcgcgc gttttgatga
     2761 taggattaca ggtaaaacaa gtgaatttgc caagcattct aaaatagtgc atattgatat
     2821 agatccaagt tctatttcta agattatcaa tgcgcatttt cctatagttg gagatattaa
     2881 agaagttgtt aaagagcttt tggaagaatt gaaaaaaaat caatttaagt caaatatcca
     2941 tgagtggagg caaactctta agcgttatga tgagctttat cctttagctt atgaagatag
     3001 cgatgaggtt ttaaaacctc aatgggtaat acaagaatgt gcaaaacttg ctccagatgc
     3061 aaggataatc actgatgtag gacaacatca aatgtgggtt gcacaatttt atccttttaa
     3121 ttacccaaga cagcttgcaa ccagtggcgg acaaggaacg atggggtatt ctttacctgc
     3181 tgctttgggt gcaaagcttg cggtaggaga agaagttgtt ataaattttg tgggtgatgg
     3241 ttctgtttta atgaatattc aagaactgat gacagcttat gaaaatggta ttaaaaccat
     3301 aaatattatt ttaaacaatt cattcttggg aatggttcgc caatggcaaa gcatgtttta
     3361 tgaagagcat ttttcggcta cagatttaag cttgcaagca gattttataa agatagctga
     3421 aggttttgga tgtgaaggat ataatataaa aacaaaagat gagtttcgca cagcattcaa
     3481 gcaagcttta gagtccaata aaacaagctt gcttaacgta tttatagatc gctttgaaga
     3541 tgtgcttcct atggtgccag cgggtggggc tatttataat atgattttac caaaattaaa
     3601 ggataagcaa tgagacgtgt tttatcggtt atagttttaa atgaacatgg tgtgctttct
     3661 cgtatcgtag gacttttttc aggtagggga tataatatcg atagcttaac cgtcgctcct
     3721 ttactaggtg gagaattttc tcgtatcaat atagttactt ttggagatga gcgtgttttt
     3781 gagcaaatag taaagcagtt gcataaactt atacctactt ataaggtaat agaaagagat
     3841 gaatttatag aaaaagaaat ggcgcttgta aaaattccac tcagtgaaaa tttaggtgga
     3901 cttgatgccg ttttgaaagc ttataatggt actattgcaa atagcaatga aaattttctt
     3961 ttcttgcttg tagctgatga tacaaatcgt atagaaaatt ttctaaaaac aattaaaaaa
     4021 tacaatccta gcgacattgt tcgcagtgga tcggttttaa tggagcttaa atgagattaa
     4081 aagaaatagc ggaattttta agtttagaat acgaaggcga agatatcgaa ataacggctt
     4141 taaattcttt attgagggcg aattttaccg agcttactta ttgtgatggt gaaagaaata
     4201 ttaaagatat acccaacaca ggagcagcag cgattttggt tgctaaagaa tatgaaaatt
     4261 tagtgcctaa agatacaaaa gctctcatta ctcaaagtcc gcatttgtgt tttgcttttt
     4321 tgagtaaaat ttttgctaaa cctttattta gcaacgcaaa agaaaaagtt caaaatatag
     4381 caaaaagtgc aaaaatcatg ccaaatgttt atataggcaa taatgtcaat ataggcgaaa
     4441 atgttgtcat tatggcagga gcttatatag gagataatgt tagcataggc gaagaaagca
     4501 ttatccatcc taatgtggtg atttataatg atagcaaaat tggcaaaaaa tgtcatctac
     4561 ttgcaaattg cgtaatagga agcgatggat ttggttatgc gcacaataaa aatggagagc
     4621 attataaaat ctatcacaat ggtaatgtta tcttagaaga ttttgttgaa ataggagctt
     4681 gcacaacaat agatagagca gtgtttgata gcactatcat taaagcagga acaaaagtag
     4741 ataatcttgt ccaaataggt cataattgcg atataggaca aaattgcatt atcgttgcac
     4801 aaactggaat ttcgggttca agtgagcttg gacgcaatgt ggttatgggt ggacaaagtg
     4861 caacgagcgg ccatttaaga ataggggatt ttagcactat tgcagcacgc ggtggtgtga
     4921 gtaaaaatct tgaaggcggt agggtttatg ggggttttcc tataatgctt caaaaagatt
     4981 ggcttaaact tcaagcaaaa attgctatga aatttaaaga ataaatttat aaaataagca
     5041 tagcatcgcc ataagagtaa aaacgatatt tttcttttat ggcaatatca taaagcttaa
     5101 gacaattttg cctgcctata aatgctgaaa ccaacataat cagagttgat tttggtagat
     5161 gaaaattagt taaaagatag tcctgtctta agggcgggtt gtgaggatgc aaaaaaagat
     5221 cgcaaaagcc ttggttttgt ttggttcttg cgtagtattc tatagtcctt gttactgtag
     5281 tgcctacgcc taaaatcttt ttttgggaat caatcacttc acatgccttt ttaggaatat
     5341 caaaaaattc actatgtatt ttgtgatttt ctaaattttc acattctaca cttttaaaag
     5401 ttcctgcacc aacatgcaaa gttaaatgat aaatttcatg tctttttttt aaattctcaa
     5461 gcatattttc actaaaatgt aagctagctg taggagctgc tactgcccct aaatttttag
     5521 caaaaatact ttgataatct tctaaatcac ttttttcatc acttcttttg atatagggag
     5581 gcaagggcac atgtcctatt gtatcaagga gttcataaag cttgaaggta tttaaaactt
     5641 catcattttg aaaaaattgc accttgcgta agccatcatc taaaagttct ataaccttgg
     5701 cttttaaatt ttgttcaaaa gataaaattt catctttttt aacacgccct ttaatttgtg
     5761 ctaaaaaaag cgaatcttgt gaatctaaac agggttgatg taagaaaagt tctatttttc
     5821 caccgcttga tttatttcca taaattcttg ctttaatcac cttagtatca ttaaaaaaga
     5881 gagcacaatc aggtaagaaa tcttgtaaat ttttaaaagt agtatgagaa atttgattat
     5941 ttttttgctc aaaaactaag agtttagcat cttctttagg atgcacagga taagtagcta
     6001 taagttcatt gggtaaggta taatcatagc ttgaaagaag taaatctttc atttatcgct
     6061 ttcttctttt tcttcatctt ttggagcagg atttactttt tgaacgatta aaatagaaag
     6121 tccataaagt ccgcaaagtg gcccagccat taaaaattga gataagacat caggtggagt
     6181 cataaaggct gaaaatacaa agatagctaa aacagctatg cgaaaatggc gttttaagaa
     6241 actatcatca ataagtccaa ttttagcaaa gaaaaatgct ataacaggca tttcaaaagc
     6301 caagccaaaa gcaacaacta cttttgtaaa aaagtccaca taagttccta tggtgattac
     6361 aggattaaaa tcttcactta agccaaaatt gattaaaaat ttaaaagcca aaggcactac
     6421 aataaaatag caaaagcaag cccctaaagc aaacataatg cttgcaaagc ttacaaaagg
     6481 cactacaaga cgcttttcat tatcataaag acctggagct acaaatttcc aaaactgcca
     6541 aaaaataaca ggtaaagaaa agataaaagc agcaaaaaag cttaccttca tagctgtaaa
     6601 taaagcctct tgaacttcga taacattgac atgtttagct acttcgggta aagcttgaat
     6661 aagaggtgct tttaatacat ctaagatata gctacgaaaa gcaaaacata ctataaacat
     6721 tacaatcaca caagcaacgc taataaaaag acgctttcta agttctatta aatggggtct
     6781 taattcttca aacatttatt tttctacttt ttcttgattt tcaaatggat tgagttcggg
     6841 tttttgattt tcatttggat tttgttcgtt tgggctaggg gtggaatttt ctctgctatc
     6901 aaaagtcaaa tccactttag ttttatccaa aatatctctt tttaaatcat caaattcttc
     6961 aaaactaagt tttttacgga tgttttcatt tgcacttgaa aattcatctt tgtatttttt
     7021 agcttcttcc tttaaatcat tgatacgaac ttctttttct atgcttgatt ttgcatcatc
     7081 gatattgcgt tttaaagcct ttaaaatttt tgctatttgc actatggctt caggaagttt
     7141 atcaggccct aaaactaaaa ttgctactat taaaattaca ataatttcac caaaactcat
     7201 aaacaatact cttaaaaatt tgaaatttta taaaaggaac attttactta aaaaagttga
     7261 atttaagatg agagatataa ggcaagctca tcgctaatta aaaaattaag attataataa
     7321 cgcccttttt caaatttgag ctttttttct cttgcaagca aattagcctt ttctttttga
     7381 attttactta atttgcattc tttaataccc actatacttc ttagtcctaa aaataaatgt
     7441 tctaaattca aatcttcttg atttagtttt tcaacatctc taaatatagg gttttgaaga
     7501 taggatttta aatttttagc cgtataaaaa cgctcatttt tatagcaact taccgcactc
     7561 aaaccacaac ctagataatc caaacccttc cagtaggcta aattatgttt gcaaatttgg
     7621 gcattatttt tagcaaaatt gctgatttcg tattgtaaaa atccaagatt ttgaagttct
     7681 tggatgaaaa atttcattaa atagggtgcg ttttttttaa aatgttcctt ttttgcaaaa
     7741 gcactcagtg gttctatggt aagattataa gcacttagat gagtgattaa atttttaatt
     7801 tgttttaatt gttcaagttc aaattcaagc atttttttat cgtctaattt tgtatcataa
     7861 atcaagtcta aattaatctt tttaaatccc aatttgttca cattttctaa tgctttaaaa
     7921 atcatttttt gatcgtgaat tcttcctaaa aattccagct ttttaggatg aaagctttgt
     7981 gctccaaaag agatacgatt aagccctaaa tttttcattg ttttaagcca ttctatatcg
     8041 gctgaattgg gattggcctc gcttgaaaat tctatatttt tacttaaaaa aggttctaaa
     8101 agtgttaaga tcatttcaaa attttttgca ctaacagcac ttggggtgcc tcctcctata
     8161 aagagggttt taatgctgtt ttttttgata tttaattttt gcaagtgaaa agaaatatct
     8221 tcatataaag cctcaaaata cctattttca taatcatgtt tttttagact cgtaaaagca
     8281 caataatggc atttgctttc gcaaaaaggg atatgaatat ataaatgcat aaaaacctta
     8341 aaatttataa tgttattttc ttattttaat gaaattttga tttcatttag gttaaaatta
     8401 taagcttaaa attgaaggaa aaaagtggaa aaagaaaaaa aatatagacc caatgtcgct
     8461 gctattgttt tatcaagcgc ttatcctttt gagtgtaagc tttttatagc taaaagaagc
     8521 gatatggata atatttggca gtttccacaa ggtggtatcg atgagggaga agaccctaaa
     8581 agtgctgtat taagagagct taaagaagag attggcacag acgaagtgga aatcatagct
     8641 gagcaccctg aatggttgag ttatgacttt ccagaaaagg ttgctaaaaa aatgtatcct
     8701 tatgatggac aaagccaaaa atatttttta gtacgattaa aacatggcgc taaaattaat
     8761 attaatacaa aacatcctga atttgatgct tatcaatttg tcggagtaaa acaagtgttt
     8821 gaaatcataa atcatttcaa aagaaatatt tatgttaaag ttattaaata ttttgaagag
     8881 aaaggttata tttaatgctt atagttcaaa aatatggcgg aacaagtgtc ggcactttag
     8941 aacgcattga tgcagtagca gagcgtgtca taaaaagtgc aaaagaggga catcaacttg
     9001 tggttgtagt ttcagcgatg agcggagtta caaatacttt aatagagcaa gcagaatatt
     9061 ttagcaaaaa tcctaatggc aaagatatgg atatgctttt aagtagtggt gagcgcgtaa
     9121 cgagtgcttt attgtctatt gcactaaatg aaaggggata tccttctctt gctttttcag
     9181 gaagaaaggc aggaattatt acagatagcg tttctacaaa ggctagaatt tcttatatcg
     9241 acactcaagc aatcaccaag gctttaaatg aaggaaagat agttgttgta gcaggctttc
     9301 aaggagttga taaagagggt gatgttacaa ctttagggcg tggcggaagt gatttgagtg
     9361 cggttgctgt tgcgggagct cttaaggcgg atttatgtga aatttatacc gatgtggatg
     9421 gagtttatac tacagatcca aggattgaac caaaggcaaa aaaacttgat aaaatttctt
     9481 atgaagaaat gcttgaactt gctagtttgg gggctaaggt tttacaaaat cgctcggttg
     9541 aacttgcaaa aaaattaaat gtaaaattag ttactagaag tagttttaat gataatgagg
     9601 gtacaatgat aacaaaagaa gatggaatgg aacaagcttt agttagcggt attgctttag
     9661 atagaaatca agcaagagta actttaagaa atatagaaga taaaccaggg attgcagctg
     9721 aaattttttc tgttttagcg gatgaaaata tcaatgtaga tatgatcata caaaatgttg
     9781 gggtagatgg agctacaaat ttaggattta ccgtgcctca aaacgagctt gatttggcaa
     9841 aaaatgctat gcagaaaatt ttaggttcta agacaactat agaaagtgat agtgctgtgg
     9901 ttaaggtttc tatagtgggc gtgggtatga aatcacattc gggtgtagca agtaaagcct
     9961 ttaaagcttt ggcggatgag ggtattaata taggtatgat ttctacaagc gagattaaaa
    10021 tttcaatgat tgtacatgaa aaatatggcg agcttgcggt aagagccttg catgagtgct
    10081 atggacttga taaataaatg agcgattttt taagttttac acttgaaaat atccgcaatg
    10141 gcggaacatt tatggcttgg atggagtccc gtcgtttaga atgggctcct ttaatggccg
    10201 caagattaag atacctttta gaggggcgaa cctttgtttt aatgtgtgat gaacaaaggg
    10261 cttggtatga agaatacttt ttagcaaata taaattccaa aactactcgc cccatgcttc
    10321 cttttgtgtc tttaaaatct ttatgtaaaa aaaagataca aaatatcgaa gatatagcct
    10381 tgcttaatga tttacttgat atttcgtttc ctaatggctt tatttatttt tatataggaa
    10441 gtgcaagcga taagaaatca ttaatcgcta aatcacgcga cgatagtctt ttatggcttt
    10501 ttgatgagca attgcaagat agtttttatt tgaattccaa agataaagat ttggatgtca
    10561 agcttatcac tctttataaa ctttttgata cgagtttgga tgcgatttta ttttccaaag
    10621 tgagtcttta gtgtttgtaa gtaaaattat catcactgat gattttgacg gtattagagc
    10681 tgaactttta aaacaatttc atcctaattc tttgcgtttt atacctaaag aagttgcaag
    10741 tgagttttta atcgatgatg ctaaggcagt tgaaaaggaa agttatatcg cagaaacaag
    10801 tgaaaaaatc attgttttaa tggcgaattc ttttaggata gaagctcaaa attttttact
    10861 caagcttctt gaagagccac caaaaaatat caaatttctc atcgtagttc cttctaaaaa
    10921 tttacttttg cccactataa aatcgcgtct tatttgtgaa aaacgcaaca aaataaaggc
    10981 taaaaatact ttaaatttag aacttaataa aatggattta aagactttgt ttgagttttt
    11041 acaagaaaat gaaaatttag acaaagcaga attaatggaa aaagttgcat tgattgcaga
    11101 agaaagtgtt aaatttaaag attttaatgc cgatgaactt gaattttttt atgaaagtta
    11161 tgagcttgcg aaattaaatt ccaaaagctc tttgatactg gctacgcttt tattaaatta
    11221 ttatacaaag aatgaaaaat gaaatttttt aaaatcaatc caaacactga ttttaactta
    11281 ctttgctctt ttataaatcc tcataaaatg gggcaaaaaa ttatgagtga aaaaactcaa
    11341 attcatttta ttttgattaa agatatagct actcctgcgg caaatatttt aaaacaagat
    11401 gccttaaggg tgggagctga gcttataaca cacaaggaag tcatcactgc taaaatcaca
    11461 tattctaatg cacttttaat ggccacaaaa gaacaaattc aaaaacttat aaacaaagaa
    11521 aaacttcaag attttgggct taaaaattta gctaggtttt tagaaaatga tttttcaaaa
    11581 ccaaagcaag cagagcttat ggcggttata aatgtcaatg aagatagttt taatgctgat
    11641 tctagggtga gttataaaga ttttgaagaa agattaaatg aaattttggc cttaaatccc
    11701 gagtatattg atataggagc ggtaagctct aggccaaaaa gcgtgtattg tggtaaggaa
    11761 gaagagttta gaagacttaa aaatgtgctg gatttaattt atgataaaaa ttattatgaa
    11821 aaagccattt ttagtttgga tagttttgat gaatattgct tagaatacgc tttaaacaaa
    11881 ggctttaaat ttatcaatga tatcagcagc ttaagaaatc tgaatttagc taaacttgca
    11941 agcaaataca atgcaaaata ctgccttatg catatgcaaa atgatccttt aaccatgcaa
    12001 gatgatccaa gatatgatga tttgcttgat gaaatgagta gtttttttaa agaaaaactt
    12061 gaaattttag atactttagg agtgaaagaa agcattttag atgtgggaat tggctttggc
    12121 aaaagtgcag aacacaatat gattttaatc aagcatttag aacatttttt gcaatttaaa
    12181 aagcccttgc ttataggagc aagtcgcaaa agtgtgatca atgcgtatta tgaaagtgaa
    12241 gttaaagatc gcttagcggg gactttgtat ttgcatttaa aggcttttga aaatggcgcg
    12301 agcattataa gggtgcatga tttatacgaa cataaacagc tttttgcaat ggcaaatgcg
    12361 atgcaaagca taggagttta aatgacaaaa aaagagtatt tagaaaaagt tgccttggct
    12421 gcttcttgga tgagggcgta ttatgaaaaa gatgaaccct tggctagcga tgaagaatac
    12481 gatgctttaa tcagagaatt aagagttttt gaagaacaaa ataaagatga aatttcaaaa
    12541 gactctccaa cgcaaaaaat agctcctact atacaaagcg agtttaaaaa aatagctcat
    12601 ttaaagcgta tgtggtcgat ggaagatgtg tttgatgaga gtgagcttag ggcttgggca
    12661 aaacgcgcaa aatgtgaaaa aaactttttt atagagccta aatttgatgg agcgagttta
    12721 aatttgcttt atgaaaatgg taaattagta agcggcgcca ctagaggcga tggcgaagtg
    12781 ggtgaggata taacgcttaa tgtgcttgaa atcgacaata tcccaaaaac tataaattat
    12841 aaagaaaaga tagaaattcg tggagaagtg gtgattttaa aagatgattt tgagaaaatc
    12901 aacgaaaaaa gagccctttt aaatcaaagt ttatttgcca atccacgcaa tgctgcaagt
    12961 gggagtttaa ggcagcttga tacaagtatc actaaagaaa gaaatttgaa attttatcct
    13021 tggggagtag gggaaaatac cttaaatttt accaagcaca gcgaagtgat gcaatttatc
    13081 agagagcttg gttttttaaa ggatgatttt attaagcttt gtgctaattt agacgaagtt
    13141 ttaaaagctt ataacgagct tttaagccta agagataaaa agcctatgat gatggatgga
    13201 atggtagtaa gagtagatga tcttgcgctt tgcaaagagc taggtcatac tgtgaaattt
    13261 ccaaaattta tggcagcttt taaatttcca gccttagaaa aaactacgcg tttaataggg
    13321 gtaaatttgc aggttggaag aagtggggtt atcactcctg tggcggtttt agagcctgta
    13381 aatttggatg gggttatcgt aaaatctgcc acacttcata attttgatga aattgcaaga
    13441 cttggagtgt gtatcaatga tgaagtaagt gtgataagaa gtggtgatgt gataccaaaa
    13501 attaccaaag tttttaaaat aagaaataat ttaagaacta aaattataaa acctactgtt
    13561 tgtcccgaat gtttaagtga acttttggat gaaggtgctt tcctaaaatg ccaaaattta
    13621 gactgtaaag caaggcttgt aaattccatc attcattttg tttctaaaaa atgtttaaat
    13681 atcgacggac ttggagaaag tatagtcgaa cttttattta aagagaaaaa aataaccact
    13741 cttgagagca tttttcatct caaatttagc gattttgaag gcctagaagg ttttaaagaa
    13801 aaaaagatca ataatatttt aaatgctatt gagcaagcaa gggattgtga gctttttcgt
    13861 tttattaccg ccttggggat cgagcatatt ggagaagtgg ctgctaaaaa gctagcttta
    13921 agttttggta aagaatggca taaacaaagt ttagaagctt atgcaaattt agaaggtttt
    13981 ggtgagcaaa tggctctttc tttgtgtgag ttttctcgtg taaatagtgc aagaattgat
    14041 gagttttata agcttttaaa tttaaaagag caaaaggtgc aaattcaaga agatagtgtt
    14101 atttttggca agactttcgt gatcacaggc gcgctttcac gccctagaga tgagtttaaa
    14161 aatctaatag aaagtcttgg aggtaaggtt agtggatcgg tttctaaaaa gactgattat
    14221 gtgctttttg gtcaagaagc aggttctaaa ctcgacaagg ctcaagagct gggtgtaaaa
    14281 tgtattgatg agaatgaatt caatgagctt attgaaaaat aatattcagc tatttgtttt
    14341 attgagtatt tttgcatttt tatttttttg gcaaaaattt gcttgggttt cgcttttttt
    14401 aatccctatt tttttagcat tttttttgga atttttttat tttttaaggc ttagaaaaaa
    14461 tatcataaaa gaagcaacga tgattaaaga tagtttgatt tatcgtgtga gtgcgggaga
    14521 tttttatatc tatagcttga gtttttttat ggccttgttt gcacttgctt ctttgttttt
    14581 aaatttgatc agttttgaaa aacaagatgg attttttttg tttgtactct tgcctttatt
    14641 tttatttttt ttcaagcaaa aacttcagtt gcagttttta gataatgctt ataatgattt
    14701 tagaataatc attttatcaa gcttgatttt agctttgtta tatgcgattt ttaatggggt
    14761 ggtaaatcct atacaaagtt ttaatcttga agattttaat caaagtatta tttattataa
    14821 aaactcaaag ttttttattt ttgatttaat ttctcaaatt ttaacactta taaatgcttt
    14881 aaaagaatat tttttatatt ctttggggct tttttggttt agggttttaa attttatttt
    14941 tgattttatt aattttttta ttttttgctc ctttgtggcc tatctttata attttgcttt
    15001 taaggcaaaa aagaaaactt atgtttttgt cttttcattt tttataactc tagcttcatt
    15061 ttttatcata gaggataaaa accaaaatcc aaaagcttat caaaaagagc ttgttttgat
    15121 gatgaataat ctttcttttt taaaagagca aaatttaagt atgcttcaaa atgataaaga
    15181 tagactagtt aaaaatttaa aacaagtgca agaacttttg gataaaaatg cctttgagat
    15241 aggaatttgg tggttttcca aagagaaaga agaattgcaa aaagccttaa atgaaagtct
    15301 tcaatgagat atgatatttt tgtagcaaag cgtttaaatc ttagcagaaa taaagctttg
    15361 gaattgatag aaaatgaaga aattttactt aattccaagc cttataaagc ttcttttgat
    15421 gtgcaaaatt tgcttaaaaa taagatagca gatcaagaag agcttttaaa ttctaaagaa
    15481 ttaaatttag agcttttagg cgagctttat gtttctcgcg cggcttttaa gctcaaatat
    15541 tttttagaaa atcataatat caatatagca aataaaacct gccttgatat aggttcaagt
    15601 acgggtggtt ttgtgcaaat tttattagaa cacaaggctt taaaagtaag tgctttagat
    15661 gtgggtgata atcaactcca tcctagttta cgcgatgata aaaggattga aattattgaa
    15721 aatacagatt taagaacttt taaaagcgag caaaaatttg atttcatcac ttgtgatgtt
    15781 agttttattt ctttagctta tttgctctcg tatatcgata atttagcttt aaaggatata
    15841 gttttgcttt ttaagcctca atttgaagtt ggcaagcaag caaaaagaga taaaaagggt
    15901 gttttaaaag atgaaaaagc cgtgtttaaa gctatgagag aatttgaaaa tgcttgcgcg
    15961 cgtttaggtt ggatcttgca atgttgtgaa gagtctaaaa tcaaaggaaa agagggtaat
    16021 attgaatatt tttactacta cactaaaaaa taatattaaa actttagcca taggatgttt
    16081 tgatggagtt catttaggac atagaaaact tatagaatgt ttagatgatt ctggagctct
    16141 tttgattatc gataaattta agggtaaaaa actttgtacc aatcaagaca aagcattcct
    16201 agctcaaaaa gagattatag agcttgattt tgaaaacatc aaagctttag atggtaagga
    16261 ttttttacaa gctttaaaag aagaatttgt aaatttggag cgtatagttg taggttttga
    16321 tttttctttt ggaaaaaata gaagttataa ggcaaaagat atagaagccc ttagtgggat
    16381 taaaacaacg atcatagatg aatttaagct agatggagta ggtgttcatg caagcttgat
    16441 taaagagtat ttgacgcaag gtgatatcaa aaaggcaaat tcttttttgg ggcgaaatta
    16501 tgcaatcaaa ggcaagctca taaagggtca agggcttggc tcaaaagagc tttttgcaac
    16561 tttaaattta gaatgcgagg aatatttttt acctaaaaat ggcgtttatg ctagcatcgt
    16621 gagttttcat aataagcgct ataagagtgt aagttttgtg ggtgtgcgct ctagtgatat
    16681 gcaatttgcc atagaaagtc atattataga aaaatttgat gaaagcttag ctataggaga
    16741 agttttggag cttgaatttg tagaatttct aagagaaaat caaaaattta acgaccttgc
    16801 ccaacttaaa gaacaaattt caaaagatat aaatcaagct aaagagtgtt taggataaaa
    16861 aatgaaagat gaacttttta aagaaaagct aaccaaacaa tttgaatttg ataagagtgt
    16921 cgcaagtgtt tttgatgata tgattaatcg ctctgtgcct ttttataggg aaaatttaga
    16981 actttgtgca aatttgataa aaaaattgac taaagaggga gcaaaggttt gtgatttggg
    17041 ttgttctagt gcgaattttt taattttttt agccagttta agaaaagatc ttaagctttt
    17101 tggtgcggat aatgcacctt ctatgcttga aatcgccaaa tcaaaagcac aagcttatgg
    17161 cttaaatata gaattttttg aagcgaattt gtgtgatttt gttttttttc aaagtgatgt
    17221 atttgtagct aattatactt tgcaattcat ccgtccgcct aaaagacaag aacttgttaa
    17281 tgaaatttat aagaatttaa acaaaggtgg tatttttatc atgagtgaaa aaattcttta
    17341 tgaagatgct tttttgtcta aaaatatgat agaactttat gcagattata aagaaagaca
    17401 aggttattct aaaatcgaaa ttgcagccaa aagggaggct ttggaaaatg ttcttatccc
    17461 ttatagtgaa aaagaaaatt tagatatgct taagaatgca ggatttgaaa aaatagaaag
    17521 tgtttttaag tgggttaatt ttgaaacctt tatagccttt aaataaaaat tatcttgttt
    17581 gtgtatcatg gccttcatcc caatcttctt ttgggatagc aacgctatga gcatttacac
    17641 aatcttgact gatgatagat ttcaaacgac attcatcact tctttttttg gcttcttcgg
    17701 gatgagcttt gtagtattct acacttttgg tttgttcaca agctgtaaaa aataaacaaa
    17761 taagggtaag tagtattgct ttattcatag tattttcctt aaaaagcata attaaacttt
    17821 tatcacgctt ctttttatct tagcaaattt ttataaatac aattcattat ttttcctcat
    17881 tataagaaaa aatgggtaag gaccattggt atttgatcgc taaaagccta gctgtaactc
    17941 ctacaaatag cgttacaagc gtgcaaatta aagcatgcag ttgaagataa accattaaag
    18001 tataataaat tacccctgct atgattgcga ttcctgcata aatttctttt tggaaaacta
    18061 aaggaattct catgcataaa atatctctta aaattccacc aaaaacacct gtaatcactg
    18121 ctgcagagat tgcgatgata aagccatggt tttgttctat tgcaatttgt gcgccaagta
    18181 tgctaaagac tacaagtcct atggcatcaa gcgttaaaaa taaactttct aatctgctaa
    18241 caatgcgtgg aattttagtg gcaacaagag cacaaaggca aattaaaaca atatattcag
    18301 gatgtttaac ccaagtaagt ggataatgac ctaaaagcac atcgcgtatg cttccacctc
    18361 ctatggcagt tactaaggct atgaaaatta ctccaaaaag atccatttta tgtctgcctg
    18421 cagccaaggc acctgtcata ccctctgctg aaattcctat aatgtaaagt atggttatgg
    18481 ttaaagcact gatttccatt catagccttt agaatttatt gcaagaaatt ttataatcat
    18541 tgatttcttc gctctggata ttgttattgg gtacttcata acattcttca aaccgagaag
    18601 ttttgataat cttaacataa gaactcggta tagcaatgcc atttttaata aatttaggat
    18661 ttttaccata aagtattaga tttagcactt caacgctttg gaatttaaaa gcaagacttc
    18721 tttctctttg ttcgatttca ttccaaaccg ttgcattaac ttgtgcattt tgtggagtga
    18781 tattactcat caaaaaaacc gatgtttgtg ctgctttact aaagcgaaaa gaagcatttg
    18841 aggctatatg tcctcgggta taaccactat ttttataatc actccaagta ctgcggtatt
    18901 ttttagggat atttgtgtca tcttcaaagc gagctcgttt tttgatctgt ttttctttta
    18961 gattggacgc ttcgacttta taggctacgg ctttagtgcc tttgagttta taatcataac
    19021 aattggtata aaaaaattta tccaaaacaa cagagcaatt taaaggatta aaataaggcg
    19081 caaaatcttt atcgggctta taagcttcta aagcaaaaac atgaagtgta aatgctaata
    19141 aaaagatgat aagtttcatt caagttcctt gtctttactt ttgcaaagat ggtttaaaaa
    19201 acattcttta catagaggtt ttttagcctt gcaggtatag cgtccaaaaa gcaccatggc
    19261 ttgatgaaga tagttaagat tgtctttaaa tatgcgtgtt aaatcctctt cagtcgcttc
    19321 aggagtctta gccttgctaa gtcctaagcg atgagaaaca cgaaaaacat gagtatctac
    19381 cgccatgcag tttgcaccac accattcgat caaaaccaca tgggctgttt tttgtcctac
    19441 tcctgctaag gattttaatt tttcttcatc cagtggaatt tcggcgttga aattttcacg
    19501 gactgattga gccattttga tgagattttg ggctttgtta ttataaaaag aacaactttg
    19561 tatataggtt ttaaggcttg ataaatttgc atttgcaaga cttgtgatat caggataagc
    19621 tttaaaaagc tcaggggtga taagattaac ccttttatcg gtgcattgtg cagaaagcat
    19681 cacacagact aaaagttcat agagatttga aaactttaat tctgtagtag gcttatcaaa
    19741 atgttttaaa aaaagttctt tgatttctga atttcttttc atttttttat tttaattaat
    19801 tagctttaaa ccaagttgag atataattga ttttaatcta ttttattaaa aaaggaagtc
    19861 taaaatgaga aaagtttctt taattgccgc agctttaatt gcaggtgtaa ctttaaattt
    19921 aaatgcagct actatagcta ctgtaaatgg taaaaatata agcgatactg aagtgagtga
    19981 attttttgca ccgatgctta gaggagagga ttttaaaagc ttgcctgatc atcaaaaaaa
    20041 ggctcttttg caacaataca tcatgcaaga tttgatacta caagatgcta aaaaacaaaa
    20101 tttagaaaaa gatcctcttt ataaaaaaga attagaacgc gcaaaagata gcatacttgt
    20161 taatgtttat caagaaaaaa ttcttaattc tattaaagtt gattcttcta aagttaaagc
    20221 attttacgaa caaaataaag aaaaatatat caaacctgct gcagttcaag ctaagcacat
    20281 tttagtatct agcgaacaag aagctaaaga tatcattaaa gaactcaaag gtttaaaagg
    20341 taaagcttta gatgataaat ttagccagct tgctcaagaa aaatcaatcg atccaggttc
    20401 aaaaaatcaa ggtggagaat taggttggtt tgatcaatca acaatggtaa aaccattcac
    20461 tgacgcagca tttgcactta aaaatggcac cattacaacc actcctgtaa aaacaaattt
    20521 tggctatcat gtaatcttaa aagaaaattc tcgtgcaaaa gaacaaatca aatttgatga
    20581 tgttaaaaaa ggcattgaaa atggtttgaa atttgaagaa tttaaaaaag tgatcaatca
    20641 aaaaggtcaa gatttgttaa acaatgctaa agtggaatac aaataatggg cttgttagac
    20701 atcgtaaaag caggggttgt tagcggagat gagcttaata aagtttatga atacgctaaa
    20761 gcacagggtt ttgctatccc tgccgttaat gtagtgggaa ctgattcgat caatgctgtt
    20821 ttagaagccg ctaaaaaagt aaattctcct gttatcatcc aattttctaa tggaggagcg
    20881 aaattttatg caggaaaaaa ttgtccacaa ggtgatgtat taggagcgat tagcggggct
    20941 aagcatgtgc atttgcttgc taaggcttat ggtatcccag tgattttaca tacagatcac
    21001 gctgctagaa agcttttacc ttggatagat ggacttatag aagcaaatgc tgagtacaaa
    21061 aaaactcacg gacaggcttt atttagctct catatgcttg accttagcga agaggattta
    21121 gaagataatc taagcacttg cgaaacatat cttaaaaaac ttgattcttt gggaatttca
    21181 ctcgaacttg aacttggttg cactggggga gaagaagatg gagtggataa tacaggtatt
    21241 gataattcta agctttatac ccagcctgaa gatgtagcac ttgcatatga aagacttggg
    21301 aaaatcagcg ataaattttc aatagcagcc agctttggaa atgtacatgg agtttataaa
    21361 ccaggaaatg taagtttaca acctgaaatt cttaaaaatt cacaaaaatt tgtaaaagaa
    21421 aaatttggcc tagaagttga taagccgatc aattttgttt tccatggtgg aagtggaagc
    21481 gaattaaaag atatcaaaga tgcggtgagt tatggtgtag taaaaatgaa tatcgataca
    21541 gatactcaat gggcattttg ggacggagtt cgcgaatatg aagcaaaaaa ccgtgaatat
    21601 ttgcaaggcc aaattggcaa tccagaaggt gaagataagc ctaataaaaa atactacgat
    21661 ccgcgtgttt ggctaagaag cggtgaggaa agtatgataa agcgtttaga acttgctttt
    21721 gaagatttaa attgtatagg aagaaattaa gcctttggct taaatcttcc aaattttatt
    21781 ttaaagattt tttaaattgc ttgataacaa tctttaaaat agaatttagc taatggggta
    21841 ttagtgttat ggatataaga tcggatgaaa tttcagaact cattctacca gaaagtaaag
    21901 agaaaaaagg atatttggtt tatttaaaaa ttatttttat acccgcttta ctttatgttt
    21961 ttattttatt gggttattat gatattataa attttaaagt cgaattgcac actgttgtta
    22021 tgataggctt tatttttttc acagcccttg tgtttgcaag gcatagttct gaatacgcat
    22081 acagcatttt tgaacaacaa aaagatgaat ttaaacaagc cttaaaaaga catattatga
    22141 agcattttct tactataggt aaggatacaa aatctaatgc aaattttgat gattttgctt
    22201 atgcttatgt taggggtgca aggaatgaaa actttgctag tattggtgca gctatttttc
    22261 ctatgatggg aattttagga acttttatca gtatagcctt gtctatgcct aattttagct
    22321 ctagcgatac agcagcctta gagcaagaga tcgctctttt gctaagtggt gtaggaactg
    22381 ctttttatgt ttcaatttat ggtatttttc tagctctttg gtggatgttt tttgaaaaat
    22441 ttggaaagag taagatcgag cgtttgttaa atcgtcaaaa aaattctaca agtggatttt
    22501 tttggacaaa agaagagctt gatcaaagat atttgagtga aagcttgcaa cattttgaaa
    22561 aaatcagtgc catttttaaa caagtaagca atcaagattt ttttgcagag cttgatcata
    22621 ctatagatag aaaatttgga atttttcaag atatgctcaa tgtagaagaa aaagctataa
    22681 gattgagtgg ggagcatatt aagcaaacta tgggtgagtt aagtagagca caaagagatc
    22741 aaagagatct tggaaaaatg tatggcgaaa tgctaaatgg tataggaatg cttaatcaaa
    22801 atttaaaaga aatcaatatg cgaatgtctg aacaatataa ccgccttctt gatatcagta
    22861 gtgaaaaaat tcagcatttt gataaaacct tgcttgcttt tgatgaaaaa gtagatcgtt
    22921 ttggtaaaaa ttttgaatta tatgaaaaag ccattttaga aagtcaagaa aaagtttttg
    22981 aaggttttaa agcaagtctt tttgagggta tgcataaatt taaagaagtt tatgaagaag
    23041 aaaaaagtat cgatgcgaaa atcaaaatga tggataaatt aaagcaagaa attaagaatt
    23101 taaatgaaga aacaaatgaa gtgatggcta aaataggtaa aattcctaat cctgctcaag
    23161 aagagcaaga taatatagaa aatgaaattc tttcaagcga aaagataact gaaaatacag
    23221 agcaaaccaa agaaaatcaa aatgatagcg acactttaga ttctaataaa aattttaata
    23281 aagaagaaaa agaagataaa tgaaaaatga gcaagaagaa ggtaattttt ggatagccta
    23341 tgctgacttg atggcagggc tactttttgt ttttatcctg ttaataggtg ctattgtagt
    23401 taaatacgtt ttaactcaaa gcgatctaag agaaattaaa gataatctta acaaacaaga
    23461 agcacgctta gaagaaagca aggaagagct tagaaataaa gaagctattg tttttaaatt
    23521 aagctctgat ttaaacaatg cttcaagtgc tttaaatctt ataaattctc aaaaagcaga
    23581 acttgaagca aatatcacta attatgagca attaagcaaa gagcttaatt catctataga
    23641 taataaagat aagcaaattt tgattttgct aggtcagcta gaaaagaaag atgaagaaat
    23701 tagaaatttg caagaaagct ttgataaagc aaaagaaaag gttcaaaatt taagtttgat
    23761 tcgcgagaat ctaagtaaag agctacaagc taaactcgat agcaatatca ccatagatca
    23821 aaaaacaggt tctatttctt taccttctga ggtattgttt gataaggatt cttatacgct
    23881 taaaaatgaa gctaaggcga gtttgagaaa aattttaagt gagtatttta atgctattat
    23941 caatgatcca aagattttgt ctaatattga aaatattatc attgaagggc atacggatag
    24001 cgatggatct tatatttata atcttgattt atcccaaaag cgtgcttatg aagtgatgaa
    24061 ttttatctat actttttata aggatataag attgcaaaaa cttttgatgg caagtggcag
    24121 atcgttttct gatcctgttc ttgtaaatgg agtagaggat aaagataaaa gccgccgcat
    24181 agagattaaa ttcagtatta aaaatgataa tgctttaaaa gatgttgaaa agttttttga
    24241 gtttcactaa gaattttaaa tgctaatttc tcctatagaa aaaattcaat ttcaaggatt
    24301 tgaattttat atcaagcgtg atgatttgct aggagagatc aatggaaata aagctagaaa
    24361 acttgctttt tacctttctc aaaattataa tcagagccaa cgctttataa gttatggtgg
    24421 cattcaaagt aatgctttag tagcacttag catatttgca agtaaaagaa atttaactct
    24481 tatttatgct tgcgaaaaga ttcctactta tctaagaaat aatccttgcg gtaattataa
    24541 attagccttg gaaaataatg tttattttat tgaaaatcat agcgataaag acttaaaaac
    24601 atttgcactt tctttgtgtg aaaaagatga tgtttttata gagcaaggag ttgctaattt
    24661 aaatgccgaa tcaggttata ttcaactagc caaggaaata gaaagtcaaa gtaaaaattt
    24721 aggtttagat tttgatattt ttctaccctc tggcacagga acttcggctg catttttagc
    24781 taaaaattcc aaatttaaag tttttacttg tgcttgtgtt ggagatgagt gctaccttaa
    24841 aactcaaatt ttaaatctta ttaaaaatta tgatttttcg aatttagaaa ttctaaaaag
    24901 tgataaaaaa tatcattttt ctaaacttta tctagaattt tatcagcttt ataaagattt
    24961 aaaacaagaa tgtcaaatag aatttgactt gctttatgac atgctaggat tgagcatagc
    25021 cttaaaaaga gaatggaaaa atcccttgct ttatatccac caaggaggaa tttctggaaa
    25081 ttcctctatg ttagaaagat atatatttaa atattgtaaa gataaatgat ttatttttgt
    25141 agatggctta aaagattttt acacgctaaa gaaatgattt gataggtttc atcaaaattc
    25201 ccactatacc atggatcagg gacttcatca tatcctaaat gagaagcaaa atcagtgatt
    25261 tttaaaagtt tattttgagt atttttataa tttttttgaa cattcttaaa attagaatta
    25321 tccatggtga ttaaaaaatc actttcatca caaagtgctt gagtgagttt tttgcttgta
    25381 aaattttgat attttatatt taagctttta agtttatttt gagtgccata gtgcatattt
    25441 tctccatcgt gttctcctga ggttccagca ctggttataa aaaattcttt ttctaaattt
    25501 gcttttttaa caagatcttt cataacaaat tcagccatgg gggaacgaca aatatttcca
    25561 agacatacaa aaactatctt tttcattttc atccttgaaa tttaattgaa aattataaaa
    25621 aatatcatac aataatttta tggaaaattt caataggact ttatgggtat gttggtttgg
    25681 cgtctttact acaagtatgg gacttagtca aattgctcca atcttgcctt tatatatcaa
    25741 agaattagga catacagata ctagcgaaat cgcattttac tcaggattag cttttggaat
    25801 cacaccactt ggaatggcta ttttttcacc tttgtgggca tatttgggtg caaaatacgg
    25861 ctataaaaat atgctacttc gagcaagttt aggaatgtca gctttaacgc tgtggcttag
    25921 ttttgctcat gatgctatgg aagtggtttt gatacgaggt ttaacgggta ttgtatcagg
    25981 atttaccgca gcagctgttg tttttatcgc tgtaatagca cccaaagaaa aagtagctta
    26041 tgctttgggg acactttcta ctgcatctat cagtgggagt ttgttaggtc ctttatttgg
    26101 tggagttgcg gcaggaattt ttagcattag tgtagttttt gatttggtag cctttttgct
    26161 tgcttgttct tttgtgacaa tttttctttt tattcatgag agaaaaattc aaaaagaagc
    26221 aaaaaaaaat actcaagaat ttaaagaaaa taaaaaactt attgttatta tttttatcac
    26281 aacttttatc attcagtttg gaacttttgg ggttatgcct attttaagtc tttatgtaga
    26341 acaaatttat caaggtgaaa atttggctct ttgggcaggt atagttgtag ctgcaagtgg
    26401 gattagcaac cttttctttg cgccaaaact tggaaaaata gcagataaaa tcggccctag
    26461 caaggttatt tttagcgctt tgatattttg tggaatttgt ttttatttac aatccttggc
    26521 taccaatgtt tatgcactta ttttcgtaag attgcttata ggaataggtc ttggaggact
    26581 tttgccttgc gtgaatgctt tgcttaaaaa aggtgttagt gctaaaaatt taagccttgt
    26641 atttggcttt aatcaaactt gtcagttttt aggaaatttt tgcggtgctt ttggaggagg
    26701 attgataaca gcgcatttta gtgtagaact tgtttttgct tttatttgct gtatttttat
    26761 tttaaatgct ataatttttt tgatatttga aagaaattat attttttcta atcaaggttt
    26821 ataattcttt agaaaggtga ttttatggaa ctcattttac ttagtttgat tgttattttg
    26881 cttgtatttg tcattataaa gcagtttaaa aatagctcta aaatagaaga gaaggacatt
    26941 catattagca atgatattac ccaacttaaa tccataggag agcttagtgt ttttcaagtc
    27001 tttagtaaag aaattgttac taaaaaagat agtgctttta acggaatttg gaaaagtatt
    27061 ttgggttggt ctttaagcga aagacagatt gctttgattt ttgaatttga gatcacattt
    27121 ttatatgatt taagagataa aaattttgaa atcatagttt tagataatga tcattataag
    27181 attattatgc ctgaatgcaa atacaagcac agcattatag atatgaaatt ttatgatgaa
    27241 aaaaatgcta aatttttgcc ttttttactg cctgattcta ttaatagcac aggacttagc
    27301 tttagtgaaa atgacaaaaa taaacttata agagaagcca aagaagaggt taaagaattg
    27361 tcattaaatc ttattagaaa tttagaaagt aaaattcaca aaagtgctag agatacttta
    27421 gaagctatag ccaaaggttt tggagcaaaa aaggtagagt ttgaatttaa ggacaatact
    27481 caaaagctag atataaacta gcttttttct tttcttactt gagtgatact ttttccacct
    27541 aagccgtaat tgtctgtatc gatttcatca atgattacta cggttgaggc tttgtttttg
    27601 tttaaaactt tagcgagtaa atctgtaact cctgcgataa gctcttgttt ttgttcgctt
    27661 gtaggttcac cgttttcttt ggtaatgcgt atatttacaa aaggcattta aaactccttt
    27721 atatattttt taataattt
//
LOCUS       DBBXRO010000008        27485 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.008, whole genome shotgun sequence.
ACCESSION   DBBXRO010000008 DBBXRO010000000
VERSION     DBBXRO010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27485
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.008"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            20..514
                     /gene="luxS"
                     /locus_tag="ACJFEZ_000243"
     CDS             20..514
                     /gene="luxS"
                     /locus_tag="ACJFEZ_000243"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HGG0916391.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
                     LENI"
     gene            830..1822
                     /locus_tag="ACJFEZ_000244"
     CDS             830..1822
                     /locus_tag="ACJFEZ_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family dioxygenase"
                     /protein_id="HGG0916392.1"
                     /translation="MNLPVLDLKIYEKDKSAFLKNLREVTSNVGFFYLINHGIDKNLN
                     EKLFKLSKDFFNLPRSSKELISMVHSPQFRGYTSEGFEYTAGEKDYREQIDIGTERKA
                     LKWDLNSPLWQRLEGPNLWPDEIPELKEIFLAWHEQTRNACLKILQAFAEALDLPSDA
                     FGKLYGENSYEHCKIIHYPKISKDASQGVGPHKDGGLITFVFQEEQNGLEAFIDDQWI
                     SVPPLEGSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFP
                     LNPELVQESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVARIYHSDLIEKFSFA"
     gene            1836..2606
                     /locus_tag="ACJFEZ_000245"
     CDS             1836..2606
                     /locus_tag="ACJFEZ_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0916393.1"
                     /translation="MTIFAKAFCIATLFTGFAWANEELKVGSSVVPHADILKFIKPTL
                     QKQGYDLKIYEFNDGVIPNIMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFQPKTGASISIPNNPTNESRALRIVASAGLIEIKDNELVTPLDIVKN
                     PKNLKFVELKDAQLTRSLDDVDYSLINSNFAILSGLNPIKDGLYTENKYSEYGNIIAV
                     KAGNEELDKIKALVKALQSDEVKNFIEEKYQGALIPTF"
     gene            2629..4893
                     /gene="metE"
                     /locus_tag="ACJFEZ_000246"
     CDS             2629..4893
                     /gene="metE"
                     /locus_tag="ACJFEZ_000246"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HGG0916394.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKAQSSKEELLETAKNLRAR
                     HWKDIQNAGIDFIPSNDFSLYDNVLDAAVLFNITPKRYKDLNLDPLDEYFAQSRGYQG
                     KNGDTIALAMKKWFNTNYHYLVPECDDASIIALSGDKIFKEYLEAKELGIETKPVLVG
                     IFTLFKLIAFKDENTKQLAKDKLLQAYIELLKKLNSLGVAWLELDEPYLVYDLNQEDI
                     ALFEEFYKELLKHKGEVKILLQSYFGDLRDIYTKLLESDFDALGLDFVEGKESLNLIQ
                     KHGFANDKILFAGIVNGKNIYANDYAKSLKLIKELQKYTQNIVINTSCSLLHVPYSTE
                     FETKLDSSYLKLFSFAKEKLKELQDLKAIINSNEENPLFKANQELFKNIPNRLDEKVK
                     ARLQTLKKEDFVRKPEFKERIQIQKEFLELPVLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSKKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALALRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKTKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLNLLDTLKAVNF
                     QTEVGPGVYDIHSPRVPSVEEISSTIEKILNKLPKEQIWINPDCGLKTRGYEEVVAAL
                     KNLVIATQKIREKL"
     gene            4903..5751
                     /gene="metF"
                     /locus_tag="ACJFEZ_000247"
     CDS             4903..5751
                     /gene="metF"
                     /locus_tag="ACJFEZ_000247"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HGG0916395.1"
                     /translation="MCSFSFEIFPPRRDENIKNLNAILDDLGQLSPNFISVTFGAGGS
                     INSKNTLETASLIQEEYKIPSIVHLPCIHSSKEKIISILQECKERQLDKILALRGDVC
                     NDLEKSKDFSYASDLISFIRKQGEFEIYAACYPEKHNESRNFIEDIHHLKNKVDAGTD
                     KLITQLFYDNEDFYTFKQNCALAGINIPIYAGIMPITNKRQVLKISQLCGAKIPPKFA
                     KILEKYENNTLALEDAGIAYAIDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKYLL
                     KEELHA"
     gene            complement(5761..5961)
                     /locus_tag="ACJFEZ_000248"
     CDS             complement(5761..5961)
                     /locus_tag="ACJFEZ_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916396.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKFHSFLYFFLGLLPGLLLS
                     LVFVCLIENYELKLKINQDKSK"
     gene            complement(5958..6638)
                     /locus_tag="ACJFEZ_000249"
     CDS             complement(5958..6638)
                     /locus_tag="ACJFEZ_000249"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HGG0916397.1"
                     /translation="MKDLFLFSSLLDSSHTFSYFFHLGLVALIAVICASMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGDEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRTQGFIKYFAHFMGPIKFLAPLMFPIEVVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATIVEEGH"
     gene            complement(6789..8129)
                     /gene="radA"
                     /locus_tag="ACJFEZ_000250"
     CDS             complement(6789..8129)
                     /gene="radA"
                     /locus_tag="ACJFEZ_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HGG0916398.1"
                     /translation="MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVL
                     KEIAQASTKASEAICIEDVELEHFSRCSTDDDELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTSEVGIFEMTFKGLISAK
                     DLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM"
     gene            8265..9116
                     /locus_tag="ACJFEZ_000251"
     CDS             8265..9116
                     /locus_tag="ACJFEZ_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HGG0916399.1"
                     /translation="MQKLLKVALIQFAPKSYEVQNNLDKALKLAHLALEQGARLIVLP
                     ELYDSAYCVEDQDEKFSLNLHQAHPNLDALQKLAKNYQAYIVACSIEKDTQLYDSAYI
                     ISHKGLLGVYRKIYLWGNEKERFTRGDKYPIFELEFENFKLKLGLQICYEIGFSEGSR
                     FLALQGAEIICFPSAFGKARTYVWDLASRSRALENGVFVLAANRSGSEISKINNETLT
                     FAGKSKIINPKGEIIKEILEEEGFIIAELDLEEVQIQRKNLPYLKDLNLKLNQEILTN
                     IHLNTKE"
     gene            9119..10000
                     /locus_tag="ACJFEZ_000252"
     CDS             9119..10000
                     /locus_tag="ACJFEZ_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase"
                     /protein_id="HGG0916400.1"
                     /translation="MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIP
                     RLLKLFKKYNIPATWFAPGHSIETFPEQMKMIVDAGHEIGAHGYSHENPIAMSAKQEE
                     DVLLKSIELIEKISGKKPSGYVAPWWEFSNITNELLLKHGIKYDHSLMHNDFTPYYVR
                     VGDKWTKIDYSKDAKEWMKPLVRGQETDLIEIPANWYLDDLPPMMFIKKSPNSFGFVS
                     PRDIGQMWIDQFDWVYREMDYAIFPMTIHPDVSARPQVLLMHERIIEHINKYEGVKWV
                     NLNDMADDFSKRFPRKK"
     gene            10042..10377
                     /locus_tag="ACJFEZ_000253"
     CDS             10042..10377
                     /locus_tag="ACJFEZ_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916401.1"
                     /translation="MCILCGEMISTLHWSELNFKEEKHELSVGEEQKERLRIRLKKVK
                     ILNEILEFYGLKLKEWQNSKYILSNKKGRDIIVNDLGDLWIKASELEKKSFDVLDENL
                     LHFLRAKHG"
     gene            10370..11314
                     /locus_tag="ACJFEZ_000254"
     CDS             10370..11314
                     /locus_tag="ACJFEZ_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HGG0916402.1"
                     /translation="MAKIPVHVVTGFLGSGKTTFLKEILTNQALNDIALVINELGEVS
                     LDHKLVQTDFIEEQTLFLNAGCACCNKREDLQKKFKELLDNFENKGKKPQRVILETSG
                     LANPAPIIFTFQSDVFLANHFELANIITCIDAFEGLNHLQNEEACNQILSSDFLILTK
                     KDLNPHTQSLEEKINTLYPNIQIISKENFNFDMLSSHHKIQREIKNIEIKSHKDDISS
                     ITLIFDKAINWNIFSIWLSMLLHEHGSKILRVKGLINTEESYLTNINGVGHLIYHPTH
                     TKISRLNHPSQLVFIAKNLKLDKIKESLENFLRLEQLN"
     gene            complement(11311..12177)
                     /gene="ftsY"
                     /locus_tag="ACJFEZ_000255"
     CDS             complement(11311..12177)
                     /gene="ftsY"
                     /locus_tag="ACJFEZ_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HGG0916403.1"
                     /translation="MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEI
                     VEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLDEKPFVELILGVNGAGKTTSIAK
                     LANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
                     ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNAGI
                     LQAKAFNELVQLDGVIITKLDGTAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQ
                     NFLDTLLEGVFD"
     gene            complement(12177..12734)
                     /locus_tag="ACJFEZ_000256"
     CDS             complement(12177..12734)
                     /locus_tag="ACJFEZ_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HGG0916404.1"
                     /translation="MKIKKVFTLAILLSFFVACSNDKEKDQSDMNASVQSSLSQSENL
                     RFNLNLIDGNSIFIKKDNENLNFADGDKATLFVFFTTWCSPCIAEIPHLNKLQEKYEE
                     QFNIVGVLLEDKSDEELRAFAQKNQILYKIANGENNYLLAKILGGVNGIPTMFLYDKN
                     SQLINQYLGLIPEEMLEIDIQKAIL"
     gene            12815..13441
                     /locus_tag="ACJFEZ_000257"
     CDS             12815..13441
                     /locus_tag="ACJFEZ_000257"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HGG0916405.1"
                     /translation="MQKTSFRTLQKNRLAQHKKLKFKQDFIVFKECFNLIKKTKAKNI
                     LIFIPLGYEPNLLKFRHIFSKNHKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPMDSF
                     LKTKIDIAIIPVIGVDRELKRIGHGQGFYDRFFENLNYKPLVIFAQSINAISEKKLTQ
                     EHDIAGEFYINPYKKYYKKDNKYDRITYRTYNRYSRSWNRIFSCKKNQ"
     gene            13362..14915
                     /gene="rny"
                     /locus_tag="ACJFEZ_000258"
     CDS             13362..14915
                     /gene="rny"
                     /locus_tag="ACJFEZ_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HGG0916406.1"
                     /translation="MIESLIALITAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEDKTHKIQKEFNQKFDELSKKEQKLQLQEESL
                     KENQEELLRSKKQMLDLQSDADKLKKQYQTKLNDVLNILEHSAGLTQDEAKNIILEKV
                     EENSRNEIAHIVRRYEEEARNEAKRKANYIIAQATSRFAGEFAAERLINVVNIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDNAILEEGETILMDLGLSKVHPEITKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLRRVSELEEIAK
                     SKEGIKNAYAINAGREIRVIANAKLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAIEYAK"
     gene            14926..15483
                     /locus_tag="ACJFEZ_000259"
     CDS             14926..15483
                     /locus_tag="ACJFEZ_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HGG0916407.1"
                     /translation="MQDMIDTLLKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLAL
                     CISIAFVANTLGSTLLFILGKYYKKDIMPYFKNHRRKLALAMMKTKQHGVVLLITQKF
                     VYGLKTFIPIAAGIAKYKFINFFIINTFASLLWAVLLGYSAYAFGFAIEAIFNKLSSY
                     PYIAPLFLIVLVGIIWFYLTKFSKK"
     gene            15483..16742
                     /locus_tag="ACJFEZ_000260"
     CDS             15483..16742
                     /locus_tag="ACJFEZ_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HGG0916408.1"
                     /translation="MSFWNSLYLNLKEFRYLFLFGFIVFVFNIFLEYNHFLNLKEKKH
                     YLVENALLLQYYPKHNKNNKKYWVLKLKTKDFILYTTSFKDLNLSKNQLLNLKIITNN
                     ISFKDYLGKSFYAPSYGFEVLGYLKNNTLISYFLNQHTNEKIQEFYGALFFALPISSE
                     LRNDVNHYGVAHLIAISGYHIGLLFTLVFFILAPLYSFFQKRYFPYRSLRFDLSIFIF
                     ILLFAYAYLIGFVPSYVRSLIMALWGFYLLCKNIKILSFFTLFISIYLCIVLYPRLLL
                     SIGFFFSCLGVFYIFLYLHHFSKLFNNFLNIILVNIWTFFCIITPVLYFFPLISYQQF
                     LAIILSGIFIVFYPLVLCLHFIAHGNLLDPVLIDFFNLKFYALNIKIPTWALISYLIL
                     SFIAMRYKILALFCIFANFIPFIMIMI"
     gene            complement(16686..17492)
                     /locus_tag="ACJFEZ_000261"
     CDS             complement(16686..17492)
                     /locus_tag="ACJFEZ_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HGG0916409.1"
                     /translation="MKRIFAILSNLRDKEILNYAAALSFYTILSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQIIFAFLIPAQQDIVAAYLDTFLNNSVNLGIVGLIAMTFTSLAFFS
                     GYDFVINRITKSEPKGLWQSISSYWTLLTLVPLGLGLSFYISGLIQKALDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSIQKGTLKSLIFVSFAAGAIWYIGKNLFVYYIVYNKTYA
                     SVYGSFSTILFFFIWIYISWIVYLFGIKIYYFLNHNHDKGDKIRKNTKKS"
     gene            complement(17504..18886)
                     /locus_tag="ACJFEZ_000262"
     CDS             complement(17504..18886)
                     /locus_tag="ACJFEZ_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HGG0916410.1"
                     /translation="MKKEFEQYFIKLLGSENAYFDDIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDISKILKFCNENNIIIIPRGAGSGFTGGALAVNGGLILSFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQREVAKHGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPNGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIVLPKF
                     KKTAFGIFPSVKSAMNAVYKSLASGVNPVSMEFLDNLSIRAVESKFNKGLPVDAGAIL
                     IADVDGNVKEAIDEDLKILGEHFLDAGASQFKIAKDEQEAADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPALLEGIDEISKKYGFKIPCFGHTGDGNVHTNIMVPDKNDEEQ
                     VKKGYEAVEEVFKLTVELGGTLSGEHGIGLSKAPFMKLAFSDAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(18883..19575)
                     /locus_tag="ACJFEZ_000263"
     CDS             complement(18883..19575)
                     /locus_tag="ACJFEZ_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HGG0916411.1"
                     /translation="MSLFAIDLNLKPVKMELLKVEDIYGYVEDSPDIKLNSSGVVIQR
                     FQTSKSIIARASVIAKEKGLAKLKFSVFADLEQDALPLPNVVPQKGNEVVLNFLYDRG
                     LVIAPDEQTYNELVFSFPEIYFTHIDMLGAQLIRSSSLAPKRSDFRKFCADNAVGILI
                     FALEDKAKIVDCQDFSELYELTISKPSSIQVPFYSRIGGYKSNFFDFNSQEVGNYYRY
                     YDALINIPKVSQ"
     gene            19735..20895
                     /locus_tag="ACJFEZ_000264"
     CDS             19735..20895
                     /locus_tag="ACJFEZ_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HGG0916412.1"
                     /translation="MKKLLLLFAFVIQSFAALSVEELTWDNGDTLLKFLQRNSIPISL
                     YYGLDREDQELASDIAYKVKYQVLKDENNNIEQVLIPISDDLQIHIYKDKNNQYTLAF
                     SPISYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRSFRGSVNFRNIQKGDKVTL
                     YYEQKRRMGKLWGDIAIKMAVVEINKNAQEVFAFNDIFYNRDGKEVEAFLLTKPVNYT
                     RISSTFSTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGTITFVGTKGGYGNVIQVK
                     HDSGYMTLYAHLSRFAKIKKGQKVNQGQLIGYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKEEFKSTIVKYEGIINEALAANKPNPPKEEDFENYIEF"
     gene            complement(20892..21098)
                     /locus_tag="ACJFEZ_000265"
     CDS             complement(20892..21098)
                     /locus_tag="ACJFEZ_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916413.1"
                     /translation="MYEKKDLRVLKIIQKAREFGDGDLLNEALVNQLVNAEFKEIESK
                     EREGLIALLNSLIEAKDKALLSNP"
     gene            complement(21103..21783)
                     /locus_tag="ACJFEZ_000266"
     CDS             complement(21103..21783)
                     /locus_tag="ACJFEZ_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HGG0916414.1"
                     /translation="MGRSGENCLSLLKNQKVSVFCAYDKDYNIFRAKVHKENLFSHLG
                     FKDIEKCVFMDQIHSNKVEIYDENLKNLSCDGLISIEKNTALCVLSADCLPLILWHES
                     GIIAALHSGRKGSFENILKECVDKIYTKNPNLDMQKFHLFILPSICAKNYEIDGEILE
                     FARVEFKDFLDERKLDLKALVKFQAQNLGIKNIIDSNICSFDDKTFYSYRRDKTLKRF
                     VSVVYLKG"
     gene            complement(21747..22358)
                     /gene="ribE"
                     /locus_tag="ACJFEZ_000267"
     CDS             complement(21747..22358)
                     /gene="ribE"
                     /locus_tag="ACJFEZ_000267"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004746 - riboflavin synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HGG0916415.1"
                     /translation="MFNGLIREIAKVKSYQNNVLNLKANYRPNLGDSVAVNGACLSVT
                     KLHSDGFELELSHESRKHIAVQNLKDKVHIEPALRYGDRIDGHLMQGHIDFIGRLEKI
                     EKDENGVDFYIALPKEAMKFMARKGSIGIDGVSLTINEIIENGVRLTIIPITFKETLF
                     KEYEIGREINIESDLLARYIYAQMQDKDKGLSWEEVERIAYLY"
     gene            complement(22368..24908)
                     /locus_tag="ACJFEZ_000268"
     CDS             complement(22368..24908)
                     /locus_tag="ACJFEZ_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916416.1"
                     /translation="MKKIFYGVAAFIVVLLIALYTLLFTSLGNNIVANFIQDKIKQST
                     GLDANITQFVLCFSSLDIEANLANMADLKLEGNLSLFKLGFDLDYIISLDKNYAKNLG
                     LNLNQNLAFLGKINGKSSDFMIDGKGYLFGSNVLLDARVYNYSPIALNLSANDLQISE
                     LLALFGRGNLAKGTIDIASKISAKDLKPDGNAIIKLDNTYINYAEIKKEFNIDLPENS
                     NLKAEILANIKDDTVYTVSKIYNSYLTLQTQKTLYNLIQNTLNTDFDLSVPNLAKLEK
                     LTKTKLNGSLGVKGDASVANNALTGLNANVIGLGGEVKANLKNNQLNLNASNASLEKI
                     LALIGYGGIVSGNLNANLVSEGLDFANFNADVKINNAKLNSAEIKKIAKLDLPNTNFS
                     LDAKAKAKNGNISYNALLASNLLNIKKLDGTYNLKNAELNTDLNAFIDDLSQFNAIAG
                     QKLQGKAELNAKAHIIGAQIQNLNANANIAGGLIKANSNGKKLDLDINKLDLSKVFTI
                     VGMPNYASGIVNASARLDDINFNNLNGKINAEAKGILNAVVLSQIMDKKFPSNTNYDL
                     NIKADLKNNIADFEGVLNSSLANLSNFKGKFDINKMVLNSDYVLDIADFSKLGFLLDR
                     KLKGKASFNGKIGFDKTLNFTALSKNLFEGKLDSTLKNNILNAKLEGVDLSTLASGLD
                     FIDIYQGKANLDAKYNLISEQGEVNADMKEGKLKPNAITAALKLITLKDITTDVFHTA
                     NAKALINKENIKLDLNMQADRSYVLVSSGMLNSKSGSLNLPFDIKIDRANFKGNITGT
                     TQKPQVKLEAGSVVNSIKNIVGDKAQDGVQKAGEKVDEGINKLLNKIF"
     gene            25071..25331
                     /gene="groES"
                     /locus_tag="ACJFEZ_000269"
     CDS             25071..25331
                     /gene="groES"
                     /locus_tag="ACJFEZ_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HGG0916417.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKIDNSEYLVLNLDDILGILK"
     gene            25352..26989
                     /gene="groL"
                     /locus_tag="ACJFEZ_000270"
     CDS             25352..26989
                     /gene="groL"
                     /locus_tag="ACJFEZ_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HGG0916418.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSNPY
                     ILLFDKKIANLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETSSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKINLDLKGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPAMPDMSGMGGMGGMGGMM"
     gene            complement(27025..27267)
                     /locus_tag="ACJFEZ_000271"
     CDS             complement(27025..27267)
                     /locus_tag="ACJFEZ_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:pantothenate symporter"
                     /protein_id="HGG0916419.1"
                     /translation="MSLTHNDLSNLCILISLLFLEYILINAKTFRQMTRFANFYGVIM
                     VLSFIVSWQIFNAYFNFLVFLILFFVSYKIWQFKKK"
     gene            complement(27258..27479)
                     /locus_tag="ACJFEZ_000272"
     CDS             complement(27258..27479)
                     /locus_tag="ACJFEZ_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916420.1"
                     /translation="MNHEKSLIYLIALCLSYTAMQAVCKYAEEQREDRAVPIAALIRL
                     GMGYGISYANAPGVGEQTYIGRPPFGGCH"
BASE COUNT         9967 a         4562 c         4163 g         8793 t
ORIGIN      
        1 tatatacaaa ggagttaaaa tgccattact tgatagtttt aaagtagatc ataccaaaat
       61 gccagcaccc gctgtacgtt tagctaaaac aatgaagaca ccaaaaggcg atgatattag
      121 cgtatttgac ttgcgttttt gcatacccaa taaagacatc atgagtgaaa aaggtacgca
      181 tacactagaa cacttatttg caggttttat gagagatcat ttaaattcgg atttggttga
      241 aatcatcgac atttcgccta tgggatgtcg cacaggtttt tatatgagtt taattggcac
      301 acctgatgaa aaaagtgttg ctaaagcttg ggaagcctca atgaaagata ttttaaatgt
      361 gagcgatcaa agtcaaattc ctgaactcaa tatctatcaa tgtggaactt gtgctatgca
      421 ttctttggat gaagcaaaag aaattgcaca aaaagtttta aattctacca taggcataat
      481 gaacaacgaa gaattaaaac ttgaaaatat ctaaaaatta gtccttaaat ttctaatgac
      541 taagcttttt ttaatatatt tttttataca atgtgcagaa tttaactttc taaggagaaa
      601 aaatgaaact gatgtgccag atgtgtaata tctagtgcgt cctttggctt taacattatg
      661 tttccaaagg cccagaaggt ggataaggag atataatgtg tagaaaagtc aaaaagttta
      721 tttttttcaa aacacaactt aaaatcctaa tttttagtta aatcttacga aacaaaatct
      781 aaacattaag atatcttctt atccttaaat ataattttaa ggagagaaaa tgaatttacc
      841 tgtacttgat ttaaagattt atgaaaaaga caaaagtgcc tttcttaaaa atctaagaga
      901 agttacttca aatgtaggtt ttttttatct tatcaatcac ggtatcgata aaaatttaaa
      961 tgaaaaatta tttaaactta gtaaagattt tttcaatctt cctagaagct ctaaagaact
     1021 tatttccatg gtgcattcgc ctcaatttag aggttataca agcgaaggct ttgaatatac
     1081 tgctggagaa aaagattata gagaacaaat tgacataggc acagaaagaa aagctttaaa
     1141 atgggattta aattcgcccc tatggcaaag attagaaggt ccaaatttat ggcctgatga
     1201 aattcctgaa cttaaagaaa tatttttagc ttggcacgaa caaacaagaa acgcttgttt
     1261 aaaaatttta caagcatttg ccgaagctct tgatctgcct agcgatgcct ttggcaaact
     1321 ctatggtgaa aattcttatg aacattgtaa aatcatacac tatccaaaaa tctccaaaga
     1381 tgcctctcaa ggagtaggac cacacaaaga tggtggactt attacctttg tttttcaaga
     1441 agagcaaaac ggacttgagg ctttcataga cgatcaatgg attagtgttc ctccacttga
     1501 aggtagtgtt gtggttaata taggagaatt tttagaatta gccactaatg gttatctaaa
     1561 agctactata caccgagtaa atttaagccc taaagaacgc tttagtatag cttatttcct
     1621 tggagtgcag cttgataaag atattcctat ttttccatta aatcctgaac ttgtccaaga
     1681 aagcaagggc gtggatacag atccaaaaaa tccactttta agaaatgttg ctagcaacta
     1741 ttttaaaaga atgatacgct cacatcctga tgtagcacgc atttatcaca gcgatttaat
     1801 agaaaaattc agtttcgcat aaaaaggagg gaataatgac tatatttgca aaagcttttt
     1861 gcatagcaac tctttttaca ggctttgcct gggctaatga agaacttaaa gtaggttctt
     1921 cagttgtccc acatgcagac attttaaagt ttatcaaacc tactcttcaa aagcaaggtt
     1981 atgatttaaa aatttacgaa tttaatgatg gggtgattcc taatattatg gtggaaaatg
     2041 gcgaacttga tgcaaattat tttcagcatg aaccttattt gaaagaattt aatcaaagac
     2101 aaggcactca tcttgtaaaa gttgctagta ttcatatcga acctatggcg gtatattcta
     2161 aaaaacataa agaatttcaa cctaaaacag gggcaagtat atcaatacct aacaatccta
     2221 caaatgaaag tcgtgcttta cgcatagtag caagtgcggg attaatcgag attaaagata
     2281 acgaacttgt tacgcctttg gatatcgtaa aaaatcctaa aaatcttaaa tttgtagaat
     2341 taaaagatgc ccaacttaca agaagtttag atgatgtaga ttactctctt atcaatagta
     2401 attttgcaat tttatcgggc ttaaatccta taaaagatgg gctttataca gaaaataaat
     2461 atagcgaata tggcaatatc atcgccgtta aagcaggaaa tgaagagctt gataaaatca
     2521 aagctttagt caaagcttta caaagtgatg aagttaaaaa ttttatagaa gaaaaatatc
     2581 agggtgcttt aatccctact ttttaattta acaacaaagg agaacaatat gaaaaattca
     2641 atcatttctt acccaagaat aggtgcaaat agggaattaa aatttgctat tgaaaaatat
     2701 tttaaagctc aaagttctaa agaagagctt ttagaaactg ctaaaaattt aagagctaga
     2761 cattggaaag atatccaaaa tgcggggatt gatttcattc ctagcaatga tttttcgttg
     2821 tatgataatg tactagatgc ggctgtgctt tttaatatca ctccaaaacg ctataaagat
     2881 ttaaatttag atcctttaga tgagtatttt gcacaaagtc gtggttatca aggaaaaaat
     2941 ggagatacca tagctctagc aatgaaaaaa tggtttaata caaactatca ttatttagta
     3001 cctgagtgtg atgatgcaag tattatagct ttaagtgggg ataaaatttt taaagaatac
     3061 cttgaagcaa aagagcttgg catagaaaca aaacctgttt tagtaggaat ttttaccctc
     3121 tttaaactca tagcctttaa agatgaaaat actaaacaac tcgctaaaga caagctttta
     3181 caagcataca ttgaacttct taaaaagctt aattcattag gggtagcatg gttagaactt
     3241 gatgaacctt atttagttta tgatttaaat caagaagata ttgctttatt tgaagaattt
     3301 tacaaagaac ttttaaaaca caagggagaa gttaaaatct tgcttcaaag ctattttgga
     3361 gatttaagag atatttatac taaacttcta gaaagtgatt ttgatgcttt ggggcttgat
     3421 tttgtagaag gcaaagaaag tttaaattta atccaaaaac atggttttgc taacgacaaa
     3481 atactttttg caggtatagt aaatggtaaa aatatctatg ctaatgatta cgcaaaaagc
     3541 ttaaaactta tcaaagaact tcaaaaatac actcaaaata tagttataaa tacctcgtgt
     3601 tcactcttgc acgttcctta tagcacagaa tttgaaacta aattagattc aagttatctt
     3661 aaacttttct cttttgcaaa agaaaaactt aaagaattac aagacttaaa agctatcata
     3721 aatagcaatg aagaaaatcc tctttttaaa gccaatcaag aactctttaa aaatattcct
     3781 aatcgtttag atgaaaaagt aaaagctaga cttcaaactc taaaaaaaga agattttgta
     3841 agaaagcctg aatttaaaga gcgtatccaa attcaaaaag aatttttaga acttcctgtt
     3901 ttaccaacca caaccatagg atcatttcct caaagtgctg atgtacgctc taatcgtctt
     3961 gcttttaaac aagaaaaaat ttcagcacaa aactatactg aattcaatca acaaaaaatt
     4021 aaagaatgta tccaaattca agaagaaata ggacttgatg ttttagtgca tggggaattt
     4081 gaaagaaatg atatggtgga atattttgga gaaaatttaa aaggcttttt atttactcaa
     4141 aatggctggg ttcaaagcta tggaacaaga tgcgtaaaac cacctgtaat ttggggcgat
     4201 gtatcacgca caaaacctat cactctagca tggtctaaat ttgctcaaag cttgagtaaa
     4261 aaaatcgtaa aaggtatgct aacaggtcct gtgactatac tcaattggtc tttcccaaga
     4321 gaagacatca gcctaaaaga aagcaccgag caaatagctt tagctttaag agatgaagtt
     4381 ttagatcttg aaaatgcggg cattaaaatc atacaaattg atgaagcggc tctaagagaa
     4441 aaactgcctt taagaaaaag cgattggcat agtgaatatt tagattgggc gattcctgct
     4501 ttcaatcttg tacatagcgg agtaaaaacc aaaacacaaa ttcataccca tatgtgttat
     4561 agcgaattta gcgatatctt aaaagaaatt gatgcaatgg atgcagatgt aatatctttt
     4621 gaagcttcaa gatcaaatct caatctttta gataccctaa aagctgttaa ctttcaaact
     4681 gaagttggac caggagttta tgatatacat agccctaggg tgcctagcgt ggaagaaata
     4741 agctcaacca tagaaaaaat tcttaacaaa ttgcctaaag agcaaatttg gatcaatcca
     4801 gactgcggac ttaaaacaag gggttatgaa gaagttgtag ctgctcttaa aaatttagtt
     4861 attgccacac aaaaaataag agagaaatta taagggggtt ttatgtgtag cttttctttt
     4921 gaaatttttc caccaagaag agatgaaaac attaagaatc ttaatgcaat tttagatgat
     4981 ttaggacaat taagtcctaa cttcatcagt gtaacttttg gtgctggcgg ctctataaat
     5041 tcaaaaaata ccctagaaac agcaagctta attcaagaag aatataaaat tcctagcata
     5101 gtgcacctac cttgcattca ttctagtaag gaaaaaatta taagcatact tcaagaatgc
     5161 aaagaaagac aacttgataa aattcttgct ttaagagggg atgtatgtaa tgatttggaa
     5221 aaaagtaaag atttttctta tgcaagtgat ttgatctctt ttatccgaaa gcaaggagaa
     5281 tttgaaattt atgcggcttg ttatcctgaa aaacacaacg aatctcgaaa ttttatagaa
     5341 gatatacacc atcttaaaaa taaagttgat gcaggcacag acaaactcat cactcaactt
     5401 ttctacgata atgaagattt ttacactttt aagcaaaatt gtgctttagc gggtattaat
     5461 attcctattt atgcaggcat tatgcctatt acaaacaaaa gacaagtatt aaaaatttca
     5521 cagctttgcg gagctaaaat tccacctaaa tttgccaaaa ttttagaaaa atacgaaaac
     5581 aatactttag ccttagaaga tgctggaatt gcttatgcca tagatcaaat tgtagatttg
     5641 attactagcg gggtggatgg aattcatctt tataccatga ataaatccaa agcagctata
     5701 aaaatttatg aagccgtaaa atatttatta aaagaagaac ttcacgctta aaaataaaac
     5761 ttacttgctt ttatcttgat tgattttaag ttttaattca taattttcta taagacaaac
     5821 aaaaactaaa gataaaagca aacccggaag aagtcctaag aaaaaatata aaaaagaatg
     5881 aaatttaaaa aagaaaaaaa gtgcgccaaa aagcattaaa gctaaggacg cacctttgaa
     5941 gaattctaag atataaatca atgaccttcc tcaactatcg ttgcacctgc tagataaaca
     6001 taagtcaaaa tcataaaaat gaatgcttgt aaaaatgcca taaaagttaa aagaacatat
     6061 gcaggaagcg gtgcaatata aggcacaaga gccaaaatta ccattaagaa taaatcatca
     6121 cccttgatat ttccaaaaag acgaaaagat aaagaaacaa cgcgagaaag gtgagatact
     6181 acttcgatag gaaacatcaa aggagcaagg aatttaatag gacccataaa atgagcaaaa
     6241 tattttataa aaccttgagt acgaattcct tcaaaatgat aataaacaaa tacaataata
     6301 gccaaagaaa gtgttaaatt taaacttgct gttggagcat gaaagcctgg tataataccg
     6361 atgatattac taaagaaaac tataattccc aaggttgcta caagaggaag atattttctc
     6421 gcaccttttt catctcccat agtgtcgcgt cccattgaca aaacaccctc taaaaacgct
     6481 tcacctaaat tttgcatacc gcgtggaaca agttgcatag aacgagtagc cattgaagca
     6541 caaatgacag caatcaaagc taccaaacct aaatgaaaaa aataagaaaa agtatgactt
     6601 gagtcaagta aagaactgaa taaaaataaa tctttcataa tttcctcgct attttttaaa
     6661 ctctaattat attatcatct tgcttatatt ttaatgaaaa ctaacaaaat attcactcct
     6721 aatttaataa aaaaatagct ctaaatttgt tgatgttaaa acaaaaaata taaggcttta
     6781 tagcaatatc acatccattc taaaacttgg gcaagctctt tggctacaaa gcatttaagt
     6841 cctacatctt ctaaaggttt agatggaata atagcatttt taaatttttg cattttggct
     6901 tcttttaaac gagtatcaag actaaaaact tctcttattt ctccatttaa actcaattcc
     6961 cctataaaaa cacaatcctt actcaaagga cgatttttaa aactagaaat aatagccgca
     7021 accacagcca aatcagctgc agtttcattc actcttactc caccgctaat atttacaaaa
     7081 acatcataat gaccaagagg aatttctaat tttctttcaa gtaaagccaa aagcatatca
     7141 agacgatttt tttcatagcc tgtggcactg cgtttaggat aagaactctc gcacactaga
     7201 gcttgcacct ctaaaaccaa agcacgagaa ccctccatta caacacctaa agcactgcct
     7261 gaagtagctt tacctcgcgt aaaaaaacga ttggctaaat cttttgcact aattaaaccc
     7321 ttaaaagtca tttcaaaaat tcctacctcg cttgtgccac caaagcgatt tttaaaaccc
     7381 cttaaaagcc tgatttcttt agttgcatcc ccttcaaaat aaagcaccac atcgaccata
     7441 tgttctaaaa ccctagggcc tgctatggct ccttctttgg tgatatgtcc tattataaaa
     7501 gtgctgatat tgtaagtttt gcttactcgc ataagttcaa aagtgatctc gcgcacttga
     7561 gtgatacttc cagccgctga agcaattttg tttgaatata aggtttgtat ggagtcgatg
     7621 ataagaattt cataattttt cttatgcaat tcttctaaaa tattttcaag acaaagctct
     7681 gtaagtaaaa ataaattagg agtattagcc tcaagacgat cggctcttaa tttgatttgc
     7741 gccttacttt cttctccact tacataaaga acttttttat tttttttagc caaattagaa
     7801 gcaatcttta gtaaaagtgt agatttgccc accccagggc taccacctat aagtaccaaa
     7861 gaaccctcaa caagccctcc acctaaaacc aaatccagct catcatcatc agtgctacac
     7921 cttgaaaaat gctcgagctc cacatcttct atacagatag cctcgcttgc ttttgtactt
     7981 gcttgtgcga tttcttttaa aactttaatt tgttcagatt ttaattctat aaaactatcc
     8041 caagaaccac actcaggaca ttttccaagc catttgcttt gctgatttcc gcaagcttga
     8101 cattcaaaaa gaattttatt tttagccatg atactttctt taaagaatat ttattgcaat
     8161 aatttttcac attataacaa aaattaaatt aaaatttaac aaaaagtcaa ataaaattaa
     8221 gttttatatg attataatat aaataaaata aaaaaggcta gagtatgcaa aaattactaa
     8281 aagtcgccct aatccaattt gctccaaaat cttacgaggt tcaaaacaat ctcgataaag
     8341 ccttaaagct tgcccatctt gcattagagc aaggtgctag gctgatagtt ttgcctgaac
     8401 tttacgatag tgcttattgt gtggaagatc aagatgaaaa atttagctta aatttacatc
     8461 aagcacatcc taatcttgat gcattacaaa aattagctaa aaactatcaa gcttatatcg
     8521 tagcatgttc tatagaaaaa gatacccaac tttatgatag tgcttacatc attagtcaca
     8581 aaggtctttt aggtgtttat agaaaaattt atctttgggg taatgaaaaa gaaagattta
     8641 caagaggaga taaatatcct atttttgaac tagaatttga aaattttaaa ctcaaattag
     8701 gtttgcaaat ttgttatgaa ataggcttta gcgaaggatc tagattttta gcgcttcaag
     8761 gagctgaaat catttgcttt ccttcagctt ttggaaaagc aagaacttat gtttgggatc
     8821 tagcaagtag atctagagcc ttagaaaatg gtgtttttgt cttggctgct aaccgatctg
     8881 gaagtgaaat ttctaagata aataatgaaa ctttaacctt tgctggaaaa tcaaaaatta
     8941 tcaatcctaa aggagaaatt ataaaagaga tcttagaaga agaaggtttt atcatagctg
     9001 aacttgatct tgaagaagtt caaattcaaa gaaaaaattt accttatctt aaggatttaa
     9061 atctcaaatt aaatcaagaa atattaacaa acatccatct taatacaaag gagtaaaaat
     9121 ggcaaaagaa attctagttg cttatggcgt ggatattgat gcggtagcag gatggctagg
     9181 aagctatgga ggtgaggatt ctcctgatga tatttcaaga ggtctttttg caggtgaagt
     9241 gggtatccct aggcttttaa aactctttaa aaaatataat attcctgcaa cttggtttgc
     9301 tccaggacat tccatagaaa cctttcctga acaaatgaaa atgatagtgg atgcaggaca
     9361 tgaaataggt gcccatggat attcacatga aaatcctatt gcaatgagtg ctaaacaaga
     9421 agaagatgtt ttacttaaaa gtatagaact tatagaaaaa atcagcggaa aaaaaccaag
     9481 tggatatgtg gcaccttggt gggaattttc aaatatcacc aatgagctct tgcttaaaca
     9541 cggcatcaaa tacgaccatt ctttaatgca taatgacttc acaccttatt atgtgcgtgt
     9601 tggagacaaa tggactaaaa ttgattatag taaagatgcc aaagaatgga tgaagccttt
     9661 ggtacgcgga caagaaacag atttgattga aattcctgca aattggtatt tagacgatct
     9721 tcctcctatg atgtttataa aaaaatctcc aaatagcttt ggttttgtct ctccaagaga
     9781 tataggccaa atgtggatag atcagtttga ttgggtttat agagaaatgg attatgctat
     9841 ttttcctatg actatacatc ctgatgtaag cgctagacct caagttttac tcatgcatga
     9901 aagaattatt gaacatatca ataaatacga aggtgtaaaa tgggtaaatt taaacgatat
     9961 ggcggatgat ttttcaaaac gctttccaag aaaaaaataa atttgcaagg cttttagcct
    10021 tgtgaattca aaaggataaa aatgtgtatt ttatgtggcg aaatgataag cactttacat
    10081 tggagtgaat taaattttaa agaagaaaaa cacgaactta gcgtaggtga agaacaaaaa
    10141 gaaagattaa ggataagact taaaaaagtc aaaattttaa atgaaatttt agaattttat
    10201 ggattaaaac ttaaagaatg gcaaaattca aaatacatac taagcaataa aaaagggcgt
    10261 gatattatcg ttaatgattt aggcgatttg tggattaagg ctagcgagct tgaaaaaaaa
    10321 tcatttgatg tattagatga aaatctactt cattttttaa gagctaagca tggctaaaat
    10381 tcccgttcat gttgttaccg gttttttagg aagtggaaaa acaacctttt taaaagaaat
    10441 attaaccaat caagctctta acgatatcgc tcttgtaatc aacgaactag gggaagtttc
    10501 tttagatcat aaactcgtac aaacagattt tatcgaggag caaactttat ttttaaatgc
    10561 aggttgtgct tgctgcaata aaagagaaga tttgcaaaag aaatttaaag aattgcttga
    10621 caattttgaa aacaaaggta aaaaacctca aagagtcata ctagaaacct caggcttagc
    10681 aaatcctgca cctattatct ttacttttca aagtgatgtg tttttagcca accattttga
    10741 attagccaat attatcactt gtattgacgc ttttgaaggg cttaatcact tacaaaatga
    10801 agaagcttgc aatcaaatat taagctctga ttttttaata ctcacaaaaa aagatcttaa
    10861 tccccatacc caaagcttgg aagaaaagat aaacacttta tatcctaata tacaaatcat
    10921 aagcaaagaa aattttaatt tcgatatgct ttctagccat cataaaattc aaagagaaat
    10981 taaaaatata gaaataaaaa gccataaaga tgacataagt tctataactc ttatttttga
    11041 caaggctata aattggaata tttttagcat ttggcttagc atgcttttac atgaacacgg
    11101 atcaaaaatt ctaagagtaa aaggacttat caatacagag gaatcttatc taaccaacat
    11161 taatggagta ggacatctga tttatcatcc tacgcatact aaaatttcaa ggcttaatca
    11221 tccttcgcaa ttggtattta tagcgaaaaa tttaaagcta gataagatta aggaatcttt
    11281 agaaaatttt ttaaggcttg aacaattaaa ttaatcaaaa acaccctcta aaagtgtgtc
    11341 taagaaattt tgtgcattaa attctatcaa atcttgcatt ttttcaccca cccctatata
    11401 caaaatagga agttctaatt cacgcgctat actaaaaagc gctccaccct ttgctgtgcc
    11461 atcaagttta gtaataataa ctccatcaag ctgaacaagt tcattaaaag ctttagcttg
    11521 taaaatgccg gcattgcctt gagtaccatc aagtactaaa atttttctat gcggggcatg
    11581 aggcatagct ttagccgaaa ttctaacgat tttctctagc tcattggcta aatttttttg
    11641 attttgcaaa cgacccgctg tatcgatgat aaccttatca aaacccttag ctctagcctt
    11701 gctaatagta tcaaaagcaa ccgccgaagg atcatgacct tgttgggtta aaactatatc
    11761 tacccctact ttttcagacc aaagtcttag ctgctctatc gcccctgccc taaaagtatc
    11821 acaagcgcct aaaatcactt tttgaccttg gcttttgtat aaattagcaa gcttagctat
    11881 actcgtggtt ttacccgcgc catttacccc taaaataagc tccacaaaag gcttttcatc
    11941 taagaattct ttattttcgt aaagaaaata agaacccatc acacgcttta aatcttcttt
    12001 tttaacctca tcactgggtg gtaaataata aatgatttct tctacgatct catacgccac
    12061 atctgcttca agtaaaattt cctctagtaa atctttggta atttttttat tttcaccttt
    12121 aacacccact atactttcaa gggtttttgc aagtcctttt ttaaaaaaat caaacattaa
    12181 agtatcgcct tttgtatatc aatttctaac atttcttctg gaatcaatcc taagtattga
    12241 tttataagct gagagttttt atcatataaa aacatagtag gaattccatt aactccgcct
    12301 aaaattttag ctaaaagata attattttca ccattggcta ttttatataa aatctgattt
    12361 ttttgagcaa aagctctaag ctcctcatca ctcttatctt caagtaaaac acccactata
    12421 ttaaactgct cttcatattt ttcttgaagc ttattaagat gcggaatctc tgcaatacaa
    12481 ggggaacacc aagtagtaaa aaacacaaac aaagtcgctt tatctccatc agcaaaattt
    12541 aaattttcat tatctttttt tataaaaatt gaatttccgt ctattaaatt gagattaaat
    12601 ctcaagttct cactttgact taagcttgat tgaacgcttg cattcatatc actttgatct
    12661 ttttctttat cattgctaca agcaacaaaa aaactcaaga gtatagctag tgtaaatact
    12721 tttttaattt tcattctatt attttccttg tatctttgta aaaaatgtta aaattatatc
    12781 atagttaaga taataatttt taaaaaggca cacgatgcaa aaaacatctt ttaggacttt
    12841 gcaaaaaaac cgtctcgcgc aacacaaaaa acttaaattc aagcaagatt tcatagtgtt
    12901 taaggaatgt tttaacttga ttaaaaaaac aaaagcgaaa aatattctaa ttttcattcc
    12961 tttaggatat gagccaaatt tactcaaatt tagacatatt tttagtaaaa atcataaact
    13021 ttttgtccca tttatgcaag ataaaagttt aaaaattgta aaattaagat tgccttttat
    13081 taaaaaaagg tttggggtat tagaacccat ggactccttt ttgaaaacta aaattgatat
    13141 agctatcata cccgtgatag gagtagatag agaattaaaa agaataggac atgggcaagg
    13201 tttttatgat agattttttg aaaatttaaa ctataaacct cttgtaattt ttgctcaaag
    13261 tatcaatgct ataagtgaaa aaaaattaac ccaagagcat gatattgcgg gtgaatttta
    13321 tatcaaccct tataaaaaat actacaagaa agacaacaaa tatgatagaa tcacttatcg
    13381 cacttataac cgctatagtc ggtcttggaa taggatattt agttgcaaaa aaaatcaatg
    13441 atgctaaata tgaaattttt gttgagcaag caaaagcgaa agcaaaagct atagaatacg
    13501 aagctgaact gattttaaaa gatgccaaaa attcaatcct taatgccgaa cttgaagtga
    13561 aaaaaaaata cgaggataaa actcacaaaa ttcaaaaaga attcaatcaa aaatttgatg
    13621 aattatccaa aaaagagcaa aaacttcaac ttcaagaaga aagcttaaaa gaaaatcaag
    13681 aagaattatt acgctctaaa aaacaaatgc ttgatttaca atcagatgct gacaagctta
    13741 aaaaacaata ccaaacaaaa ctcaatgatg ttttaaatat tttagaacat tcagcagggc
    13801 tcactcaaga tgaagcaaaa aatatcattc ttgaaaaagt agaagaaaac tcacgcaatg
    13861 aaattgctca tatcgttagg agatatgaag aagaggctag aaatgaggct aaaagaaagg
    13921 caaattacat catagcacaa gcaacctctc gttttgcagg agaatttgct gctgaaagac
    13981 ttattaatgt tgtcaacatc aaaaacgatg agttaaaagg gcgtatcata ggcaaagaag
    14041 gacgcaatgt taaaacctta gaaatggttt taggagtaga tatcatcatc gatgatacac
    14101 ctggagccat catagtaagt tgctttaatc tttatcgccg tgctattgca actaaggtga
    14161 ttgaactttt agtagaagat ggaagaattc agcctgctcg catagaagaa attcacgaaa
    14221 aagtatgcaa agaatttgat aatgctattt tagaagaagg tgaaactata ctgatggact
    14281 tagggctttc taaggtccat ccagaaatca ccaaacttat aggaaagctt aaataccgcg
    14341 caagctatgg acaaaatgct ttagcacatt ctttagaagt agctcattta gcaggaatca
    14401 tcgctgctga gtgtggaggg gatgaaaatt tagcacgacg cgcaggaatt ttacacgaca
    14461 taggcaaagc tttaacgcat gattttgaag gctctcatgt agacttagga gcagaacttt
    14521 gcaaacgcta taaagaacat cctgtggtta ttaatgctat ttatgctcac catggacatg
    14581 aagaagctac aagcatagaa tcagcagccg tttgcgcagc cgatacgctc agcgctgcaa
    14641 gaccgggtgc tagacgcgaa gtcttagaag ctttcttaag aagagtaagc gagcttgaag
    14701 agattgctaa aagcaaagaa ggtattaaaa atgcttatgc gattaatgcg ggaagagaaa
    14761 ttcgtgtcat tgcaaatgca aaacttgtaa atgatgatga aagcgtgctt ttagccaaag
    14821 aaatagctgc tgaaattcaa gaaaaaatgc aataccctgg agaaatcaag gtaaatgtca
    14881 tacgcgaact aagagccata gaatacgcca aataagagag ctaatatgca agatatgata
    14941 gataccttac taaaatacgg ctatatagtt ttatttttct attctttagg tggtggaatg
    15001 gtaggaattt tagccgctgg agttttaagc tctcaaggaa aaatggattt ggctttatgt
    15061 ataagcatag cttttgtggc taatactttg ggttctacct tgctttttat acttggaaaa
    15121 tactataaaa aagatattat gccttatttt aaaaatcatc gccgaaaact tgcccttgct
    15181 atgatgaaaa ccaaacaaca tggagtcgtt ttgcttataa ctcaaaaatt tgtctatggc
    15241 ttaaaaactt ttatccccat agctgcaggc atagcaaaat ataaatttat taattttttc
    15301 atcatcaata cttttgctag tttactttgg gcagtgcttt taggatatag cgcttatgca
    15361 tttggttttg ccatagaagc aatttttaat aagttaagct cttatcctta tattgcacct
    15421 ttatttttaa tcgtattggt tggaattatt tggttttatt tgactaaatt ttctaaaaaa
    15481 taatgtcttt ttggaattct ttatatctaa accttaaaga attccgttat ttatttttat
    15541 ttggctttat tgtttttgtt tttaatatat ttttagaata taatcatttt ttaaacctta
    15601 aagaaaagaa acattatcta gtagaaaatg ccttgctttt acagtattat ccaaaacata
    15661 ataaaaacaa taaaaaatac tgggttttaa aacttaaaac aaaggatttt atcctttata
    15721 ctacaagctt taaggattta aatttaagca aaaatcagct tttgaattta aaaataatca
    15781 caaataatat ttcctttaag gattatcttg gaaaaagctt ttatgctcct agctatggtt
    15841 ttgaagtatt aggatatctt aaaaacaata ctctcatttc ttatttttta aaccaacata
    15901 caaatgaaaa aatacaagaa ttttacggag ctttattttt tgccctaccc atctcctcag
    15961 aacttagaaa cgatgttaat cattatggtg ttgctcattt aatagcaatc agtggttatc
    16021 atataggttt actttttact ttggtatttt ttatactcgc acccttgtat agtttttttc
    16081 aaaaaagata ttttccctat agaagcttac gctttgattt aagcattttt atttttatct
    16141 tgctttttgc ttatgcttat cttataggct ttgtgccttc ttatgttcgt tctttaatca
    16201 tggctctttg gggtttttat ctgctttgta aaaatatcaa aattctaagc ttttttaccc
    16261 tttttataag tatatatctt tgtatagtcc tttatcctag gcttttattg agtataggat
    16321 ttttcttttc ttgcctagga gttttttata tttttttata tttgcaccat ttttcaaaat
    16381 tatttaacaa tttcttaaat atcatcttag tgaatatatg gacatttttt tgtataatta
    16441 ctcctgtgct ttatttcttt cctcttatca gctatcagca attcctagcc attattttga
    16501 gtggaatttt tatagtcttt tatcctttgg ttttatgttt gcattttata gcacatggaa
    16561 atcttttaga tcctgtattg attgactttt ttaatcttaa attttatgct ttaaatatta
    16621 aaataccaac ttgggcttta atatcctatc tcatactttc tttcatagct atgcgttata
    16681 aaattttagc tcttttttgt atttttgcga attttatccc ctttatcatg attatgattt
    16741 aaaaaataat aaattttaat cccaaaaaga taaacaatcc aagaaatata aatccaaata
    16801 aagaaaaaaa gtatagtaga aaaagaacca taaacactag cataagtttt gttataaact
    16861 atataataca caaacaaatt ctttcctata taccaaatag ctcccgccgc aaaagaaacg
    16921 aatatcaagc ttttaagagt tcctttttga atagaacttg aataagatat aaaaaacaaa
    16981 ccccaaatga tcacaaaagg caaaatttca aaaaaattaa aacctatttt ataatcatcc
    17041 aaagctttct gaatcaaacc cgatatataa aaactaagtc ctaagcctag tgggacaagg
    17101 gttaaaagcg tccagtaaga actaatactt tgccaaagtc cttttggctc actttttgta
    17161 atgcgattga ttacaaaatc atagcctgaa aaaaaagcca aagaagtaaa ggtcatcgct
    17221 ataagaccca ctatacccaa atttacacta ttatttaaaa atgtgtcaag ataagcagca
    17281 actatatctt gctgtgcagg tattaaaaaa gcaaaaatga tttgcttggc tttttcataa
    17341 taagccttaa aacttgaaat ttgcgtaaaa acagaaaaac acacaaacaa aattggtatc
    17401 aaagataaaa tagtataaaa actaagcgct gcggcataat ttaaaatttc tttatctcgc
    17461 aaattggata aaatagcaaa aattctcttc aatcttttcc tttttaaagc cccattttaa
    17521 aaggattgag aatattattt gggtcaaaag cttttttaat atttctcatt aaattcattt
    17581 cggcatcaga aaaagctaat ttcataaaag gagccttaga aagtcctatt ccatgctctc
    17641 cacttaaagt tcctccaagc tccacagtaa gcttaaatac ctcttctact gcttcatagc
    17701 ctttttttac ttgttcttca tcatttttat caggaaccat aatattagta tgcacatttc
    17761 catcaccagt atgaccaaaa caaggaattt taaaaccata ttttttagaa atttcatcta
    17821 taccttcaag taaagcagga agttttgacc ttgggacagt aatatcttca tttaatttta
    17881 aagtcccata catagctata ctttgagaac aatttcttct agcaaaccaa atatctgctg
    17941 cttcttgctc atctttggct attttaaact gacttgctcc tgcgtctaaa aaatgctctc
    18001 ctaaaatttt caaatcttca tcaatagctt cttttacatt gccatctaca tcagcaatca
    18061 aaatagctcc cgcatccaca ggcaaacctt tgttaaattt actttctact gctctaatgc
    18121 taagattatc taaaaattcc atagatacag gattaacccc acttgcaaga ctcttataaa
    18181 ctgcattcat agcgcttttt acacttggaa aaattccaaa agctgttttc ttgaatttag
    18241 gcaagacaat aagctttaag gtaagctcac ttaaaaccgc taaagaaccc tcactcgcga
    18301 ttaaaatacc tgcgagatta tatcctgcaa catctttgat ggtgcgttta cccgcacgaa
    18361 tgatttcccc attaggcaac acagccctta aagccataac ataatcttta gtaatgccat
    18421 actttgcagc tctcatacct ccagcatttt cacttacatt gcctcctaag ctagaatact
    18481 ccatgctagc aggatcgggc ggataaaaaa gtccatgctt agccacttct ctttgtaaat
    18541 gtatattaat cacacctggt tgcactactg cgactaaatt ttcaagatcg atttctagaa
    18601 ttttattcat atgtttttca aagcttaaaa tcaaacctcc attaacagcc aaagctcctc
    18661 ctgtaaaacc cgaacccgcc ccacgaggaa tgataatgat attattttca ttacaaaatt
    18721 ttaatatttt agaaatatcc tcctcgtttc ttggaaacag caccccatcg ggcaaataat
    18781 gcttttttgt agcatcataa ctataagcac gcttatgaat atcatcaaaa taagcatttt
    18841 cactacctag aagttttata aaatattgtt caaattcttt tttcattggc ttaccttagg
    18901 aatattaatt aaagcatcat aatatctata ataattaccc acttcttggg aattaaaatc
    18961 aaaaaaatta cttttataac cacctatacg agaataaaaa ggaacttgta tactgcttgg
    19021 tttagatatg gttaattcat aaagctcact aaaatcttga caatcaacta tctttgcctt
    19081 atcctctaaa gcaaaaatca aaattcccac agcattatcg gcacaaaatt ttctaaaatc
    19141 actacgcttt ggagcaagag atgaagagcg gatgagttgt gctcctagca tatcaatatg
    19201 agtaaaataa atttctggaa agctaaatac aagctcatta taagtttgtt catctggagc
    19261 aatcactaaa cctctatcat aaagaaaatt taaaaccacc tcattaccct tttgtggtac
    19321 aacatttggc aaaggcaagg catcttgctc aagatcagca aaaacactga attttaattt
    19381 tgccaaaccc ttttctttag ctataacact agctcttgct ataatgcttt ttgaagtttg
    19441 aaaacgctgt ataacaacac cgcttgaatt taattttata tcaggactat cttcaacata
    19501 accataaata tcttcaacct ttaaaagttc catttttaca ggctttaaat ttaaatctat
    19561 tgcaaaaaga ctcatactta agcttaaaat aaatgctaga aatttaagca aactaactcc
    19621 ttaaaaaatc aatttaatgt attataatcc ttttttgtta agcaattgta agaattataa
    19681 agtaaaatat agcttttaaa aatttaaaaa tcctcgaaaa aataaggtct ttatatgaaa
    19741 aaactcttac tcctatttgc atttgttatt caaagttttg ccgcacttag cgttgaagaa
    19801 cttacttggg ataatggcga tactttgctt aaattcttgc aaagaaattc tatccctata
    19861 tcgctttatt atgggcttga tagagaagat caagaacttg cctctgatat agcttataaa
    19921 gtaaaatatc aagttttaaa agatgaaaat aataatatag aacaagtttt aatccctatc
    19981 agtgatgatt tacaaattca tatttataaa gataaaaaca atcaatacac ccttgccttt
    20041 tctcctattt cttatcaaaa agaagataga attttacatt taacaatcaa aagttcagcc
    20101 tatcaagatg tttatgaaga aagtggtagc agtactctag ctcgtgctat ggtgcgctcc
    20161 tttcgaggaa gtgttaactt tcgcaatatc caaaaaggcg ataaggttac tctttattat
    20221 gagcaaaaaa gacgcatggg aaaactttgg ggggatattg ctataaaaat ggctgtagta
    20281 gaaattaaca aaaatgcaca agaagtattc gcttttaatg atatttttta caatcgcgat
    20341 ggaaaagaag tggaagcttt tttattaacc aaacctgtaa attatacaag aatatcatca
    20401 acttttagta ctgcaagata tcatcctata ctcaaacgct atcgtgcaca ccttggtata
    20461 gactatgcag cgcctactgg aacacctgta aaaagtgcag gcaaagggac aatcactttt
    20521 gtaggcacta aaggaggata tggaaatgtc atacaagtaa agcatgattc aggctatatg
    20581 actttatatg ctcatttaag tcgttttgca aaaattaaga agggccaaaa agtaaatcaa
    20641 ggtcaactca ttggttatgt aggttcaaca ggcatgagta caggcccaca tttacatttt
    20701 ggtgtttatc taaacaataa agccatcaat cctgcttcag tagttaaaat cgctaaatca
    20761 gagctaagcg gaaaagccaa agaagaattt aaaagcacta tagtaaaata tgaaggaatt
    20821 ataaacgaag ccttagctgc taataagcca aatcctccta aagaagaaga ttttgaaaat
    20881 tatatagaat tttaaggatt gctaagcaaa gccttatctt tagcttctat caaggaatta
    20941 agaagagcta taagcccttc tctttctttg ctttctatct ctttaaattc agcattaaca
    21001 agctgattta ctaaagcttc attaagcaaa tccccatccc caaactctct agctttttga
    21061 ataattttta atactcttaa atcttttttt tcatacatca aatcaaccct ttagataaac
    21121 aacactcaca aagcgtttta aagtcttatc gcgacgataa gagtaaaatg tcttatcatc
    21181 aaaactacaa atattactgt cgataatatt tttaatacct aaattttgag cctgaaattt
    21241 taccaaagct tttaaatcaa gttttctttc atctaaaaaa tctttaaatt ctactcttgc
    21301 aaattctaaa atttctccat ctatttcata gtttttagca caaatactag gcaagataaa
    21361 aagatgaaat ttctgcatgt ctaaattagg attttttgta taaattttat ccacacactc
    21421 ttttaaaata ttttcaaaac tcccttttct tcctgaatga agtgccgcta taatgccact
    21481 ttcatgccat aaaatcaaag gcaaacaatc agcacttaaa acacaaagtg cggtattttt
    21541 ttctatactt atcaagccat cgcaacttag attttttaaa ttctcatcat aaatttcaac
    21601 tttattggag tgaatttgat ccataaaaac acatttttca atatccttaa aacccaaatg
    21661 agaaaataaa ttttctttat gaactttggc tctaaagata ttatagtctt tatcataagc
    21721 gcaaaaaaca ctgacttttt gattctttag taaagataag caattctctc cacttcttcc
    21781 catgatagtc ccttatcctt atcttgcatt tgtgcataaa tataacgagc aagcaaatcg
    21841 ctttctatat tgatttctcg gcctatttca tattctttaa aaagtgtttc cttaaaagta
    21901 ataggtataa tggttaatct aacgccattt tctataattt cattgatcgt aaggctaacc
    21961 ccatctatac ctatactgcc ttttcttgcc ataaatttca tcgcttcttt aggcaaagct
    22021 atataaaaat caaccccatt ttcatctttt tcaatctttt caagcctacc aataaaatca
    22081 atatgtcctt gcatcaaatg tccatctatc ctatctccat accttaaagc aggttctata
    22141 tgcaccttat cttttaaatt ttgtactgct atgtgcttgc gactctcgtg tgaaagttcg
    22201 agttcaaaac catcgctatg aagtttagtc acgctcaaac aagctccatt aacagctaca
    22261 ctatcgccca aattagggcg ataatttgcc tttaaattca aaacattatt ttgataagat
    22321 ttaaccttag caatctctct tataagtcca ttaaacatca cttaacctta aaaaatttta
    22381 ttcaataatt tattgatacc ctcatctact ttttctcctg ctttttgaac tccatcttgg
    22441 gctttatcgc ctacaatatt tttaatggaa tttactacac tacccgcttc aagtttaact
    22501 tggggctttt gtgttgttcc tgttatattg cctttaaaat tggctctatc tatcttgata
    22561 tcaaaaggca aattcaagct tccgctttta gaattcagca tacctgaaga aacaaggaca
    22621 taagaacgat ccgcttgcat atttaaatca agcttgatgt tttctttgtt aataagcgct
    22681 ttagcattgg cagtatgaaa aacatcagta gtgatatctt ttaaagtaat aagcttaaga
    22741 gctgcagtga tagcattagg tttaagctta ccctctttca tatctgcatt aacctctcct
    22801 tgctcgctta taagattata cttagcatct aaatttgcct tgccttgata tatatctata
    22861 aaatcaagtc cacttgccaa agtacttaaa tccactccct ctaactttgc atttaaaata
    22921 ttatttttca aagtactatc aagttttcct tcaaataaat ttttactcaa tgcagtaaaa
    22981 tttaaagttt tatcaaaacc aatttttcca ttaaaactcg cctttccttt gagttttcta
    23041 tcgagtaaaa aacctagctt tgaaaaatca gcaatatcta aaacataatc cgaatttaac
    23101 accattttgt taatgtcaaa ttttccttta aaattactaa gattagccaa agaagaattt
    23161 aaaacaccct caaaatcagc gatattattt tttaaatctg ctttgatatt taaatcataa
    23221 tttgtattgc ttggaaattt tttatccatt atctgactta aaactacagc atttaaaata
    23281 cctttagctt ctgcatttat cttgccatta agattgttaa aatttatatc atctaaacgc
    23341 gcactagcat taactatccc gcttgcataa tttggcatac ctacaatagt aaaaaccttg
    23401 gaaagatcaa gcttgtttat atctaagtct aatttttttc cattagaatt tgccttgatt
    23461 aatccacctg ctatatttgc attagcattt aaattctgaa tttgagcgcc tataatatgt
    23521 gcttttgcgt taagttctgc cttgccttgt aacttttgtc ctgctatggc attaaattga
    23581 gataaatcat caataaaagc atttaagtct gtgtttaatt ctgcattttt aagattgtaa
    23641 gttccatcaa gttttttaat attgagcaaa ttagacgcta aaagcgcatt ataagatata
    23701 ttgccatttt tagctttagc tttggcatca agactaaaat ttgtatttgg aagatcgagc
    23761 ttggctattt ttttaatttc agcactattt aattttgcat tattgatttt tacatctgca
    23821 ttgaaatttg caaaatccaa tccctcgctt acaagatttg catttaaatt tccagaaaca
    23881 ataccaccat agcctataag agctagtatt ttttccaagc tagcattgct tgcattaaga
    23941 tttaattgat tgttttttaa atttgccttc acttctccgc caagccctat aacattagca
    24001 tttaaaccag ttaaagcatt attagctaca ctcgcatcac cctttactcc taaagatcca
    24061 tttagctttg tttttgtaag cttttcaagt tttgcaagat tagggactga tagatcaaaa
    24121 tccgtattta gggtattttg aataagatta taaagggttt tttgagtttg taaagttaaa
    24181 taactattat aaattttact cactgtatag actgtatcat ctttaatatt tgctaaaatt
    24241 tcagctttaa gattggaatt ttcaggtaaa tctatattga attctttttt aatttctgca
    24301 taatttatat aagtattatc aagtttaatg atagcatttc catcaggttt taaatcttta
    24361 gcagaaattt tacttgctat atctatagtt cctttggcta aatttcctcg tccaaaaagt
    24421 gctagcaatt cagaaatttg aagatcgtta gcgcttaaat ttaaagcaat aggagaataa
    24481 ttataaactc ttgcatctaa aagcacatta gagccaaaca aatacccctt gccatcgatc
    24541 ataaaatcgc tcgatttacc attaatcttt cccaaaaaag ccaaattttg atttaaattt
    24601 aaacctaaat ttttagcata atttttatcc aaactgataa tataatcaag atcaaagcca
    24661 agtttaaata gacttaaatt tccttctagt tttaaatcgg ccatattggc taaatttgcc
    24721 tcaatatcaa gacttgaaaa acacaaaaca aactgagtaa tattggcatc aagacctgta
    24781 ctttgcttga ttttatcttg aataaaattt gcgactatat tattaccaag gctagtaaaa
    24841 agcaaggtat aaagtgcgat taaaagcacc acaataaaag ccgctactcc ataaaatatt
    24901 ttcttcactt taaatccttt agtttttttt attaattaac tttagtctaa ttaactaaag
    24961 ttttataaat atttttactc aaagtattga caaaattcat tttttatagt atgatattat
    25021 cactcaaaat taaagagtgc taaaaatcaa tatttttaag gatggacaaa atgaattttc
    25081 aacctttagg aaagcgtgtt ttagtaaaac gcgtagaaga aaccaaaaca acagcttcag
    25141 gtataattat accagataat gctaaagaaa agcctttaat gggtgaagta gtagcagtaa
    25201 gtaaagaaat cactgatatt gcaaatggtg ataaaatcgt atttgctaaa tatggcggaa
    25261 cagaaatcaa aattgataat agcgaatatt tagttttaaa tttagatgat attttaggaa
    25321 ttttaaaata atttataaaa aaggataaaa aatggcaaaa gaaattattt tttcagatga
    25381 agcaagaaac aaactttatg aaggtgttaa aaaattaaat gatgcagtaa aagttactat
    25441 gggaccaaga ggacgcaatg ttttaatcca aaaaagcttt ggtgctccaa gcattactaa
    25501 agatggcgta agtgttgcta aagaagtaga gcttaaagat agtcttgaaa atatgggtgc
    25561 ttcactcgta agagaagtag cgagtaaaac agctgatcaa gcaggtgatg gaacaactac
    25621 tgcaacggtt ttagctcatg caattttcaa agaaggttta agaaatatca cagcaggtgc
    25681 aaatcctatc gaagtaaaac gcggtatgga taaggcttgc gaagctatag tagcagaact
    25741 taaaaaactt tctcgcgaag taaaagataa aaaagaaatt gcacaagttg ctacaatttc
    25801 agccaactct gatgaaaaaa tcggaaattt aattgctgat gctatggaaa aagtaggcaa
    25861 agatggtgtt atcactgttg aagaggcaaa atcaatcaat gatgaattaa atgtagttga
    25921 aggtatgcaa tttgacagag gttatttaag cccttatttt ataaccaatg cagaaaaaat
    25981 gacggtagaa ctttcaaatc cttatatctt gctttttgat aaaaaaattg caaatttaaa
    26041 agatttgtta ccggttttag aacaaattca aaaaacaggg aaaccacttt taatcatcgc
    26101 tgaagatatc gaaggtgaag cacttgcaac tttagttgta aacaaactac gcggcgtatt
    26161 aaatatctct gctgtaaaag ctccaggttt tggagataga agaaaagcta tgcttgaaga
    26221 tatagcgatt ttaacaggtg gtgaagtgat ctctgaagag cttggaagaa ctcttgaaag
    26281 cgctacaata caagatcttg gacaagcttc aagcgtaatc atcgataaag ataacacaac
    26341 catcgtaaat ggcgcaggcg aaaaagcaaa tattgatgca agagtaaatc aaatcaaggc
    26401 tcaaatagct gaaacaagct ctgattatga tagagaaaaa ttacaagaaa gacttgctaa
    26461 attaagcggt ggtgttgcag ttatcaaagt aggtgcggca actgaaactg aaatgaaaga
    26521 gaaaaaagat cgcgttgatg atgctttaag tgcaactaaa gcagcagttg aagaaggtat
    26581 agtaataggc ggtggcgcag ctttaatcaa agctaaagct aaaatcaatc ttgatttaaa
    26641 aggtgatgaa gctatcggcg cggctatagt tgaaagagct ttaagagcac ctttaagaca
    26701 aatcgctgaa aatgcaggat ttgatgcagg tgtagttgta aacagcgttg aaaatgctaa
    26761 ggatgaaaat acaggttttg atgctgcaaa aggcgaatat gtaaatatgc ttgaaagtgg
    26821 aattatcgat ccagttaaag tagaaagagt agctttactt aatgcagttt ctgtagctag
    26881 tatgctttta accacagaag caacaatcag cgagatcaaa gaagataaac ctgcaatgcc
    26941 tgatatgagt ggcatgggcg gaatgggtgg catgggcgga atgatgtaag ccctactacg
    27001 aataatcagc aaattccttg ctgattattt ctttttaaac tgccaaattt tataagatac
    27061 aaaaaataaa atcaaaaaaa caagaaaatt aaaatacgca ttaaaaatct gccaagatac
    27121 gataaaagac aataccataa tcacgccata aaaatttgca aagcgagtca tttgcctaaa
    27181 agtcttcgca tttatcaaaa tatactctaa aaataaaagt gaaattaaga tacaaagatt
    27241 gcttaaatca ttgtgtgtca atgacatccc ccaaaaggtg gtcttcctat gtatgtttgc
    27301 tctccaacac ctggtgcatt agcatacgaa atgccataac ccataccaag ccttattaaa
    27361 gcagcaatag gcacagccct atcttctctt tgttcttcgg catatttaca aacagcttgc
    27421 atagctgtat aagacaaaca taaagctatg agataaatca aacttttttc atggttcatt
    27481 tctct
//
LOCUS       DBBXRO010000009        26513 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.009, whole genome shotgun sequence.
ACCESSION   DBBXRO010000009 DBBXRO010000000
VERSION     DBBXRO010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26513
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.009"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            215..1210
                     /locus_tag="ACJFEZ_000273"
     CDS             215..1210
                     /locus_tag="ACJFEZ_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HGG0916421.1"
                     /translation="MKKILALSVASFALAGALNAADLKIAGSSTVYPFTSFVAEEYAA
                     IHNTKTPIVESLGTGGGFKVFCEGITDISNASRAMKFSEFETCKKAGVTDIVGIMVGY
                     DGIVLAQNKANAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTVEELVMSDISKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGLFGYGFLVSNVDKINAADIDGVKADEKNIADGKYDLARSLFIYINAKKNPKEAF
                     EFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            1220..2134
                     /gene="pstC"
                     /locus_tag="ACJFEZ_000274"
     CDS             1220..2134
                     /gene="pstC"
                     /locus_tag="ACJFEZ_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HGG0916422.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            2131..3219
                     /gene="pstA"
                     /locus_tag="ACJFEZ_000275"
     CDS             2131..3219
                     /gene="pstA"
                     /locus_tag="ACJFEZ_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HGG0916423.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAQAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            3216..3956
                     /gene="pstB"
                     /locus_tag="ACJFEZ_000276"
     CDS             3216..3956
                     /gene="pstB"
                     /locus_tag="ACJFEZ_000276"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HGG0916424.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVVLRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            4028..6472
                     /locus_tag="ACJFEZ_000277"
     CDS             4028..6472
                     /locus_tag="ACJFEZ_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916425.1"
                     /translation="MLETLLKLSEEPLKSKIKDLYFSKFNYVGAKIDFCITQNLGLLG
                     EINLLWAEAKQGKSELKKSFVQLVLTIGKYKFYTEQTPNLLCAFDGEKIAFLPFACLQ
                     EIFYQSDINFSVTPSNHTSEQFLKLPKELDSILNTAQIFYYEKNDEELKTFIKENLTS
                     ENISKIKIDKNNFVSIYHKWNKMVKDTISIDWNLAKKSGIIDADFYLADLLSSENETI
                     SQNLFAILKKDYYEFNKTKSDLGSIINERTSFKDNQKAHHEFWAIYERPPREEFWDYI
                     IKRRDLLVDQDVRERKGAFFTPRIWVDKACEYLSKTFGEDYEEGYYIWDLAGGTGNLL
                     ANFTNKKNIFCSTLDKADIDVIHERIKNGANLFENHVFQFDFLNDEFFDKCDDKGKII
                     QKSKLPLNLQEILKDENKRKKLIIFINPPYAEATSATQVTNTGKNKDKVARENKICEK
                     YKDILGKANNELFAQFFIRIYCELEDCLMASFSKLKYVNSTNFIKFRENFKAKFLKGF
                     MVPADTFDNVKGKFPIGFLIWDMSKKEEIKKIKLDTFNKNGSFLGIKTFYNDQKESIN
                     KWIKIFDDKKSQEKFGFMGNPSPDFQHNSQLYLSLNKGIEHFNFYIFSLKNLLNGAVY
                     FSVRHAINATWINDRDQFLYPNDLYKNDDEFKSDCLAFMLFHGQNRISAKEGINHFIP
                     FSEKELGITKEAFESDFMYKFIKGKIKDENSLFGDELVKIEFSLEAQELLKAGKELFK
                     YYHTHSEDKGYLVNASFYDIKEFFQGRDEKGRMNRPSQAKDEHYKILLSDLNIALNAL
                     AKKLEPKIYEYGFLKG"
     gene            6475..7791
                     /locus_tag="ACJFEZ_000278"
     CDS             6475..7791
                     /locus_tag="ACJFEZ_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HGG0916426.1"
                     /translation="MAKKQLSLTKLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQESLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGVGLSNIFARIVAIVALLVILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQAISIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            7767..8414
                     /locus_tag="ACJFEZ_000279"
     CDS             7767..8414
                     /locus_tag="ACJFEZ_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HGG0916427.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKKRFEKKALKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEYFMSDFRQREKEFLS"
     gene            8456..9976
                     /locus_tag="ACJFEZ_000280"
     CDS             8456..9976
                     /locus_tag="ACJFEZ_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916428.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNLMSHSVFLKKFDVKAGQGFNPCMPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKENAFILELSKDDEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFSKEFPLLDESFELQNNFYSLLGLVGRVLNLGKNL
                     QESVSELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSTMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            9957..12146
                     /gene="hypF"
                     /locus_tag="ACJFEZ_000281"
     CDS             9957..12146
                     /gene="hypF"
                     /locus_tag="ACJFEZ_000281"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016743 - carboxyl- or
                     carbamoyltransferase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HGG0916429.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACAQKECENFIENLKNHLPPLARIDKLIMTQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRINTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGNLVATSANLSGESI
                     IKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            12224..12967
                     /gene="hypB"
                     /locus_tag="ACJFEZ_000282"
     CDS             12224..12967
                     /gene="hypB"
                     /locus_tag="ACJFEZ_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0051604 - protein maturation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HGG0916430.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            12967..13248
                     /locus_tag="ACJFEZ_000283"
     CDS             12967..13248
                     /locus_tag="ACJFEZ_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HGG0916431.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            13232..14323
                     /gene="hypD"
                     /locus_tag="ACJFEZ_000284"
     CDS             13232..14323
                     /gene="hypD"
                     /locus_tag="ACJFEZ_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HGG0916432.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            14320..15294
                     /gene="hypE"
                     /locus_tag="ACJFEZ_000285"
     CDS             14320..15294
                     /gene="hypE"
                     /locus_tag="ACJFEZ_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HGG0916433.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNTNNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIIAKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            15294..15638
                     /gene="hypA"
                     /locus_tag="ACJFEZ_000286"
     CDS             15294..15638
                     /gene="hypA"
                     /locus_tag="ACJFEZ_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008901 - ferredoxin hydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HGG0916434.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(15746..16711)
                     /locus_tag="ACJFEZ_000287"
     CDS             complement(15746..16711)
                     /locus_tag="ACJFEZ_000287"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HGG0916435.1"
                     /translation="MYRKELQNLLSKNQIDNFFFLYGADNFQSELYADFIKEKYQADE
                     ILKLFFEEYSFTRASDFLSGGSLFSEKKLLEIKTSKKIPTKELKVLVELCKNNKDNFL
                     LLELYDESSKQSDIEKIFSPNFVRFFKANNAREGIELLSIKAKQLHIEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNIGSFESFFEKILKRADFKNELEK
                     ILDNFNEIALINSLSSAFYRLFKIALYAKIYGKVDFKELLGYTPPPQVAQNLNEQAFS
                     LKIKHYKEIFNLLLKSEYELKTNSKLAKKEFLIATLLKLARIIKS"
     gene            complement(16704..18638)
                     /locus_tag="ACJFEZ_000288"
     CDS             complement(16704..18638)
                     /locus_tag="ACJFEZ_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HGG0916436.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQIFRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTTLKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKITLDLDCKVVKEELFETIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYKLFEITKTLRKNRLKNAFEFRTEELRMNLDENLSLKS
                     TIFEKDTPSHNLIEDCMLLANKAAAKLIDVGVFRNHSSADMKKIDRLLNELLELGIDV
                     KPKPNLPELIRDIQALADELGLRAEVDKLIIKAQKKAEYSSENGGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKKDEKLFNYLLLNIQSTCENLSVLEREADKVAYDFMDRK
                     FARWAAKNIGKKFKALVVQNDGICIAKLDDEIKGADIILYDTRVNLLESVEVQILEAD
                     IIMAKIYAKTTQRLGKESNV"
     gene            18757..19779
                     /gene="ilvC"
                     /locus_tag="ACJFEZ_000289"
     CDS             18757..19779
                     /gene="ilvC"
                     /locus_tag="ACJFEZ_000289"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HGG0916437.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            19783..20865
                     /locus_tag="ACJFEZ_000290"
     CDS             19783..20865
                     /locus_tag="ACJFEZ_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HGG0916438.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEKAMKKLYKAFEKEELIFVDSKTI
                     ASSKAPKVAKALGQIYIQRDVFLDNRDDVAYIKKQLMEAVRLAKQKGFAIAIGHPRKN
                     TFKALEQSKDLLKSVELVYLSEIYAK"
     gene            20855..21625
                     /gene="dprA"
                     /locus_tag="ACJFEZ_000291"
     CDS             20855..21625
                     /gene="dprA"
                     /locus_tag="ACJFEZ_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HGG0916439.1"
                     /translation="MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRR
                     MSTYTKNCVFELSNLLKNSKISVVSGGALGVDISASMAAMPSTIGVFANGLDEIYPRS
                     NEKIIKQIYENALALSENESHYKPKPYDFLLRNRLIIALSEAVVVAQADLQSGSMQSA
                     RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDF
                     CRQGVSVDEATQIYGEKVYEYELEGKISIEGLFIRVLV"
     gene            21622..22002
                     /gene="ruvX"
                     /locus_tag="ACJFEZ_000292"
     CDS             21622..22002
                     /gene="ruvX"
                     /locus_tag="ACJFEZ_000292"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HGG0916440.1"
                     /translation="MRALALDVGLKRIGVALCIDKIAIPLEGIIRTNRNQAANEVKNL
                     LQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEIRFVDESGTSKEALGYGVA
                     NTRKKDAKLDSLAALIMIKDYFGI"
     gene            21992..22867
                     /locus_tag="ACJFEZ_000293"
     CDS             21992..22867
                     /locus_tag="ACJFEZ_000293"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HGG0916441.1"
                     /translation="MEYNLASIYNDKEFENLKNSFKLPKKICCFINRLKCDNLTLERE
                     FQDLNLEYEKLNEYCYLFKACDKSILSSMQAFNEFKFYIQNYASYLCALNLDVKAGQS
                     VLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNYGVKARVFMKDGKN
                     IGNLCPLKFDKILLDAPCSTLAKMGLELEKSSKEIKNIAKLQKKLLHSALKALKVGGE
                     LVYSTCTFTKEENEEVIENALRSDFDIELLDINLENALAKNGQSSEFEATSKCKRILP
                     CEEYDGFFIAKLRKN"
     gene            complement(23090..23590)
                     /gene="msrA"
                     /locus_tag="ACJFEZ_000294"
     CDS             complement(23090..23590)
                     /gene="msrA"
                     /locus_tag="ACJFEZ_000294"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HGG0916442.1"
                     /translation="MKNIILGGGCFWCVEAAFENFEGIIHTEVGYTGGNDNPSYESVC
                     NGDGNIEVVKIIYNETKISLEQILSLFFKIHDPTSFDKQGADIGIQYRSAIFYENQSD
                     KNTIEDFIKKEQVNFSLPIVTQIYKLQKYYKAEDYHQHYFIHNPNQSYCRFVIAPKLE
                     KIRNYE"
     gene            complement(23638..24156)
                     /gene="ppa"
                     /locus_tag="ACJFEZ_000295"
     CDS             complement(23638..24156)
                     /gene="ppa"
                     /locus_tag="ACJFEZ_000295"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HGG0916443.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     VEILEKAIKNYK"
     gene            complement(24167..24742)
                     /locus_tag="ACJFEZ_000296"
     CDS             complement(24167..24742)
                     /locus_tag="ACJFEZ_000296"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HGG0916444.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADADVTHYSTGDLLRAEVAS
                     GSELGKTIDGFISKGNLVPLDVVINTIVSALKAAPTKTVIIDGYPRSVEQMVEFDKVL
                     SEQNEICLKGVIEVRVSEQVAKDRVLGRSRGADDNEEVFYNRMKVYTEPLEEIISFYQ
                     KKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            complement(24739..26490)
                     /gene="aspS"
                     /locus_tag="ACJFEZ_000297"
     CDS             complement(24739..26490)
                     /gene="aspS"
                     /locus_tag="ACJFEZ_000297"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HGG0916445.1"
                     /translation="MRSHYNTDLNSTHIGEVVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASRTRNEFVLIAEGKIRPRGEGLTNPKLKTGEIEVVVSKLII
                     ENESAVPPFGIGDESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIATAETFLKDIFKACGKEIQIPFRQMPYKE
                     AMENYGSDKPDLRFDLKLIDVIDIFAKSNNEIFANIAKDSKKNRVKALRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFNEEDLNELIKRCELEVGDVVF
                     FGAGVKKTVLDYMGRFRIFLAGELNLINPDALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDEADLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSAA
                     SNETMRELGIKLRENIK"
BASE COUNT         9044 a         3616 c         4769 g         9084 t
ORIGIN      
        1 aaattaagct ttatatttta ttacgagtat agattttatt ttaaggctga aaatctgcaa
       61 agatttttag gtgggcgtgc ctttagaggt ttcaaaagga ctaagtcctt tgtcgcaaga
      121 cggaatttat ttccgtcgcg aagtaaaaaa tgtttccaaa atgtttccaa ctttttctaa
      181 acttccgtta cttttttaaa agtaaggaga aaaaatgaaa aaaattctag ctttaagtgt
      241 tgcaagtttt gctttagcgg gtgctttaaa tgcggctgat ttaaaaatcg caggttcatc
      301 aaccgtgtat ccatttactt cttttgtagc tgaagagtat gcagcgattc acaatacaaa
      361 aactcctatt gtagagagtt taggaacagg gggtggattt aaagtatttt gcgagggcat
      421 aactgacatt tctaatgctt caagagcgat gaaatttagc gaatttgaaa cttgcaaaaa
      481 agcgggagtt actgatatag tagggattat ggtaggttat gatggtatag ttttagcgca
      541 aaataaagcc aacgcacctt taaatatcac taaaaaagaa cttttcttag cattagcaaa
      601 agaaattcca caaaatggaa aacttatacc aaatccttat acaaactgga atcaaatcaa
      661 taaaaattta cctaatcgta aaatcagcgt ttatggtcct ccatcaagct caggcacaag
      721 agatactgta gaagaacttg taatgagtga tatttctaaa aaaattcctg aatacaaagg
      781 cgagtataaa accatacgcc aagatggagc ttatattcca agtggtgaaa atgataatct
      841 aatcgtttca aaacttacta tcgataaaga tgcttttggg ctttttggtt atggattttt
      901 agtaagcaat gtggataaaa tcaatgcagc agatattgat ggtgtaaaag cagatgaaaa
      961 aaatattgct gatggaaaat acgatcttgc aagaagttta tttatctata tcaatgcaaa
     1021 gaaaaatcct aaagaagcct ttgaatttgc aaaaatttat atgagtgatg atttggcaaa
     1081 aagtggtgga gagcttgaaa aaataggact tgttccttta agtgatgata aattaaaagc
     1141 ttctcaaaaa cacgtagaag atagaaaaat tttaaatgat gagcttgtaa aagctggaaa
     1201 agttttttaa ggaaaaactt tgttaaaaga aaaaataatc aaatttgcac tttttttatg
     1261 tgcttttgta agcgtgatag taagttttgc tatcatgctt acaattttaa ttgaagcttt
     1321 aaaattcttt caaaaagaaa gcgttgttac ctttttattc tcaagtcagt gggcagctga
     1381 tgcagctttt atgaatgcag atggcacgag taaacaaggt gtttttgggg cgctatcgct
     1441 tttttgggga actttttata tttcattgat tgctatgcta acggctttac ctttaggggt
     1501 tatgtgtgct atatatttag gtgtttttgc tggcaaaaaa tctaaaaatt acttaaaacc
     1561 tattttagaa atcattgcag ggattcctac tgttgttttt ggattttttg cggctatagt
     1621 tgtagcgcct tttatagtgt ggtttttttc tttatttggc atacaagcaa gctttcaaag
     1681 tgctttaggc gcaggtttta tcatggggat catgatagta cctatagtgg cttctttatc
     1741 tcaagattgc attgaagcag taagcgagaa aaggattaat ggcgcttatg ctttaggtat
     1801 gacaaaaaaa gaagtggttt ttgccgtgat tttacctgag gctattcctg gtatagttgc
     1861 agcttgtctt ttaggacttt caagagcctt aggcgaaact atgatagtgg tgatggcagc
     1921 ttctttgcgt ccaaatttaa ctttaaattt tttagaagat atgacaacgg taacggtaaa
     1981 aatcgtagaa gctttaagtg gagatcaagc ttttgatagt tctttggctt taagtgcttt
     2041 ttctttaggt ttggtgcttt ttgtcatcac tttaatcatc aatatgttta gcgtttatct
     2101 tatcaatcgc tttcacaaaa ggaaaaattt atgaaaaaac tttttaaaaa aagacaaaaa
     2161 gcttcaaagt cttttaaaag actttgtaaa atggggcttt atattaattt aatttttctt
     2221 tgtatctttt taggaagtgt ggcttatctt ggatttcctg cttttaagca aacctatatt
     2281 tttgtagagg ctaatagaaa ttctcctgct tatgatcttt tatctcgcgc agaacaaaga
     2341 aaaataagaa caggacaaat cactgaaaaa tcttggcttt tggcaaattc agaagtagat
     2401 caatatatga agcaaaaata taatcgcctt agtgaaaaac aaagaacttt agtcgatgat
     2461 cttgtgcaaa aaggcgagat agagcttaaa tttaatagca atttcttttt aaatggagac
     2521 tcaaaatctc ctgaaaattc aggaatttta tcttcagttg tagggacttt gcttgttatg
     2581 cttgtttgta tggttgtgag tgttcctata ggcgttgcag cggcaattta cttagaagaa
     2641 tttgcaccac aaaatatcct tacgcatttt atagaagtgt gtattaacaa ccttgcaagt
     2701 attcctagta tcttgtttgg acttttagga cttggagtgt ttatcaatct ttttggaatg
     2761 cctcgttcaa gtgctttagt gggtgggctt actttggcga tcatgagttt gcctattatc
     2821 attgtttcaa ccaaagcggc cttaaaaagt gtggatatca atatgaaaaa tgctgcttat
     2881 gccttaggta tgacaaaggt tcaaatggta aaaggcatta tgctaccttt agctatgcct
     2941 atgattttaa caggttctat tttgacttta gctcaagcta taggcgagac tgcacctttg
     3001 atgattatcg gtatgatagc atttatccct gatgtagcta gttcgatttt tgatccaact
     3061 agcgttttac ctgctcaaat ttactcatgg tcggctatgc cagagcgtgc atttttagaa
     3121 agaaccgcag cgggtattat tgtgctttta ggacttttag ttgtgttaaa tcttagtgca
     3181 atattattaa gaaaatattt tcaaggaaaa ttaaagtgat agcaaaaaca acaaatttaa
     3241 atttatttta tggaaaaaaa caagctttat ttgatatcaa tatgcaaata gagcaaaaca
     3301 aaattactgc actcatcggt gcttcaggat gtggtaaatc cacttttttg cgttgtttta
     3361 atagaatgaa tgataaaatt gcaaaaatcg atggtttagt ggaaattgaa ggaaaagatg
     3421 ttaaaaatca agatgtagta gtcttgcgta aaaatgtagg catggttttt caacaaccta
     3481 atgttttcgt aaaaagcatt tatgaaaaca tctcttatgc accaaaactt cacggtatga
     3541 ttaaaaacaa agatgaagaa gaagctttag tggtggattg cttgcaaaaa gtagggcttt
     3601 ttgaagaggt taaagataaa ttaaagcaaa atgccctagc tctttcaggt ggacaacaac
     3661 aacgcctttg tatcgcaaga gctttagcaa taaaacctaa gctcttgctt ttagatgagc
     3721 caacttccgc acttgatcct attagctcag gtgttataga agagctctta aaagaactaa
     3781 gtcataatct ttccatgatc atggttacgc ataatatgca acaaggtaaa cgcgtggctg
     3841 attatactgc attttttcat ctaggcgagc ttatagaatt tggtgaaagt aaagaatttt
     3901 ttgaaaatcc aaaacaagaa aaaaccaagg cttacttaag cggtgctttt gggtgagatt
     3961 tatacaaaaa caagtatctt tgtattaaaa ttatatcctt aaaaaagaat ttcataagga
     4021 tatagttttg cttgaaacac ttttaaaact aagcgaagag cctttaaaaa gtaagattaa
     4081 ggatttgtat ttttctaaat ttaattatgt aggtgctaag attgattttt gtatcactca
     4141 aaatttagga cttttaggtg aaattaactt gctttgggct gaagccaagc aaggaaaaag
     4201 tgaacttaaa aagtcttttg tacagcttgt gcttaccata ggaaaatata aattttatac
     4261 agagcaaact ccaaatttac tttgtgcttt tgatggagaa aagatagctt ttttaccctt
     4321 tgcttgtttg caagaaattt tttatcaaag cgatataaac tttagtgtaa cgcctagcaa
     4381 tcatacaagt gagcaatttt taaaacttcc aaaagaatta gatagtattt taaatacagc
     4441 gcaaattttt tattatgaaa aaaatgatga agaattaaaa actttcataa aagaaaatct
     4501 tacaagcgaa aatataagta aaattaaaat cgataaaaac aattttgtaa gtatttatca
     4561 taaatggaat aaaatggtta aagatactat cagtattgat tggaatttgg ctaaaaaaag
     4621 cgggattata gatgctgatt tttatttggc tgatttgctt tcaagtgaaa atgaaactat
     4681 cagtcaaaat ttatttgcca ttcttaaaaa agattattat gagtttaata aaacaaaaag
     4741 tgatttaggc tctatcatta acgaacgcac ttcttttaaa gataatcaaa aagctcatca
     4801 tgaattttgg gcgatttacg agcgtcctcc aagggaagaa ttttgggatt atattataaa
     4861 acgcagagat ttgcttgtag atcaagatgt aagagagcga aaaggagcat tttttacccc
     4921 aagaatttgg gtggataaag cttgtgagta tctttctaaa acttttgggg aggattatga
     4981 agagggatat tatatatggg atttagcggg tggaacagga aatttgctag caaattttac
     5041 aaataaaaaa aatatctttt gttctactct tgataaagct gatatagatg tgatacatga
     5101 gcgtataaaa aatggtgcga atttgtttga aaatcatgtt tttcaatttg attttttaaa
     5161 tgatgaattt tttgataagt gtgatgataa gggtaaaatc atccaaaaat caaaattacc
     5221 tttaaatttg caagaaattt taaaagatga aaataaacgc aaaaaattaa taatctttat
     5281 aaatccacct tatgcggagg ctacaagcgc tacacaggtt acaaatacag gaaaaaataa
     5341 agataaagta gcaagagaaa ataaaatttg tgaaaaatat aaagacattt taggaaaagc
     5401 gaacaatgag ctttttgcac aattttttat cagaatttat tgtgagttag aagattgttt
     5461 aatggctagt ttttctaaat taaaatatgt aaattctacc aattttataa aatttagaga
     5521 gaattttaag gctaaatttt taaaaggttt tatggtgcct gctgatacct ttgataatgt
     5581 aaaaggaaaa tttcccatag gatttttgat atgggatatg agtaaaaaag aagaaattaa
     5641 aaaaataaaa cttgatacat ttaataaaaa tgggagtttt ttaggaataa aaacttttta
     5701 taatgatcaa aaagaaagta ttaataaatg gatcaagatt tttgatgata aaaaatcaca
     5761 agagaaattt ggatttatgg gaaacccaag cccagatttt caacataata gccaattata
     5821 tctttctctt aacaaaggaa tagagcattt taatttttac atattctcgc taaaaaacct
     5881 gttaaatggt gctgtatatt tctctgttcg tcatgctata aatgctactt ggataaatga
     5941 tagagatcag tttttatatc ctaatgattt atataaaaat gatgatgagt ttaaaagtga
     6001 ttgtttagct tttatgcttt ttcatggaca aaatcgcata agtgcaaaag aagggataaa
     6061 tcatttcata ccttttagtg aaaaagaact aggtatcacc aaagaagctt ttgagagtga
     6121 ttttatgtat aaatttataa agggcaagat aaaagatgaa aactcacttt ttggtgatga
     6181 gttagtaaag atagaattca gtcttgaagc tcaagagctt ttaaaagcag gaaaagaact
     6241 ttttaagtat tatcacacac atagcgagga taaaggctat cttgtcaatg cttcgtttta
     6301 tgatatcaaa gaattttttc aaggtaggga tgaaaaaggt aggatgaatc gtcctagcca
     6361 agcaaaagac gagcattata aaattttact aagtgattta aacatagctt taaatgcttt
     6421 agctaaaaag ttagagccaa aaatttatga atacggcttt ttaaaagggt aatcatggca
     6481 aaaaaacaac tctctttaac aaaactcagt tttcctatat tttgggattt gctttctaag
     6541 tatttaaccg tgattatcaa taccgctatg gtgtcgcatt attctaattt tcttgtcggt
     6601 gctatggggg ctggaaatca aattttagat ctttttatca ctattttttc atttttaagt
     6661 gtgggttgta gtgtggtgat cgcacaagca attggtgcaa aagatcatgt tttagcaaga
     6721 aaagtgattc atcaaagttt gttcttaaat gcacttttag gctttgtatg cggtgtgctt
     6781 attttatggc atggggagta tttgctttat cttttaaaaa tcccacaaga atcgctcaaa
     6841 gatagcgaaa tttacttaca tatgcttgca atttgtttgt tttttgatgc cataggtatt
     6901 gttttagctg ctattgtaag ggtttataat atggcttatt gggtcatgtt tataggtttt
     6961 ttgatggata tagtggtgat ttgtggaaat tattatgttt tgcattatac aaagtcagaa
     7021 ctttttggag tagggcttag caatattttt gcccgtattg ttgctatagt ggctttactt
     7081 gtgatacttt tttataaact taaaattcat cttaaaatca aagaaatgat aaaacttgaa
     7141 aaagaagttt taaaaaaggt tttaaatata ggaggatttt cagcagggga aaatcttttg
     7201 tggatagtcc aatatactat agcttttgct tttgtagcaa gcttaggtga ggcgagtttg
     7261 agtgtgcaaa cgatttattt tcaaatttca atgcttatca tgcttatagg acaagctata
     7321 agcatagcta atgaaatcat agtaggtaaa ttagtcggtg ctaggtatga aaatatcgct
     7381 tacaaacatg cttggcgtgc tttatatttt agtgtaatag cgagtgcttt agtggcgttt
     7441 ttaaactatc tttgtcaaga ttttactatg caaattttag ggcttaaaga agagctaaaa
     7501 aatttaatga tacctttatt tgctctttca atctttcttg aaatttcacg aacttttaat
     7561 atagttatgg ttaattcctt gcgcgcaagt ggcgatgcta agtttccatt ttttagcgga
     7621 cttgttttta tgatgggggt atctttgcct gtgggttatg tgctttgttt tcattttaat
     7681 cttggaattt taggggtttg gataggattt tgtgcagatg aatttttgcg tggaatggta
     7741 aattcataca gatggaaaag taaaaaatgg caaggcaaag ctctagttta aaatcattta
     7801 tttataaaga tgagtgctat ttttattcta aaaaatgcat aaaaacttta agattaaggc
     7861 taaatgaaaa gggtgaattt gttcttagta ttccttattt ttgcaccttt aaaagtgttt
     7921 atgagttttt agataaatca agttcttgga tgaatgaggc aaaaaaaaga tttgaaaaaa
     7981 aagccttaaa agatgatgag ttaatctttt tagctaaaaa atatcaaatt atttttgatg
     8041 aaaatgccaa aaaaatttat tttgataaag ataaaataat ttgtcaaaat aaagcaaaat
     8101 tggatttatt tttaagacaa aatgctaaaa agatttttac tttttatctt aaaaaatgga
     8161 gtaaaaaaac aggcttattt tacacgcatt taagcattaa aaatatgaaa acgcgttggg
     8221 gttcttgcaa tcacaataaa gcttatatta atttaaattt aaaactcatt caaaaaagtt
     8281 taagagctat tgaatatgtg attttgcatg aaatcagcca cttaaaattc cccaatcaca
     8341 gcaaagaatt ttatactttt atagagtatt ttatgagtga ttttaggcaa agagagaaag
     8401 aatttttaag ttaaaaatgt tatatttata gtttattttt caaaaaaggc ataatatgac
     8461 tttggatttt gattttattt ataatgcaga taatgatatt tttgaatatt tattgcgttt
     8521 ttatgcgaaa aattacaatt atatccttag caaagaagaa aatacttatc atttttctat
     8581 cgatgcagat gaagaaaatt taaagacttt ttgtgattcc ttaaatttaa tgagtcatag
     8641 cgtttttttg aaaaaatttg atgtaaaagc ggggcagggt tttaaccctt gtatgccaga
     8701 ggataaagaa ttttcaagat tttcttatat tactcattta aattctaatg cttatcaaga
     8761 aaaaaaactt ttaaacaaaa acgaatgggg cgtgttttgt gagtgtgaat tttcaagcaa
     8821 tttatcagaa tttgaaaaaa tcaatgaaga aaattttaat acttttttaa atcttgcttt
     8881 tgatttgtta agtcaagaaa aaaagattta tttaaaagat aaaaatggta tttatgaatt
     8941 ttctttgttt aagaacgaat ttataggaga ttttttgctt ccttgtgata ttaaggctat
     9001 aaattcagtt tttgtttgtt caaatgaaaa tttaaaactt cttgcaagtt tggaaaaacc
     9061 tttgatgaag ctaaggctta atgctatgtt tagaaaaaat cacaatcttg attttaatga
     9121 ttttaaaatc agacttgcta gggatttgtt ttgctttgct ttaggtttaa aactttttga
     9181 aaatgaatat aaatttttaa gcgtaaaaaa gatagaagaa tatcaaaaag atttttatat
     9241 cagtgcttta gatgagcaag tggtggtttt ggaaggcttt gaatttatca atgctaaggc
     9301 aagagagctt attttttcta aagaagataa aaatatggca agaatttctt atcttgtaag
     9361 ccgttataaa gaaaatgctt ttattttaga gctaagtaaa gatgatgaag atattttgct
     9421 tatcaacaaa gagcttaatt tacttaaact ttgcttacca aaacacagca aagagcttta
     9481 tgaagagatt aaaaaagatg aaattggtgc aaggctttta gaaaatttta gcaaggaatt
     9541 tcctctttta gatgaaagtt ttgaacttca aaataatttt tattctttgc ttgggttagt
     9601 aggtagagtg ttaaatttag gtaaaaattt acaagagagt gttagcgagc ttttaaaaat
     9661 cgctgatgag tcaaaaatgc ctcgtggagt aaagattgat tatcgtttga aagaagataa
     9721 aagttttgat tatacaagaa ctttaagatc tactatgagt tttatgttag caggtgtgga
     9781 tagtgctaat atcgcttatg gagcggttga gagtttggct tatttcttgc gtgatactta
     9841 tgatgaatta agagagaaaa agcaaagtga tttagcgctt ataagtggat ctttgtttga
     9901 acataaatct ttgcttaaaa atactttaaa acatcttaaa aattgtcagt taagcgatgt
     9961 gccacttagg gtataagatc aaaatttcag gcttggttca aggggtgggt tttcgtccct
    10021 tagtttatga actagctctg aaatcaaagc tttttggaga ggtaagaaat gatggttttg
    10081 gggtagaaat catccttgct tgtgctcaaa aagaatgtga aaatttcata gaaaatttaa
    10141 aaaatcatct tccaccttta gcaagaatag ataagcttat aatgacgcaa atttctattt
    10201 caaactatga gaattttagc attactcctt ctttagagaa tacaaaaagc acgcctatgt
    10261 taagtgattt tgcgctttgt aaggagtgta aaaaagaatt ttttgatgaa aaaaatccac
    10321 gctttttata tccttttatc acttgcacgc attgtgggcc acgctttagt attataaaaa
    10381 gtcttcctta tgataggatt aatacttcca tgcaagaatt attgatgtgt gagttttgta
    10441 aaagcgaata cgaagatcct aaaaataggc gttttcatgc ccagcctatt agttgtccta
    10501 aatgcaaaat caatgttttt cttaaaaatc caaagggtga aattttagcc aaagatcaag
    10561 aagcttttat acaaagtgcg aagtttttaa aggaaggtaa aattttagcc attaaaggca
    10621 tgggcggttt tcatctcatg tgtgatgcgt ttaatgaaga agctttaaaa actctaagac
    10681 ttagaaaaaa tcgccccaaa aaaccctttg ctttgatgtg taaagattta caaagtgcta
    10741 aagaacttgc ctttatagat gaaaaagaag aagctttgct tggtggggtt ttggctccta
    10801 ttgtgatttt aaaggcaaaa aaagcctttt ctttaatcgc tcctgatgtt gataaaatcg
    10861 gcattatgct agcttatacg cctttacatc ttttgctttt tgagtatttt aaaggaaatc
    10921 ttgtggcaac aagtgcgaat ttaagcggag aaagtatcat taaagatgag tttaatttgc
    10981 gtcaaaaact tgataaagtt tttgattttt atttggatta tgatagggaa attatcaatg
    11041 caagtgatga cagcatagct caagtggtaa atggcaaaac tatgtttttg cgtacttcaa
    11101 ggggtttaaa tcccttttat ttggaaagaa attttaataa aaaaggcact tttttagctt
    11161 tgggtgcgga acttaaaaat gaatttgtga ttttttatga aaataaactt ttaatttctc
    11221 cttatatagg ggatttgaaa agtcttgatg tgcatgagag attttttaaa cttttagaat
    11281 tttttaaaca aaattatgat ttgaaatttg atgcgatttt gtgcgataaa cacccgcatt
    11341 ttagctatgc aaaagaattt gaagaaagga ttaaaatttc tcatcattat gcgcattttt
    11401 gtgcggctta ttttgaatac gaagaaaatt ttgcaaaaga tgaaaaggct ttagctttta
    11461 tttgtgatgg aacaggttat ggcgaagatg gtaaaatttg gggtggagaa gtttttgtag
    11521 gaaatttaaa agaatatgaa agaattgcac attttgaaaa tttcactctt ataaatagtg
    11581 atattaaaaa tatacaaaat ttagccttaa gtcttatttt tcattatgat ttagaagata
    11641 aggctaagga ttttttagca aaaattccaa aaattaaact taaaaatctt aaaaaaattt
    11701 attctcattc taacttacaa acaagttctt taggacgcat tatcgatgct tttggaagta
    11761 ttgtttttaa cttagaaaaa agttcttatg aagctcaagt tggcttaatg tgtgaagctt
    11821 tttatgataa aaatcttgat ttttcttata agctttttgt agaaaaaggg caggttaatt
    11881 ttaaaaattt aatcctaggg gctttgcaag atgaaaaaac taaggcgatt acaggtatgt
    11941 ttaatgcctt ggcaaatttt atcatagatt ttagcaaaga ttatgattta aaagtgcttt
    12001 taagcggagg ggtttttcaa aacaaaacct tgcttgaaat tttaaaagct aaaaattttg
    12061 atttttttat acctttaaag tacccttgta atgatagctc catagcctta ggacaaatgg
    12121 tgcatttttt aaatttagaa aaataaagca aatattctaa aaactcataa ttttttaatg
    12181 cttttaaggt taaaatgaaa caaaaaatat ataaggaaag aaaatgtgta aagattgcgg
    12241 ctgctctata aattcaagcc atacgcatgg tcatcatcac gaccaccatc atgaaaatcc
    12301 aagtttaaaa gaaagcaaaa ccatagaagt gatttctaaa attttaagca aaaatgatga
    12361 agaagctaag cacaatagag cgcattttaa tgaagctaac acgctttgta ttaatttaat
    12421 gagttctcca ggtagtggaa aaaccacgct tttagaaagc acgattaagg ctttgaaaaa
    12481 tgaacttaaa attgctgtga ttgaagggga tttagaaacc aataatgacg ctctaagggt
    12541 aaaaaatgcc ggagctttgg cgtatcaaat cactacagga caaagctgtc atttggacgc
    12601 ttttatggtg catgaggctt tgcatcattt agccattgat gatgtggatt tgctttttat
    12661 agaaaatgtt ggaaatttgg tttgtcctgc aagttatgat ttaggagagc atttaaatgt
    12721 ggttttgctt tctgttaccg aaggaagcga taaaccgcaa aaatatcctg tgatgtttaa
    12781 aaaggctgat atagttttaa tcacaaaggc agatttagct catcattttg attttgatgt
    12841 taaagaggcg actaggttga ttaaagaatt aaatcctaga gcagatatta tcacccttga
    12901 tgcaaaaaat ggcaccaata tggagctttg gtataaggtg cttaaactta aaaaggagct
    12961 tttttaatgt gtttgtctat accttctgaa attttagaaa tcgatgagtt aaacaatgct
    13021 ttagtacaaa ctttaggcgt gaaaagaaaa gttaatttgg atttgattga tgaaccttta
    13081 aaacaaggcg attatgtatt aatccatgta ggcgttgcta tggaaaaaat cgacaaagaa
    13141 gctgcactag aaagcattaa aacctatcaa gaaatagtag aaaaaatgaa tagtggagag
    13201 ataaaaagtg atgaaggaga tttgggttta aatgaatttc atcgatgaat ttagagataa
    13261 agaaagcatt ttagctttaa aaaaactcat agaacaagaa cttaaaaatc ctattaatat
    13321 catggaaatt tgcggtgggc atacgcatag tatcatgaaa tatgctttgc cttctatttt
    13381 gccaaaggaa attaacttta tccatgggcc aggatgtcct gtttgtgtta tgccaagagt
    13441 tcgcattgat acagctatca agttagcctc catgaaagat acgatttttt gtactttagg
    13501 ggatctttta agggtgcctg gaagtgaaat ttctttactg gatttaagag ctaaaggggc
    13561 tgatgttaga gcgctttatt ctccgcttga ggttttggaa attgctaagc aaaatttaaa
    13621 caaaaatatc atcttttttg ctataggttt tgaaactact acgcctatga gtgctttact
    13681 tcttcaaaag gttatagaag aaaaaataaa taatgtcttt tttcatatca atcatatcac
    13741 ggttccagca cctgtagaag cgatcatgaa tgatgaaaat gtaaaaatca atgctttttt
    13801 aggtccttct catgtgagtg tgataacagg ttatggtatt tatgagcctt tagcagcaaa
    13861 atttaaaacc cctatagcgg tgagtggttt tgagccagtt gatattttag aaagtgtgtt
    13921 aaatatcata aaacaaagca atgaaggcac ttttaaagtg tataatcaat acaaaagagc
    13981 cgtaagcaaa gaaggcaatg ttaaagcaca aaatttagta aaaaaatact ttagggtgtg
    14041 tgattttgaa tttcgtggct taggacttat taaagatgga ggcttggagt taaaagaaga
    14101 atttagcgct tacgatgcga gtaaaaaatt tgattgtacg gttcaaagta aaaatgaaag
    14161 caaagcctgt atttgtgggc aaattttaag aggtttggcc aagccttatg attgtaaagt
    14221 ttttggcaag gcttgtacgc caagaagtcc tataggaagt tgtatggttt ctggcgaggg
    14281 tgcttgtgcg gcgtattata aatactcaaa ggtgaatgca tgaaaaatat ttccttagcc
    14341 cacggaggcg gtggagaaga gatgaatgag cttttaacta agctttttaa gatctttgat
    14401 aatgaaattt taaacacaaa taatgatgca gcgattttgg gaaatttggc tttaagcacg
    14461 gattcttttg ttttaagtcc gattttttta gatgaagagg ttaatatagg taaactttgt
    14521 gtttgtggtt ctattaatga tgttttgatg gtgggtgcta agccaaaata tctaagctta
    14581 gggcttatct tagaagaagg ttttgagcta gaaaaactag aacgcatttt aaaaagcatt
    14641 aaagaagaat gtgaaaaatg tggagttatg ttagtttgtg gcgatactaa agttgttcct
    14701 aagggcaaag cagatgaaat ttatatcaac actactgctt taggtgaaat catcgctaaa
    14761 aaagagagta aaaatatcaa agcagggctt agcatacttc tttcaggcga tataggaagg
    14821 catggagcca gtgttttaat caaaagaaat gagttagaag ctgatgttaa aagtgattgt
    14881 aaggctttgg ataaagaggt tttagagctt ttagaaaaag atataaaggt tgtagcaatg
    14941 agagatgcta ctcgtggggg gcttagtgcg gttttaaatg agtgggcaaa gcaaagcgga
    15001 aatgatcttt tgatctttga agaaaaaatc atcgttcaag atgaggtttt aggactttgc
    15061 gagctttttg gttatgaagc ttatgagctt gcaaatgaag gcactttcat actgtgcgtg
    15121 gaaaaagaag atgagttaaa agccttagaa attctaaaaa aatacaatgt aaatgcgagt
    15181 attataggag aagttttaga agagaaaaaa gcacgcgtga tcttacaaaa cgcttatggg
    15241 gcaaaacgct ttttagaaag ccctaaaggc gaacttttac caagaatttg ctaatgcacg
    15301 aattaagtat agtagaatct ttaatcgaac tttgtgaaga aaatgcctta aacaataagg
    15361 cttgcaatgt acaagaaatt tatgtaaaaa ttgggcgttt aagcggtata gaagtggatc
    15421 tttttaagcg ttgttttgaa acttttaaag aaaactcaaa tatttgtaaa aatgctaaac
    15481 tttttataga acttgcccca cttgaaattt tatgcttaaa atgtgatcaa acaagcattt
    15541 tagaagaaaa tgtttttaag tgtcctaaat gtcaaagtat agaatacaaa atcacacaag
    15601 gtgaggattt acaccttatg cgacttgtga tggagtgaat caaaaaattg attttttgca
    15661 aaacgataat ctcttaaata aagaatttta gggaaatttt acaagaaatt taaagagcaa
    15721 aataagaaat gagattgtca ataatctaac tttttataat ccttgcaagc tttagcaaag
    15781 tggcgattag aaattctttt ttagcaagtt tggaattggt tttaagttcg tattcacttt
    15841 taagcaaaag gttaaaaatt tctttataat gtttgatttt taagctaaaa gcttgttcgt
    15901 ttaaattttg tgctacttga ggcggaggag tataacctaa gagttcttta aaatccactt
    15961 tcccataaat tttagcataa agagcaattt taaaaagacg gtaaaaggca gaacttaaag
    16021 agttaatcaa agcaatttca ttaaaattat ccaaaatctt ctcaagctca tttttaaaat
    16081 cggctctttt taaaatcttt tcaaagaagc tttcaaaact tcctatgttt aagctataac
    16141 aatattgctc tatggttttt tcatccactc ttaagccgct gaatttatta agctcgctag
    16201 cagcaagata caaattctca tcaaagcttg taaaaagggt aaataaagca ttttgagtga
    16261 tttctatatg gagttgtttt gcttttatgc ttaaaagctc tatcccttct cttgcgttat
    16321 tggccttgaa aaaacgcaca aaattaggag aaaagatttt ttctatatcg ctttgtttag
    16381 agctttcatc gtaaagttct aaaagtaaga aattgtcttt attgttttta caaagctcaa
    16441 ctaaaacttt aagttctttt gtgggaattt ttttagaagt tttgatttct aaaagctttt
    16501 tttcgctaaa aagcgaacct ccgcttagaa aatcacttgc acgagtaaag ctgtattctt
    16561 caaaaaataa ttttaaaatt tcatccgctt ggtatttttc cttgataaaa tcagcataaa
    16621 gctcactttg aaaattatca gctccataaa gaaagaaaaa attatcaatt tgatttttgg
    16681 aaagtaaatt ttgaagttct tttctataca ttactttcct ttccaagtct ttgggtggtt
    16741 tttgcataaa tttttgccat gatgatgtca gcttctaaaa tttgcacttc tacgctttct
    16801 agtaaattta cccgcgtatc ataaaggatg atatcagctc ctttgatctc atcatcaagt
    16861 tttgctatac aaattccatc attttgcact actagggctt taaatttttt gcctatattt
    16921 ttagctgccc atctcgcaaa ttttctatcc ataaaatcat aagcgacttt atcagcctct
    16981 ctttcaagca cgctaaggtt ttcgcaagtg ctttgtatat ttaaaagtag gtaattaaaa
    17041 agtttttcat cttttttttg tttagctttt aaaagtctat gtaagataag atcagaatac
    17101 ctgcgtatag gacttgtaaa atgtgagtat ttgtcaaaac ctaaaccaaa atgccccccg
    17161 ttttcgctag aatactctgc ctttttttga gctttaatga tgagtttatc cacttccgct
    17221 cttaagccaa gctcatcggc taaagcttgt atatcgcgta taagctcagg caggttaggt
    17281 tttggtttta catcgattcc aagctctaaa agttcattta aaagtctatc tatctttttc
    17341 atatctgcac tagagtgatt tctaaaaaca cctacatcga tgagttttgc ggcggctttg
    17401 ttggctaaaa gcatacaatc ttcgattaaa ttatgcgaag gcgtgtcttt ttcaaaaatc
    17461 gtgcttttta gacttaagtt ttcatccaaa ttcatcctca gttcttcagt gcggaattca
    17521 aaggcattct taagacgatt tttgcgtaaa gtttttgtga tttcaaaaag cttataaagc
    17581 caagaaagtt cttttaaatc tggcttttga atcaaaattt catccacttc atcataatta
    17641 aaacggcgtt ttgagttgat gatagtttca aaaagttctt cttttacgac tttgcagtct
    17701 aaatcaagtg tgattttaaa acaatacgct aagcgatcta aatgaggttt taaagaacag
    17761 atattttcac ttaaaggacg aggtagcata ggtatagcaa tatgtggaaa ataaatagaa
    17821 aatccacgat ttcttgcttc tttatctata gcactataag cataaacata ttcgctaaca
    17881 tcagcaatag ctacataaat ttctcgtttt tgagtgtcaa aataaatcgc atcatcaaaa
    17941 tcttttgcat gtataggatc tatggtgcaa aaaggcaagg ctcttaaatc catgcgattt
    18001 tcatacatac tcgcatcaac actatcgccg tttgctagag cttctttgat gcaagcgtcg
    18061 ctaaattcgt tatttttatt aaaaagagct aaggagattt tttcatctac gctttcatca
    18121 tcgatatgtc ctaaaacttc tatgatattg ttattttcat tttctatttt taaaattgtc
    18181 cctaaaggta gtgcttttaa ggatttttga gaagctttta aggtggtgct taatcctgtt
    18241 ttgatattca ttccaagcac ggcttcgcca taccttttgg tgatcactaa agaggtttca
    18301 ttggctcttt ttagaaccaa aatcaccttt gcactggggc gttttttctt taaaggtaga
    18361 agttttactg caactatatc tttatagttt gcgcctttta ggtttttgtt ttctatcaaa
    18421 agatcttttt tgaaactttc atcaaagcat tgtaaaaaac ctgtgccttt actcgaaata
    18481 tcaagtactc caaaggcaaa accattgtta agatagtatt tgtttttgtg ttctttaatg
    18541 atatgattgg ttaaaagttc tctgaaaatt tgtttaaatt cattgtttac ttcgtgagag
    18601 ctaataccat aactaagact gtttaaaaat tctttcactt ttgatacttt atgatttttt
    18661 gtaaaattct tacataaagt ttataaaaaa aatatgaaat ttatacttta attgctataa
    18721 taataccttt aatttttgaa tttttaagga gtgaatatgg ctattacagt atattatgat
    18781 aaagattgtg atttaaattt aatcaaatca aaaaaagtag caattatagg ctttggctct
    18841 caagggcacg ctcatgcgat gaatttaaga gataatggcg taaatgtaac tatcggactt
    18901 cgtgaaggta gtgtaagtgc tgttaaagca aaaaatgctg gttttgaagt ggtgagtgtg
    18961 agtgaggctt ctaagatagc ggatgtgatt atgattttag ctcctgatga aattcaagca
    19021 gatattttta atgtcgaaat aaaaccaaat ttaagtgaag gcaaggctat agcttttgca
    19081 cacggtttta atatccatta tggtcaaatt gttgttccaa aaggtgtaga tgttatcatg
    19141 atagcaccta aagcaccagg tcatacagta agaaatgaat ttactctagg tggtggcact
    19201 ccttgtttaa tagctatcca tcaagatgaa agcaaaaatg ctaaaaattt agccttaagt
    19261 tatgcaagtg cgatcggggg tggacgtaca ggtattatag aaacaacctt taaagccgaa
    19321 acagaaacag atctttttgg tgagcaagct gtgctttgtg gtggacttag tgctttgatc
    19381 caagcaggtt ttgaaacttt ggttgaagca ggttatgaac ctgaaatggc ttattttgag
    19441 tgtttgcatg aaatgaaact cattgtggat ttgatttatc aaggtggtat tgcagatatg
    19501 cgttattcta tttcaaatac tgcagaatac ggcgattaca tcacagggcc aaagattatc
    19561 actgaagaga ctaaaaaagc gatgaaaggt gttttaaaag atatacaaaa tggtgttttt
    19621 gcaaaagatt ttatcttaga acgccgtgca ggttttgcta gaatgcatgc agaacgcaaa
    19681 aatatgaatg attctttgat agaaaaaaca ggacgcaatt tgcgtgctat gatgccttgg
    19741 atcagtgcta aaaaattagt agataaagat aagaactaaa cattgtcaaa gaaaaaatta
    19801 gttcaaattc agcgttattt aatcatagct atactttttt tactttgcat agctttagct
    19861 ttgggaattt tagtaaaata tcaaaattcc caagatgttt cttctgttaa gccggattat
    19921 tttattgata agcaagaaga tttaatttca ttaaataaag atcattatga aattggtatt
    19981 tttcaagaga atgagtttga taataataaa tctgtaagta ttttagagca aaaaattcaa
    20041 gaaattgatg atttaaatac aagtttaaat gagcaaaatt taagcagtgt ggagcagaat
    20101 ttaagtttag agcaaaatca gagtttagaa caaaatttta ttctaaaaga tacaaattta
    20161 acccaagatc aaaatttaac ttttaatgaa gatattcatt taaataaaat ttctaaaaaa
    20221 ccaaaacttg ccattattat cgatgatatg gcaaatgcaa gtcaggttag aggtttaaaa
    20281 gctttaaatt taaagttaaa tccttctttt tttccgccag ataaaaacca tagcgaaacg
    20341 ccaaaacttg ctttaaaatt tgatttttat atggtgcatt tacctttagc agcaattaat
    20401 tacaataaac ccgagcttga tactttaaat ccaaatgata gcaaagaaag aatttttaaa
    20461 aaaatcaagc aaattaaaaa agattttaag gatttaagat atatcaataa tcacacggga
    20521 agtttattta caagcaatga aaaagcaatg aaaaaacttt ataaagcctt tgaaaaagaa
    20581 gaattgattt ttgtagattc caaaaccata gcaagttcta aagcgcctaa ggtagctaaa
    20641 gccttggggc aaatttatat acaaagagat gtatttttag acaatcgcga tgatgttgct
    20701 tatattaaaa aacaacttat ggaggcagta aggcttgcta agcaaaaagg ctttgcgata
    20761 gctataggac atcctaggaa aaatactttt aaagccttag agcaaagcaa agatttgctt
    20821 aaaagtgttg agttagtgta tttaagtgag atttatgcaa agtgaactac caagcgctta
    20881 tctagagctt tttaaagagt tgaaaaatcc tcctaaaaaa ctttattata aaggaaattt
    20941 aaaactctta gaacaaagaa agatagccat tataggctct aggcgtatga gcacttacac
    21001 taaaaattgc gtttttgagc tttcaaattt gcttaaaaat tcaaagataa gtgttgtaag
    21061 cggaggtgct ttgggtgttg atatcagtgc aagtatggcg gctatgccaa gcactatagg
    21121 ggtttttgcc aatggtcttg atgaaattta tcctagaagc aatgaaaaaa ttataaaaca
    21181 aatttatgaa aatgctttgg ctttaagcga aaacgaatcc cactataagc ctaagcctta
    21241 tgatttttta cttagaaata ggctgattat cgctttgagt gaagccgttg ttgttgcgca
    21301 agcagatttg caaagcggct ccatgcaaag tgcaagactt gctttggagc ttaataaacc
    21361 tttatatgtt ttgccccaac gcaaaaatga aagcgatggg acaaatttac tcttacaaga
    21421 aaaaaatgcg aatttgcttt tagattttaa agaatttgca agttgttttg gggttataga
    21481 agaagaaaag gatgaatttt tagacttttg tagacagggt gtgagtgtgg atgaagcaac
    21541 tcaaatttat ggagaaaaag tctatgagta cgaacttgaa ggaaaaattt ccatagaggg
    21601 tctttttata agggttttag tatgagagct ttggctttag atgtgggttt aaagcgtata
    21661 ggcgtggcgc tttgtatcga taaaatcgcc attcctttag agggtataat cagaacaaat
    21721 cgcaatcaag ctgcaaatga agttaaaaat ttacttcaaa ttcatgatat ttctttattg
    21781 attgtaggta ttcccaaagg aggttcaagc gaagaagaaa tgacaagacg cattaagcat
    21841 tttgtatctt tgcttgaatt cgataaagaa attcgctttg tagatgaaag cggaacaagt
    21901 aaagaagctt taggatatgg tgtggctaat acacgcaaaa aagatgccaa gctagactct
    21961 ttagcagctt taatcatgat aaaggattat tttggaatat aatctagcca gtatttataa
    22021 tgataaagaa tttgaaaatc ttaaaaattc ttttaaattg cccaaaaaaa tatgctgttt
    22081 tataaatcgc ttaaaatgtg ataatttaac acttgaaaga gaatttcaag atttgaattt
    22141 agagtatgaa aagcttaacg aatactgcta tctttttaag gcttgtgata aaagtatttt
    22201 gagttctatg caagctttta atgaatttaa attttatata caaaattatg cgtcttattt
    22261 gtgcgcttta aatttggatg taaaagcagg acaaagcgtt ttagatatgt gtgcagcacc
    22321 tggtggaaaa agtatcaatc ttgctaattt tatgcaaaat gaaggctatc tagcttgcaa
    22381 tgaagcaagt aaagataggt tttttacctt gcaaaagaat ttgaaaaatt atggagtaaa
    22441 agctcgagtt tttatgaaag atggtaaaaa tataggaaat ttatgccctt taaaatttga
    22501 taaaatttta cttgatgcac cttgttctac tttagcaaaa atgggtttag agctggaaaa
    22561 aagctccaaa gagattaaaa acatagccaa acttcaaaaa aaacttttac attctgcgct
    22621 caaggctttg aaagtaggcg gagagcttgt ttatagtact tgcactttta ccaaagagga
    22681 aaatgaagaa gtgatagaaa atgctttaag aagtgatttt gatatagagc ttttggatat
    22741 aaatttagaa aatgctttgg caaaaaatgg gcaaagtagc gaatttgaag cgacttctaa
    22801 atgtaaacgc attttacctt gtgaagaata cgacggattt tttatcgcta aattaaggaa
    22861 aaattgattt taattcttta aggctaagtt cacatagaag ctaaaatttc attatatatt
    22921 aaaattattc acatcttcaa gtaaattcac aaaaaaactt aaaaaacaat aaatattttt
    22981 ttagagaatt taaaacttaa agtcctattt ttagggcttt gaaaagaaaa tcacatcgtg
    23041 aaaaggctgt gaataaaaaa taaatttttt aaaacttaaa aagataattt cactcgtaat
    23101 ttctaatttt ttctagctta ggtgctataa caaaacgaca atagctttga ttgggattgt
    23161 gtataaaata atgctgatga taatcttctg ctttgtaata tttttgaagt ttataaattt
    23221 gtgtgacaat cggaagtgaa aaattaactt gttctttttt tataaaatct tctatggtat
    23281 ttttatcgct ttggttttca taaaaaattg ccgaacgata ttgaattcct atatcagctc
    23341 cttgtttgtc aaagctagtt ggatcatgaa ttttaaaaaa taagcttaag atttgttcta
    23401 aggaaatttt ggtttcattg taaatgattt taaccacttc tatattgcca tcgccattgc
    23461 aaacactttc atagctagga ttgtcatttc cgcccgtgta gcctacttca gtgtgtataa
    23521 tgccttcaaa attttcaaaa gcagcttcta cacaccaaaa acatccgcca cctaaaatga
    23581 tatttttcat aaagaatttc cttaaagatt tagcctataa aaggctaaat aaagaattta
    23641 tttgtagttt ttaatcgctt tttctaaaat ttcaacagca gctttttcat ctttgaaatc
    23701 ttgcactttt acccatttgt taggttctaa gattttataa gtttcaaaga aatttttgat
    23761 tttatttaga gttgcttgtg gtaaatcagt ataggttttg atattgtcat atcttgcgtc
    23821 gattttagaa tttggcacag caagaagttt ttcatccatt ccactttcat cttccatgat
    23881 taaaacaccg attaaacgac atggaataac tgcacctgct tggatagggt attcatttaa
    23941 gactaagatg tccacaggat caccatcatc agctaaggta tttgcgataa aaccataatt
    24001 tgctggataa aacatcgcgc tagccataac gcgatccacc atgatcgcac cgctatcttt
    24061 atcgatttcg tatttaatgc ttgatccgta tggaatttcg attacagcat tgattttgtt
    24121 tggaatatct ccgattttga ttttgcttaa gtccattttt ttatccttat atactttgaa
    24181 tttttttaat cagttctttc atatcagcaa cgataggttc gatagtgcgt tctccatcga
    24241 tgatgaaatg aagttttttc ttttggtaaa aagaaatgat ttcttctagt ggctcggtat
    24301 acactttcat tctattataa aacacttctt cgttgtcatc tgcgccacga cttcttccta
    24361 aaacgcgatc tttagctact tgttcactca ctcttacttc gattacgcct tttagacaaa
    24421 tttcattttg ctcgcttaaa actttatcaa attctaccat ttgctccaca cttcttggat
    24481 agccatcgat aataactgtt tttgtaggag cagcttttag cgctgaaact atagtattta
    24541 taactacatc taatggaact aaatttccct tagaaataaa accatctatg gttttgccaa
    24601 gttcacttcc gcttgctact tccgctctta aaagatctcc tgtagaataa tgagtaacat
    24661 ccgcatcagc ttgtgcaatc aaactagcat ctgtagtttt tccgcttcct ggtgcaccta
    24721 taattaaaaa taattctttc attttatatt ctcccttaat ttgattccta attctctcat
    24781 ggtttcattg ctagcagctg aaggagcatc cgtcatcaag cattgtgctc tttgagtttt
    24841 tgggaatgct ataacttctc ttatgctatt tgctcctgtt actagcatga taagtctatc
    24901 aagccctata gcaatacctc catgtggtgg agcgccaaaa cttagagcat caagtaaaaa
    24961 tccaaatttt tctttttgct gttcttcatc gatattgagt aatttaaaaa ctttttgctg
    25021 gatatcattt ttatgaattc ttatactacc accacccagt tcaacgccat taagtacaac
    25081 atcataagcg atagatgata tttcttctaa gtcggcctca tcgatatttt ttggcatagt
    25141 gaaagggtgg tgcattgcag aataacttcc atcatcattt tgttcaaaca taggaaaatc
    25201 aactacccat aaaaattcca aagcatcagg gttgattaaa ttaagttctc cagctaggaa
    25261 aattctaaac cttcccatat aatcaagcac agttttttta acccctgcgc caaaaaatac
    25321 cacatcgcct acttcaagtt cacaacgctt aataagttcg tttaaatcct cttcgttaaa
    25381 aaatttgcaa agtggacctt taagcccatc ttctttaact tgtataaagg ctaagccttg
    25441 agctccaaat ttgcgtacaa attcttcaaa tctttgcatt tgtctttttg aaaagatagt
    25501 atcacccttt ggaacgcgta aagctttgac acgatttttt ttgctatctt tggcaatatt
    25561 tgcaaaaatt tcattatttg actttgcaaa gatatctata acatcgatca gttttaaatc
    25621 aaaacgcaaa tcaggcttat cacttccgta gttttccata gcctctttgt aaggcatttg
    25681 tctaaaaggg atttgaattt ctttaccaca agctttaaaa atatctttta aaaaggtttc
    25741 agccgtagca atcacatctt tttgctcgca aaaactcatt tcaacatcaa tttgtgtaaa
    25801 ttcaggctga cgatctgctc ttaaatcttc atctctaaag catttagcga tttgaaaata
    25861 acgatcaaag ccgctacaca ttaaaagttg tttgaaaagt tgtgggcttt gaggaagagc
    25921 ataaaattct ccttgatgta cgcgtgatgg tacaagataa tctcttgctc cttctggagt
    25981 ggctttggtt aagatagggg tttcaacttc taaaaatccc atatttgcta aagaatttct
    26041 agcagctata caagctttgg agcgtagagc aaaattttca taaagcttag gatttcttaa
    26101 atctaaaaag cggtacttaa ggcgtaattc ttcatttaca ctttcatcac ctatgccaaa
    26161 aggagggaca gcactttcat tttcgataat gagcttgctt actactactt caatttcacc
    26221 ggtttttaat ttaggatttg taagtccttc tcctcggggt cgaatttttc cttcggctat
    26281 taaaacaaat tcatttcttg tgcgagaggc tatttcatga gcttctttgc tatcatttgg
    26341 atcgcataca agttggataa taccactacg atctcttaaa tcaataaaaa ttacgccgcc
    26401 atgatctcgg tagctattaa cccagccgca aagtttaacc acttcgccta tgtgggtaga
    26461 atttaagtct gtattgtaat gacttcgcaa aatttttcct tgaaaattaa ttt
//
LOCUS       DBBXRO010000010        24525 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.010, whole genome shotgun sequence.
ACCESSION   DBBXRO010000010 DBBXRO010000000
VERSION     DBBXRO010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24525
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.010"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            158..919
                     /locus_tag="ACJFEZ_000298"
     CDS             158..919
                     /locus_tag="ACJFEZ_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HGG0916446.1"
                     /translation="MHQPTLRVLNILELLAKEKLTLSTIAKKLNIPAGTLWPILQTLQ
                     EKQYIRCDLKNKSYYLDFKILELGYNIKSENSIFEMIKKHMKNIRNLTNQTCQMGILK
                     EENVLYLEKIDANNPVQLKSFIGTSYPAYATSLGKALLSNKNKEELKKIYPNNFEKIT
                     ENTLKNIDELYQQIEQIKKEKIAIESGEINPQIECMAIGIEHKNKIIAAISISYLIFY
                     SNETFREKNKKILLEEKNKIEKALKIHFNDLEELY"
     gene            complement(944..5494)
                     /gene="rpoC"
                     /locus_tag="ACJFEZ_000299"
     CDS             complement(944..5494)
                     /gene="rpoC"
                     /locus_tag="ACJFEZ_000299"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HGG0916447.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKMGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVTENMWNKVLKKKDIAALVDHVYKQGGLQ
                     TTASFLDKLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKTTNNTLSRDMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITVEDCGTHEGVEINEITADSSIIETLEERILGRVIAEDVIDPITNSVLF
                     TEGTLIDEEKARILGESGVKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKDI
                     VANRRNAAILLVEPKIKAPFKGIINIENIHEDVIVSIKDKKQEAKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGAEVEENESIVEMIKEGWNVPNRIPFASEILVKDGDPVVQ
                     NIKAGEKGILKFYILKGDGLDRVRNIKKGDIVKEKGFFVVVADENDREAKRHYIPRES
                     RIEFNDSEEVNFDSIIASAPKQEKSVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSADE
                     QIDEATGKRSLVINEYLPSGVRPTLIIAGKGDKAVRYQLEPKTVIFVHDGDKISQADI
                     LAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERLIIQ
                     AEDGTSAEYLIDKSKHIQVREGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISEI
                     QQVYRGQGVVISDKHIEVIVSQMLRQVKIINSGHTKFIEGDLVSRRKFREENERILRL
                     GGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVIL
                     GRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(5487..9623)
                     /gene="rpoB"
                     /locus_tag="ACJFEZ_000300"
     CDS             complement(5487..9623)
                     /gene="rpoB"
                     /locus_tag="ACJFEZ_000300"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HGG0916448.1"
                     /translation="MCNMLDNKLRNRLRVDFSNISKQIEIPNLLQLQKASFDYFLNLE
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGIKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVVNKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPSDFMDRIEYDIKDEKGNIIHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     EIANDLANGVDAAIINSFAQDNETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFVKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFATPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(9734..10111)
                     /gene="rplL"
                     /locus_tag="ACJFEZ_000301"
     CDS             complement(9734..10111)
                     /gene="rplL"
                     /locus_tag="ACJFEZ_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HGG0916449.1"
                     /translation="MAISKEDVLEFISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     AAGGAAAAAEEKTEFDIVLVDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKADAEEAKKQLEEAGAKVELK"
     gene            complement(10129..10608)
                     /gene="rplJ"
                     /locus_tag="ACJFEZ_000302"
     CDS             complement(10129..10608)
                     /gene="rplJ"
                     /locus_tag="ACJFEZ_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HGG0916450.1"
                     /translation="MTRSEKVEIIAKLQEEFKISEAIVVCNYKGLSTKKLEELRNNAR
                     ENNVKVQIIKNTLANIALNNSGKTGLVLKDTNVYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVRALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(10757..11458)
                     /gene="rplA"
                     /locus_tag="ACJFEZ_000303"
     CDS             complement(10757..11458)
                     /gene="rplA"
                     /locus_tag="ACJFEZ_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HGG0916451.1"
                     /translation="MAKITKRLKELSQKIDVSKEYALNEAIETVRNLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLIE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNISTFIKAINKHKPAAAKGRYIKSAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(11516..11941)
                     /gene="rplK"
                     /locus_tag="ACJFEZ_000304"
     CDS             complement(11516..11941)
                     /gene="rplK"
                     /locus_tag="ACJFEZ_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HGG0916452.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11967..12500)
                     /gene="nusG"
                     /locus_tag="ACJFEZ_000305"
     CDS             complement(11967..12500)
                     /gene="nusG"
                     /locus_tag="ACJFEZ_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HGG0916453.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(12514..12693)
                     /gene="secE"
                     /locus_tag="ACJFEZ_000306"
     CDS             complement(12514..12693)
                     /gene="secE"
                     /locus_tag="ACJFEZ_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HGG0916454.1"
                     /translation="MEKLITYFKLSKVELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWIMSSIVSAIV"
     gene            complement(12712..12787)
                     /locus_tag="ACJFEZ_000307"
     tRNA            complement(12712..12787)
                     /locus_tag="ACJFEZ_000307"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12752..12754),aa:Trp,seq:cca)
     gene            complement(12799..12957)
                     /gene="rpmG"
                     /locus_tag="ACJFEZ_000308"
     CDS             complement(12799..12957)
                     /gene="rpmG"
                     /locus_tag="ACJFEZ_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HGG0916455.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNGKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(13010..14209)
                     /gene="tuf"
                     /locus_tag="ACJFEZ_000309"
     CDS             complement(13010..14209)
                     /gene="tuf"
                     /locus_tag="ACJFEZ_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HGG0916456.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGIVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(14270..14344)
                     /locus_tag="ACJFEZ_000310"
     tRNA            complement(14270..14344)
                     /locus_tag="ACJFEZ_000310"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14310..14312),aa:Thr,seq:ggt)
     gene            complement(14440..14516)
                     /locus_tag="ACJFEZ_000311"
     tRNA            complement(14440..14516)
                     /locus_tag="ACJFEZ_000311"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14480..14482),aa:Gly,seq:tcc)
     gene            complement(14523..14608)
                     /locus_tag="ACJFEZ_000312"
     tRNA            complement(14523..14608)
                     /locus_tag="ACJFEZ_000312"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14572..14574),aa:Tyr,seq:gta)
     gene            complement(14669..14744)
                     /locus_tag="ACJFEZ_000313"
     tRNA            complement(14669..14744)
                     /locus_tag="ACJFEZ_000313"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14709..14711),aa:Thr,seq:tgt)
     gene            complement(14879..15616)
                     /locus_tag="ACJFEZ_000314"
     CDS             complement(14879..15616)
                     /locus_tag="ACJFEZ_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HGG0916457.1"
                     /translation="MSILKIKNLQKYYGFHHALKNINLEVKQKEVVVILGPSGCGKST
                     LLRCINGLEEIADGVIEIGQDKIDKNFKDWTRVRQKVGMVFQSYELFEHLSVKDNILL
                     GPLKVQKRAKEEVLQEAKIWLEKVGLAHKIDAYPKELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVILNLAKDGMTMLIVTHEMGFARAVADRIIFMDNGEIIE
                     ENTPDGFFENPKSERAKKFLNLFDYHK"
     gene            complement(15618..16274)
                     /locus_tag="ACJFEZ_000315"
     CDS             complement(15618..16274)
                     /locus_tag="ACJFEZ_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0916458.1"
                     /translation="MFDLLNPDTLSRLWKGLYITLEISIVSIIITSFGGLFLGILMSL
                     KNRYIYILCRFALEFVRVMPLLVWLFMVYFGLSRWLGINLSSVSSAIIVFSIWGSFEM
                     MDLVRTSLKSIPKHQYESAASLGLNKAQSYFYIIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFNNKNDLAPFIIYGLIFFIFFLICYPVTLYSKKLEKKWS
                     "
     gene            complement(16267..16968)
                     /locus_tag="ACJFEZ_000316"
     CDS             complement(16267..16968)
                     /locus_tag="ACJFEZ_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0916459.1"
                     /translation="MDFDFILANSNAFIAAAWLTLKLSFFGIIFSIIIGFFCILMSYF
                     KITIMEAFCKVYIEFSRNTPLLIQLFFLYYALPKFDIHLEQIPPLNLICLSVDEALRP
                     AFACAIVGLSFLGGSYMAESFRAGFEAIKKQQFEAGLSLGFTKLNNLRYVIMPQALGV
                     CLPGISANIVFLIKETSVVSIIALPDLVTVMKGLNSLTYKTDELLLLLFLGYLCIILP
                     ISLFLFFLEKRFSNV"
     gene            complement(16979..17575)
                     /gene="nssR"
                     /locus_tag="ACJFEZ_000317"
     CDS             complement(16979..17575)
                     /gene="nssR"
                     /locus_tag="ACJFEZ_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HGG0916460.1"
                     /translation="MQEYLDFLKGIGKIRKFEKNNILFFEGEKALKFFILLKGRVRVY
                     KSTAGEKEITLHYFTPPNFIAEMPTFKRLRYPANAICEEYCEILEIDFEDFETLCSQN
                     KEFNFLLISSLFEKIKILEKKLLENSLDLKSKLARYLLENEKNLAQISQRQIAVDLSV
                     RAESLSRILKEFKNSELIETKKGKIEILDKEGLKKGLW"
     gene            17657..18043
                     /gene="ctb"
                     /locus_tag="ACJFEZ_000318"
     CDS             17657..18043
                     /gene="ctb"
                     /locus_tag="ACJFEZ_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HGG0916461.1"
                     /translation="MKYETINQESIAKLMELFYDKIRKDKDLGPIFNNAIGTSDEAWK
                     EHKAKIGNFWAGMLLGEGDYIGQPLKKHLDLPPFPQEFFGIWLGLFEESLDKIYNNEE
                     MKNVILQRAQMIASHFQNMLYRFGGH"
     gene            complement(18046..19860)
                     /gene="recG"
                     /locus_tag="ACJFEZ_000319"
     CDS             complement(18046..19860)
                     /gene="recG"
                     /locus_tag="ACJFEZ_000319"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HGG0916462.1"
                     /translation="MKIKENDFDFFKKLKIKSAIDLALILPKKIENLSPSKTPKENEL
                     CTQKIIIKSIHSKKGQLFGLGFCKEWSQDISFVFFHPRAWHFGICKIGKELILNGKLT
                     RFGHVWQFNNPKILTSFAGFAPKYQIQGLQDKKISEFIHKYLNYENLKESGIEDKYIH
                     FLLNLHTYDEKSFLMFENLERFEKDLKYIEIYNFLKRLKAKKSHFKAYEIEIFNIANW
                     LKNLPFSPTRDQLNALKDIEQDLGSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILANQLYEEAKKLLPEFVDILFIKGGKKEKDLEEKIKKANLIIGTHALIHLQ
                     SHNAVLVMIDEQHRFGSAQRQQIYSLNENELAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKEMPFKKDITTLCIQNEGFAKLSEKIKEEIAQNHQIIIIYPLVNPSDKIPYLSLEQ
                     ARRYWEDNYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSTIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFIQHGNEFKYFDFSKDEYILEKAKKDLMEI"
     gene            complement(19850..21070)
                     /locus_tag="ACJFEZ_000320"
     CDS             complement(19850..21070)
                     /locus_tag="ACJFEZ_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HGG0916463.1"
                     /translation="MQNLEVSRVKIPFIFEENNDFPIVILKLVFRNCGRSYDEIAGLA
                     KMFARILNEGVDDSFFKELEFKAVNLEASSGFESLEINLSCLKENFEFALKHLENLLL
                     NPRFEEKILEKLKINALGELASKNSDFDYLAKNLLNSEIFECKEFQSPNDGDEKSIKQ
                     ISLSDLESFYKKNINLSNLVVILGGNLAQEKAKGLLNKLLAKLQKGSQNSQKTYEINS
                     KNKDIIQIRKESEQAYIYFAAPFFTKFNDKDFYLAKIALFILGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNASFTRVFGYLQTKNESAKEAKKIVKEVFRDFVKEGVSQNELVQA
                     KNFLIGSTPLRYESLSRRLSISFNEYYQGLPKGYYKEELKLIEKVELQELNAYIQKHN
                     EILDLNFASIANEN"
     gene            complement(21070..22116)
                     /locus_tag="ACJFEZ_000321"
     CDS             complement(21070..22116)
                     /locus_tag="ACJFEZ_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HGG0916464.1"
                     /translation="MKRLDKEEALYLLRNANLAELGEIAYQRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISISEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRRAHEIGMKSTATMMFGTVESDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSENTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIKSLGEN
                     PAKRNTAYEILERF"
     gene            22188..23375
                     /locus_tag="ACJFEZ_000322"
     CDS             22188..23375
                     /locus_tag="ACJFEZ_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0916465.1"
                     /translation="MNYIDLLKNNKNIRILTLVQFIVYFGAWFSQTGVFTLLVSLNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELVSIFCLIFVTSLSML
                     WLLFILIFVRLCVASIYFQAEMSLLAKILNPKELKLANEMHSVIWAVSYTASMASAGI
                     FINFFGIKAAFLFDCCLIIIGILFLTKLHIPHFKQKIQNKFFILIKEGFLYVLQNKII
                     LHLIILHAFIGLTAYETLVTLLAQHEYKEVLSAALVIGFLNAIRALALAFGPIFLSKI
                     TNNKNVFFLYLGQGLGIILWALTQFNFYISFIGLIAAGFCTSSLWAYTYTMIQKNCDK
                     TYYGRVIAYTDMVYLSFSALISQLMGLLFEQGFKLAIITALLGVVFIFAAFYWRWFDK
                     KYL"
     gene            complement(23402..24490)
                     /gene="nusA"
                     /locus_tag="ACJFEZ_000323"
     CDS             complement(23402..24490)
                     /gene="nusA"
                     /locus_tag="ACJFEZ_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HGG0916466.1"
                     /translation="MERIADIIESIANEKNLDIESVKEKVIIALINTAKRIYGQEYDF
                     FVDRKNLNLYQKITVVADNDERLNENKESYIEFSKAKKEAPDVEIGDELTYECSLENL
                     GRTAVNILHKELEYHIQKLLEQTIFEKYKNKVGQMVFGNVVRIDNEENTYIEIDELRA
                     FLPRKNRIKGEKFKVGDVVKAVIRRVYTDKGIKMELSRTSPKFLECLLEAEVPEIKDG
                     YVSVVKCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFS
                     NEPEILIARALAPAIVSSVKIENEKAIVTLNSEQKSKAIGKSGINIRLAGMLSGYEIE
                     LNEVNARTTSNTLSNEEALKNLQDLFKI"
BASE COUNT         7785 a         4736 c         3270 g         8734 t
ORIGIN      
        1 ttaagaatat ggtgtaaaat tcacattcca tccttaataa ctaccgattc ttacaaaaaa
       61 ttatcgaaat ttatcaataa ataatttttt tattttgtgt tactaaaagt aaaaattatg
      121 ctagaattta taaaaacaaa acaaggataa aagcattatg catcagccta ctcttagagt
      181 tttaaatatt ttagaactgc tggcaaaaga aaaacttacc ttaagtacta tagccaaaaa
      241 actaaatatt ccagctggaa ctctttggcc tattttgcaa actctacaag aaaaacaata
      301 catcagatgc gatttaaaga ataaaagcta ttatttagat tttaaaattt tagaattagg
      361 atacaatata aaaagtgaaa atagtatttt tgaaatgatt aaaaaacata tgaaaaatat
      421 aagaaattta acaaatcaaa cttgtcaaat gggaatttta aaagaagaaa atgtgctcta
      481 tttagaaaaa attgatgcaa ataatccagt acaattaaaa tctttcatag gcacctctta
      541 tcctgcttat gcaacttctt taggcaaggc tttattgtcc aataaaaata aagaagaatt
      601 aaaaaaaatt tatccaaaca attttgaaaa aatcacagaa aatacactaa aaaatataga
      661 tgaactctat caacaaatcg aacaaattaa aaaagaaaaa attgctattg aaagcggaga
      721 aatcaatccg caaattgaat gtatggctat aggtatagaa cataaaaaca aaataattgc
      781 cgctattagt atatcttatc ttattttcta ctctaatgaa accttcagag aaaaaaataa
      841 aaaaatactt ttagaagaaa aaaataaaat agaaaaagcc ttaaaaattc atttcaacga
      901 tttagaagaa ttatactaaa atagcccaaa aaagggctat aagttattct tgttctttaa
      961 gttttaaatt ttgctcacca taaagccctg ttccaacagg aatcattcta cctaaaataa
     1021 cattttcttt taagtcttct aagtagtcaa atttacccgc gatacttgct tcggtaagta
     1081 cttttgttgt ttcttggaat gaagctgcag aaatcacact atcactgcct atcgctgctc
     1141 ttgtaacacc taaaagtaca ggttcggcaa tagctggttc tccgcccaat ctaagaattc
     1201 gctcattttc ttcgcggaat ttgcgtcttg aaaccaaatc cccttcgata aatttagtat
     1261 gtccactatt aataatttta acctgtctta acatttgaga aactataacc tcaatatgct
     1321 tatcagaaat aacaacccct tgacctcggt atacttgttg aatttcagaa atcaagtaat
     1381 aatgcaaggc tttttcgcct aaaattttaa gcacatcgtg acttgaaact actccatcag
     1441 ttagcttttc acctgcgtga ataaattcac cttctcttac ttgaatatgt tttgatttat
     1501 cgatcaaata ttctgcgctt gtgccatctt ctgcttggat aatcaatctt tcttttgagc
     1561 gtaaaggctt atcaaaacga accacaccgt caatctctgc aattactgct gcattttttg
     1621 gttttcttgc ttcaaaaagc tctgaaaccc ttggaagacc tccggtaatg tcttttgatt
     1681 tcgctgctgc ttttggagtt tttgccaaaa tatctgcttg agaaatttta tcaccatcat
     1741 gaacaaaaat aaccgttttt ggctccaact gataacgcac tgctttatca cctttacctg
     1801 caattatcaa agtcggtctt actccgcttg gtaaatactc attgatcact agcgagcgct
     1861 tacctgttgc ctcatcgatt tgctcatctg cactataacc tgcttctata tcttcaaaac
     1921 ttaccacacc atcaatctct gcaatgatag tattattata agcatcccat tctgcaataa
     1981 ctgacttttc ttgttttggc gcactagcga ttatagaatc aaaattaacc tcttcgctat
     2041 cattaaattc tattcttgat tctcttggga tgtaatgtct ttttgcctct ctatcatttt
     2101 catcagcaac tacaacaaaa aatccttttt cttttactat atcgcctttt ttaatatttc
     2161 taaccctatc aagtccatcg cccttaagaa tatagaattt taaaattcct ttttcccctg
     2221 ctttgatatt ttgcacaaca ggatccccat cttttacaag aatttcactt gcaaatggaa
     2281 tacggtttgg cacattccaa ccctctttaa tcatctcaac aatactttca ttttcttcaa
     2341 cttcagcacc gctttgatac ggtaaataaa gctttccatc aatgcttccg ctaacgcccg
     2401 ctaattcatt tggtttagca agatcgtatt ttctaagaat atattttgct tcttgttttt
     2461 tatcttttat agaaacaatt acatcttcgt ggatattttc tatattgata atacccttaa
     2521 atggtgcttt aatttttggc tctacaagta aaatagccgc atttctacga ttagccacta
     2581 tgtcttttcc ctctttattt ttataagttt taagattata aaatcttata aaaccttctt
     2641 tttgggcgct tacctgtcta tcttgtaaat ctgtacttgc agttcccccg ctgtggaaag
     2701 ttctaagtgt aagctgagtt cctggttcac caatagactg agcagaaatg atacctactg
     2761 cctcacctgg tttaacaagc ttaccttcac ctaggttaat tccgtaacat tttgcacaaa
     2821 ttcctttttt agccttacaa gtgattggag tgcgaatatt tacgcttttc acaccacttt
     2881 ctcctaatat tctagctttt tcttcatcta ttaaggtacc ttctgtaaaa agtacagaat
     2941 ttgtaatagg atcgattaca tcttcagcta taaccctgcc taaaattctc tcttctaaag
     3001 tttctataat ggaactatct gcagtgatct cattgatttc aacaccttcg tgtgtgccac
     3061 aatcttcaac ggtaattttt acattttgcg ccacatcaat aagttttctt gtcaaataac
     3121 ctgcatttgc tgttttaaga gcagtatctg ctaaaccttt tctagctccg tgagttgaaa
     3181 taaaatactc aagaacattc aaaccttcac ggaaatttga aataataggc gtttcgataa
     3241 tcgatccatc aggcttggtc ataagtcctc tcatagcagc aagctgagaa atttgagctg
     3301 cactacctct agcacctgaa tctgccatca tatagataga attaaagcct tccttatctt
     3361 tttcaacaag cttcatcata tctcttgaaa gagtattgtt agtggttttc caaatatcaa
     3421 taattttgtt atatctttca cctgaagtga tcaaaccaag attataagaa ttttgaattt
     3481 ctcttacttg ctttttagcc tcgtcaatag ccttttgttt atcattagga acgataatat
     3541 cagcgataga tatagaaata cctgccttag tcgcatattc aaaacctaaa tttttaagtt
     3601 tatctaaaaa gcttgcagta gtttgtaaac caccttgttt atatacatga tccacaagtg
     3661 cagcaatatc tttctttttt aaaaccttat tccacatatt ctcagtaaca aaatcaggca
     3721 aaatagattt aataataagt cttcctgctg ttgtagtaat ctttctacca tcaaccatag
     3781 tttgaatgct agcatgaata tcaaggcatt tactttcaag ggccatcatt acttcatcaa
     3841 tgcctgtgca tatcttatgt gaaccttttg cacccatttt ttccaaagaa agataataaa
     3901 ttcctaaaac catatcttga gaaggtacag ttacagactt tccacttgca ggcaaaagaa
     3961 tattcataga agaaagcatt aaaaccttac attctgcgat cgcttcttga gaaagtggca
     4021 catgcaccgc catttggtca ccatcaaaat ccgcgttaaa tgctgcacaa actaaaggat
     4081 ggagttgtat tgccttcccc tcaactaaaa caggatggaa agcttggata gaaagtttat
     4141 gtagagttgg agcacggttt agcataacag gatgtccctt tactacctct tctaaacatt
     4201 cccaaacttc attggtttta ttttctatca tttttttagc ttgttttact gtggttgcat
     4261 aacctttttc ttcaagctta gctaaaagat gtggcttaaa aagctctaaa gccatttttt
     4321 taggtaaacc gcattgatcc attctaagtt ttggacctac aacaataaca ctacgacctg
     4381 agaaatccac ccttttacct agtagatttt gtctaaaacg tccttgtttc cctttgatga
     4441 tttcacttaa agatttcaat gggcgtttat ttgctccttt tacagcatta gcacgacgac
     4501 cgttgtcaaa aagcgcatca acagcctctt gaagcattct tttttcattt ctgataatga
     4561 tttcaggtgc atcaagttcc ataagttttt taagacgtgt atttctattg ataacacgac
     4621 gatataagtc attcacatca gaaactgcaa atttcccacc atctaaagcc actaaaggac
     4681 gcaaatctgg cggtaaaact ggaagatttg taatcatcat ccattcagga cgatttggta
     4741 cagcttcgtc gctatcggta ttggcgttta aatttgaatt taagaaattt tctacaactt
     4801 ttaagcgttt aatgatagtt tttttcttag cctctgaatt tgtagccccc atttcttctt
     4861 taagctgatt taaaagcgct acaagatcta aatttgcaag taaatcacga acaacttctc
     4921 cacccattct tgctttaaag ccgctatttt catagcgttg cattaaattt tgatattgct
     4981 cttcgttcaa aacatcgcaa tattccactt ttttagtact ttcattatca tagaaagcat
     5041 cacctgggtt ttcaacaata taagcttcat aataaagcac gcgctcaaga tctttcatct
     5101 taacacccaa aagcgttcct atacggcttg gaagagaatt aacataccaa atatgagcca
     5161 caggagttac aagctcgata tgccccattc tagaacgacg cacttttgaa tttgctactt
     5221 caacaccaca tttttcacac ttaacgcctt taaaacgcat ttttttgtat ttaccacaaa
     5281 gacactcata atctcttata ggtccaaaaa tctttgcaca aaaaagccca tctctttcag
     5341 gctttaaggt tctataatta atagtttctg gtttttttac ttctccataa gaccatgatt
     5401 tgattttttc aggacttgca agtcttagtt gaaatgcttc aaaatctcta ggtcttgcat
     5461 cttctttaat ttctattact ttaaatttac tcattatctt catccttatc aaaaatctca
     5521 acatctaaag caagagattt aagctcattg gttaatacaa aaaatgtttc aggaattcct
     5581 gttgctggaa cattttcacc ttttgtcaat gctttataag cactaaatct accttctaca
     5641 tcatctgatt ttatggttaa catttctctt aaagtgtgag ccgctccata agcttcaagt
     5701 gcccaaactt ccatttctcc aaatctttgt cccccaaaga gtgctttacc acccacaggt
     5761 tgttgggtaa ccaagctata aggtcctgta cttcttgcat gaactttttc atcaaccaag
     5821 tgatggagtt ttagcatata catacatcct acatgaacac gctctgcaat tttttccccc
     5881 gtgcgtccat cataaagttc tgttttgcca tccatatcta tcttagccat tttaaaaagc
     5941 ttgctaaatt cttctatatt tacaccttca aaaacaggag ttgcaaattt aacacccttg
     6001 ctccaatctc ttgcgtaatt taaaagctct tcatcgctta agcttttaat aaattctttt
     6061 tcgtttgcaa gtcttggaat agaacaaatt tcaagcattt tcgctcttaa ttctttaacg
     6121 aaatcttttt gttttctgtc aaaaatttct tgaatttgat cacccagtct aagccctaca
     6181 agacctaagt ggctttctaa aatttgccct atattcatac ggcttggaac gccaagtgga
     6241 ttaagcgcaa tatccacact cttaccattt ggcaaataag gcatatctac ttcaggaact
     6301 atagttgaaa ctataccttt atttccatga cgtcctgcca ttttatcacc gactttaagc
     6361 tttctttttg tagcaatata aactttaaca agcttaatta ccccacttgg taaaatatca
     6421 tctttttcta aaatttcaag cttttcatcg tgttctgctt ttaatttttt cttctcattt
     6481 tggaaatgat tttttaaatc atcgtattct ttttgaatct ctttagaata agctttaatc
     6541 aaagttgtta aagtaaaacg attgattttt tcaagttcgc taatatctgc agtttgtcct
     6601 tttttataat ttttatctcc aattttttga tcgctattta aagaggcttt ggaaagaaga
     6661 gcacaaacac gaagcatttc ttctctatcc atcatcaaaa gtctatcatg atgctctttt
     6721 tctaaagcca ttttttcttt atcataagat tttattgcgc gatcatcttt ttcatagcct
     6781 tttttagtga aaattttaac atccacaaca acaccctcta aagaagcggt tgcataaagg
     6841 gatttattca caacatgtcc tgctttttct ccaaaaatcg ctcttaaaag tctttcttca
     6901 ggagttggtt taacctcacc ttttggagaa accttaccca ccaaaatcat acctggtttg
     6961 atatgggtac caatttttgc aataccgctc tcatcaagat gcgcaacatc ttcttctttt
     7021 acatttggaa tatctttggt aatttcttct ataccgtctt ttagttctct tgcttcaatt
     7081 tctttttcat aaatgtgcac gcttgtaaaa gtatcttcac gaataattct ctcacttaca
     7141 actatagcat cctcatagtt ataaccattc caaggcataa aagcgattaa agcattttta
     7201 cctatagcaa gttcgccttg atccatagaa ggaccatctg cgataatttg tcctgctttt
     7261 actatatcac cttttttaac aatagggtgt tgaatataat ttgtattttg attggttctt
     7321 aaatttttct ccatagtgta atggtcaata aatggacctt tatcatcttc acctaaaatg
     7381 aaaatgcttt tattatccac tttctcaacc acaccgccac gctttgcttt aacagcttcc
     7441 caagcatcac gcgcaataat ttgttccata cctgttccta ctatcggagc tgaagcagta
     7501 agaagtggca cagcttgacg ttgcatgttt gaacccatta gcgctctgtt tgcatcatcg
     7561 tgctctaaaa acggaatcaa agaagctgca actccaacaa ccatacctga gcaaagatcg
     7621 attaattgca cttcttcgcg tcttgcaagt atagtttcac catcttgcct agcctcaaca
     7681 aattcttcta ctatattgcc tttagcatca accttagttg aagctggtgc gataaacaag
     7741 ccttcttctt gtgtcgctgt aagataaaca acttcattag tcactttacc atttacaact
     7801 tttctatatg gcgcttcaac aaagccaagt tcatttactt ttgcataagt agaaagagtg
     7861 ttaatcaaac caatattttg accttcaggt gtttcaactg gacaaattct accataatgt
     7921 gtcgcgtgaa catcacgcac ttcaaaacct gctctttctt ttacaagtcc accttcacca
     7981 agcgctgaca aacgacgctt atgagtaacc tcgcttaaag ggttggtttg atccataaat
     8041 tgcgaaagct gacctcctgt aaaaaattca atgatagttg tagtaatcat tttaggattg
     8101 attaaatcat aaggcattac tttatcaaga tccgcattta aagaagtaaa tttatctctg
     8161 atcgcctttt gcatttttgc aagacctaaa tgaagttcat tagctaaaag ttcacctata
     8221 gaacggatac gacgatttcc taaatgatct ctatcatcaa tatgtccttt accatttttt
     8281 actttaatta aatattttgc agttttaata atatcttcat tagtcaaaac agtaacatac
     8341 tcaggcactt caagacctaa cttatggttc attttcatac gacctacttt agtaagatca
     8401 tatctttcag gattaaaaaa taaatcatta acaaaggctt tagccgcatc ttttacaaca
     8461 ggctcacctg ggcgcattac tttataaatt ctaatagctg ctaaatcatt ttcatcatcg
     8521 atattttcac tttgttttaa taattttaaa gtttcattat cttgtgcaaa tgaattaata
     8581 atagctgcat ccactccatt tgccaagtca ttagctattt caaaactttt ttgctcttta
     8641 attttagcaa gtttgctttc atcaagtaag gttagagagt caaataaaac ttcgccactt
     8701 tctttatcaa taataggatt ggctagataa cgatttaaca aaatttctac tggatattct
     8761 atccatttta agccatcttt aataagctgt tcggcttttt tcttggttaa tcttttaccg
     8821 gcttgatgga taatattacc cttttcatcc ttgatatcgt attctattct atccataaaa
     8881 tcacttggat taaattctgt taaaaattta tcttttttaa cgtgaatagt ctgaatagga
     8941 taaaataatt taataatatc ttgtttttta tatcctaaag ctctaaaaag cattgttact
     9001 ggaacttttc ttcttttatt aatccttaca tacaatacat ccttagcatc atattcaaaa
     9061 taaagccaag aaccgcgatc aggaataatt tgagcagtgt atacaagctt attaacaaca
     9121 gtcgagcttt cttcttcttt gaagattacg cctggacttc tatgaagctg attaactaca
     9181 actctttcaa ccccattgat aataaaagaa accctatctg tcatcaatgg aatttctctt
     9241 atataaattt cttgctcctt gatatctttt ataccaactt tttcacctgt tttctcatct
     9301 ttctcatgta aggtaagacg gattttcatt tttaaattta cagagtaagt caaacctctt
     9361 tccatgcact cacgaattgt gtattttggt tttccaattt cgctactaac atactcaaga
     9421 cttaacctat tttgtggatc atggatagga aagattgatt taaatacttt ttctattcca
     9481 ctttcaccat tttcaagatt taaaaaataa tcaaaacttg ctttttgaag ttgaagaaga
     9541 tttggaattt ctatttgctt tgaaatattg gagaaatcta ctcttaaacg atttcttaat
     9601 ttattgtcta acatattgca tatacctcgt ggtaaatttt gtaaatttaa aaaagaagac
     9661 ctaatatcta ggtaaaaaat aaaaaagaag acttacttaa ataagcaaat cttcttaaac
     9721 ttttaaagct taattactta agttctactt tagcaccagc ttcttcaagt tgttttttag
     9781 cttcttctgc atcagcttta gccacgcctt cttttaaggt tgaaggtgtt tgctctactg
     9841 catcttttgc ttctttaagt ccaagaccag ttaaagcacg aacgatttta attacttcga
     9901 tctttttagc accaccatca actaaaacga tatcaaattc agttttttct tcagctgcag
     9961 ctgctgcacc acctgctgct gcaccacctg ctaccattac aggagcagca gatacaccaa
    10021 atttttcttc aaattctttt acaagctcag aaagctcaag aacacttaaa tttgaaataa
    10081 attctaatac atcttcttta gaaattgcca ttttttatcc tttatttatt attcagattc
    10141 ttttttattt ttaagcgcat ttaaaccaat agtgaaattg gtaattggcg cattccaaac
    10201 ttgcaaaagc atagcaagca actcgttgcg agaaggcatt tttgccaaag ctctaacctt
    10261 agcaacatct gcaacttcgc cttcaatatg agcagtttta atttcaaatt tatcattatt
    10321 ttcttcaaat ttagctgcta cttttgaaac gctaagttga tcctcgcccc aaagataaac
    10381 attagtatct ttaagaacca gacctgtttt accggaatta ttaagagcaa tgttagccaa
    10441 agtgttttta ataatttgaa cttttacatt gttttctctc gcattatttc taagttcttc
    10501 aagcttttta gtactcaagc ctttgtaatt acaaactaca attgcttcgc taattttaaa
    10561 ttcttcttga agcttagcaa taatctcaac tttttcgctt ctagtcacat tttctccttt
    10621 ccgactgaga tttcaagcag agtggtttta cccaaattaa gctttcgcct cgactatctt
    10681 caatctaaaa taaacatctc aaaaaataaa aattttttca gatgtttatt taaaaagagt
    10741 tgcattatag caactcttac ttcatatcaa gtaattcttg cgtttcaagt tttacagaag
    10801 gactcattgt taaagacaaa gctgcgcttt taatatatct acctttagct gctgcaggtt
    10861 tatgtttatt aatcgcttta ataaaagtag aaatattatc ccaaagttgc tctttagaaa
    10921 aacttacttt tccaaggcct gcatgaatat ttccttgttt gtctacacgg aaatttactt
    10981 gtccgctttt agcattatta actgcttgag ctacatccat agtaactgtt ccggtttttg
    11041 gatttggcat taaaccttta ggtcctaaga ttctacctac tttacccaca agacccatta
    11101 aattaggagt tgcgattaat acatcaaaat tcatattgcc tttttgaatt tcttctatca
    11161 agtcatcact tcctacaata tctgctccag cattttttgc ttcatctgcc ttagcatctt
    11221 ttgcaataac agctacacga acttttttac ctgttccagc aggaagtaca acagaacctc
    11281 taaccatttg atctgcatgt cttggatcaa cattcaattt aagtgcgatt tcaacagttt
    11341 catcaaattt tgcagatttt aaatttctta ctgtttcaat tgcttcattt aaagcatact
    11401 ctttgcttac atcaattttt tgtgataatt cttttaatct tttagttatt ttagccatat
    11461 atttttctcc gcatttttaa agtgctaccg ctttttacct tagcggtaaa aggttttaat
    11521 ctacgatttc aacacccata gagcgagctg aacctgcaat aattttcgca gcttgatctc
    11581 tatccttagt atttaaatct gcaatttttt tatcaacaat ttctaaaact tgggcacgag
    11641 ttaatttacc taccttgttc ttaagtggat tatctgtacc tttagaaatt ccagctgctt
    11701 ttttaattaa atctgtagca ggtggctgtt ttgtaataaa agtaaagctt ttatcagcat
    11761 aaacagtaat aacaacagga atattaaatc ctgccatatc ctttgttctt tcattaaaag
    11821 ctttacaaaa ttccatgata tttacacctt gctgacccaa agcaggacct acaggtggtg
    11881 atggattagc ttttgtagct gcaatttgca atttaatttc gcctacgact tttttagcca
    11941 taacaaatct ccttacttga tataaattaa attattttct caacttgaga atacaagatc
    12001 tctactggag tagaacgtcc aaaaatagaa acattaagtt ttaataatcc acgaaccata
    12061 tcgtattctt ctactatagc agtaaagttt gcaaatggac cttcagtaat tcttacattt
    12121 tctccttctt caaaagagat tttaggtttt ggagcagcac gattatgcac tttttccaaa
    12181 attaaattaa tatctttttc tgttaaagga gtaggttttt ttgattctcc aataaaacga
    12241 ccaacttttg gaagagattg aatgcgatgc caaagttctg tatttaaatc tagatgtgca
    12301 aaaacatacc cagaatacaa acttctttca cttatcttct cttttccatt tttaaattca
    12361 ataacatctt cagtcggaac aactatttct tttagttgct cttcgattcc attatctttt
    12421 actaaatttt caatggctct tttaactgcc atttcgctac cagcataagt ttggattgca
    12481 taccatttat gagtactcaa attttgttct cctttataca atcgcagaaa caatagagga
    12541 cataatccaa tccactaacg ccaaaaacaa agaaataacc gcaaccacta caaaaactgt
    12601 aatataagca tttcttacct gttcttttaa aggaaaaatt actttcctta attcgacttt
    12661 tgataattta aaataagtta ttaatttttc catttattta aaccttaatt atggcagggc
    12721 aagagggatt cgaaccccca accatcggat ttggaatccg gtgctctacc gttggagcta
    12781 ttgccctagg gcataagctt aactttttag cttaacttct ttgtgaagtg tgtgtttttt
    12841 taatcttggg caatattttt ttaattccaa tttttctgta gtatttttgc catttttata
    12901 ggtgctataa ttaatatcac cacattcttc acattttaaa ccaactttaa ttctcattta
    12961 tattttcctt aaaaaattta aagccaagta ttaaacttgg cttttaaaat tacttaataa
    13021 ttttagaaac aacacctgaa ccaacagttt taccaccttc acggatagca aaacgagtac
    13081 cttcttcaag cgctactggt gcaatcaagc ttacagtaat tcttacattt tcaccaggca
    13141 taaccatttc aacgccatca gctaatttaa tagaacctgt tacatctgtt gttcttacat
    13201 agaattgcgg tctatagtta ttaaagaatg gagtatgtct accaccctca tctttattta
    13261 ggatataaac ttcagcttcg aaatcagtat gtggagtaat tgattttggt ttagcaagaa
    13321 ccataccgcg gataacttct tctttttttg taccacgaag aagaacacca acattatccc
    13381 ctgcttcacc ttgatccatt tcttttctaa acatttcaac gccagttaca gttgttgttt
    13441 gagtatcttt aataccaacg atttctatag tatcaccaac ttttacaata cctttttcaa
    13501 ttctacctgt aacaacagta ccacgacctg aaattgagaa aacatcttca attggcatta
    13561 agaaatcttt ttcagtgtca cgagttggag ttggaatata gctatcaaca gcagccataa
    13621 gatccataat tttcgctgac cattcgccat cttgtccagc ttttgcttct tcaagagctt
    13681 ttaaagcaga acctgaaata ataggtgtgt catcacctgg gaaatcataa gagcttaata
    13741 attctctaat ttccatttca accaattcta aaagttcagc atcatcaacc atatctgctt
    13801 tattcataaa tacaacgata tatggaacac ctacttggcg cgatagaagg atgtgctctc
    13861 tagtttgtgg cataggacca tcagctgcag aaacaacaag gatagcaccg tccatttgag
    13921 cagcaccagt gatcatgttt ttaacatagt cagcgtgacc tggacaatca acgtgtgcat
    13981 agtggcgatt atctgtttca tattcaatat gagaagttgc aatagtgata cctctttctt
    14041 tttcttcagg agcgttatca atattatcat aatctttaag ttctgccaaa cctcttcttg
    14101 aaagaacagc agaaatagca gctgtcaaag tagttttacc gtggtcaacg tgaccaatag
    14161 taccaatgtt tacatgtggc ttattacgtg aaaatttttc tttagccatt ttttcctcca
    14221 tataaaaatt taacaaggca agtctatatt tataattttt tcaattttat ggagctcata
    14281 gcgggaattg aacccgcgac ctctccctta ccaagggagt gctctacctc tgagccatac
    14341 gagcgctcag aaaaattata taaaaacata gacaactaaa aaacaatttt aggggattta
    14401 ctgtaagtta gaaaaaaaat acagctccca gtcaaacttt ggagcgggaa acgggactcg
    14461 aacccgcgac cctcagcttg gaaggctgat gctctagcca actgagctac tcccgcaaag
    14521 catggtggtg agtcgtggat tcgaaccacg gaaggcgaaa gccagcagat ttacagtctg
    14581 ccctcgttgg ccacttgagt aactcaccat aaatgaaata ttacatctaa gcttattgta
    14641 atattctggt caaacactgc taaaataatg gagctggtta agggacttga acccccgacc
    14701 tgctgcttac aaggcagctg ctctaccaac tgagctaaac cagcaaataa tttaaagatg
    14761 ttattatatc tgaaaaaaaa tagtttgtca agattatgcg ctataaatta tttaaaaaac
    14821 aatttcataa ttaaaaattt cccattaaaa atacaaaaac taagattttt tattgaaatc
    14881 atttatgata gtcaaataaa ttaaggaatt tcttagctct ttcgctttta ggattttcaa
    14941 aaaaaccatc aggagtattt tcttcgataa tttctccatt atccataaaa attattctat
    15001 cggctaccgc tcttgcaaat cccatctcgt gagtgactat aagcatagtc attccatctt
    15061 ttgccaaatt taaaattacc tctaaaactt cacgaacgat ttcaggatca agtgctgctg
    15121 taacctcatc aaaaagcata agctctggat tcatgcaaag actgcgcact atagctattc
    15181 tttgtttttg ccctccgctt aactcttttg gataagcatc gattttatgt gctaaaccta
    15241 ctttttcaag ccaaatttta gcttcttgca aaacttcttc tttagctctt ttttgtactt
    15301 ttaaaggacc taaaagtatg ttatctttca cgcttaaatg ttcaaatagc tcgtatgatt
    15361 gaaataccat acccactttt tgacgcactc ttgtccaatc tttaaaattt ttatcgatct
    15421 tatcttgtcc tatttctata accccatctg caatttcctc aagcccatta atacaacgca
    15481 aaagagtaga ttttccgcaa ccacttggac ctaaaatcac caccacttct ttttgtttta
    15541 cttctaagtt gatattcttt aaagcatgat gaaagccata atatttttgc aaatttttta
    15601 tctttaaaat actcatttta actccatttt ttttctaatt ttttagaata taaagtaaca
    15661 ggatagcaaa ttaaaaaaaa gataaaaaag attagaccat aaataataaa tggtgctaaa
    15721 tcatttttat tgttaaattc gatgatttgc tgccccactt ttacaagctc taccgcaccg
    15781 attaaataag caaaagttgt acttttaatc atgcgtgtta ataaattcat actcataggt
    15841 gttaaacgac gcatagcttg aggaatgata atataaaaat aactttgagc tttatttaaa
    15901 ccaagacttg ctgcactttc gtattggtgt ttaggaatgc tttttaaaga agttcttacc
    15961 aaatccatca tttcaaaact tccccaaata ctaaaaacaa taatagccga acttacactg
    16021 cttaaattta tacccaacca tctagaaagt ccaaaatata ccataaaaag ccatactagt
    16081 agcggcataa cacgaacaaa ttctaaagca aaacgacata aaatataaat ataacgattt
    16141 ttcagactca tcaaaatacc taaaaaaagc ccgccaaaag aagttataat aatacttaca
    16201 atagaaattt caagtgtgat atacaagcct ttccaaagtc gacttaaagt atctggattt
    16261 aatagatcaa acatttgaaa accttttttc caaaaagaac aaaaacaaag aaataggcag
    16321 tatgatacat aaatatccca aaaacaaaag caataaaagc tcatccgttt tataagtaag
    16381 tgaatttaaa cccttcataa ctgtgactaa atccggcaaa gctataatgc tcacaacaga
    16441 ggtttcttta ataagaaaaa caatatttgc gcttattcct ggtaagcaaa cccctaaagc
    16501 ttgaggcatt ataacataac gcaaattatt caatttagta aaacccaaag aaagacctgc
    16561 ttcaaattgc tgctttttaa tggcttcaaa accagctcta aaactctctg ccatataaga
    16621 accgcccaaa aaactaagcc ccacaatagc acaagcaaac gctggacgca aagcctcatc
    16681 tacacttaaa caaatcaaat tcaaaggcgg aatttgttct aaatgaatat caaatttagg
    16741 caaagcataa tacaagaaaa aaagctgtat caataaagga gtattgcgag aaaattctat
    16801 ataaacttta caaaaagctt ccataatcgt tattttaaaa taactcatta aaatacaaaa
    16861 aaagcctata attatagaaa aaataatacc aaaaaaacta agttttaaag taagccaagc
    16921 agctgcaata aaagcatttg aattagctag tataaaatca aaatccattt tattcctatt
    16981 accaaagtcc tttttttaaa ccctctttat ctaggatctc aattttaccc ttttttgtct
    17041 caattagctc tgaattttta aattctttta gaattcttga caaagattca gcacgaacac
    17101 ttaaatccac tgcaatttgt ctttgcgaaa tttgagccaa attcttttca ttttccaaaa
    17161 gatatcttgc aagtttactt tttaaatcca aagaattttc taataatttt ttttctaaaa
    17221 ttttaatttt ttcaaaaaga gatgaaataa gcaagaaatt aaattcttta ttttggctgc
    17281 acagggtttc aaaatcttca aaatcaattt ctaaaatttc acaatattct tcacaaatag
    17341 catttgctgg atatctcaaa cgcttaaatg taggcatttc ggctataaaa ttaggcgggg
    17401 taaaataatg caaagtaatc tctttttcgc ctgctgtgct tttgtataca cgcactctac
    17461 cttttaaaag aataaaaaat tttaatgcct tttcgccttc aaaaaataaa atattatttt
    17521 tttcaaattt tcttatttta cctataccct ttaaaaaatc taaatactct tgcattataa
    17581 tatttaacct atgttaattt tatctcattt tgtttgtgct atattaacga taaattttta
    17641 tccaaaggca aacacaatga aatatgaaac tataaatcaa gaaagtatag ctaaacttat
    17701 ggaacttttt tatgacaaaa taagaaaaga taaggattta gggcctattt ttaacaatgc
    17761 cataggaact agcgatgaag cttggaaaga gcacaaagca aaaataggga atttttgggc
    17821 aggaatgttg ctaggggaag gtgattatat cggacaacct ctaaaaaaac atcttgattt
    17881 gcctcctttt ccgcaagaat tttttggaat ttggttagga ctttttgaag aaagtttaga
    17941 taaaatttac aataatgaag aaatgaaaaa tgttatttta cagcgcgcac aaatgatagc
    18001 ctcgcatttt caaaatatgc tttatcgttt tggtggacat taagattata tttccatcaa
    18061 atcttttttt gctttttcca aaatgtattc atctttggaa aaatcaaaat atttaaattc
    18121 atttccatgc tggataaatc catcgagcaa atctccactc aaacgatttt taagatcaag
    18181 ttctgcgatt ttaaaaccat ctaaagtact agcaaattct tttaaacgac ttggaatttc
    18241 tttgagtttt gtataaagat aacaagtgct tttaagtccg acacggccca cgcgtccgcg
    18301 aagttgatgc aaggtagcaa ggcctaagcg ctccgctcct acaataacaa tagtactaag
    18361 ccttggcaat gaaattccta cttctacgac tgtggtgctt aataaaatat ttccctcatc
    18421 acgaaaccgc tccaaaattt catccttttg cttgtctttt ccatgcgtaa caaaaacttt
    18481 ttcataatta tcctcccaat acctccttgc ttgttctaaa gaaagataag gaattttatc
    18541 gcttggattg actaagggat agatgatgat gatttgatga ttttgtgcga tttcttcttt
    18601 gattttttca ctaagctttg caaaaccttc attttgtata caaagagtgg tgatatcctt
    18661 tttaaaaggc atttccttga taaaactaaa atttaaaagt tctgattgta tcatgcttaa
    18721 agttcttgga atgggagttg cagaaaattg tataaaatgt ggggctaatt cattttcatt
    18781 taaagaataa atttgctgac gctgtgcaga gccaaagcga tgctgctcat ctatcattac
    18841 aagcacagca ttatgacttt gaaggtgaat gagcgcatgg gttcctataa tcaaattggc
    18901 ttttttaatt ttttcttcca aatctttttc ttttttaccc cctttaataa ataaaatatc
    18961 cacaaattca ggcaaaagct tttttgcctc ttcatagagt tgattggcaa gtatgctagt
    19021 aggagccatt aagatagctt gttttggata caccatcaaa gcagcgccca acaaaaccaa
    19081 agtcttgcca cagcctacat cccccataat cacccgtctt ttagcttctt tagagcccaa
    19141 atcttgctct atatccttta aagcatttaa ttgatcacga gtaggtgaaa agggtaaatt
    19201 ttttagccaa ttggctatat tgaaaatttc aatttcataa gctttaaagt gacttttttt
    19261 agccttcaag cgttttaaaa aattgtaaat ttcaatatat tttaaatctt tctcaaagcg
    19321 ctccaaattc tcaaacatca aaaaactttt ttcatcataa gtgtgtaaat ttaaaagaaa
    19381 atggatatat ttatcctcaa tcccactttc ttttaaattt tcataattaa gatatttgtg
    19441 tataaattca gaaatttttt tatcttgtaa accttgaatt tgatattttg gagcaaaacc
    19501 tgcaaaagaa gttaaaattt taggattgtt aaattgccaa acatggccaa aacgcgtaag
    19561 tttcccattt aaaataagtt ctttgcctat tttgcaaatt ccaaagtgcc aagccctagg
    19621 atgaaaaaac acaaaggaaa tgtcttgact ccactcttta caaaatccca aaccaaagag
    19681 ctgacctttt tttgaatgaa tgcttttaat gattattttt tgagtgcata gctcattttc
    19741 tttaggtgtt ttgcttggac ttaaattttc gattttttta ggtaagataa gcgctaaatc
    19801 aatcgcgctt ttaattttta attttttaaa aaaatcaaaa tcattttctt taattttcat
    19861 ttgcaatact tgcaaaattt aaatctaaaa tttcattatg tttttgaata taagcattta
    19921 gctcttgaag ctctactttt tctataagct ttaattcttc tttataatat ccttttggca
    19981 atccctgata gtactcatta aaacttatcg acaaacgcct actaagactt tcataacgca
    20041 aaggagttga acctatgaga aaatttttag cctgcacaag ctcattttga ctcactcctt
    20101 cttttacaaa atctctaaat acttctttaa ctatcttttt agcttcttta gcactttcat
    20161 ttttagtttg caaataacca aaaactctag taaaagatgc attcatatca agcatagcat
    20221 aagcagaata cgcaagccct cttttaacac gaatttcttc cattatcctt gatccaaaac
    20281 cgccttgacc taaaataaat agtgcgattt ttgcaagata aaaatcctta tcattaaatt
    20341 ttgtaaaaaa gggtgcagca aagtaaatat aggcttgttc gctttctttt ctgatttgga
    20401 ttatgtcttt attttttgag ttaatttcat aagttttttg tgaattttga ctgccttttt
    20461 gaagttttgc taataattta tttaataagc ctttagcctt ttcttgggct aaattcccgc
    20521 ctaaaatcac tacaagatta cttaaattaa tatttttctt ataaaaactc tccaagtcgc
    20581 ttaaagaaat ttgcttgata cttttttcat cgccatcatt tggactttga aattctttac
    20641 attcaaaaat ttcgctatta agcaaatttt ttgctaaata atcaaaatca ctatttttac
    20701 tagcaagctc acctagggca ttgattttta atttttctaa aattttttct tcaaatctag
    20761 gatttaagag taagttttct aagtgtttta aagcaaattc aaaattttct ttcaagcaag
    20821 aaagattgat ttctaaactt tcaaaaccac tacttgcttc caaatttaca gctttaaatt
    20881 ccaattcttt aaaaaagcta tcatctacac cctcatttaa aattcttgca aacatctttg
    20941 caagtcctgc tatttcatca taacttcttc cacaatttct aaaaacaagc tttaagataa
    21001 caataggaaa atcgttattt tcttcaaaaa taaaaggaat ttttactcta ctaacttcta
    21061 aattctgcat taaaaccttt ctaaaatttc ataagctgta ttacgcttag cgggattttc
    21121 acctaagctt ttaatcagtc ttatcatctc atcttgattc attctataac tcgcacctgc
    21181 agcgcttaca acattttctt ccatcatggt tgagcctaaa tcattggccc caaattttaa
    21241 agcaagttgc ccaatcaatg aaccttgtgt tacccaagaa ctttgtaaat ttttaaaatt
    21301 atccaaataa agtctagcca aagctaaaag tcttaaatat ttgtttgaac tttgcttcat
    21361 gatttcagga tgtttttgga ttaatgctgt attttcactt tgaaaactcc ataaaataaa
    21421 agctctaaat cctcctgttt catcttgtaa ttttcttaaa tgctcgaagt gatctataat
    21481 ctcctcatca ctttcaaccg ttccaaacat catagtagca gtgcttttca taccgatttc
    21541 atgcgctctt ctatgtactt ctagccaagt agcagtatcg catttattag gcgcgataat
    21601 atctcgcact ctatcgctta atacctcagc acccgctcca ggtattgaaa acaaaccttt
    21661 agcttgaagt ctttgtaaaa cttcagaaat tgaaatttta gaagccttgg caatataagc
    21721 aatctcaact gcagaaaaac catgcacggt aatatttgga taatgctcct taatccacga
    21781 aacaagctct tcataccatt ctatttttaa tttaggatgc accccgcctt gaaaaagaat
    21841 ttgcgtccct ccaatagctt caagctcttc gattttttta ccaatttctt caaaactcaa
    21901 aatataagcg tcatcttctt tatgatggcg ataaaaagca caaaaagaac aatctatgca
    21961 acaaacattg gtgtagttta tatttctatc tacaacaaag gtggtgattt tttcgggatg
    22021 aagttctaat tttctttgat aagctatttc tccaagttct gctaaatttg cattccttaa
    22081 caaataaaga gcttcttctt tatctaatct tttcaagtta tttccttaaa tccattttta
    22141 gctttattat agcatttaaa aacataaatt atgctatagt ttcgcttatg aattatattg
    22201 acttattgaa aaataataaa aatattagaa tactaacctt agtacaattt atcgtgtatt
    22261 ttggcgcttg gttttcccaa acaggtgttt ttactctttt agtaagcctt aacgctccta
    22321 cttgggcaac ggctacaagc gctatgcttg cttttttacc aggagttttg cttgctccta
    22381 ttaatggagt tatagtagaa aaaaacaaac ccaaaaagct tttgttaagc atgattagca
    22441 tagaacttgt ttctattttc tgccttatct ttgtaaccag tcttagcatg ctttggcttt
    22501 tatttatttt aatttttgtt agactttgcg tggcttcgat ttattttcaa gctgaaatga
    22561 gcttgctagc taaaatttta aatccaaaag aactcaagct tgctaatgag atgcatagtg
    22621 taatttgggc ggtttcttat acagcaagta tggcaagtgc gggaattttt atcaatttct
    22681 ttggcattaa agcggccttt ttgtttgatt gttgtctgat aattattgga attttatttt
    22741 taaccaaact tcatattcct cattttaaac aaaaaattca aaataaattt tttattctga
    22801 ttaaagaagg ttttttatat gttttacaaa ataaaattat ccttcatctt attatattgc
    22861 acgcttttat aggacttacc gcttatgaaa cactcgtaac tttattagcc caacacgaat
    22921 acaaagaagt tttatccgct gctttggtta tagggttttt aaatgcaata agggctttag
    22981 ctttagcttt tggtcctatt tttctaagta aaatcacaaa caataaaaat gtattttttc
    23041 tatacttagg tcaaggttta ggaattatac tttgggcttt aacccagttt aatttttata
    23101 tttcatttat aggccttatt gctgcgggat tttgtacctc atccctttgg gcttatactt
    23161 atactatgat tcagaaaaat tgtgataaaa cttactatgg cagagtgatt gcttatacag
    23221 atatggttta tcttagcttt agcgctctta tttctcaact catgggctta ttgtttgaac
    23281 aaggttttaa gcttgctata atcacggctt tacttggagt ggtatttata tttgcggctt
    23341 tttattggag atggtttgat aagaaatatt tgtgaatttt acaaattcac aaattaaaag
    23401 attaaatttt aaataaatct tgcaagtttt tcaaggcttc ttcattactt aaagtattgc
    23461 ttgtggtgcg agcattcact tcattaagtt cgatttcata tccactaagc atacccgcaa
    23521 gacgaatatt aataccgctt tttccaatgg ccttactctt ttgctcgctg tttaaagtta
    23581 caattgcttt ttcattttca atttttacag aactcactat agcaggtgct aaagctcttg
    23641 cgattaaaat ttcaggttca ttgctaaatt caatacaatc tatattttca ttatgtaatt
    23701 ctttactcac agcgttgatt ctaacccctt ttacacctac agtagctccc acaggatcaa
    23761 tatttgcccc atttgcttga agtataattt tcgctctttc tccaggaatt ctagcgcatt
    23821 taactacgct tacatatcca tctttaattt caggcacctc tgcttcaagt aaacattcta
    23881 aaaatttagg gcttgtgcga cttagctcca ttttaatacc cttatccgta taaacacggc
    23941 gtatcacagc tttaacaaca tcgcccactt taaatttttc acccttgatg cgattttttc
    24001 taggtaaaaa agctcttagc tcatcgattt ctatataggt attttcctca ttatcaattc
    24061 gcacaacatt tccaaaaacc atttgaccga ctttattttt atatttttca aaaatggttt
    24121 gctcaagtag tttttgtata tggtattcta attctttatg taaaatattt acagctgttc
    24181 ttcctaaatt ttctaaagaa cattcatagg taagctcatc accaatttca acatcaggtg
    24241 cttctttttt agccttgcta aattcaatat aactttcttt attttcattc aatctttcgt
    24301 cattatcagc cacaactgta attttttgat aaagatttaa attttttcta tctacaaaaa
    24361 agtcatattc ttgcccataa attctttttg ctgtatttat caaagctata ataacttttt
    24421 ctttcacgct ttctatatct aaatttttct cattcgcaat gctttctata atgtctgcga
    24481 ttctttccat aattatcgat accttttctt ttgggatttt tttaa
//
LOCUS       DBBXRO010000011        21928 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.011, whole genome shotgun sequence.
ACCESSION   DBBXRO010000011 DBBXRO010000000
VERSION     DBBXRO010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21928
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.011"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..284)
                     /locus_tag="ACJFEZ_000324"
     CDS             complement(<1..284)
                     /locus_tag="ACJFEZ_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mor transcription activator family protein"
                     /protein_id="HGG0916467.1"
                     /translation="MLSNNEYFEYFIDFVKNNDKREILKEFGGANIYIPSYKTLLRDE
                     ELKEDFKTLIKQGLTTKNASLECAKKYDLSLNAVYLITKELRENLEPSLF"
     gene            complement(410..685)
                     /locus_tag="ACJFEZ_000325"
     CDS             complement(410..685)
                     /locus_tag="ACJFEZ_000325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916468.1"
                     /translation="MILEIHSYDAEFFLTLGIEKHSQIAFAAKRTSLEIMHNGITHQI
                     KTDEDFGILLNVICVIRERIDESFEEEDKSLVIDIDELIEKTCEELE"
     gene            complement(732..1181)
                     /locus_tag="ACJFEZ_000326"
     CDS             complement(732..1181)
                     /locus_tag="ACJFEZ_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HGG0916469.1"
                     /translation="MNTQNTLKKHLIKIIHTLRKDANLSDDESYRWVLNQRYGKASSK
                     DLSIDELRDFAITLGYDEKFLKKQNTKKARYFKKENTKSGRATKKQLNMIQAIWSKNA
                     KNPTQWALREFINNIIKKRPLHLWYLSIEDANKVILGLKNLENNSTH"
     gene            complement(1178..1870)
                     /locus_tag="ACJFEZ_000327"
     CDS             complement(1178..1870)
                     /locus_tag="ACJFEZ_000327"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916470.1"
                     /translation="MDNAKEALKELFGISEVQAVAIERLYFKAKTPKDILGFKKYYDL
                     TMLKKQFIGTSYEKLSLVCAFAELDLNLRYKNIESFLEWLFISFSNRFIFQTKKGDFS
                     YSFVLKYYDGSIVYDELGKPVLKHVDCGDNLYFINANKELCDEQRKPLNAGEFYNKLV
                     EYMFKNQEKIIFDNKIEISPVIKTQIANQATINKDYEQNYLEYKKNQNKLYNANIDKF
                     TSKLEQILKAKK"
     gene            complement(1870..2139)
                     /locus_tag="ACJFEZ_000328"
     CDS             complement(1870..2139)
                     /locus_tag="ACJFEZ_000328"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916471.1"
                     /translation="MKFNPPSKEDLIKAIDEFNAKNSCSIPYFIADSFINYYKQDDGR
                     WLMANKKPLKCWKRALNSTWLPKLANKYKNKDKQKALASWLEEEF"
     gene            complement(2136..3098)
                     /locus_tag="ACJFEZ_000329"
     CDS             complement(2136..3098)
                     /locus_tag="ACJFEZ_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916472.1"
                     /translation="MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGK
                     SYLSAAISKTLCKDARVKSIVYVDMDNPLNVLNERGFGELILNESKFTYIHRSSLKTS
                     AYELLEMIEGKGVAGSYEGVLFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIMA
                     LHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFIN
                     IKTLNIKNTDLQNAKISDKEEAFIEKVLKLLKEKNLSTSEILLALDVSRSDNFSRNTL
                     EKFKGIFWESELGGENGRTFVWKSLKADNKDSNDKELSLFGDEL"
     gene            complement(3207..3584)
                     /locus_tag="ACJFEZ_000330"
     CDS             complement(3207..3584)
                     /locus_tag="ACJFEZ_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YopX family protein"
                     /protein_id="HGG0916473.1"
                     /translation="MKLQDFDFRIWNTACKKYIDDVGLISNIMCDLIHSATDIIEDFE
                     IELWTGIYDKNGKKIYEGDIVKTKSPYDCFLAKVSIHKEGTFYFEGKNGDYIGSLIYL
                     VEDEGYTIETIGNIHENPELLKC"
     gene            complement(3609..4151)
                     /locus_tag="ACJFEZ_000331"
     CDS             complement(3609..4151)
                     /locus_tag="ACJFEZ_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HGG0916474.1"
                     /translation="MKSFNKAFNEKDEYYTPLILIEFLELILKDKNIKTIMCPFDDDS
                     SNYVKFFKAKGFNVINGHINQGKDFFSKWWLDYDFDILISNPPFSKKNEIIGLLTTNY
                     NVPFMLLMNLMAINYQDFSETLRIANKQAPINFIIPNKKVSFDGNTSSFSSGYICNCI
                     DKNIFIDLPHNNTGKNYKNP"
     gene            complement(4156..4533)
                     /locus_tag="ACJFEZ_000332"
     CDS             complement(4156..4533)
                     /locus_tag="ACJFEZ_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YopX family protein"
                     /protein_id="HGG0916475.1"
                     /translation="MKLQDFDFRVWDKDEKCFLDPYTKSRAVVKNLPNEKLLNLEIEL
                     FTGLCDKNGNKIYEGDILYSFEDCSEDEAFKYKVVFKEEAFYLVECGDNGEEYDEDLI
                     SEFRLTELEIMGNIHENAELLRI"
     gene            complement(4530..4802)
                     /locus_tag="ACJFEZ_000333"
     CDS             complement(4530..4802)
                     /locus_tag="ACJFEZ_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916476.1"
                     /translation="MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIK
                     PLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK"
     gene            complement(4866..5045)
                     /locus_tag="ACJFEZ_000334"
     CDS             complement(4866..5045)
                     /locus_tag="ACJFEZ_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916477.1"
                     /translation="MRELSLATFKLLNSVFKTKTAHFNGFLELDFKNKPKLKKQSFKR
                     KKKMTSKQKIRLKKI"
     gene            complement(5042..5527)
                     /locus_tag="ACJFEZ_000335"
     CDS             complement(5042..5527)
                     /locus_tag="ACJFEZ_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HGG0916478.1"
                     /translation="MQINNLEDVNLALKKVAELSVKIEKINGEVTLACNEIKERRAGE
                     IKVLSDELKYVEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKFDN
                     LIKALKSYGLNDCITYKEELNKDAIAELEDSTLVKLGLKRVVKDNFRIEPKIESLEIE
                     K"
     gene            complement(5634..5975)
                     /locus_tag="ACJFEZ_000336"
     CDS             complement(5634..5975)
                     /locus_tag="ACJFEZ_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4406 domain-containing protein"
                     /protein_id="HGG0916479.1"
                     /translation="MALVYVASPYKALVVRESQRKAQAISIAQQECLKIMRECEGFVP
                     VSPILQFSYLDENKHRDKALQMGLELLKACDYIYLSKHKDAKYSQGMQEELALAKKLG
                     IKELVLELPLQ"
     gene            complement(6032..6217)
                     /locus_tag="ACJFEZ_000337"
     CDS             complement(6032..6217)
                     /locus_tag="ACJFEZ_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916480.1"
                     /translation="MTKMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYI
                     AKKIIRFHLGKKLNKSA"
     gene            complement(6214..6405)
                     /locus_tag="ACJFEZ_000338"
     CDS             complement(6214..6405)
                     /locus_tag="ACJFEZ_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HGG0916481.1"
                     /translation="MSFEEIAKELNLSVTRVHQIYTEAIRKLKSPKNKDKWIAIFETI
                     NLIKKEKAKRENLIQGEKK"
     gene            complement(6409..7332)
                     /locus_tag="ACJFEZ_000339"
     CDS             complement(6409..7332)
                     /locus_tag="ACJFEZ_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0916482.1"
                     /translation="MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKEGSSYKY
                     ASKVEPLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAG
                     TGKSRAIKEYATKNGTRVVLFEATTETSKRMLLVGLENKLNICFKGSLDDKIRGIASE
                     LARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEY
                     GQLSSRIGAKWELKGLCYQNKEGLKDEDLKTLCKHFDVEDKKAIDLVFNLARGNFRKS
                     EKLLKRACEFADGKAVELKHIEAAASFLMLG"
     gene            complement(7503..9578)
                     /locus_tag="ACJFEZ_000340"
     CDS             complement(7503..9578)
                     /locus_tag="ACJFEZ_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HGG0916483.1"
                     /translation="MSYFLETKEAAQTFNVSTGALRLAVSRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDELLTAFNQELISKNTLIYDEKMQKVKLSEIITTDNLKTINNSLKTS
                     NLNLAESKINDDLAVLNLKFENLSDELKEDAKSKVKLLKQVEKYIEGGLSIARTLKIE
                     KINRRFYERIRKAYKENGILGLIDTRGLHRKDKTKLSAWMQEYALREYRTFGAGGFNF
                     TELWWQIHKEAAQKESYDFIGFDLGEVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGL
                     DRAKSKFLPAQGNQRELYDMKNMCWQIDSSPADVIVRDDETLEPFRPHILSVVDVFSG
                     MGVATLVGKSNSLSLTRLLWKAIDKFGKPDMIKGDNGKDYLSKDFQSLLDGLNITYDA
                     AIAYAGEQKALVERRFGTLQRARLSQMHGHIGNSLAKREMIEQKTPKKERKAKDEYGF
                     AKKTNQKLLHTFSEACELLEAEVIKWNMSKVRRKKGVKTPLELWNSCDRAIVKISYEE
                     FLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTKIKCVQNIDNIKELFIYDLSGNF
                     LCLALDESIAKLSKESYKMLKKGYESEVKAIKEVLKKDEIAAFTKLNIKQDLQDLQSA
                     FENSLIEAKEVHQKSLAKEALKTQRELEEIKNNANADELILNAKKEINNDESEFDMEA
                     FVEKKYFAG"
     gene            complement(9575..9775)
                     /locus_tag="ACJFEZ_000341"
     CDS             complement(9575..9775)
                     /locus_tag="ACJFEZ_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916484.1"
                     /translation="MLKQYFEDNGINLKKFAQKHNLHYMSLFRVVNGLYSEKYKAKTN
                     TKAVYEKLFELKIIDEMPRACS"
     gene            9925..10599
                     /locus_tag="ACJFEZ_000342"
     CDS             9925..10599
                     /locus_tag="ACJFEZ_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HGG0916485.1"
                     /translation="MYKTTDILNRVYAILNITDDKEFCGIYEIKPNTLSTWRTRNTIP
                     YELLLKISKEQNISLDSIFFGKMRINDDNLQLRYYTDVAAAAGYGAINSKLEYTEIVI
                     SKKFACEALGLPPLTRLDIIKVIGDSMEPFIHNGDVIAVDVSKNKLELVKNGDIVVIN
                     LDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVVNIDQISCAEIIGVVCKAISIKTFEN
                     AIIKYE"
     gene            10599..11297
                     /locus_tag="ACJFEZ_000343"
     CDS             10599..11297
                     /locus_tag="ACJFEZ_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916486.1"
                     /translation="MLYFIIAILIIIIALFIYSGFKTESKLKKIADGVLTKQDLKEIE
                     VISKYYEISLIEAAKIHYGKAIITEEMIERLERPYRELYEQYKKLSINEQGKFLHNLL
                     LNNQDEYAEAIRFIQIAEESVNIALKSKNKDIAESRRKLALEIEQKIQKGYPKAYGLI
                     IDIIQLLEDNYDVNLFENQCIKYYEEAQKLKTIKSKQKRIDYINDLIKEAEINPKIDE
                     KFVNFWKNKVKEIQ"
     gene            complement(11539..12729)
                     /locus_tag="ACJFEZ_000344"
     CDS             complement(11539..12729)
                     /locus_tag="ACJFEZ_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HGG0916487.1"
                     /translation="MLMSYEESLKILHSHIKPFARVEKIALTECLGRILAQDIKASKN
                     QPEFLTSAMDGYAIKFEDQDKPLKILGITPAGTMPEFKVENDTCVKTFTGSLMSEGSD
                     TLVPVENVRVEKDTLFIEKKVSKGFAVREIGENYKKDEILLKKGTKLNYSEIAVLAEL
                     GFFHISVFIKPIIGVLSSGSEIKDLGEALENPAQIRSSNHIAIASLAKNLNCDTRVFP
                     LLKDDEKTTFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYELIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQRSYKKKTP
                     YLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMIAPKECEILENESLVDI
                     IFMP"
     gene            complement(12779..13225)
                     /locus_tag="ACJFEZ_000345"
     CDS             complement(12779..13225)
                     /locus_tag="ACJFEZ_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HGG0916488.1"
                     /translation="MSEFILTNNALDIPRIYAKWYEFAKDKNCGALLTFCGIVREEEG
                     IEALSFDIYEPLLKKWFDEWQKRVKEEGVIFLFAHSIGDVKTHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKS"
     gene            complement(13226..13447)
                     /locus_tag="ACJFEZ_000346"
     CDS             complement(13226..13447)
                     /locus_tag="ACJFEZ_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HGG0916489.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(13449..14990)
                     /gene="cueO"
                     /locus_tag="ACJFEZ_000347"
     CDS             complement(13449..14990)
                     /gene="cueO"
                     /locus_tag="ACJFEZ_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HGG0916490.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFRLESAYYDRDK
                     MMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            15114..16262
                     /gene="nspC"
                     /locus_tag="ACJFEZ_000348"
     CDS             15114..16262
                     /gene="nspC"
                     /locus_tag="ACJFEZ_000348"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0045312 - nor-spermidine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HGG0916491.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQSGVLVASVVDIVENEKRIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLNSKNELEMVREFSYKDYALRN"
     gene            16594..17295
                     /locus_tag="ACJFEZ_000349"
     CDS             16594..17295
                     /locus_tag="ACJFEZ_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0061077 - chaperone-mediated protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HGG0916492.1"
                     /translation="MDLEKLRLARSLYYQCLGELFVFSFSENRLCNLKAYLEAMQESL
                     FDESLRTSFEILLRNLQDVQDLQAFYKEYDELFLALKNTIPMTFSYIEEGFENSKALL
                     NVRQILAKSTIRRNEKIFKEAEDSVGFCFVLMSEFLKNKEDELAKALFEKVINQSIDE
                     FLMLIFSNSKAKLYKEIANIAAQFIEFERYCFELEKPTIKPSKKVQNDLSRSEFLRRE
                     ANKQRRSREKSQGIS"
     gene            17270..17461
                     /locus_tag="ACJFEZ_000350"
     CDS             17270..17461
                     /locus_tag="ACJFEZ_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HGG0916493.1"
                     /translation="MKNRREFLKKSAIALGTASLLGGASVAFGQDEERKDLVRGKSKK
                     KEVLYQRSANWEKYYMRAE"
     gene            17461..20265
                     /locus_tag="ACJFEZ_000351"
     CDS             17461..20265
                     /locus_tag="ACJFEZ_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:18001..18003,aa:Sec)
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HGG0916494.1"
                     /translation="MSSMNETIKLNRRSFLKMAALSSLASPLLARSETLREANADELK
                     EAYEGSQKIKSVCTACSVGCGIIAEVQNGVWLRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLIQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDK
                     VDNAGTSLKALVVMGNGITSTAQQAKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVIDPLYESKEDQEILFELAKKLGFYEDFTKTL
                     RDENGKIVWPENATREIASAVRSIGLNGWSPERLKKHTLNWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGENLLAKNAPINSPID
                     TGYPQITKDNIEKVLGITLSAQEKEKMGAIWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDQIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQKAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELASEQKIKAGDMIWVHSPEGT
                     KIHVRVKLNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGV"
     gene            20269..20910
                     /gene="fdh3B"
                     /locus_tag="ACJFEZ_000352"
     CDS             20269..20910
                     /gene="fdh3B"
                     /locus_tag="ACJFEZ_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase FDH3 subunit beta"
                     /protein_id="HGG0916495.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCSVACDEAHELPINIR
                     RRRVITLNEGVQGKEVSTSISCMHCDDAPCAIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPESTNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHSRLQSRGYGIANPSQSIEWKIAYIGKERL"
     gene            20907..21839
                     /locus_tag="ACJFEZ_000353"
     CDS             20907..21839
                     /locus_tag="ACJFEZ_000353"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HGG0916496.1"
                     /translation="MKKILITLLSTFVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAIIAVLSAFALHYMVIGPKQFSHDGKKIYAFSLFERIFHF
                     IAAISWVILVPTGFVMMFGATFGGGVFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRLSAIIHNFLGIICAVFFGIHIYMAVFAIKGSIHSMVSGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
BASE COUNT         7013 a         3493 c         3383 g         8039 t
ORIGIN      
        1 taaaacaaac ttggttctaa attctctctt aattcttttg tgattaaata cacagcattt
       61 aaacttaaat cgtatttttt agcacattct aaacttgcat ttttagtggt taaaccttgt
      121 tttataagcg ttttaaaatc ttcttttaat tcttcatctc taagtagggt tttgtagctt
      181 ggtatataaa tatttgcacc gccaaattct tttaaaattt ctcgcttatc gttatttttc
      241 acaaaatcaa taaaatattc aaagtattcg ttattgctaa gcaatgctag tcctatttga
      301 gtgtttttgc aaattatagc aaaaaagcta aattttattt agtagggtat aatttttaag
      361 cttgagtaaa aaatatccta tgagcgagaa agaaaaaaga attagagaat tactctaatt
      421 cttcgcaagt cttttctatg agctcatcta tatcaataac caagctttta tcttcttcct
      481 caaaactctc atcaattctt tctctaatta cgcaaatcac attaagcaaa atcccaaaat
      541 cttcatcagt tttaatctga tgggtgattc cattatgcat tatttcaagg cttgttcttt
      601 ttgcggcaaa ggcaatttgt gagtgttttt ctatgcctaa ggttaaaaaa aactctgcat
      661 cgtaagaatg tatttctaaa atcattttaa tctccttttg ttttgatgag acaacattag
      721 cttcgtttgg cttaatgtgt gctgttgttt tctaaatttt taagtcctag gataacttta
      781 ttagcatctt ctatacttaa ataccaaaga tgcaagggtc gttttttaat aatattatta
      841 ataaattctc ttaaagccca ctgagtagga tttttagcat ttttactcca aatggcttgt
      901 atcatattaa gttgcttttt tgtagccctt ccgcttttag tgttttcttt tttaaaatac
      961 cttgcttttt tggtattttg cttttttaaa aacttttcat catagcccaa agttatagca
     1021 aagtccctaa gttcatctat gcttaaatcc ttacttgaag ctttgccata tctttgattt
     1081 aaaacccagc gatagctttc atcatcgctt aagttagcat cctttcttaa ggtgtggatg
     1141 attttaatta ggtgcttttt taaagtgttt tgagtattca ttttttagcc tttaaaattt
     1201 gctctagttt tgaagtgaat ttatcaatat ttgcattata aagcttattt tgattttttt
     1261 tgtattctaa atagttttgc tcatagtctt tatttatagt agcttgatta gcgatttgag
     1321 ttttaataac agggcttatt tcaattttat tatcaaaaat gattttttct tgatttttaa
     1381 acatatattc aacaagttta ttataaaact ctcctgcatt aagtggtttt ctttgctcat
     1441 cacaaagctc tttattggca ttaataaaat aaagattatc cccacaatca acatgcttta
     1501 aaacaggctt tcctaactca tcataaacaa tactaccatc atagtattta agcacaaaag
     1561 aatatgagaa atctcctttt tttgtttgaa aaataaaacg atttgaaaat gaaataaaaa
     1621 gccattctaa aaaagattct atatttttat atcttaggtt taaatcaagc tctgcaaagg
     1681 cacacacaag agaaagtttt tcatagcttg tgccaataaa ttgctttttt agcatggtta
     1741 aatcatagta ttttttaaaa cctagtatat cttttggtgt tttggcttta aaataaagcc
     1801 tttctatggc cacagcttga acttcgctaa taccaaaaag ctcttttagt gcctcttttg
     1861 cattatccat taaaactcct cttctagcca agaagctaaa gctttttgct tatctttgtt
     1921 tttgtatttg tttgctaatt ttggaagcca agttgaatta agtgctcttt tccagcattt
     1981 taaaggcttt ttattagcca ttagccatct tccatcgtct tgcttatagt aatttataaa
     2041 gctatctgct ataaaataag ggatagagca agagttttta gcattaaact catcaatggc
     2101 tttaattaaa tcttctttgc ttggagggtt aaatttcata actcgtctcc aaataagctt
     2161 aattctttgt cgttgctgtc tttattgtca gcttttaaac ttttccaaac aaaagtgcga
     2221 ccattttccc caccaagctc actttcccaa aaaatgcctt taaatttctc taaagtattc
     2281 cttgaaaaat tatcacttct acttacatca agagccaata aaatctcact tgtgcttaag
     2341 tttttttctt ttaataattt taaaactttt tctataaaag cttcttcttt atcgctgatt
     2401 ttagcgtttt gcaagtcggt gtttttaata tttagagttt ttatattgat aaaaaaggct
     2461 tgatctttaa ttcctgccct ttctttttgc acgctaagca atacttcaaa gccttgttct
     2521 aaattagcta ctttttgtaa aaaatacatg caatcacttg agtttctaat atgatttgaa
     2581 cctttgaaag ccctgccatc ttttgtggaa tggtgcaaag ccataatagt tgccccacat
     2641 tctcttaaat tcatcagcaa agacatcaaa gacatcattt tagtatcatt atcaatatct
     2701 gcaaaattgc gtaaagaatc aagtacaaat aaaactcctt catagcttcc tgccacacct
     2761 ttgccctcaa tcatttccaa aagctcataa gctgaagttt ttaaacttga tctgtgaata
     2821 taagtgaatt tactttcatt taaaataagc tcaccaaaac ctctttcatt taaaacattt
     2881 aaaggattat ccatgtcaac ataaacgatg cttttaaccc ttgcatcttt gcaaagtgtc
     2941 tttgaaatgg cggcacttaa ataacttttt ccacttccac catttgcata aataatagtt
     3001 attgctttct taactaaaaa atcagggatt aaaaactcta atttctcgtt taaatcttta
     3061 ttttttagct taaactcatt taaaaaatcc aaattcatct tttttccttg ctaaaactta
     3121 atcaagccca ttaaatcaat ggactttgtt aaattttttg gcttttttaa catatttcat
     3181 ttttatgtta aaatttttaa tattttttaa cattttaaaa gttcaggatt ttcatggata
     3241 ttgccgatag tttcaatagt atatccttca tcttcaacta aataaattaa agagcctatg
     3301 taatctccat tttttccttc aaaataaaaa gtcccttctt tatgaatgct aacttttgcc
     3361 aaaaagcaat cgtatggact tttagtttta acgatatccc cttcataaat ctttttgcca
     3421 tttttatcat aaatcccagt ccatagctcg atttcaaaat cttcaattat atcagttgca
     3481 ctatgtatca aatcgcacat tatatttgaa ataagtccga catcatcaat atatttttta
     3541 caagcagtgt tccaaatcct aaaatcaaaa tcttgtagtt tcattgtttc tccatttgtt
     3601 ttaaattgtc aagggttttt ataattttta cctgtattgt tatgtggtaa atctataaat
     3661 atattcttat ctatgcaatt acaaatataa ccacttgaaa aactgctagt atttccatca
     3721 aagcttactt ttttgtttgg tattataaag tttataggtg cttgtttgtt tgcaattctt
     3781 aaagtctcgc taaaatcttg gtaattaata gccattaaat tcattaaaag cataaaagga
     3841 acattataat ttgtcgttaa aagtcctatt atttcatttt tcttactaaa aggcggattg
     3901 cttattaaaa tatcaaaatc ataatcaagc caccatttac taaaaaaatc ttttccttga
     3961 ttgatatgtc catttataac attaaatcct tttgctttga aaaacttaac ataatttgaa
     4021 ctatcatcat caaaaggaca cataatagtt tttatatttt tatcctttaa aataagttct
     4081 aaaaattcaa ttagaattaa tggtgtgtaa tactcgtctt tttcattaaa cgctttattg
     4141 aaacttttca tattattaaa tccttaacaa ctccgcgttt tcgtggatat tgcccataat
     4201 ttctagttct gttaaccgaa attcacttat taaatcttca tcgtattctt cgccattatc
     4261 accacattca accaaataga aggcttcttc cttgaaaaca actttgtatt taaaagcttc
     4321 atcttcagag caatcttcaa aagaatacag tatatcaccc tcataaatct tatttccgtt
     4381 tttatcgcaa agtcctgtaa aaagttctat ttctaaattt aataattttt catttggtaa
     4441 attttttaca actgctctgc tttttgtgta aggatctaaa aagcattttt catctttgtc
     4501 ccaaaccctg aaatcaaaat cttgtagttt catttgttac ctccatttat actttttata
     4561 gttttttgcc attcctcatc gcttttaaac tcattattaa gttcttttaa aagtttaagt
     4621 gcttcatcat tagacaaatt agaaagaata gctcttattc tttctaatgg cttgatatcc
     4681 ttatggataa ttccaaagaa ttcctcttgc tcttttgtgc ttaaatcttc aaaaagttca
     4741 gccaaatcat gagcatctat atcttctaaa tcactcgcat ctatgcttac attgacatac
     4801 attttttatc cttttgtttt aaattaagtt ttaaaaactt aatcaaatcc gccttagcgg
     4861 acttgttaaa tttttttaag tctaattttt tgctttgaag tcattttctt ttttctttta
     4921 aagctttgct tttttagctt aggcttattt ttaaaatcaa gttctaaaaa gccattaaaa
     4981 tgagctgttt ttgttttaaa aacactattt aaaagtttaa aagtcgctaa ggaaagctct
     5041 ctcatttttc aatctccaag ctttcaatct ttggctctat tctaaaatta tcttttacca
     5101 ctcttttaag acctaatttt accaaggtgc tatcttcaag ctcagcaata gcatctttat
     5161 taagctcttc tttataagta atgcaatcat tgagtccata gcttttaagg gctttgatta
     5221 aattgtcaaa tttttctttc actcttggta aggaaacgct tttgcttaag cgataaccaa
     5281 tcttgccaaa ggtaaattct ttgcttcttt tttccgcaaa ctcgtgttta ttattttcac
     5341 aaaaggttgt aatacattgc tctacatact taagctcatc acttaaaact ttaatctctc
     5401 ctgcacgcct ttctttaatt tcattacaag ctaaagtcac ctcgccatta atcttttcta
     5461 tttttacgct aagttctgcc acttttttaa gtgctaagtt aacatcttct aaattattta
     5521 tttgcatcta ttctcctttt aaattaaatt tattaatttg ataatcccaa agaattacgc
     5581 catatcttaa aagcactgcg tgtttagttt ttttcttgat tatccttaag cccttattgt
     5641 aagggcaact ccaaaactag ctctttaatg ccaagctttt tagctaatgc taattcttct
     5701 tgcatacctt gtgaatattt tgcatctttg tgtttgctaa gataaatata atcacacgct
     5761 tttaaaagct ctaatcccat ttgtaaagct ttgtctctgt gcttgttttc atccaaataa
     5821 ctaaattgta gtatgggtga aacaggcaca aaaccttcac attcacgcat aatttttaag
     5881 cattcttgct gagctatgct aatagcttgt gcttttcttt gactttctct tactactaaa
     5941 gctttgtaag gagaggctac ataaactaat gccattgtta atcctttcta ataaatttaa
     6001 gttttaaaaa acttaatcaa agtgctttaa tttaagcact tttgttaagc tttttaccca
     6061 aatgaaaacg aatgattttt tttgcaatat aatcaggata aattcctttt aaaacatcta
     6121 caaacactcc actttcttta taaataatgc ttacaccctt tatctcaaaa agcgaagcac
     6181 tataatcagc tttctcacct ttaatcattt ttgtcatttt ttctctcctt gtattaaatt
     6241 ttctcttttt gctttttctt ttttaattaa attaatcgtt tcaaagatag ctatccattt
     6301 gtctttgttt ttaggactct ttagctttct aatagcttca gtatagattt gatgaacgcg
     6361 tgtcacgcta agattaagtt ctttagctat ctcttcaaaa ctcatttttt aacccaacat
     6421 taaaaatgat gcggctgctt ctatgtgttt gagctcaacc gcttttccat ctgcaaattc
     6481 acaagctctt tttaaaagct tttcactttt tctaaaattg ccacgagcaa gattaaaaac
     6541 caaatcaatt gcctttttat cctctacatc aaaatgctta caaagtgttt ttaagtcttc
     6601 atcttttaaa ccttctttgt tttgatagca aagtcctttt aattcccact ttgcaccaat
     6661 tctagagctt agctgtccat actcgttata atcatttctg ccaatgcctg taaggttatt
     6721 tttaagtttt ctagtaccta ctaagattaa agcggtgttt gaaaaatcat aaatgcgtct
     6781 taagcactct aatgctctaa atggtaaatg ttcgctttca tcaatgatta aaacctttga
     6841 agttcttgct aactcactag caatgcctct aatcttatca tcaagcgagc ctttaaagca
     6901 tatatttaac ttattctcaa gtcccactaa aagcattctt ttgcttgttt cagtcgtagc
     6961 ttcaaaaagc accactcttg tgccattttt agtggcatat tctttaatgg ctctgctttt
     7021 tccagtccct gcttcgccaa tgattactcc catttctcta ttactcatgg cactttcaat
     7081 ggttacatta atcgcttttg catctttagt agcgataaaa ggggtttgaa gctcttttac
     7141 gcttttttct tctacgaagc ttttaatata tttttcaagt aaaggttcta cttttgaagc
     7201 gtatttatag ctacttcctt ctttcatata gcccaccata tagcttttat taatccctaa
     7261 acgatcggag agattgtttt gagagatgtt ttgggtgctt aaaaactttt tagtaagttc
     7321 tactaattgc attttttatc ctttctctta acttcacagc ggaagtaaat tccgctttgt
     7381 gagcaggagc tttgctcctt gcatccacct aaagcccccg tcccactgaa gtgggggcat
     7441 ctttgtttta gagctttata aaaactcttt aaaatttgaa ttaatcaagc tttaaacaat
     7501 ttttaaccag caaaatattt cttttcgaca aaagcttcca tgtcaaactc gctttcatcg
     7561 ttatttattt cttttttagc gtttaaaata agctcatccg cattagcatt gtttttaatc
     7621 tcttctaatt ctctttgagt ttttaaggct tcttttgcaa gggatttttg atgcacctct
     7681 ttagcttcta tcaaagagtt ttcaaaagca ctttgtaaat cttgtaagtc ttgtttaata
     7741 ttaagtttag taaaggcggc aatctcatct tttttaagca cttctttaat cgctttaact
     7801 tcactttcat aacctttttt aagcatttta tagctttctt tactaagttt agcgatactt
     7861 tcatcaagtg ctagacaaag aaagtttccg cttaaatcat aaatgaaaag ttctttaata
     7921 ttatcgatat tttgcacaca tttaattttt gtgccaacac ttggcattaa agcactttta
     7981 taaactctac tttcaaagtt aatgcctttt ttgcccacga ccctaagttc tttatttcca
     8041 gcattaaaca aaaattcttc ataagatatt tttacaatag ctctatcgca cgagttccaa
     8101 agctcaagtg gagttttaac gccttttttg cggcgaactt tactcatgtt ccacttgatc
     8161 acttcagctt ccaaaagctc acaagcttcg ctgaaggtgt gaaggagttt ttgattagtt
     8221 tttttagcaa agccgtattc atctttagct tttctttctt tcttaggagt tttttgctct
     8281 atcatttctc ttttagctaa gctatttcca atgtgaccgt gcatttgaga taatctagct
     8341 ctttgaagtg ttccaaaacg cctttcaact aaagcttttt gctctcctgc gtaagcaata
     8401 gctgcatcat aggtaatatt aagcccatca agcaagcttt gaaaatcttt agaaagataa
     8461 tcttttccat tatccccttt aatcatatca ggcttaccaa acttatctat ggctttccat
     8521 aaaagtctag ttaggcttaa agagtttgat tttcctacca aagtagctac tcccataccg
     8581 ctaaagacat caacgacact taagatatga gggcggaaag gctctaaggt ttcatcatct
     8641 cttactataa catcagctgg ggaactatcg atttgccaac acatgttttt catgtcatat
     8701 agctctcttt gatttccttg tgcagggaga aacttagatt ttgcacgatc taagccttga
     8761 gtgataatac aatgttctaa tggtttatct ttatagtagt ttttaatgaa attttgtaag
     8821 gtttttacac taaaaagcgg ttttacctct cctaaatcaa aacctatgaa atcatagctt
     8881 tccttttgtg ccgcctcttt gtgaatttgc caccaaagct cagtgaaatt aaatccacct
     8941 gctccaaagg tgcgatactc tcttaaggca tattcttgca tccaagcact aagtttagtt
     9001 ttatctttgc ggtgaagtcc gcgagtgtcg ataagaccta gaatgccatt ttctttatat
     9061 gctttgcgaa ttctttcata aaatcttctg ttaatctttt ctatttttaa agtacgagca
     9121 atgcttaaac caccttcaat atatttttct acttgtttaa gtaattttac tttacttttc
     9181 gcatcttctt taagttcatc gcttaaattt tcaaatttta aatttaaaac agccaaatca
     9241 tcatttattt ttgactctgc taaatttaaa ttactagttt ttaaactatt atttatagtt
     9301 tttaaattat cggtagtaat aatttcgctc aatttaactt tttgcatttt ttcatcataa
     9361 attaaagtat ttttactgat taattcttgg ttaaaggcgg ttaaaagctc atctttactg
     9421 attttaaata gtagtttttt accaccgcgt ccaccttttt cgttatccac ttttaaccac
     9481 tcatatttat ttgagtttct acttactgca agcctcaaag ctcctgtgct tacattaaaa
     9541 gtttgtgcgg cttctttggt ttctaagaag taactcatga acaagcccta ggcatttcat
     9601 caatgatttt aagctcaaaa agcttctcat aaacagcttt tgtgttagtt tttgctttgt
     9661 atttttcaga ataaagtcca ttaactacac gaaataaact catatagtga agattatgtt
     9721 tttgagcaaa ttttttaaga ttgataccat tatcttcaaa gtattgtttt aacaaaatat
     9781 ctcctttaat ttgtaatttt tatttcaaat tgatattttt taagatacaa tttgtaaata
     9841 atttttcaaa ttataagaca aaatgcgaat taagtcaagt tattttatcg cattttgtga
     9901 attttttaat aaaaaaggtt cataatgtat aaaacaacag acattttgaa tagagtttat
     9961 gctattttaa atattaccga cgacaaggaa ttttgtggaa tttatgagat aaaacccaat
    10021 acattaagta cttggagaac tagaaatacc atcccttatg agttattatt gaaaatatca
    10081 aaagaacaaa atatatcgct tgacagcatc ttttttggca aaatgcgaat taatgatgac
    10141 aatttgcaat taagatacta tacggatgtt gctgccgctg ctggatatgg tgcaataaat
    10201 agcaaattgg aatatacgga aatagtaata agcaaaaaat ttgcttgcga ggcattggga
    10261 ttgccgcctt taacaaggct tgatattatt aaagttatag gggatagtat ggagcctttt
    10321 attcataatg gagatgttat agctgttgat gttagtaaaa ataaactcga gcttgtaaaa
    10381 aatggagata tcgtggttat taatcttgat ggtgaaattt actgcaaaaa gctcctcaag
    10441 caaccttttg taaatgaaat tgtattgagc tctatgaatt ctttttataa ggacattgtt
    10501 gttaatatag atcaaattag ctgtgctgaa attataggcg ttgtttgtaa agcaatttca
    10561 attaaaactt ttgaaaatgc tattataaaa tatgaatgat gctatatttt attattgcaa
    10621 tattaattat aataattgct ttatttattt attctggttt taaaacggaa tcgaaattaa
    10681 aaaaaatagc agatggtgtt cttactaaac aagatttaaa agagatagaa gtaatatcta
    10741 aatattatga aatttcttta atagaagcag caaaaattca ttatggtaaa gctattatta
    10801 cagaagaaat gatcgaaaga ttagaaagac cctatcgaga attatatgaa caatataaaa
    10861 aactttctat aaatgagcaa ggaaaatttt tgcacaattt gcttttaaat aatcaagatg
    10921 aatatgcaga agcaataaga tttattcaaa ttgcagaaga aagcgttaat atagctttaa
    10981 aatcaaaaaa taaagatatt gcagaaagca gaagaaaact tgcattagaa atagaacaaa
    11041 aaatacagaa aggatatcct aaagcctatg gcttaattat agatataatt cagcttttgg
    11101 aagataatta tgatgtaaat ctttttgaaa atcaatgcat taagtattat gaagaagctc
    11161 aaaagttaaa aaccattaaa tccaagcaaa aaagaattga ttatataaat gatttaataa
    11221 aagaagctga aataaatcct aaaatcgatg agaaatttgt taatttttgg aaaaataaag
    11281 taaaagaaat acaataatta cattttaagt ttaaggtttg tagaaaaata aaatgcaacc
    11341 aaaaagtatc attttatttt tctatggtta cattttattt ttccgccgac ataagattac
    11401 aagaaatgat gacggagata atattttata tcagtattcc atttacactt gcttatttca
    11461 tttcattttt agttgtttgg cttagtttaa aagggcaaaa agaagtcaaa aaggcgattt
    11521 aaaccttttt gaaaaatttc aaggcataaa gataatatcc actaagcttt cattttctaa
    11581 aatttcacat tcttttggcg ctatcatcag tgcggctttg ttgttaagat tattaatgat
    11641 cgcacttgag ccttcttttt tgccttctaa atttgccaaa atgcgtccat ttttaaattc
    11701 cacattacaa gcaacaaatt ccaaataagg tgtttttttc ttataacttc gttgcaaaaa
    11761 agctttgcaa atatagtctt ttggctgaag tagccaagaa tttaaaatct ctcttgcata
    11821 aagattaaac atcaccatgg ctgagtaagg aaaacctggt aaggcgatga tgaatttttc
    11881 attagcctta gctatcttga tgtgtcttcc tggtttgata tctgctttat cgatgatgag
    11941 ttcatactct ttaatagcct tttttaaaaa gtcaaaatct cccattgaaa ctccgcccgt
    12001 cgtaactaaa atatcacaac tttgcaatgc actttcaagg gtagaaaaag tagttttttc
    12061 atcatctttt aaaagcggaa aaacccttgt atcgcaattt aaattcttag ctaagctagc
    12121 tatagcaata tgatttgaag agcgaatctg agcagggttt tctaaggctt ctcctagatc
    12181 ttttatctcg cttccgctgc ttaaaactcc tatgataggc tttataaata cactgatatg
    12241 aaaaaatcca agttcagcca aaacagctat ttcgctatag tttagcttcg tgcctttttt
    12301 aagtaaaatt tcatcttttt tataattttc tccgatttcc ctaactgcaa agcctttaga
    12361 aacctttttt tctataaaaa gtgtatcttt ttccacacga acattttcaa caggcactaa
    12421 agtatcactt ccttcgctca taagcgatcc tgtaaaggtt ttgacacaag tatcgttttc
    12481 tactttaaat tcaggcatag tccctgcagg tgtgatgcct aaaattttta aaggtttgtc
    12541 ttgatcttca aattttatag cataaccatc catggctgaa gttaaaaatt caggctgatt
    12601 tttactcgct tttatatctt gagctaaaat tcgccccaaa cactcggtaa gagctatttt
    12661 ttcaaccctt gcaaaaggtt tgatatgaga atgtaaaatt tttagacttt cttcataaga
    12721 cattagcatt ttaattcctt aatttaaatt tattaagatt gatttttgaa aaaataaact
    12781 atgattttaa aagtcctgca ccgcaaagtt tggttgatct ttctttggca taaattcttt
    12841 ctttgtttat cacatcatac ttccaaatgg gcgcacttgc tttaaaatct tcaacaaatt
    12901 cattaagaag tttaagtcct aattttcttt gtttgcttaa aattcctgca aaatacgagc
    12961 tttcatgtgt ttttacatct ccgattgaat gtgcaaaaag aaagatcaca ccttcttctt
    13021 taactctttt ttgccattca tcaaaccatt tttttaaaag cggctcataa atatcaaaac
    13081 taagtgcttc aatgccttct tcttcgcgca ctataccaca aaaagtcagc aaagcaccac
    13141 aatttttatc cttagcaaat tcataccatt ttgcataaat tcgcggaata tctaaggcat
    13201 tatttgtcaa tataaattca ctcatttaac ccccacaaac cggtggtaaa agtgcgattt
    13261 tatcaccatc ttttaacttg gtgttttcat caaaaatgat ttcatcattt aaagatacag
    13321 cacaaagttc tagccattct tttaaactct catctttttg caaaatttct tttaattctt
    13381 ttaaattttt tacttcaagt tctaaatttt ctttatttat agggcctaaa aattccactt
    13441 ttaccatttt attcctttac ttctaaattt cccatcattc ctaaatcttc atgttctaaa
    13501 atatggcaat gatacattct aagtccttta aaatcttgtt tcattctaag tcttaactct
    13561 tcattaggac gcacatttat agtatctctt aaggctctaa attcagcttt ttgaactttt
    13621 ccattgagtt ttgatgagat gagttcaaat tgcgtgccgt gtatgtggaa aggatgatcc
    13681 atgtgagatt tgtttatcac tatccagtct tcaactactc caagcttgga gcttaaatca
    13741 atgcgtttta aatcatagct tttgccattg attaaaaaca tagacgcaag agcgattttt
    13801 aattcatttt cactttttcc catcattcca tgcatttgca tatgatcttc actcatgatt
    13861 atttctttaa attccttagg ttcttctaaa ggtttgaaaa tttttaaatt ttttggaagt
    13921 tctaattttt ctttttttag gctaatacta gctaaaaata gggtattaga ttcttctttt
    13981 accatcattt tgtccctatc ataataagca ctttctagtc taaattcccc atcttttgga
    14041 gcgtcgatta aaacttctac acgagaagca ggacttaaga aaagttcttc tttataaata
    14101 gctttttcta taagtccacc atcagtacca acaagtataa acttagcccc ttgtatgcgt
    14161 aaatttaaat atcttgctgc agtagcatta taaatgcgta tgcgttcgtt tgtggcgagt
    14221 ttgattttag gtttaaattg tccattgatg agtacaaatt ctccttctct accatttagc
    14281 caatcattta ggttattgtt tggaatttga gcgttttcat caagacgcaa atcgctaatc
    14341 atcaaatctt tttcttttaa atgacttaaa gcatcttttt ttgctttgat cacaaaagcc
    14401 cctgctaaac ccataaaaac ttgtttagaa gccgtataat gaggatgtgg atgataccag
    14461 taagttcctg cgctatcttg aggaatttca aaacgatata ttctttcttc tcctgctaag
    14521 ataggatcat gtgggcttcc atcttgatca ggtggcacag gaacgccatg ccaatgtata
    14581 gttgtagctt ctttgagttt gtttttgact aaaatttcaa gtttatctcc ttcaaaaact
    14641 tctatttttg gagcaggtac tagaccattg taagtataaa ataaggtttt tttacctttg
    14701 ataagctcta tatgattttc tttgatttct agggtagcac gaaaaatatt tttttcttta
    14761 ctttcatttt tgagtaaagg caaggctttt aaaatttctc cttgggggaa ttgttttgga
    14821 tctaaaagtt ttaaattttt tggagcaaag tttataaaag aagtatctaa gtcatgattt
    14881 atagaatgat ttttatgcat ggagtgcata tcgtgcatag gatttgcata ggctacaccc
    14941 atacttgcta aagtgagtgc attaaatttt aaaaaatttc ttctattcat tagtttttcc
    15001 ttttgcttga ttttttgtat tatagtcatt atttttttaa ctttagtaaa tatttatttt
    15061 gaaaatttgg tttaattttg ttatgatttt agcaatttaa tcaaggaaaa ataatgtttt
    15121 atgaaaaaat tcaaacccca gcttatattt tagaagaaga taaattaaga aaaaattgtg
    15181 agcttttagc aagtgttggc gaaaaaagtg gtgctaaagt gcttttagct ttaaaaggtt
    15241 ttgctttttc aggagcgatg aagattgtag gtgagtatct taaaggctgt acttgtagcg
    15301 ggctttggga agcaaaattt gctaaagaat acatggataa agaaattcat acttattcac
    15361 ctgcttttaa agaagatgaa ataggtgaaa tagccagttt atctcatcat atagtgttta
    15421 actctttagc ccaatttcat aaatttcaag ctaaaacaca aaaaaattcc ttaggtcttc
    15481 gttgtaatgt tgaattttct ctagccccaa aagaacttta caatccttgt ggaagatact
    15541 caagacttgg aattcgtgct aaagattttg aaaatgtgga tttaaatgct atagaaggac
    15601 ttcattttca cgcactttgt gaagaaagtg ctgatgcttt agaagcagtt ttaaaggctt
    15661 ttgaagagaa atttggcaaa tggatagggc aaatgaaatg ggtgaatttt ggaggaggac
    15721 atcacatcac taaaaaaggc tatgatgttg aaaagcttat tgctttgtgt aaaaatttca
    15781 gtgataaata tggcgtgcaa gtttatcttg agccaggaga agctgtgggt tggcaaagtg
    15841 gggttttagt agcgagcgta gtggatatag ttgaaaatga gaaaagaatt gctattttag
    15901 acacttcaag tgaagctcat atgcctgata ccatcatcat gccttataca agtgaagttt
    15961 taaatgctag aattttagcc acaagagaaa atgaaaaaat ttcagactta aaagaaagcg
    16021 aattttccta tttgcttact ggaaatactt gtttagcggg tgatgtaatg ggagaatacg
    16081 cctttgataa aaagcttaaa atcggcgata aaattgtttt tttagatcaa attcattaca
    16141 ccattgtgaa aaacacaact tttaatggca taagacttcc aaatttaatg cttttaaatt
    16201 ccaaaaatga gcttgaaatg gtaagagaat tttcttacaa ggattacgct ctaagaaatt
    16261 aaaatttttt ggaagaataa ttttattatt tctttttagc ataaaatatt ttttaaatga
    16321 caaaatgaaa gttttgtttt ttaggtttaa atattttatg caactttttt taaaaaacct
    16381 cattaaaata ctattttata ggcttttaaa gctaaattct attttttcag attaggcaga
    16441 tttttaagaa aatttcagtt tattttaaaa caaatcatat taagataaat cagtcaaaaa
    16501 taaggattaa gaaggaaaat taggtgtaat ttgcataata ttattttgca aattatttaa
    16561 cggcaaatct tcaaaaattt gaatgagtta aaaatggatt tagaaaaact aagattagct
    16621 agaagtcttt attatcagtg cttaggagaa cttttcgttt tttcattttc tgaaaataga
    16681 ttgtgtaact taaaagctta tttagaagct atgcaagaga gtttatttga tgaaagttta
    16741 agaacaagct ttgaaatttt acttcgtaat ttacaagatg tacaagatct tcaagcattt
    16801 tataaagaat acgatgagct ttttttagca cttaaaaaca ctattcctat gactttttct
    16861 tacatagaag aaggctttga aaattcaaaa gcattgctta atgtaaggca gattttagct
    16921 aaaagcacaa tccgccgcaa tgaaaaaatt tttaaagaag ctgaagatag tgtaggattt
    16981 tgttttgttt taatgagtga atttctaaaa aataaggaag atgaacttgc taaggcattg
    17041 tttgaaaaag tcatcaatca aagcattgat gaatttttaa tgcttatttt ttcaaattca
    17101 aaagcgaagc tttataaaga aatagcaaat attgctgcgc agtttataga atttgaaaga
    17161 tattgttttg aacttgaaaa acctactata aaaccttcta agaaagttca aaatgattta
    17221 tctcgttctg aatttttaag aagagaagca aataaacaaa ggagatctcg tgaaaaatcg
    17281 cagggaattt cttaaaaaat ctgctattgc tttgggtact gcaagtcttt taggcggtgc
    17341 aagtgtagct tttgggcaag atgaagaaag aaaggatctt gttagaggca aaagcaaaaa
    17401 gaaggaagtg ctttatcaaa gaagtgctaa ttgggaaaaa tattatatga gggctgaata
    17461 atgtcaagta tgaatgaaac tatcaagctt aatcgccgtt cttttcttaa aatggccgcg
    17521 ctttcaagtt tggcaagtcc gttgctagct agaagcgaaa ctttaagaga agcaaatgcg
    17581 gatgaattaa aagaagctta tgaaggaagt caaaagatta agagtgtatg taccgcatgt
    17641 tctgtaggct gcggaattat tgcagaagtt caaaacggag tgtggttgcg ccaagaaatc
    17701 gcacaagatc accctgttag ctcgggaggc cattgctgta agggctctga tatgatcgat
    17761 atggtgcgtt ctcatgtgcg tttaaaatac cctatgaaaa aagaaaatgg agaatggaaa
    17821 cgcataagtt atgagcaagc tttaagtgag atcggagaaa aactagctgc ttatcgtaaa
    17881 gaaaatcctg aaagtgttat gtttttaggt tctgcaaaac ttaataatga acaagcttat
    17941 tatataagaa aatttgcagc attttttgga accaataatg tagatcatca agctagaatt
    18001 tgacacagcg caacagtcgc cggtgtggcg aatacatttg gttatggcgc tatgacaaac
    18061 catcttggag atattcaaag aagtaaatgt attattatta ttggagcaaa tccagcagta
    18121 aatcaccctg taggttttag acacttctta aaagcaaaag aaaaaggtgc taagcttatc
    18181 gttgtagatc ctagatttac aaagagtgca gcaaaagcag atatttatgc aagaattcgt
    18241 ccaggtactg atattgcttt catgtatgga atgttaaaaa tcatttttga tgaaggttta
    18301 gaagatacaa aataccttga tgaaagagtt tttggtatcg ataaaattcg tgaagaagct
    18361 gcaaaatgga ctgctgaaga agtagaaaat gtaacaggaa tttctaaaga actcctcatt
    18421 caaatcactc atgaagtagc taaaaataaa ccaactacat tgatttgggc tatgggctta
    18481 actcaacata ctgtaggaac ttcaaatacg cgtttagcac ctatagtaca aatggtttta
    18541 ggaaatatag gtaaattcgg cggcggggta aatattttac gcggacacga taatgtgcaa
    18601 ggtgcttcag atatggcgtg tttgagcgaa aatttaccag gctattatcc tttaaatgaa
    18661 gcgacttgga gatattatgc taagatttgg ggcgttgatt atgagtggct tttaggaaat
    18721 tttgtaagta aagattggat gcataaaact ggactttcac ttgctagatg gtgggctgca
    18781 gccttaaatg gcaaagatgg aaatgataaa gtggataatg caggaacgtc tttgaaagct
    18841 ttggtggtaa tgggaaatgg tatcacttcg actgcacagc aagctaaagt taaagaaggt
    18901 ttggaagctt tagaactttt ggttttagct gatccttttg tcaatgaagc aggaattatt
    18961 gcagaaagaa aagatggaat ttatctttta cctgctgcaa cgcagtttga aacaagtgga
    19021 agcgtaacag ctacaaatcg tagcggacaa tggagattta aggttataga tccactttat
    19081 gaaagcaaag aagatcaaga aattttattt gagcttgcca aaaaattagg tttttatgaa
    19141 gactttacta aaaccttacg cgatgaaaat ggcaagattg tttggcctga aaatgctact
    19201 agagaaattg caagtgcagt tagaagtata ggacttaatg gttggagccc tgaaagactt
    19261 aaaaaacata ctttaaattg ggataaattt gatgaggtga ctttagaagg aaaagacgaa
    19321 gtagcgggtg aatactatgg gcttccttgg ccttgctgga gtgataaaca tccaggatct
    19381 cctgtacttt ataataccga tatcgaagta gcaaaaggtg gtatgggatt tagaaataat
    19441 tttggccttg agtatgaggg tgaaaattta ttggctaaaa atgctccgat aaattcacct
    19501 atagatacag gctatccaca aattactaaa gataatatag aaaaagtttt aggtattact
    19561 ttaagtgccc aagaaaaaga aaaaatgggt gcaatttggt cttatgatga tagtaatatc
    19621 atagcgacta aatgtataga aaaaggtata gtgccttatg gaaatgctaa agctagggct
    19681 gtggtttgga catttaaaga tcaaattcca cttcaccgcg agccgcttca ttctccaaga
    19741 aatgatttgg tgcaaaaata tcctagtttt gaggatcaaa aagcgcttta tcgtgtggat
    19801 acaaaatttg tttctgtgca aaaggctaag gattattcaa aagaattccc actcaaccta
    19861 gtcacagcaa gacttgtaaa tttaaatggt gcgggtatgg aaaatagagc ttcaatgtat
    19921 cttactcgct tgacacctga gatgttttgt gagataaatc ctgagcttgc aagtgagcaa
    19981 aaaattaaag caggggatat gatttgggtg cattctccag aaggaactaa aattcatgtg
    20041 agagtcaagc tcaatccagg tgtagcaaaa gatatgattt tcttaccttt ccattttaca
    20101 ggtgtgatgc aaggtgtgga tttaacacac aatttccctg aaggaactaa accttatgca
    20161 agtggagaaa gtgcaaatac agttacaaat tatggttatg acattatgtg tcaaattcct
    20221 gaaaccaagg gcggcttatg ccgtatctca aaagatgggg tgtaaaagat gagtaaggta
    20281 aattttgcaa atttagaaaa agaacgcttg aaattctttt gtgacaatga gcgttgtatt
    20341 gattgtaatg gatgttcggt tgcttgtgat gaagcgcatg agcttcctat caatatccgt
    20401 cgtcgtcgtg tcatcaccct taatgaagga gtacaaggaa aagaggtgtc tacttcgatt
    20461 tcttgtatgc attgtgatga tgcaccttgt gctatagttt gccctgtgga ttgtttttat
    20521 atccgtgcag atggtattgt tttacacgat aaagaaattt gtataggttg tggttattgt
    20581 ctttacgctt gtccttttgg tgctccacaa tttccaaaag atagcgtatt tggtaacaaa
    20641 ggcattatgg ataaatgtac gatgtgtgca ggtggacctg aaagtacaaa ttcggaaaaa
    20701 gaaagagagc tttatggaca aaatcgtatc gctgaaggaa aagtgcctgt atgtgcagct
    20761 atgtgctcaa ccaaagcact tttagtaggt gaaagctcta agatagaaga aatttatcat
    20821 agcagattgc aaagtagggg ttatggaatt gctaatcctt cgcaaagtat agaatggaaa
    20881 attgcttaca taggaaagga acgcttatga aaaaaatatt gataacactt ttaagcactt
    20941 ttgtaagttt gtttgcctat ggcagtgaac gaatgggaca agatacacaa atttgggatt
    21001 ttcatcgtat tacaaatatt ccaaattatg atacttttgg taagctttgg acaactttgc
    21061 aaggtgagta tatagctact atagctttga ttgcaatcat tgcagttctt tcagcttttg
    21121 ctttgcatta tatggtgata ggtccaaaac aattttctca tgatggaaag aaaatttatg
    21181 ccttttcttt atttgaaaga atttttcatt ttatcgcggc tatttcgtgg gtgattttgg
    21241 tacctacggg ttttgtgatg atgtttggtg caacttttgg aggcggcgta tttgtaagag
    21301 tatgcaaaaa cttacatgct tttgcaacgg ttttatttat catctctata atccctatgt
    21361 ttttatggtg gattaaaaga atgcttcctg caagttatga tatcagatgg atgatgatag
    21421 taggtggtta tttaagcaaa gtaaaacgcc ctgtacctgc aggtaagttt aattttgggc
    21481 aaaaatcttg gtattatata gctgtatttg gtggattttt gatgataatt acaggtggat
    21541 ttatgtattt tcttgatttt aattctactg ccattcaagg cctttttggt ttaacacaaa
    21601 ttgagctttt aagactttca gctattattc ataatttctt gggaatcatt tgtgcggtat
    21661 tctttggaat tcacatttat atggctgtat ttgctattaa aggaagtatt cattctatgg
    21721 taagtggata taaagaagaa gaagaggttt atattttaca tagctattgg tataaagaat
    21781 taagcaataa aaagcaaatt gaacctagtt tttcttatga tcctaatgta aaaatttaaa
    21841 attttattct atgaaaatct cttaaaaatt ttttgggaga ttttcacaaa tttttttaag
    21901 tctaaatttt ataaaaaata cttttaat
//
LOCUS       DBBXRO010000012        21550 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.012, whole genome shotgun sequence.
ACCESSION   DBBXRO010000012 DBBXRO010000000
VERSION     DBBXRO010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21550
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.012"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(63..1313)
                     /locus_tag="ACJFEZ_000354"
     CDS             complement(63..1313)
                     /locus_tag="ACJFEZ_000354"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HGG0916497.1"
                     /translation="MLRQKTTQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEENP
                     FLSVQEPIQTHEHNKNYFDSFYKRNANSAFVDNKGLATKSVYELLNEQIIPPLFPTSK
                     SQELAGKIVECLNHEGYFEYDEEILKDYDINELERIRARFKFLDPVGVGAKDYKEAFL
                     FALENIELDAELYDFCKMLIQDFENIQNYTKEPLYKEALAIFKRFSIPPFLEYFEDSR
                     VIIPDIFVYRENDEIKVKINDDYYPEISIETDGLTHEYLNHYIKEAKNLVDALMMRKA
                     TLYKIGLMIVEYQYDFFMGKDIKPMTFKDLALDLERNASTISRAVANKYLSCDRGLIP
                     LRDFFAFALDEEGETSNVGVKDFVANLVKNENRSKPLSDSKILELIKKEFKVDIGRRT
                     ITKYRKHLNIPSSTDRKKLYELEG"
     gene            complement(1313..2041)
                     /gene="lptB"
                     /locus_tag="ACJFEZ_000355"
     CDS             complement(1313..2041)
                     /gene="lptB"
                     /locus_tag="ACJFEZ_000355"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HGG0916498.1"
                     /translation="MSKLEIVNLEKIIKKTKIIQGISLELNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDITKEPLNKRARLGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHEKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQSLINELKKLDIGILITDHNVRETLAICDRAYVIRSGSLLASG
                     NAEEIANNKDVKKYYLGAEFKLLD"
     gene            complement(2034..2441)
                     /gene="tsaE"
                     /locus_tag="ACJFEZ_000356"
     CDS             complement(2034..2441)
                     /gene="tsaE"
                     /locus_tag="ACJFEZ_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HGG0916499.1"
                     /translation="MKEFILAKNELNTMLQTLPKQGVVLLQGELASGKTSLVQAWVSF
                     LNLDEKVDSPTFSIMQKYENQDICIYHYDIYQEGLEGLLKNGLFENFFEEGLHLVEWG
                     DENLKKALLKLGIPSLEIKISVEDDKRKYVIHE"
     gene            complement(2438..2683)
                     /locus_tag="ACJFEZ_000357"
     CDS             complement(2438..2683)
                     /locus_tag="ACJFEZ_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HGG0916500.1"
                     /translation="MRVDKFLNAVNITKRRAISEDMCRSGVVGINGVIVKASKEVKVG
                     DIISLHFTDYTQEYKVLALPTTKNIPKNAQSEYVVKL"
     gene            2823..4043
                     /locus_tag="ACJFEZ_000358"
     CDS             2823..4043
                     /locus_tag="ACJFEZ_000358"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HGG0916501.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYKCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENVFIKDLREEFVKDYVFPMFRANTIYEGEYLLGTSIARPLI
                     AKTQAQIALQTRADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKEAP
                     NESEIIELDFQKGDLVAINGEHLSPAGLLSKLNELGAKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRAIESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQKHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4059..4502
                     /gene="rplI"
                     /locus_tag="ACJFEZ_000359"
     CDS             4059..4502
                     /gene="rplI"
                     /locus_tag="ACJFEZ_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HGG0916502.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFELASLEKLKEELSKVTLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQTHIEIDKKSLECDTLKSLGTHEVSVKLGHAIHAKFNINIKAE"
     gene            4502..5044
                     /gene="hslV"
                     /locus_tag="ACJFEZ_000360"
     CDS             4502..5044
                     /gene="hslV"
                     /locus_tag="ACJFEZ_000360"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HGG0916503.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHANLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            5041..6360
                     /gene="hslU"
                     /locus_tag="ACJFEZ_000361"
     CDS             5041..6360
                     /gene="hslU"
                     /locus_tag="ACJFEZ_000361"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HGG0916504.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESVIEIEISQSMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAAEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSSVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYEQLLKTENLELEFDDEAIKEIAKIASKANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            6357..7232
                     /gene="era"
                     /locus_tag="ACJFEZ_000362"
     CDS             6357..7232
                     /gene="era"
                     /locus_tag="ACJFEZ_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HGG0916505.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMNGEDQIIFIDTPGLHESKATLNQFLIQSAIKSMGDCDVILFVASIFDSVKDYENF
                     LSLNPKVPHIIVLNKVDLADNGTLLKKLNEYAKFSKYFKAILPYSCKKKNYQKPLLNE
                     LCKLLPEHEYFYDSEFLTPSSQKDIFREFILESIYENLSEELPYSCEIMIKNTKETSN
                     LFIIDAQIITDTNSHKAMLIGKDGTTLKRIGKDARFKISKLIQNKVLLKLFVIVKKNW
                     QKDEIFLKKILNYEE"
     gene            7222..8298
                     /locus_tag="ACJFEZ_000363"
     CDS             7222..8298
                     /locus_tag="ACJFEZ_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916506.1"
                     /translation="MKNKAHFISFENLIYKQKNGNFEEDDLFKELTKECDLQNPFEYQ
                     LAFLKQDQIYHCFLARVAKLPKTQFCFPQPLVFQSLFLENKIKEENFCILEIKPQKVF
                     LCFYEQGKFKTFKTLDFCDNIEEFINKSRILELLQHYESKILLSTKAHEIFNLISAKA
                     KLPFKMIQEDKIALSKHSIHHLDKNANFIKHYKKYLPWYFKFIFLFALSFIISIVVLS
                     LIDFAQYQNAKTTHIQNEISQNKIYEIQEKQSQKLKANIEQLQLEIQTQNLLLEKYSE
                     QLSKITQNFKADKNTILILTKAIAWLNDHSLRISNLMIDKTLITIKFSNEEDFNKALQ
                     FTSPQFSLISQDKSLHEITLRALQ"
     gene            8295..8852
                     /locus_tag="ACJFEZ_000364"
     CDS             8295..8852
                     /locus_tag="ACJFEZ_000364"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916507.1"
                     /translation="MNQIEQFLENLSSREKILIYLTTILLAILLSFHFYHSYLKSFFN
                     HEFFIQSNDMDKIITTNQDLNQQIKQLEKELVFIQDKIKSYENYLNVFNKNYETYIKN
                     LQNLALENNLWISNIEWLQSEENSYRKISLNIFGDFSPILSFMKQLENSDLHYQIHKF
                     EIDNTTSLNLHLKLTLSFISLAKLK"
     gene            8937..10724
                     /locus_tag="ACJFEZ_000365"
     CDS             8937..10724
                     /locus_tag="ACJFEZ_000365"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HGG0916508.1"
                     /translation="MNIRKIRVEKIRQFMIKEKLDAYLILSADPHLNEYLPSFYQSRA
                     FVSGFKGSAGSLIITSQDAFLWTDGRYWIQAQKELEGSGILLQKQDANNTFLKWLKEN
                     LNEEQNLGIDFSVLSLSLQKEIQKNCKAELKNIDLISLIWEDRPALPKNKVYEHELEY
                     CSYSRKEKLLLVREKMNKLQAKNHLISSLDDIAWITNLRGNDVCYNPIFLSHLLILEG
                     KALLFIDREKIDFELEKKLNLDGICLKEYNKIQDELKKLQNTNLLIEPSKTTTLLIEI
                     LDKSVEILEEINPSTHLKAIKTDKEIAHIQNAMIEDGVALCKFFTWLEENIKNNTQIS
                     ELDIDTKITEFRSQSPYYISNSFSTIAGFNANAALPHYKAEKESFSYIQKNGLLLIDS
                     GGQYKNGTTDITRVVAIGELNGEQIHDYTLVLKAHIAIASTIFPKDIAMPLLDAITRA
                     PLWQEQLDYTHGTGHGVGYFLNVHEGPQTLSYFSPVLEKTKAKEGMLTSIEPGIYRTG
                     KWGIRLENLVVNAKIENPKNKDFGEFLYFKPLTLCPFEISCIDKTLLDAKEKAWINTY
                     HKEVYEKLSPKLHDNLKALKWLKERTKAV"
     gene            complement(10757..12592)
                     /gene="mrdA"
                     /locus_tag="ACJFEZ_000366"
     CDS             complement(10757..12592)
                     /gene="mrdA"
                     /locus_tag="ACJFEZ_000366"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HGG0916509.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FIVPTRGQILDRNGTPLAINDLGFSISIKPYLTLKRANRGVLEKELNQLQGFFPDLNT
                     TKLAEFYKRNDSYYNQDFIKIIDFIPSQEMMKHYSELNLNQNIRIDPAVQRKYPFGKL
                     ASHIIGYVGKADLQDIKENEISKLTNFTGKSGIERYYNDVLQGEKGTKIYKVNALNQE
                     VEQLSYTSALSNDIELTIDIELQSFLTQLFEGNAGAAIIMDISDGSILAAGSFPEYDL
                     NPFVTGISYKEWDELSNNLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKSINPSTQF
                     FCNGSIELGGRFFRCWNRAGHGAVDLKHAIKASCDVYFYDGSLQVGIDQISRTLSRIG
                     FGAKTGVDLPNEFVGILPSREWKMQRYKQAWFQGDTLNTSIGQGNFLATPMQIARYTA
                     QIAKGAEVVPHFLKSVENNNTITEDKAQDSNEIFTLFEKSQLPYIRDAMYAVANEQGG
                     TSYHYLRNLEVKVAAKTGTAQVVGFSQADKNRVDEKQLRYYTRSHAWVTSYAPYSKPR
                     YVVTVLVEHGGRTISSGVATAKIYQKMIELGYFKPENKANSPKKN"
     gene            complement(12592..13086)
                     /locus_tag="ACJFEZ_000367"
     CDS             complement(12592..13086)
                     /locus_tag="ACJFEZ_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916510.1"
                     /translation="MRKTISAYKVKLNGSYVFLGFLCILYQILGSVFLYMPLLYGVFF
                     CYMYFLLEERQKTFNKLDFRWYFSLFFLFFTDITYDFFLFSSWLAFVIFYYACADWIK
                     TNLKIGKIIPIILVLCVYAFIFILDAIFSYVGDQEFKMPNFGYMISIMFECLFAYMLY
                     RSKF"
     gene            complement(13088..13678)
                     /gene="yihA"
                     /locus_tag="ACJFEZ_000368"
     CDS             complement(13088..13678)
                     /gene="yihA"
                     /locus_tag="ACJFEZ_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HGG0916511.1"
                     /translation="MIISAKFITSLDKFDKNFASHFSEVAFLGRSNVGKSSLINSLCK
                     QKKLAKSSATPGKTQLINIFEVLCKKDEDKFSIHFIDLPGFGYAKVSKNLKEIWNKNL
                     DEFLKLRSSIKLFVHLIDSRHTNLDIDLNLDKYLKSFLKPDQRVLKVFTKCDKLNQSE
                     KAKLKNSFKDAILISNLNKMGLDDLEHEVIKQTLGL"
     gene            complement(13675..14106)
                     /gene="lptA"
                     /locus_tag="ACJFEZ_000369"
     CDS             complement(13675..14106)
                     /gene="lptA"
                     /locus_tag="ACJFEZ_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HGG0916512.1"
                     /translation="MSISISLASQIEVKALNFYSDENKGESILSGNVEIIRGDDILTA
                     EKVIIYTDKNRKPMRYEAVQNANFKIVLKGKTYKGSGDKFIYNVAKDIYEIDGNAFIN
                     ELESNQKLYGDRIIVDKRNNVYRVESKDKKPARFIFDLEQK"
     gene            complement(14118..14630)
                     /locus_tag="ACJFEZ_000370"
     CDS             complement(14118..14630)
                     /locus_tag="ACJFEZ_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916513.1"
                     /translation="MAIRIFGILIALFTITFTILSLQDPYSLNIKSYALNFKNIEASD
                     LNAYELNASNVKSYYKAQSWARYTDKDEFDNFVNFNLDFNLSANKLELKGKEMDKVLL
                     EGNVTYIGLNNTKIFADKVEYAPKNKILSTNTGFKALINGSIINGNTLNYDVEKKILQ
                     VQGVNAWLER"
     gene            complement(14621..15109)
                     /locus_tag="ACJFEZ_000371"
     CDS             complement(14621..15109)
                     /locus_tag="ACJFEZ_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HGG0916514.1"
                     /translation="MIELIFLDVDGCLTDGKIIYTSNGSVIKEFDVKDGAAIEAWIKL
                     GKKIAIITGRNCPCVSARAKDLKIEIVHQGVKDKLTCAKKILEELNLDFSQCAAIGDY
                     FNDKNLLENVGLSFKPKDAHRDLKVDITLDKKGGKAAVAQMIEYIIKKNDMQEEWDKL
                     WL"
     gene            complement(15114..15953)
                     /locus_tag="ACJFEZ_000372"
     CDS             complement(15114..15953)
                     /locus_tag="ACJFEZ_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HGG0916515.1"
                     /translation="MQTIKQKLKKTLPKLLAASLVATFSSGCFGGLFSSVGSAQIYYP
                     SNDFHSSPSGSGSKGTMKPYTINGKTYYPTVVSVGETADGIASWYGPGFHGKKTSNGE
                     TYNQNGLTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQID
                     MIAAGTAPVRLEVIGFGSANSGNNVVHSNINYGASGGIANNGQIYEGGNFMVQIGAFK
                     NPSGAQTIASRYKTYRTYSSTIRKSSVDGLSRVFLTGFRSEEEARDFAASGAFAGAFV
                     VRE"
     gene            complement(15898..17031)
                     /locus_tag="ACJFEZ_000373"
     CDS             complement(15898..17031)
                     /locus_tag="ACJFEZ_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HGG0916516.1"
                     /translation="MKKIIFCFILFYNFLFAQTTTPEFYERQMSVLRNLDIDPSFISD
                     LAFVQSQQDLRSKHAPTLIDGIQNFSKVTPMIRKILAQQEVPEEILYLAMVESGLKAH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAAVHYLKSLKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLRVLIDPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDGALVNYALNNDFAKVDAPSSVALKDLAKNLNMDLATFKKYNPHFKHGFTPPGK
                     GYYMYIPLNKVAFFDKNFKVEKLAKVDTTIPMTKIYVVKSGDSLYKIAKKYNTSVEQI
                     RELNKIAKNHLSINQKLIIPIKENKNANYKTKAKENFTQVVSR"
     gene            complement(17034..17846)
                     /locus_tag="ACJFEZ_000374"
     CDS             complement(17034..17846)
                     /locus_tag="ACJFEZ_000374"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HGG0916517.1"
                     /translation="MFLNLEFKDGLKIIDTHCHLDSEVFKEDLDELLKHSFDNGIEKI
                     IIPGADIKDLPYAAELASKYENVFFAAGVHPYELEGFDEKILRAYLQDEKCVAVGECG
                     LDYFRFKSEDLKEREKEKEEQKRLFVAQLELAKEFKKPVIIHSREANNDTYEILHEHS
                     KDLVGGVLHCFNASEHLLRLSDDGFYFGIGGVLTFKNAKNLVNILPQIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMSEILDLPKQELLRICLENSYRLFFKG"
     gene            complement(17837..19081)
                     /locus_tag="ACJFEZ_000375"
     CDS             complement(17837..19081)
                     /locus_tag="ACJFEZ_000375"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HGG0916518.1"
                     /translation="MNKKILLIDDNKMLGKLLAKKIQTTLNHEVDIVFSLAEVKALPN
                     DEYFLTFADLCLPDAPNGEVVDYVLAKNWPVIVLTASNDKATRDKFMDKDILDYIFKE
                     SDTCIDQIIDSIVKLERYAKTKVILALSKLPERNEIKKILTQRKFNVLAAAHGEEAMS
                     YLNDNSDVKLIIADANMPVISGSELLSEVRARFSDDELGVIILGDKDDALEASLLVSG
                     ANEYLVKPLSKESLNCRLDKCLHYMANMQFLSIYNNLDPISGIKNSNALLSCVEDYLN
                     EIVSKEEEFAFAFLDIDNLRNLNEEYGYEVGDKIIKICADEIVNETKGRDIVGRYSAE
                     KICIVLKNISQERAIKILSRIRVNIKKVGILVNLDEVFFTASIGVVFAKSGDKFEILV
                     DKASKALSQAKANGKDRVEVCS"
     gene            complement(19170..20693)
                     /locus_tag="ACJFEZ_000376"
     CDS             complement(19170..20693)
                     /locus_tag="ACJFEZ_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0916519.1"
                     /translation="MINRVLMKENLGFKEVELEISQGLTVFTGLSGAGKSVLFKGILS
                     AFALSESEAKLVEIELDDKIDLEEYGIEGEEENVFKLLKDKNTKYFINNQSISKKSLI
                     HLSKKFIKYLSAKEINEFSNEKFLNLLDALECAKNPEFEDFLSHFKDDYKQWLQISEE
                     LTTILEEEKRIEELKELASTQIERISKINPKVGEYEELLNLKKKLSKKDKIEAAWEKA
                     SAIFELEKVVIDALNLSEKDTSFFSECLNELRIIAENEKIEDLDFDIEEVLNRIEDLS
                     SLIKRYESIENALEVLENKKNELAHYDNLSFEKKELEKKLEKIEKKINQSTQLLTQAR
                     MQNLKTLEDFLNDYLKNLYMKNVSLELVDTSKITSLGKDEIKLSINAANLKNLSSGEL
                     NRLRLAFIATECRILNSGTGIIFLDEIDANLSGKEAMSIANVLNELSAFYQIFAISHL
                     PQLSSKAHNHFLVEKNASCSTVKKLKDKDRIKELARMISGETITDEALEFAKTLFKT"
     gene            complement(20693..>21550)
                     /locus_tag="ACJFEZ_000377"
     CDS             complement(20693..>21550)
                     /locus_tag="ACJFEZ_000377"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HGG0916520.1"
                     /translation="QNKIDYKNIKKIGLAARPNSNLDKEILILKEILEKKGVELLLYK
                     ESSEIVKLPKYDLDTLFELSDFVISLGGDGTLISLCRKACEYNKAVLGIHAGHLGFLT
                     DFKVDEAEVFFEAFFRGEFRVENPFLLSIILESNDGQIMQKFAFNDVVISKDRKASMA
                     HIEVFRKAKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLTQ
                     RPIVLPKGFDLEIGAKDCIFSIDGQENYKMNDFKSVKVGLSDKSVALIHPKNRDYFQI
                     LREKLNWGH"
BASE COUNT         7604 a         3738 c         2989 g         7219 t
ORIGIN      
        1 acaaattcag tgtattttta tatttttgat ttgcaagatt aaagaaatga taaatttaag
       61 cattatcctt caagttcgta taattttttt ctatccgttg aacttggtat atttaagtgt
      121 ttgcgatatt tagtaatagt gcgtcgtcct atatcgactt taaattcttt tttaatcaac
      181 tctaggattt tactatcact taaaggtttt gagcgatttt catttttaac caaatttgca
      241 acaaaatcct taacgcccac atttgaagtc tcgccctctt catcaagtgc aaaagcaaaa
      301 aaatcacgca aagggataag ccctctatca caacttaggt atttatttgc cactgctctt
      361 gaaatagttg aagcattgcg ctctaaatca agagctaagt ctttaaaagt cataggttta
      421 atatccttac ccatgaaaaa atcgtattgg tattctacta tcatgagtcc tattttataa
      481 agcgttgctt ttctcatcat taaagcatca actaaatttt ttgcttcttt gatgtagtga
      541 tttaagtatt cgtgagttaa accatcagtt tcaatggaaa tttcaggata ataatcatca
      601 ttgattttta ccttgatttc atcattttcc ctataaacaa agatatcggg tataataacg
      661 cgagaatctt caaaatactc caaaaaaggc ggtatgctaa aacgcttaaa aatcgctaat
      721 gcttccttat ataaaggctc tttagtgtaa ttttgtatat tttcaaaatc ctgaataagc
      781 attttacaaa aatcataaag ctctgcatca agttctatat tttctagcgc aaataaaaaa
      841 gcttctttat aatcttttgc tcccactccc acaggatcaa gaaatttaaa tcttgctctt
      901 atgcgctcta attcatttat atcataatct tttaaaattt cttcatcgta ttcaaaatat
      961 ccctcatgat ttaaacattc tacgattttg cctgcaagtt cttgagattt acttgtagga
     1021 aaaagagggg gtataatctg ttcattaaga agttcatata cgctttttgt agcaagacct
     1081 ttattatcca caaatgccga atttgcgttg cgtttataaa aagaatcaaa ataattttta
     1141 ttatgctcgt gtgtttgaat gggttcttga acgcttaaaa aagggttttc ttctgcgaat
     1201 ttgtctaaat tttcttttaa atcttctata tttgcttgta atataggcaa ccacgaacgc
     1261 agagtttgag aaatcttagt tttaggagcc tgggtagtct tttgccttaa catcaatcaa
     1321 ggagtttaaa ctccgctcct aaataatatt ttttaacatc tttattattt gctatttctt
     1381 cagcatttcc gcttgcaagt aaagagcctg atcttattac ataagctcta tcgcaaattg
     1441 ctaaagtttc gcgaacatta tgatcagtaa ttaaaattcc aatatcaagc tttttaagct
     1501 cattgataag actttgaatt tcagccactg caataggatc cacccccgca aaaggctcat
     1561 caagaagcaa aaatttaggc tcacacatca aagatcttgc aatttcacat cgtcttcttt
     1621 ctccaccgct taagcttaag ccttttctta agcgaatagg ttctatgctt aaaagctcga
     1681 gcatttgctc cactttttca tgtaaaattt tcttatcctt gtaaaaaatt tgagcagcta
     1741 aaagcaaatt atcttcaacg cttaaatcct taaaaatact gctttcttga ggtaagtaac
     1801 ctatgcctag ccttgctcgt ttatttaaag gctctttagt aatatccaaa ccatctaaaa
     1861 gcacttttcc actacttgga gatattagtc cacatatcat ataaaatgta gttgtttttc
     1921 ctgctccatt aggccctaaa agtcccacaa cctcaccact atttaattct aaggatatgc
     1981 cttggataat ctttgttttt ttaataattt tttctaaatt tacaatttct agtttactca
     2041 tgaattacat actttctttt atcatcttct acactgattt ttatttccaa gctaggaatt
     2101 ccaagtttta gcaaagcttt ttttaaattc tcatctcccc attcaaccaa atgtaaaccc
     2161 tcttcaaaaa aattctcaaa caaaccattt tttaaaagtc cttctaaacc ctcttgatat
     2221 atatcataat gataaataca tatatcttga ttttcatatt tttgcatgat agaaaaggtg
     2281 ggagaatcta ctttctcatc taaatttaaa aaactaaccc aagcttgcac taggcttgtt
     2341 ttaccactag ctaattctcc ttgtaataaa acaacacctt gttttggtaa agtttgaagc
     2401 atggtattga gttcattttt agctagaata aattctttca taacttcacc acatattcac
     2461 tttgtgcatt ttttggaata tttttagtag taggcaaagc taaaacctta tattcttgcg
     2521 tataatcagt aaaatgcaaa ctgataatat ctcctacctt aacctctttg ctcgccttta
     2581 ctatcactcc attaatcccc actacaccac ttctacacat atcttcagaa atagctcttc
     2641 ttttagtaat attaaccgca tttaaaaatt tatctactct cataatggaa ttttaccaaa
     2701 aaaattaaat ttttgaaacc cattttgctt tgactaactt ttcttcatca atttaaaaac
     2761 ttttctttaa tgaattttag atacaatttg acaattaaat caatattaac aaaggatact
     2821 ctatgaaaaa tgaagtaaaa aaagtcgttt tggcatattc tggcggactt gatacaagta
     2881 ttattttaaa atggcttcaa gatgaataca aatgcgaagt agtaactttt acagcagata
     2941 ttggacaggg cgaagagctc gaacctgcta gaaaaaaagc tctttcatta gggattaaag
     3001 aagaaaatgt tttcattaaa gatttaagag aagaatttgt taaagattat gtatttccta
     3061 tgtttagagc caatactatt tatgagggtg aatacttact tggaactagc atagcaagac
     3121 ctttgattgc aaaaactcaa gcacaaattg ccctgcaaac aagagctgat gcggtaagtc
     3181 atggggctac gggaaaagga aatgatcagg tgcgttttga attaggttat ttagccttta
     3241 atcctgactt aaaaatcatt gctccttggc gtgaatggga tttaaatagc cgcgaaaaac
     3301 tcttagctta tgcgcaaaaa catggtattg atatttctaa gaaaaaaggg aaatctcctt
     3361 attctatgga tgcaaatttg cttcatattt cttatgaagg acttgtttta gaagatcctg
     3421 cacacgcacc tgaagaggat atgtggagat ggagtaaaag tccaaaagaa gcaccgaatg
     3481 aaagtgagat tatagaactt gattttcaaa agggagattt agttgccatc aatggagagc
     3541 atttaagccc tgccgggctt ttaagcaagc ttaatgagct tggtgcaaaa catggcatag
     3601 gacgccttga tatagtagaa aatcgctatg taggaatgaa aagtcgtggc tgctatgaaa
     3661 caccaggagg aactatactc ttaaaagcac accgtgcaat tgaaagcatc acactagata
     3721 gagaagctgc gcatttaaaa gatgaactta tgccaaaata tgcaagtttg atttataatg
     3781 gttattggtt ctcgcctgaa agaatgatgc ttcaagctct aatcgacgaa tctcaaaaac
     3841 atgccaatgg tagagtaaaa cttgaacttt acaaaggtaa tgtaatggtt ataggccgag
     3901 aaagtgctaa tgatagttta tttaatgcag cttattgtac ctttgaagaa gatgaagtgt
     3961 ataatcaaaa agacgcagca ggttttatca aactgaatgc tttgcgtttt attattgcag
     4021 gaaaaaatgg aagaaaattt taaacaagga ttaaaaaaat gaaagtatta ttaatcaaag
     4081 atgttaaagc tcttggaaaa gcaggtgaaa tcaaagaagt aaaagatggc tatggtcaaa
     4141 attttctcat tgctaaaggc tttgctaagg cagcaacaaa cgaagtttta agaaaatatg
     4201 aaagtgacaa gaaaaaagaa gcagagaatt tacgcttcga acttgcaagc ttagaaaagc
     4261 taaaagaaga gcttagtaaa gttacacttg aaatttcaaa gcctgtagga gctaatggaa
     4321 gtttatttgg cggggtaact aaagatgaaa tcgcccatgc tttaaaagag caaacccata
     4381 tagaaatcga taaaaaaagc ttggagtgtg ataccctaaa aagccttggc actcacgaag
     4441 ttagcgttaa gttaggtcat gctatccacg caaaatttaa tataaacata aaggctgaat
     4501 aatgtttcat gcaacaacta ttttagctta caaaggcaaa aacaaatccg taatcggtgg
     4561 agatggccaa gtaagctttg gcaatactgt tttaaaaggc aatgcagtaa aaataagaaa
     4621 actcaacaac ggcaaagttt tagcaggttt tgcaggatca acagctgatg cttttaatct
     4681 ttttgatatg tttgaaaatc tacttcaaag ctctaagggt gatcttttaa aagcagcgat
     4741 tgatttttct aaagaatggc gaaaggataa atatctaaga aaactcgaag ctatgatgct
     4801 agtacttgat agaaatcata ttttcttact ttcaggcaca ggcgatgtag tcgagcctga
     4861 agatggacaa attgctgcca taggaagcgg tggaaattac gcgctttcag cagctagagc
     4921 tttggcaaaa catgcaaatt tggatgaaga agaactagtc aaatcaagtc ttcaaatcgc
     4981 gggtgaaatt tgcatttata ccaataccaa tataaaaact tatgtaattg aggatgaaaa
     5041 atgaatttaa ctcctaaaga aatcgttaaa tttttagatg attatgtcat aggacaaaaa
     5101 aaagctaaaa aaattatagc aatagcccta agaaaccgct accgaagaat gcagcttagc
     5161 cctgaactcc aagatgatat agtgccaaaa aatatcctta tgataggatc aacgggtgtg
     5221 ggtaagactg aaattgcaag gcgtttggct aagatgatgg gctttccttt tattaaaatc
     5281 gaagcgagta aatacacaga ggtaggcttt gtaggtcgtg atgtagaaag catggtaaga
     5341 gatcttgcaa atgcagcttt aaatttggta aaaaatgaac aaagagaaaa aaataaagat
     5401 aaaatcgatg aatttataga aaataaaatt ttagaaaaac ttcttccccc tttacctaaa
     5461 ggcatcagtg atgaaaaaca agaagaatat aaaaatagcc ttgaaaaaat gaggacaaaa
     5521 cttagaaatg gggatttaga tgaaagcgtg atagagatag aaatttcaca aagcatgttt
     5581 gatacaaatc ctaatttacc gcctgaaatg ggagcaatgc aagatatagt taaagttata
     5641 ggcgttggca gtaaaaaagt caaaaaagaa atgaaaatta aagatgctaa aaatgccctt
     5701 aaaaatgaag cagcagagaa gattttagat caagaaagca tcaaaagtga agctttaaaa
     5761 agagcggaaa atgaaggaat tatttttata gatgagattg ataaaattgc ggtttcaagt
     5821 ggaaattcaa atcgccaaga tccaagcaaa gagggtgttc aaagagattt acttcctata
     5881 gttgaaggct caagcgtaca aacaaagatc ggcactttaa aaaccgatca tatccttttt
     5941 atcgcagcag gagctttcca tcttagcaaa ccaagcgatt taatccctga acttcaaggt
     6001 cgttttcctt taagagtaga gctagatagt cttgatgata aagcacttta tgaaattcta
     6061 acacgcccta aaaattcact tttaaaacaa tatgaacagc ttttaaaaac tgagaattta
     6121 gaacttgaat ttgatgatga agcgattaaa gagattgcaa aaattgcttc taaagccaat
     6181 gaagaaatgc aagatatagg tgctagacgc ttgcatacag ttatagaaaa attgcttgaa
     6241 gatttaagct ttgaagcaga tgagtatgcg ggtaaaaaat tcgtagttga taaaaaaatg
     6301 gtggaagaaa aacttggaga tattatagaa aataaagatc ttgcaaggta tattttgtga
     6361 aaagtggctt tgttagcatc atagggcgta ccaatgcggg aaaaagcact ttaattaatt
     6421 ccttgctaga agaaaaaatc gccctagttt ctcacaaaca aaatgccaca aggcgtaaaa
     6481 tcaaagctat agtcatgaat ggtgaagatc agatcatctt tatagataca cctggtcttc
     6541 atgaaagcaa agcaacgctt aatcaatttc ttatccaaag cgctataaaa tctatgggtg
     6601 attgcgatgt tatcttgttt gttgctagta tttttgatag tgtaaaagat tatgaaaatt
     6661 tcctaagctt aaaccctaaa gttcctcata tcatcgttct taacaaagta gatctagctg
     6721 ataatggcac acttttaaaa aaactcaatg aatatgcaaa atttagcaag tattttaaag
     6781 ctatcttgcc ctattcttgc aagaaaaaaa actaccaaaa accactgcta aatgagttgt
     6841 gcaagctctt acctgaacat gagtattttt atgatagtga atttttaaca cctagttctc
     6901 aaaaagatat ttttagagaa tttatacttg aaagtattta tgaaaattta agcgaagaat
     6961 tgccttattc ttgtgaaatt atgataaaaa ataccaaaga aacatccaat ctttttatca
     7021 ttgatgcgca aattatcacc gatacaaatt cccataaagc catgcttata ggaaaagatg
     7081 gaacgacgct taaaagaata ggaaaagatg cgagatttaa aatttcaaaa ctcattcaaa
     7141 acaaagtact cttaaagctt tttgtcattg taaagaaaaa ttggcaaaaa gatgaaattt
     7201 ttcttaaaaa aattctaaat tatgaagaat aaagctcatt ttataagttt tgaaaatctt
     7261 atctacaaac aaaaaaatgg caattttgaa gaagatgacc tttttaaaga gctaacaaaa
     7321 gaatgcgatc ttcaaaatcc ttttgaatat caattggctt ttttaaaaca agatcaaatt
     7381 tatcattgtt ttttagcacg ggttgcaaaa ctacccaaaa ctcaattttg ttttccccaa
     7441 cccctcgtct ttcaaagctt atttttggaa aataaaatca aagaagagaa tttttgtatc
     7501 ttggaaataa aaccgcaaaa agtattttta tgtttttacg agcaaggtaa atttaaaact
     7561 tttaaaacac tcgatttttg tgataatata gaagaattta taaacaaaag ccgtatttta
     7621 gagcttttac aacactatga aagtaaaata ctgctaagca caaaagctca tgaaattttc
     7681 aatcttataa gtgcaaaagc aaaacttcct tttaaaatga ttcaagaaga taaaatcgca
     7741 ctttcaaaac atagcattca ccatcttgat aaaaatgcta attttatcaa acactataaa
     7801 aaatatcttc cttggtattt taaatttatt ttcttatttg ctctaagttt tataatcagt
     7861 attgtagttt tatcattaat tgactttgcg caataccaaa atgccaaaac aacacatata
     7921 caaaatgaaa tttcacaaaa taaaatctat gaaattcaag aaaaacaaag ccaaaaactt
     7981 aaggccaata tagaacaact tcaattagaa attcaaactc aaaatctttt attagaaaaa
     8041 tactctgaac aattatctaa aattacgcaa aattttaaag cggataaaaa tacaattttg
     8101 attttaacaa aggctattgc atggctaaat gatcattctt taagaatttc taatctcatg
     8161 atagataaaa cccttatcac tataaaattt agcaacgaag aggattttaa taaagcactt
     8221 caatttacaa gtccccaatt tagtcttatc tcacaagata aatccttgca cgaaatcact
     8281 ttaagagcat tacaatgaat caaattgagc aatttttaga aaatctaagt tctagggaga
     8341 aaattttaat atatcttaca accatactcc tagcaatatt actctctttt catttttacc
     8401 attcttactt aaaaagcttt tttaatcatg aatttttcat tcaaagtaat gatatggata
     8461 aaataatcac gacaaatcaa gatttaaacc aacaaataaa acaacttgaa aaagagcttg
     8521 tttttatcca agataaaata aaaagttatg aaaactatct taatgttttt aataaaaact
     8581 atgaaacata cattaaaaat ttgcaaaatc tagctcttga aaataatctt tggatctcta
     8641 atatagagtg gttgcaatca gaagaaaatt cttatcgtaa aatttcactc aatatttttg
     8701 gtgattttag tccaatactt tcctttatga aacaattaga aaattcagac ttgcactatc
     8761 aaatccacaa atttgaaatt gacaatacaa caagtttaaa tcttcattta aaactaacgc
     8821 tttcttttat ttccctagca aaactaaaat aaatactata gctttttatc tataaaggct
     8881 ataatgttat tttgataaaa agatttataa aataatgcaa atttaaaagg aaaaaaatga
     8941 atattcgtaa aataagagtt gaaaaaatca gacaatttat gataaaagaa aaacttgacg
     9001 cttatttgat actaagtgct gatccgcatt taaatgagta tttgcctagc ttttatcaaa
     9061 gcagagcttt tgtaagtggc tttaagggct ctgctggaag cttaatcatc acttctcaag
     9121 atgctttttt atggacagat ggaaggtatt ggattcaagc acaaaaggaa ttagaaggta
     9181 gtggcatact tttacaaaaa caagatgcaa ataatacctt tttaaaatgg ctaaaagaaa
     9241 atttaaatga ggagcaaaat ttaggtatag atttttcagt tttatcctta tctttacaaa
     9301 aagaaataca aaaaaactgc aaagccgagc taaaaaatat cgatttaatc agcctcattt
     9361 gggaagatcg tcctgcgtta cctaaaaata aggtttatga acatgaatta gaatattgct
     9421 cctattctag aaaagaaaaa ctattattag tgcgtgaaaa aatgaacaaa ctacaagcaa
     9481 aaaatcatct tatttccagt cttgatgata tagcatggat tactaattta agaggaaatg
     9541 atgtatgcta taatcctata tttttaagtc atttactaat cttggaagga aaggctttgc
     9601 tttttataga tagggaaaaa attgactttg aacttgaaaa aaaattaaat ttagatggaa
     9661 tttgtcttaa ggaatataat aaaattcaag atgagcttaa aaaactccaa aatacaaatt
     9721 tactcattga gccttcaaaa acaactactt tactcattga aattttagat aaaagcgttg
     9781 aaattttaga agagatcaat cctagcaccc atttaaaagc tatcaagaca gataaggaaa
     9841 tcgcacatat acaaaatgcc atgatagaag atggagtggc tttatgtaaa ttttttactt
     9901 ggcttgaaga aaatatcaaa aataatacac aaatcagcga gcttgatatc gatactaaaa
     9961 tcactgaatt tagatctcaa agtccttatt atattagcaa tagtttttct accatagcag
    10021 gatttaacgc taatgcagct ttaccgcatt ataaagccga aaaagaaagc ttttcttata
    10081 tccaaaaaaa tggattattg cttatagatt cgggtgggca atataaaaat ggcaccacgg
    10141 atattactag agttgtagct ataggtgagt taaacgggga acaaattcat gattataccc
    10201 tagttttaaa agcacacata gccatagcaa gtactatttt tccaaaagat attgccatgc
    10261 ctttgcttga tgctatcaca agagctcctt tgtggcaaga acagcttgat tatacacacg
    10321 gcactggtca tggggtgggt tattttttaa atgttcacga aggtccgcaa actctttctt
    10381 attttagccc tgtgcttgaa aaaacaaagg ctaaagaagg tatgttaact tctatagaac
    10441 ctggaattta tagaacagga aaatggggta ttaggcttga aaatttggtt gttaatgcaa
    10501 aaatagaaaa tcccaaaaac aaagattttg gtgaattttt atattttaaa cccttaacgc
    10561 tttgcccttt tgaaatcagt tgtatcgata aaaccttatt agatgccaaa gaaaaagcgt
    10621 ggattaatac ttatcataaa gaagtttatg aaaaactctc tcctaagctt catgataatt
    10681 taaaagcttt aaaatggctc aaagaaagaa ctaaagcggt ttaacaaaaa gaaatcttag
    10741 aaaaataata ttttttctag ttcttttttg ggctattagc tttattttct ggtttaaaat
    10801 atccaagttc tatcattttt tgatagatct ttgctgtagc aacacctgag cttatcgttc
    10861 ttccaccatg ttctactaaa acagtaacca cataacgcgg tttagaataa ggtgcataag
    10921 aagttaccca agcgtgcgat cttgtataat atctaagttg cttttcatca accctatttt
    10981 tatcagcttg agaaaaaccc accacctgtg cagttcctgt tttagcagca acttttactt
    11041 ctaaattgcg caaataatga taagaagtac ctccttgctc attagcaacc gcatacatcg
    11101 catctcttat ataggggagt tgactttttt caaaaagggt gaaaatttca ttactatctt
    11161 gcgctttatc ttctgtgata gtattgttat tttctacact ttttagaaag tgaggtacaa
    11221 cttcagcacc ttttgcaatt tgagctgtat atctagcaat ctgcataggt gtagccaaga
    11281 aatttccttg ccctatggaa gtatttaagg tatcaccttg aaaccaagct tgcttatatc
    11341 tttgcatttt ccattctcta cttggcaaaa ttcccacaaa ttcattaggt aaatccacac
    11401 cggttttagc tccaaagcct atgcgtgata aagtacgact tatttgatct atacccactt
    11461 gcaaacttcc atcgtaaaaa taaacatcac aacttgcttt tatcgcatgt tttaaatcta
    11521 cagctccatg ccctgctcta ttccaacaac gaaaaaatct cccgccaagc tctatactac
    11581 cattacaaaa aaattgggtt gagggattga tactttttga atttaaaaaa gacaaaccaa
    11641 cacccatttt aacaacagaa cctggaggat aatatccatt gataagttta tttgtaaaag
    11701 gatgatcaag attattagaa agctcgtccc attctttata agaaattccg gttacaaaag
    11761 gatttaaatc gtattcagga aagcttcctg ctgccaaaat agaaccatcg ctaatatcca
    11821 taataatagc agcacccgca ttaccctcaa aaagttgcgt taaaaagctt tgaagttcta
    11881 tatctatggt aagttctata tcattagaaa gtgccgaagt ataggagagt tgctccactt
    11941 cttgatttaa ggcattaacc ttataaatct tagttccttt ttctccttgc aaaacatcat
    12001 tataataacg ctctatccca ctctttcctg taaaattggt aagctttgaa atttcatttt
    12061 ctttaatatc ttgcaaatct gccttgccta catagcctat gatatgcgaa gctagttttc
    12121 caaaaggata ttttctttgc actgcaggat ctatgcgtat gttttgattt aaattgagtt
    12181 ctgaataatg cttcatcatt tcttgcgaag gtataaagtc tatgatttta ataaaatctt
    12241 gattataata agagtcattc ctcttataaa attcagcaag cttagtagtg tttaaatcag
    12301 gaaaaaatcc ttgaagttga tttaattctt tttctaatac acctctattt gcccttttta
    12361 gagttaaata aggcttaata gaaatactaa aacccaaatc attaatcgcc aaaggagtgc
    12421 cattgcgatc taaaatttgt ccgcgagttg ggactataaa ttcagttttt atagcatttt
    12481 gtttggcaag ttcttcataa tacacatttg attttatact taaataatac acacggctta
    12541 ataaaaatat aaaaaacaat aatataaagc caacaaccaa acgcattctc attagaactt
    12601 actcctatat aacatataag caaacaaaca ctcaaacata atcgatatca tatagccaaa
    12661 atttggcatt ttaaactctt gatctcctac atacgaaaaa atagcatcta aaataaaaat
    12721 aaaagcataa acacaaagga caagtatgat aggaataatt tttcctattt ttaaatttgt
    12781 tttaatccaa tctgcgcaag cataataaaa aataacaaag gcaagccaag aagaaaagag
    12841 aaaaaaatca taagttatat ctgtaaaaaa taaaaaaaat aaagaaaaat accacctaaa
    12901 atcaagtttg ttaaaggttt tttgcctttc ttctaaaaga aaatacatat aacaaaaaaa
    12961 tacaccgtaa agcaaaggca tataaagaaa aacagagcct aaaatttgat ataagataca
    13021 caaaaaacct aaaaaaacat aacttccatt cagttttacc ttataagcac tgatagtttt
    13081 tctcatttta taaacctaaa gtttgcttaa taacttcatg ttctaaatca tcaagaccca
    13141 ttttgtttaa attggatatt aaaatagcgt ctttgaaact atttttaagt ttagcttttt
    13201 cactttgatt gagtttatcg cattttgtaa acacttttaa tactctttga tcaggtttta
    13261 aaaaactttt taaatacttg tccaaattta aatcaatatc caaatttgta tgtcttgaat
    13321 caatcaaatg cacaaaaagt ttaatcgaac ttcttaattt taaaaactca tctaaatttt
    13381 tattccatat ttcttttaga ttttttgaaa ctttcgcata accaaaaccg ggtaaatcaa
    13441 taaaatggat actaaattta tcctcatcct tcttacataa aacttcaaaa atattaatca
    13501 attgcgtttt tccaggtgta gcagaactct tagcaagctt tttttgctta cataaagaat
    13561 taattaaaga acttttcccc acatttgatc ttcctaaaaa tgccacttca ctaaaatggg
    13621 atgcaaaatt tttatcaaat ttgtctaaag aggtgataaa tttagcactt attatcattt
    13681 ttgctctaaa tcaaatataa atcgagcagg ctttttatcc ttgctttcaa cacgataaac
    13741 attatttctc ttatctacta ttatcctatc accataaagc ttttgattac tttcaagttc
    13801 attaataaaa gcatttccat caatttcata aatatcttta gccacattat aaataaattt
    13861 atctccactc cccttataag tttttccctt taaaacaatt ttaaaattag cattttgcac
    13921 agcttcgtaa cgcataggtt tgcgattttt atctgtatat ataatcactt tttcagcagt
    13981 taaaatatca tcacctctta tgatttcaac attgccactg agtatgcttt cacccttatt
    14041 ttcatccgaa taaaaattta aggccttaac ctctatctgg ctagctaaag atatactgat
    14101 actcatcaaa aataaaatta tctttctaac cacgcattca ctccttgaac ttgtaaaatt
    14161 ttcttttcta catcgtagtt taaagtattt ccgttaataa tgcttccatt tatcaaagct
    14221 ttaaatcctg tattggtgct taaaatttta tttttaggcg catactctac tttatcagca
    14281 aaaatttttg tattatttaa acctatgtag gtaacattgc cttcaagcaa aaccttatcc
    14341 atctccttgc ctttaagttc caatttattt gcacttaaat taaaatccaa attaaaattg
    14401 acaaaattat caaactcatc tttgtctgta taacgcgccc aagattgcgc tttatagtat
    14461 gattttacat tgcttgcatt aagctcgtaa gcatttaaat cggaagcttc gatattttta
    14521 aaatttaaag cataggattt aatatttaaa gaataaggat cttgcaaact taaaattgta
    14581 aaagtaatag taaaaagagc gatcaaaatt ccaaaaattc ttatagccaa agcttatccc
    14641 attcctcttg catatcattt ttctttataa tatactctat catttgagcc acagctgctt
    14701 ttccgccttt tttatcaagt gtgatatcaa cttttaaatc cctatgtgca tccttaggct
    14761 taaaactaag gccaacattt tcaagtaaat ttttatcgtt aaaataatcc cctatagccg
    14821 cacattgaga aaaatctaaa ttcagctctt ctaaaatttt tttagcacaa gttaatttat
    14881 ctttaacacc ctgatgtaca atttctattt tcaaatcctt agcacgagca ctcacacaag
    14941 gacaatttct tccagtgata atagcaattt ttttacccag cttaatccaa gcttctatag
    15001 ctgcaccatc tttaacatca aattctttaa tcacacttcc attggaagtg tagatgattt
    15061 taccatctgt aagacaacca tctacatcta aaaatatcaa ttctatcatt gttttactca
    15121 cgcacaacaa aagcaccagc aaatgcacca cttgctgcaa aatctcttgc ctcttcttca
    15181 cttctaaatc ctgtcaagaa aacgcgactc aagccatcaa ccgaactttt gcgtatggtt
    15241 gaagaatagg ttctataagt tttatatcta gatgctatag tttgagctcc tgatggattt
    15301 ttaaacgctc caatttgcac cataaaattt ccaccttcat aaatttgacc attatttgca
    15361 attccgccac tagctccata atttatattt gaatgaacga cattattacc tgaattagcc
    15421 gaaccaaaac ctataacctc aagtctcaca ggagctgttc ctgcagcaat catatcgatt
    15481 tgacttgcag cacccttaga aagatctata attctgttat ttacaaaagg acccctatcg
    15541 ttaacacgca cggtaacttg gcggttattg tttaggttag ttacctttaa aatggtattc
    15601 ataggtaaag ttttgtgagc tgcggttaaa ccattttgat tataagtttc accattagaa
    15661 gtttttttac catgaaagcc cggtccatac caacttgcta taccatctgc tgtttcaccc
    15721 actgatacaa cagttggata ataagtttta ccatttatag tataaggttt catagtccct
    15781 ttacttccgg atcctgaagg actactatga aaatcattac ttggataata tatttgtgct
    15841 gaacctacgc tagaaaaaag acctccgaag catccgctag aaaaagttgc aactaaacta
    15901 gcggctaaca acttgggtaa agttttcttt agcttttgtt ttatagtttg catttttatt
    15961 ctccttaata ggtatgatta atttttgatt gatacttaag tgatttttgg caattttatt
    16021 taattctcga atttgctcta cgctagtatt atatttttta gcgattttat ataaagaatc
    16081 gcctgatttt acaacataaa ttttagtcat aggtatggtt gtatctactt ttgcaagctt
    16141 ttcaacttta aaatttttat caaaaaaagc tactttattt aaaggaatat acatataata
    16201 ccccttacct ggaggagtaa aaccatgttt aaaatgtgga ttatattttt taaaagttgc
    16261 caaatccata tttaaatttt tagccaaatc ttttaatgcg accgaagaag gagcatcaac
    16321 ctttgcaaaa tcgttattta aagcataatt aaccaaagct ccatctttat caagtaaaaa
    16381 atccctatca ttagccaaga aagctaaagt taaaattttg cgtataaaat ttctagtttc
    16441 taaagaaaga tattttttat caggatcgat taatactctt aaatcatcac ttcctgcttg
    16501 ctttattgct tgacgcaatt tcccatttcc acaattataa gctaaaagtg ctaaatacca
    16561 tttcccaaat tcttctttta agctttttag ataatgaacc gcggcatatg tagattttac
    16621 aggatcgcgt ctttcatcaa cataagcatc aatcctaagt cctaaatttc ttgccgtggg
    16681 ttgcataaat tgccacacac ctactgcctt agcattagaa acgctatgcg cttttaatcc
    16741 tgattctacc atagctagat ataaaatttc ttcaggaact tcttgttgtg ctagaatttt
    16801 tcttatcata ggagtaactt ttgagaaatt ttgtatacca tcaatcaaag tcggagcatg
    16861 ctttgatctt aaatcctgct gactttgcac aaaagctaaa tcactgataa aacttggatc
    16921 aatgtctaaa tttcttaaaa cactcatttg tctttcataa aattcaggag tggtagtttg
    16981 tgcaaaaaga aagttataaa ataaaataaa acaaaatata atttttttca tatttaacct
    17041 ttaaaaaata atctgtaaga attttccaag caaatcctta aaagctcttg ctttggtaaa
    17101 tcaagaattt cactcatttt attggctaca aattgagtca ataaaggctc attcctttta
    17161 ccacgataag gctctggagt aagataggga gcatcggttt ctagcaacaa tctatctttt
    17221 ggaatttgtg gtaaaatatt tactaaattc ttagcatttt taaatgttaa aacaccaccg
    17281 attccaaaat aaaatccatc atcactaaga cgcaataaat gttcgcttgc gttaaaacaa
    17341 tgcaaaaccc ctccaacaag atctttagaa tgctcgtgta aaatttcata agtatcgtta
    17401 tttgcttcgc gagaatggat aataacaggc tttttaaatt ctttagctag ctcaagttga
    17461 gctacaaaaa gccttttttg ctcctctttt tctttttctc tctcttttaa atcttcactt
    17521 ttaaaacgaa aataatcaag tccacattca cctacggcca cgcatttttc gtcttgcaaa
    17581 tatgctctta aaattttctc atcaaaacct tctagctcat aaggatgcac acctgcggca
    17641 aaaaatacat tttcatattt gctagcaagt tctgctgcat aaggtaaatc tttaatatct
    17701 gcacctggta tgatgatttt ttctatacca ttatcaaatg aatgctttaa aagctcatct
    17761 aaatcctctt taaatacttc actatctaaa tgacaatgag tatcgatgat ctttagacca
    17821 tctttaaatt caagatttaa gaacatactt ctactctatc tttaccatta gccttagctt
    17881 gcgaaagtgc ttttgaagct ttatcgacta agatttcaaa tttatctcca ctcttagcaa
    17941 aaactacccc tatagaagca gtaaaaaaga cttcatctaa attgactaaa attccaactt
    18001 tttttatatt gactcgaata cgagaaagaa ttttaatcgc cctttcttgc gaaatattct
    18061 ttaatactat gcaaattttt tcagcactat atctacccac aatatcacgc cctttggttt
    18121 cattaacaat ctcatcagcg caaattttaa taattttatc ccctacttca tagccgtatt
    18181 cttcgtttaa atttcttaaa ttatctatat ctaagaatgc aaaagcaaat tcttcttctt
    18241 tgcttacaat ttcatttaaa taatcttcaa cgcaactcaa taaagcattg gaatttttta
    18301 tcccggaaat aggatcaaga ttgttataaa tgcttaaaaa ctgcatattg gccatataat
    18361 gaagacattt atccaagcga caatttaaac tttctttact taagggtttt accaaatact
    18421 cattagctcc acttacaagc aaactagcct ctaaagcatc atctttatca cctaaaataa
    18481 ttacacccaa ttcatcatca ctaaaacgcg ctcttacttc gcttaaaagc tcacttccgc
    18541 taataacagg catgttcgca tcagcgataa taagcttcac atcgctattg tcatttaaat
    18601 aactcatcgc ttcctcacca tgagcagcgg ccaaaacatt aaattttctt tgtgtgagaa
    18661 ttttttttat ttcattacgt tcaggaagtt tacttagggc taagataacc ttagtcttag
    18721 cataacgctc aagcttgaca atagaatcta taatctgatc tatacaggta tcgctttctt
    18781 taaagatata atctaaaata tctttatcca taaatttatc tcttgtagct ttatcgttgc
    18841 tcgcggttaa tacaataaca ggccaatttt ttgccaaaac ataatccacc acttccccat
    18901 taggtgcatc aggcaagcat aaatctgcaa aagttaaaaa atactcatca ttgggcaatg
    18961 ccttaacttc agcaaggcta aaaacaatat caacttcatg atttaaagta gtttgtatct
    19021 ttttagctaa aagctttcca agcattttat tatcatcgat cagcaaaatt tttttattca
    19081 taatctataa aaataccttt tttaaaacta aatctttata ataaaattaa aaaaatccca
    19141 attctaacac aaacaaataa aaattccgct taagttttaa acaaagtttt agcaaattcc
    19201 aaagcttcat ctgtaatagt ctcgccactt atcattcttg ctaattcttt aattctatct
    19261 ttatctttaa gttttttaac cgtgctacaa gaagcatttt tttcaaccaa aaaatgatta
    19321 tgagcttttg aagaaagctg cggtaagtga gatatagcaa aaatttgata aaaagcagaa
    19381 agctcattta aaacattggc tatactcatc gcttctttgc cacttaaatt agcatcaatc
    19441 tcatctaaaa atattatccc tgtgcctgaa tttaaaattc tacactcagt cgcgataaaa
    19501 gcaagtctta aacgattaag ctcacctgaa cttaaatttt ttaaatttgc agcattgata
    19561 cttaatttga tctcatcttt tcccaaagaa gtgatttttg aagtatctac taattccaaa
    19621 cttacatttt tcatataaag gttttttaga taatcgttta aaaaatcctc taaagttttt
    19681 aaattttgca tacgagcttg agttaataac tgagtacttt gattgatttt cttttcgatt
    19741 ttttctagtt ttttttcaag ttcttttttt tcaaagctta aattatcata atgagcgagt
    19801 tcattttttt tattttccaa tacctctaaa gcattttcta tactctcata acgcttgatt
    19861 aaagaggata aatcctcgat tctattgagt acttcttcta tatcaaaatc caaatcttcg
    19921 attttttcat tttcagctat gatgcgaagt tcgtttaaac attcactaaa aaaactcgta
    19981 tctttttcgc taagatttaa agcatcaata actacttttt ctaattcaaa aatagcactt
    20041 gccttttccc aagctgcttc tattttgtct ttttttgata atttcttttt aagatttaaa
    20101 agctcttcgt attctccgac tttaggattg attttagaaa ttctttcaat ctgcgtgctt
    20161 gctaattctt taagctcttc aatccttttt tcttcttcta aaattgtagt caattcttct
    20221 gaaatttgaa gccattgttt ataatcatct ttaaaatgag ataaaaaatc ttcaaattca
    20281 ggatttttcg cacattctaa agcatctaag agatttaaaa atttctcatt gctaaattca
    20341 ttgatttctt tagcacttag atatttaata aattttttac tcaaatgaat caaacttttt
    20401 tttgaaatac tttgattatt gatgaaatat tttgtatttt tatcctttaa aagcttaaaa
    20461 acattttcct cttcaccttc tatgccgtat tcttctaaat ctatcttatc atcaagctca
    20521 atctcaacaa gctttgcctc actctcgctt aatgcaaaag cagacaatat acccttaaag
    20581 agtacagact ttcccgcccc gcttaaaccc gtaaagactg taagtccctg agaaatttca
    20641 agctcaacct ctttaaagcc aagattttct ttcatcaaaa ctctatttat catcaatgtc
    20701 cccaatttaa tttttctctt aatatttgaa aataatctcg atttttagga tgtataagtg
    20761 ccacactttt atcactaagc cccactttaa cgcttttaaa atcattcatt ttataatttt
    20821 cttgtccatc tatactaaaa atacaatctt ttgcgcctat ttcaagatca aagcccttag
    20881 gcagtactat agggcgttgg gttaaagaat gcgaacaaac gggcgtaagt ataaaagctt
    20941 gcgctaaagt ataaactata ggcccatttg cacttaaatt gtatgctgta gaacctgctg
    21001 gagtggctac tataagacca tctccaaaat attcgttaaa ttttttagct ttgcgaaata
    21061 cctctatatg cgccatagaa gcttttctat ccttgctgat cactacatca ttaaaagcaa
    21121 atttttgcat gatttgacca tcattacttt ctaaaataat actcaataaa aaaggatttt
    21181 ctaccctaaa ttctcccctg aaaaaagctt caaaaaaaac ttcagcttca tccaccttaa
    21241 aatctgttaa aaatcctaaa tgacccgcat gaattcctaa aaccgcttta ttatactcgc
    21301 aagcttttcg gcataaagaa atcaaagttc catcaccacc caaagaaatt acaaaatctg
    21361 aaagctcaaa caatgtatca aggtcgtatt ttggtaattt tacaatttca gaactttcct
    21421 tatagagcaa aagctccaca cctttttttt ctaaaatttc ttttagaatc aaaatttcct
    21481 tgtctaaatt tgaattagga cgcgccgcaa gtccgatttt tttaatgttt ttataatcta
    21541 ttttattttg
//
LOCUS       DBBXRO010000013        21354 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.013, whole genome shotgun sequence.
ACCESSION   DBBXRO010000013 DBBXRO010000000
VERSION     DBBXRO010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21354
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.013"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(220..1542)
                     /locus_tag="ACJFEZ_000378"
     CDS             complement(220..1542)
                     /locus_tag="ACJFEZ_000378"
                     /inference="COORDINATES: protein motif:HMM:NF017985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HGG0916521.1"
                     /translation="MRAIFVLIFLALSNLYSCALCATYTPNVDVNLDFNMSNEKIKQV
                     DISWEFSEEFFNVLLENYDFNYNDKFDPDELEIVKYTLLDYIKPKHFLTQFSFNGLEE
                     NINIKQFKNPKLQIKSPRLFFSYQVVLDMPIKDYNTFSIKIHDDGGFFNFNIKNQNSI
                     SLNSQNYIISSIDSSTASFEVYQGQLPQDVYIDNTPSPSPSKNFLEKLIEFNNTLFAH
                     IKDILRKEFDFKSFLILLVISFAYGVFHASAPGHAKMLTSSYFLTHKSTPLKILYFVS
                     RIGVIHILSAFLLVSVGVVLLEHLLKDVNNEAGFVLTKITSLFIIFIALFMISKKILS
                     DKKQCCCAHHKSNEWGIILSAALVPCPGVVLLIVFAYEFSFWYALSSAIFITLGMCLV
                     LFAFALGANQFYKSISHTKIRIFLEYFGLIVMFLFGLFLFINIKTNAL"
     gene            complement(1539..2408)
                     /locus_tag="ACJFEZ_000379"
     CDS             complement(1539..2408)
                     /locus_tag="ACJFEZ_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HGG0916522.1"
                     /translation="MLRILLLSVLCVFAFGKPIISVSIPPQAFFVEKIAKDSVEINIL
                     IPSNSDEHTMEFKPQALKKLEQSEIYFLADLELEKILEKKFKSVLKNVKIVNINEGIH
                     LLEGGHDHEHEHDHDHDRHHAEEHDEHNDPHVWLDPILVKKLAQNITQALVQSFPNNK
                     EFYEANLANFLKELDQMDAQIAEKLKNIKRNEFIVYHPSWAYLAKRYNLVQIPVEIDG
                     KEPKSKDLQNLIKLAKEKDIRVIFVQPGFPENSAKVLAKELNAQIVSINHLARNWDEE
                     LLKSIQALSSALQ"
     gene            2541..2885
                     /locus_tag="ACJFEZ_000380"
     CDS             2541..2885
                     /locus_tag="ACJFEZ_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HGG0916523.1"
                     /translation="MEALELLKKHDIAITDLRVELLQILSLAKTPLSYDHFDIKANKT
                     SFYRNMELFEKKGIVSKSELNRKSFYELADHAKAHFVCDKCHKISDVQMPKVKGTIKS
                     VLIKGICSDCEK"
     gene            complement(2940..3788)
                     /gene="lepB"
                     /locus_tag="ACJFEZ_000381"
     CDS             complement(2940..3788)
                     /gene="lepB"
                     /locus_tag="ACJFEZ_000381"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HGG0916524.1"
                     /translation="MNFLKKLYKFSQSWTGTVIIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFDKDGHLIKGQSPQRGDIVVFRNPKNEKE
                     HFVKRCVGVGGDRIVYANKTLYVRMHEGDEFMKEHYPDDLATLGGQIYVKEPYRQKGI
                     HYDLNKDIESDILRFLSVGKFAMSPTYFKELGNNIGFSGGNAYVFDVAEEEYFMVGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDQDKNVRWERIGRFVDTLENEEEYIHDHD
                     DEDKLS"
     gene            complement(3789..4646)
                     /gene="folD"
                     /locus_tag="ACJFEZ_000382"
     CDS             complement(3789..4646)
                     /gene="folD"
                     /locus_tag="ACJFEZ_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HGG0916525.1"
                     /translation="MTLLDGKALSAKIKQELKEKNKMLKENGVETCLAVILVGNDPAS
                     QTYVNSKAKACEECDIKSLVYRLDENTTQNELLALINTLNHDDSVHGILVQLPLPKHI
                     SKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYDINLEGLDS
                     VVIGASNIVGRPMATMLLNAGCTVSICHIKTKDLSAYTQKADLIIVAAGCVNLLRADM
                     VKEGAIIIDVGINRLENGKIVGDVDFEEVSKKASFITPVPGGVGPMTIAMLLENTVKS
                     AKNSLKSGI"
     gene            4724..5071
                     /locus_tag="ACJFEZ_000383"
     CDS             4724..5071
                     /locus_tag="ACJFEZ_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HGG0916526.1"
                     /translation="MKAVLIFLGAILNLFASDFITLKEYSKMLYENPRGISCKKCHGN
                     DGSEQTLGFYMKNGVKTAYKVPSIQNLSFEEFQNSLNQDKDAKSIMPNYSLTNDEIIT
                     LYNYIKQSKKEQK"
     gene            5068..6342
                     /gene="hemL"
                     /locus_tag="ACJFEZ_000384"
     CDS             5068..6342
                     /gene="hemL"
                     /locus_tag="ACJFEZ_000384"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HGG0916527.1"
                     /translation="MTNKKAFKIACSLIAGGVNSPVRAFANVQSEPRFISHGKGAHIF
                     DIEGNSYIDYMQSWGPLLFGHCDKDILKACNEALKKGSSFGAPTLLETQLAELVLEDF
                     PHLDKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLADVAKHTLVATYNDIESVKELFEKNKDIACVIIEPIAGNMGLVPGKQDFL
                     EELVKICKENDTLLIFDEVMSGYRASYLGSYGINHIQADIVTFGKVIGGGLPAAAFAA
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLSKAKKKKDLYTKLGKLAKRLTKGM
                     KELANERGVALQTCYIGSMFGYFFTQDPVYNYKDALKSDLKLFSKFHQNMLKNGIYLA
                     PSQFETGFICAKMNKEHIDKTLQSTHESFKKL"
     gene            6339..6644
                     /locus_tag="ACJFEZ_000385"
     CDS             6339..6644
                     /locus_tag="ACJFEZ_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HGG0916528.1"
                     /translation="MSENSNKRQKIIRKTIEAADGLSLGISMVVAILIGIGVGYLLKK
                     FTPYPWLFWLGVFWGVAAAILNVYKTYKSQVKSYGEFQQRDEFIKEKIRQKEQDNGK"
     gene            6634..7137
                     /locus_tag="ACJFEZ_000386"
     CDS             6634..7137
                     /locus_tag="ACJFEZ_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916529.1"
                     /translation="MENKKAFFIILCLIHVLFYCILVIFKWINLNIILSYEFAFFSIL
                     LIVFTSYSNYKKFILAQAKNHQKDFIYPSLFYIKKIEKLPRIVKFISIKDDLSLNFKD
                     RLRFFTLFFALFKLIAYGVLVAGFLFLHRQDKLDILSYICGISSLLVCVFIFMLYIRR
                     YESKKNH"
     gene            7115..8302
                     /locus_tag="ACJFEZ_000387"
     CDS             7115..8302
                     /locus_tag="ACJFEZ_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0916530.1"
                     /translation="MSPKKIIRSMTALFASMTFLFAGNALIVSSIGVILKENKESSLA
                     VGVLSSCFFIGALIGTIGAHKIISRIGHIRSFGLFGAVFGISAMLHTLSENLVFWAIL
                     RFFIGICYYGLLMVIESWLNEKSKNAVRSRILGFYEIVFYLAFGIGILIIALDLNKHN
                     IFILSAALILLSSLPLNLIKIKEPVLPAPSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFGAQEVSYFMFCGVLGGFLAQIVVGSISDKMGRKFAIITCSSIGFF
                     TMLIFAFFKLHLYMQYFLGILLGIGVFCLYALALARANDMLTNKNQGVELGRGVLFCY
                     SLGSLFGPLILGFLIQYFNTDGFVWFYIASLGFLILFAVNKPNILNKKFKKKPGNMVM
                     LDD"
     gene            8295..10589
                     /locus_tag="ACJFEZ_000388"
     CDS             8295..10589
                     /locus_tag="ACJFEZ_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HGG0916531.1"
                     /translation="MINTQLTSQIANAQKNDIKTDSGISKDKLNSKDNPKEALSQALK
                     QNLGLSKNASDEEVLTRFVQNETSAKLKELVNKLLDQINAQKNPDSPMLKQGKNLNLA
                     PNFANELKVLSTELAKSDTFTQVLDKLNQILKPASEIKNSNLAPLLKNSGIFFEAKLK
                     DALNEELLPKSFHSLISMIKSLSSEKIGAQIAQLANANLSPKDTLKELRNIIYSNKNE
                     NKQILNQSSFKALLNLSSKLENFKNYIAKNPSHTQEKILPIASKIAKELNAIKNDFFK
                     ALNRPENLMIKDTELLKQSAKAFEKLENTLKNILGDHFPKTPQKESILESLLNHKENI
                     KNENIKNENIKEDIKAQNEDINKNDEYTKDESPDSSIKQEESEEKSPQVPKKENSLDD
                     NDADIKQDIKKEENLESQEDFHPKEDQNLDSKTENRKDNTQDSKNKTEENQAENNTKN
                     STSNQDKIKDEKQEKIKENITKENPKFYETKTENKTSANTHNPNNTQNTQQLNNQTAQ
                     NIIKNQEFIKQNIVKNLAFSVENLDLEQVQDLSKSLSNLSRKVNESLKELEPHTQNAK
                     LNQAELKTLEHKLNLSIKDLAQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAV
                     YNQANRLLAQIELNQLMSLANDSINTYLPFSWEDLDDSKIMFRRGKKDKFFAQIKLEF
                     AKLGDLEILISLNNDKYIDINIMAENVEFRKTIYENAHELKRNINKAGLLSANFFVGD
                     IIRSKFDTRNAKNLDLEMGMDKKV"
     gene            10586..10867
                     /locus_tag="ACJFEZ_000389"
     CDS             10586..10867
                     /locus_tag="ACJFEZ_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HGG0916532.1"
                     /translation="MSKIKKSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(10864..11664)
                     /locus_tag="ACJFEZ_000390"
     CDS             complement(10864..11664)
                     /locus_tag="ACJFEZ_000390"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HGG0916533.1"
                     /translation="MSFSNESSRIFGLIAGVEFPSFIQKIINEKYVNYFKIDMSEFKA
                     PCEYESLNALFTRSLQIPREINEGFISPSDGKILECGSAFLADNALFAFSIKGHTYSI
                     EELLKDSFKKEELENGLDYVNIYLSPRDYHRYHSPCNMQILSATYTSGALYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFKFDTSIQTNAKFSHNFTRK
                     YENLELKKGEELGNFELGSTIVLIAQKGLLDIKLKAGQNVKFGEKIAD"
     gene            complement(11661..12785)
                     /locus_tag="ACJFEZ_000391"
     CDS             complement(11661..12785)
                     /locus_tag="ACJFEZ_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HGG0916534.1"
                     /translation="MIFFIFSFVTLLIFGLANIYIYKRLIKKIFIFKYLYKIFAFVFT
                     LLFLAQAIFLIFRRNEYLSDTWYEFLAALYAPTYCLFFITLGLDFIRLILMLMGKMHK
                     KYSLALRSVFDLTIISLAVVLIYTSINNAIRVPEIQSTDIYLAKLDRDLKIAMLTDIH
                     LGKNLHKDFLDRLIVEVNLQKPDMVVIVGDLVDTNPKELQNYISRLNDLKSTYGTFYA
                     LGNHEYYHGVDEVLNLLKEYTNMKILLNQNLDLGFINIAGLGDLAGLSKGLYAPDLAR
                     VKVDLNTSKASILLAHQPKTALLYNLSDFDLILSGHTHGGQIFPFMFLVKLHQGFIRG
                     LYDLGENTKLFVSSGAGFWGPSLRVFAPNEIVILNLKGEK"
     gene            12870..14165
                     /gene="gltX"
                     /locus_tag="ACJFEZ_000392"
     CDS             12870..14165
                     /gene="gltX"
                     /locus_tag="ACJFEZ_000392"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HGG0916535.1"
                     /translation="MYRFAPSPTGDMHIGNLRAALFNYICARQKNMDFILRIEDTDKA
                     RNITGKEEEIKEILHLFGISWQHYYVQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCQNLADIDVLKCEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVSCIIRGEDHVSNTPKQEHIRASLGYDK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLIMLGNKTPCEIFTL
                     EEAIEWFDISKISKAPARFDLKKLLQINREHIKMMADNELNTALNLNKDLAQLAKFYT
                     QEASTIKEIKEKLEAIFGAKDFNEFEPECKILKDLLSQIEPFESYEEFKSYLLEKSQL
                     KGKKFFMPLRIILTGNTHGPELNDLYPYIKNYINELARI"
     gene            14169..14450
                     /locus_tag="ACJFEZ_000393"
     CDS             14169..14450
                     /locus_tag="ACJFEZ_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HGG0916536.1"
                     /translation="MVVDSLIISIFQVIQIIINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSSPAYALVRKIPTRIGSIDLAPLIIVLALQFLSIFLGNILRSLL"
     gene            14444..16075
                     /locus_tag="ACJFEZ_000394"
     CDS             14444..16075
                     /locus_tag="ACJFEZ_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HGG0916537.1"
                     /translation="MVRKILILLSLSLVFLNASPYNLERLKQEENSIAKDYYIYRLLE
                     KKTISKKEAEGLNSHIFRYVGKIKSELEKIIPVKIFIDPKYAPCYNYTKANILDANQT
                     CQSVRLNSIAFIASLDNASRSALAQKLSHQRDDLANLLLAFNTPEPMAYIIQKEDVNG
                     FFRLRNYSKKYDFDLNASFANKLPTHVGFKNFAQNIIIKKENPKFRASMLKIDPTFVN
                     EDSAFYLGINALAYNKEELAYNFFAKAAQTFKMQSNKDNAIFWMWMIKKDDKDLQTLA
                     KSSSLNIYSLYAKELTNSEFLKIEVIDSTNKKKNNFNMQDPFAWQKLNKQIREANASE
                     LDRLAKEFDSKETLPIYAYILERKSKFKNHYFIMPYYEYIKNYSAPRQALILAIARQE
                     SRFIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFEPKNAYYFGNHHLNY
                     LEKHLKSPLFIAYAYNGGIGFTNRMLARNDMFKQGKFEPFLSMEFVPYQESRIYGKKV
                     LANYIVYRRLLNDSIKISDIFENLTQNKAGDLNKS"
     gene            complement(15972..16457)
                     /locus_tag="ACJFEZ_000395"
     CDS             complement(15972..16457)
                     /locus_tag="ACJFEZ_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916538.1"
                     /translation="MKIYTLALAMLVFSACSLKEEAVVDANLKTQTLMFAQKYKITQD
                     KMNAIITLSYLNPILDKASEEDIFALTITPDTLKIENLEIFINERKANIEELDEEFFK
                     YLIQNRYTRYLKITLPSVKKEDKITAKICLNHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            16550..17041
                     /gene="mobB"
                     /locus_tag="ACJFEZ_000396"
     CDS             16550..17041
                     /gene="mobB"
                     /locus_tag="ACJFEZ_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HGG0916539.1"
                     /translation="MKKSIIAFSGPSNSGKTTLITKIANEFIKQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            17043..17885
                     /locus_tag="ACJFEZ_000397"
     CDS             17043..17885
                     /locus_tag="ACJFEZ_000397"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HGG0916540.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILNINENAKFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLKAALYSMYGARLELVICKDQPKLYRLDKNNEFVFVKDLQMQEKGKIN
                     ATGGTQKFWEEKHAKFIKKLFDEGYRLRYSGAMVSDINQILLKGGGLFSYPATSDAPK
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNHSLLELDFDEIHATTPCFFGSKYEISELLK
                     AYNE"
     gene            17878..18075
                     /locus_tag="ACJFEZ_000398"
     CDS             17878..18075
                     /locus_tag="ACJFEZ_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916541.1"
                     /translation="MSEIRDEFEQDLDKKKEILSSCQSSKGLKSCYNCDEIFNCSTRK
                     DYVDAVYNSMSKGKTEGGFDF"
     gene            18085..19971
                     /gene="metG"
                     /locus_tag="ACJFEZ_000399"
     CDS             18085..19971
                     /gene="metG"
                     /locus_tag="ACJFEZ_000399"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HGG0916542.1"
                     /translation="MRYLTTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRLLT
                     GTDEHGQKIEQAAKIRNSTPKEYADKISSEFKKLWDEFEITYDIYARTTDTRHVEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFAKSQLINECGCPDCGKDTSLLKEESYFFK
                     LSKYQDKILQWYDKEDPILPKNKKNELINFVQSGLKDLSITRTSFDWGIEIPEEIKDD
                     KHIIYVWLDALFIYISSLDYQSQGENAKFWPAHIHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGLEAFRYFLLREVPFGNDGDFS
                     ESVLINRINTELGNEFGNLLNRIIGMSIKYNQGNISQEGVLEFYKNELDTAKEHLDNA
                     INFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKANKIKEANALIGLCANILAKT
                     SLLLSPTLPKSCQKVGLALNFEISPTNYQKLILQNELLDFKASACEALFPKIEKPLLS
                     QEEKQEVKKEEKPKIKIDDFAKIEIKVAKVIDCQNIEGSEKLLKFKLELDNKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLISPEQLVENG
                     SLVG"
     gene            19973..20920
                     /locus_tag="ACJFEZ_000400"
     CDS             19973..20920
                     /locus_tag="ACJFEZ_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916543.1"
                     /translation="MNISNLSELIHANMLNEGSVLSVTGFALSLHELKNGFAFFSNNK
                     KEIIQAVQKGAFAIISEHELCIDDKEIYYLQVDNLESALIKLLRFLCEEKECEFIALQ
                     AYELGICKAFSLNILKGNIFVDFNSLIKAKKGEIFCFSDENYLLQLCASLTILKEANF
                     TLLSRSSFFFTTLVCDNLYFKNLNLPFIYAKIFAKIMFYLKEKNTKMSFDFNKIDDFK
                     IYFMDENFNISEFGSSARAFIIVSNQNTFDFWQENFKNIKGFKTALHNSLFCDFSYDK
                     LLDLKNLKNFKYCLLLEDYEAFEREFKNEENQSPSLFLN"
     gene            complement(20893..>21354)
                     /locus_tag="ACJFEZ_000401"
     CDS             complement(20893..>21354)
                     /locus_tag="ACJFEZ_000401"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HGG0916544.1"
                     /translation="YKIPFCYLSLHSNGDFLTKIDFCDRLDIENTCPLLEFAKEELRL
                     YFAKKLQKFQTPLWIQGGDFEQKVYKELINIPYAKLVTYKEIAININHPKAFRAVGNA
                     NSKNLIPIFIPCHRVIASNGLGGYNGGLAIKRFLLECEGVDLSQFKNKLGD"
BASE COUNT         7801 a         3369 c         3194 g         6990 t
ORIGIN      
        1 actaaagaaa ataagcttag aattatcatt gtgattttca tttaatgctc ctttgtttaa
       61 aataagcata ttataaaata atttttatat gaattgattt taaacactaa gcattttttc
      121 atagtttata aactacatgc ttgcttgtta attatgtatg atttgaaaaa tctagattta
      181 gataaaaaat attttaccca ttttatctag aaatttcttt tatagtgcat ttgtttttat
      241 attgataaac aaaaacaaac caaataaaaa cataacaata agtccaaaat attctaaaaa
      301 gattcttatt tttgtatgtg aaatgctttt ataaaattga tttgctccta atgcaaaagc
      361 aaacaatact aaacacattc ccaaagtgat aaaaatagca gagcttaacg cataccaaaa
      421 actaaactca taggcaaata ctataagtaa aacaaccccg ggacaaggca ctaaagcagc
      481 actaagtata ataccccatt cattgctttt atgatgagca cagcagcatt gctttttatc
      541 gcttaatatc tttttactaa tcataaataa agcaataaaa ataataaaca aactcgtaat
      601 cttagtcaat acaaagccag cttcattatt gacatctttt aataaatgct caagtaaaac
      661 cactccaaca cttaccaata aaaacgcact caatatgtga ataactccta tcctagatac
      721 aaagtacaat atctttaagg gtgtactttt atgggttaaa aaatacgaac ttgtcagcat
      781 tttagcatga cctggagcac tagcatgaaa aacaccatac gcaaaagaaa tcactaataa
      841 aatcaaaaag gatttaaaat caaattcttt tcttaatata tctttaatat gggcaaaaag
      901 tgtattatta aattcaatca atttttctaa aaaatttttt gaaggagaag gacttggagt
      961 attatctata tatacatctt gaggtaattg cccttgatat acttcaaaag atgcagtgct
     1021 tgaatcaata ctagaaatga tataattttg cgaatttagg cttatagaat tttgattttt
     1081 tatattaaaa ttaaaaaatc ctccatcatc gtgaattttt atactaaagg tgttataatc
     1141 tttaatgggc atatctaaaa caacttgata actaaagaac aaacgaggag actttatctg
     1201 caatttagga tttttaaatt gcttgatatt tatattttct tccaagccat taaagctaaa
     1261 ttgagttaaa aaatgcttag gttttatgta gtctaaaagt gtgtatttta caatttcaag
     1321 ttcatcagga tcaaatttat cattataatt aaagtcataa ttttcaagca aaacattaaa
     1381 aaattcttct gaaaattccc agcttatatc tacttgtttg attttttcat tgctcatatt
     1441 aaaatctaaa tttacatcta catttggggt gtaagttgcg cacaaggcgc aagaatataa
     1501 gttgcttaaa gctagaaata ttaaaacaaa aatcgctctc attgcaaggc cgaacttaaa
     1561 gcttggatac tttttagaag ctcctcatcc caatttctag ccaaatgatt aatagaaaca
     1621 atttgagcat ttaattcttt agctaacact tttgcagaat tttctggaaa gccaggctga
     1681 acaaagataa cgcgtatatc tttttctttt gcaagcttga taagattttg caaatcttta
     1741 cttttaggct ctttaccatc aatttctaca ggaatttgca caagattgta tcttttagcc
     1801 aaataagccc aacttggatg ataaactata aattcatttc ttttaatatt tttaagtttc
     1861 tctgcgattt gagcatccat ttgatcaagc tcttttaaaa agttagccaa atttgcttca
     1921 taaaattctt tattgtttgg aaaactttgc actaaagctt gggtaatatt ttgtgccaat
     1981 tttttaacca aaataggatc aagccaaaca tgagggtcat tatgctcatc atgctcttct
     2041 gcgtgatgtc tatcgtgatc atgatcgtgt tcatgctcat gatcatgccc tccttcaaga
     2101 agatgaatac cttcattaat attaacaatt tttacatttt ttaatacact tttaaatttt
     2161 ttttccaaaa ttttttcaag ctctaaatct gctaagaaat aaatttcact ttgctctaat
     2221 tttttcaatg cttgaggctt aaactccata gtatgctcat ctgaatttga tggtatgagt
     2281 atatttattt caacactgtc tttagctatt ttttccacaa aaaaagcttg aggtggaatg
     2341 ctgacactaa ttatgggctt tccaaaagca aaaacacata atacacttaa taataaaatt
     2401 ctcaacatag attttcctta taataaaata ttttgaaatt atacaaaatg caacttagtt
     2461 gcaacttaaa cataaagttg caaacataaa gcttttttat gctacaataa aatataagtt
     2521 atattttaaa ggtaaatctt atggaagctc ttgaattatt aaaaaaacac gatatagcta
     2581 taacagacct acgcgtagaa ttactacaaa ttttatccct tgcaaagact ccattaagtt
     2641 acgatcattt tgatatcaaa gccaataaaa ccagttttta tcgtaatatg gaactttttg
     2701 aaaaaaaggg cattgttagt aaaagtgagt taaaccgcaa aagtttttat gaattagcag
     2761 atcacgctaa ggcacatttt gtttgtgata aatgccataa aattagcgat gttcaaatgc
     2821 caaaagtaaa aggtacgatt aaaagtgtgc ttataaaagg catttgtagt gattgtgaaa
     2881 aataaaataa gccaaattta agaaagtgat tttatttact gcttatacag aaaacaaaat
     2941 caactcaatt tatcctcatc atcatgatca tgaatgtatt cttcttcatt ttccaaagta
     3001 tcaacaaaac gccctatcct ttcccagcga acatttttat cttgatccca tgaaaaataa
     3061 acaaaccaag gctttcctac tatcaaacga taaggaacag agccccaaaa acggctgtca
     3121 taagaataat ctctattgtc ccctaccata aaatattctt cttcggccac atcaaaaaca
     3181 taggcattac caccactaaa gcctatatta tttccaagtt ctttaaaata agttggcgac
     3241 atagcaaatt tgcccacact aagaaaacgc aaaatatcac tttctatatc tttgtttaaa
     3301 tcataatgaa tccctttttg cctataaggc tctttaacat aaatttgccc tccaagggtt
     3361 gccaaatcat caggataatg ttctttcata aattcatcac cctcatgcat tcttacataa
     3421 agtgttttat tggcataaac gattctatct ccgcccactc ctacacagcg ttttacaaaa
     3481 tgctcttttt catttttagg gtttctaaaa accactatat cgcctctttg ggggctttgc
     3541 cctttgatta aatgtccatc tttatcaaaa tccggtaaaa ctggaatttc aagccacgga
     3601 atatgtggag ttggaattcc atagctgaat tttttaacaa ataaaaaatc acctacaagc
     3661 aaggtatttt tcatcgaacc tgaaggtata acaaaggctt gtataaagaa aaagattact
     3721 aaaagaacga tgataaccgt tcctgtccat gattgtgaaa atttataaag tttttttaaa
     3781 aaattcattt atattcctga ttttaaacta tttttagctg attttactgt gttttccaaa
     3841 agcatcgcta tagtcatagg gcctacaccg cctggaacag gggttataaa actggctttt
     3901 tttgaaacct cttcaaaatc cacatcgcct actattttgc cattttcaag gcgattaatt
     3961 cctacatcaa ttataatagc accctcttta accatatctg cacgaagcaa attaacacat
     4021 cctgctgcta ctataatcaa atctgctttt tgagtataag cgctcaaatc ttttgttttt
     4081 atatgacaaa tacttaccgt acaacccgca tttaaaagca tggtagccat aggacgacct
     4141 actatatttg aagcaccgat tacaacgcta tctagtcctt caagattgat atcataagct
     4201 tttaaaagct tcataacgcc aagtggagtg caaggtaaaa atccactttc caaacctaaa
     4261 tttaaataac ccacattaat aggatgaaag ccatccacat ccttactact gatgatactt
     4321 tctaaaatta aatccttgct gatatgtttt ggtaaaggaa gctgaactaa aattccgtgg
     4381 acactatcat cgtgatttaa ggtattaata agagctaaaa gctcattttg agttgtattt
     4441 tcatccaaac gataaaccaa agattttata tcacattctt cgcaagcttt agctttagaa
     4501 ttgacataag tttgacttgc tggatcatta cctactaaaa ttaccgcaag gcaagtttct
     4561 actccatttt cttttaacat tttgtttttt tctttaagtt cttgtttaat cttggcgctt
     4621 aaagctttac catcaagcaa agtcattctt ttcctttata aatttatcac ttttttaaag
     4681 taaaaattgt atcatattaa aacttcatta acaaggtgaa attttgaaag ctgttttaat
     4741 atttctagga gccattttaa atctttttgc ttctgatttc ataacactta aagagtattc
     4801 gaaaatgctc tatgaaaacc caaggggtat tagttgtaaa aaatgccatg gtaacgatgg
     4861 aagcgaacaa actctaggtt tttatatgaa aaatggagtt aaaacagcct ataaagtccc
     4921 aagtattcaa aatcttagtt ttgaagaatt tcaaaattct cttaatcaag acaaagatgc
     4981 aaaatcgatc atgccaaatt actcattaac caatgatgaa attataacct tatataatta
     5041 catcaagcaa tctaaaaagg agcaaaaatg acaaacaaaa aagcttttaa aatagcttgc
     5101 agtcttattg caggaggtgt aaattctcct gttcgtgctt ttgccaatgt gcaaagtgag
     5161 cctagattta tatcccatgg aaagggagct catatttttg atatagaagg caatagctat
     5221 attgattata tgcaaagttg gggacctttg ctttttgggc attgcgataa agatatatta
     5281 aaagcttgca atgaggcttt aaaaaagggt tcaagctttg gtgcgccgac tttgctagaa
     5341 acacaactgg ccgagcttgt tttagaagac tttccgcatt tagataaaat tcgctttgta
     5401 agcagtggta cagaagcgac catgagtgcc atacgccttg ctcgcggttt taccaaaaaa
     5461 gataaaattc taaaatttga aggttgctat cacgggcatt cagattcttt acttgtaagt
     5521 gctggaagtg gcgctgctac ttttaattca ccgagctctt taggggtttt agcagatgta
     5581 gcaaagcata ctctagtagc aacttataac gatatagaaa gcgtaaaaga gctttttgag
     5641 aaaaataaag acattgcttg tgttattatc gaacctattg caggaaatat gggattagtt
     5701 cctggcaagc aagatttctt agaagagctt gtcaaaattt gcaaagaaaa cgataccttg
     5761 ctcatctttg atgaagtgat gagtggatac agagcttcat atcttggctc ttatggtatc
     5821 aatcacatac aagcagatat cgttactttt ggcaaggtta taggtggagg cttacctgca
     5881 gcagcttttg cagctagagc agaaatcatg gatattttaa gtccattagg aggagtttat
     5941 caagcaggaa cactcagtgg aaatcctttg gcaatggctg caggaattgc tagtttatct
     6001 aaagccaaaa agaaaaaaga tctttatact aaacttggaa aattagccaa aaggcttact
     6061 aagggaatga aagaacttgc aaatgaaaga ggtgttgctt tacaaacttg ctatataggc
     6121 tctatgtttg gatatttttt cacacaagat ccagtgtata attataaaga tgctctaaaa
     6181 tctgatctta aactcttttc taaatttcat caaaatatgc ttaaaaatgg aatttatcta
     6241 gctccttctc aatttgaaac aggatttatc tgcgctaaaa tgaataaaga gcatatcgat
     6301 aaaaccctac aaagtacaca tgaaagcttt aagaaactat gagtgagaat tctaataaaa
     6361 gacaaaaaat cattcgcaag actatagaag ccgcagatgg gcttagtctt ggaatttcca
     6421 tggtcgttgc tattttaatc gggattggcg tggggtattt gttaaaaaaa tttacaccct
     6481 acccttggct tttttggctg ggtgtatttt ggggtgttgc agcagcaata cttaatgttt
     6541 ataaaaccta taaatcacaa gttaaaagct atggagaatt tcaacaaaga gacgagttta
     6601 taaaagagaa aattcgccaa aaagaacaag ataatggaaa ataaaaaagc tttttttatt
     6661 atcttgtgct taattcacgt cttgttttat tgcattcttg ttatttttaa atggataaat
     6721 ttaaatataa ttttaagcta tgaatttgct ttttttagca ttttattgat cgtttttact
     6781 tcttattcta attataagaa atttatccta gctcaagcaa aaaaccatca aaaagatttc
     6841 atttatccga gtttatttta tataaaaaag atagaaaagt tacctagaat tgttaaattt
     6901 atttccatta aagacgattt atctctaaat tttaaagata ggttacgctt ttttactttg
     6961 ttttttgcct tatttaaatt gatagcctat ggggttttag ttgcgggatt tttattttta
     7021 catcgtcaag ataaattaga tattttatcc tatatatgtg gaatttcatc cttgctagta
     7081 tgtgttttta tttttatgct gtatataaga agatatgagt ccaaaaaaaa tcattagatc
     7141 catgacagca ctttttgcca gtatgacatt tttgtttgca ggcaatgcct tgatcgtaag
     7201 ctccataggt gttattttaa aagaaaataa agaaagctcc ttggctgttg gagtgctaag
     7261 ctcttgcttt tttataggag cccttatagg caccatcgga gcacataaaa tcatctctcg
     7321 cataggacat ataagatctt ttggtttatt tggtgcggtg tttggaattt ctgctatgct
     7381 tcataccctt agtgaaaatc ttgttttttg ggcgatttta agatttttta taggaatttg
     7441 ctattatggg cttttaatgg taatagaatc atggcttaat gaaaaaagca aaaacgccgt
     7501 tcgttctaga attttaggtt tttatgaaat cgtattttat cttgcgtttg gtattgggat
     7561 tttgattatt gctttagatt taaacaagca taatatattt attttaagtg cagcacttat
     7621 cttgctttca tcattgcctt taaatttaat caagatcaaa gaacccgtct tgcccgcacc
     7681 aagtcctatt tctataccta aaatttttga tatagctcct ttagctattg ttacaagttt
     7741 tatagctgga atgcttatta atgggttttt ttctatggcg tctttgttta tacttttaca
     7801 aggctttgga gctcaagaag tttcttattt tatgttttgt ggggtgctgg gtggattttt
     7861 agcccaaatt gtagtaggaa gtatttctga taaaatggga cgaaaattcg caatcatcac
     7921 ttgctcaagc ataggttttt ttaccatgct tatctttgct ttttttaaac ttcatttgta
     7981 tatgcaatat tttttaggca ttttacttgg tataggagtt ttttgtcttt atgctctagc
     8041 tcttgcaagg gctaatgata tgctaacaaa caaaaatcaa ggcgttgaac tgggtcgtgg
     8101 ggttttattt tgttattctt taggctcttt gtttggtcct ttaattttag gatttttaat
     8161 acaatatttt aatacagatg gttttgtttg gttttatata gcctctcttg gatttcttat
     8221 cctttttgca gttaataaac ccaatatttt aaataaaaaa tttaagaaaa aaccaggaaa
     8281 tatggtgatg cttgatgatt aatactcaac ttacaagcca aattgcaaat gcacaaaaaa
     8341 atgacataaa aaccgatagt gggataagta aagataaatt aaattctaaa gataatccta
     8401 aagaagcact ttctcaagcc ttaaaacaaa atttgggact aagtaaaaat gcaagcgatg
     8461 aagaagtttt aactcgtttt gttcaaaatg aaacaagcgc aaaattaaaa gaacttgtca
     8521 ataagctctt agatcaaatc aatgcacaaa aaaatcctga ctcacctatg cttaaacaag
     8581 gaaaaaatct aaatttagct cctaattttg ccaatgaatt aaaagtctta agcacagaac
     8641 ttgcaaaaag cgataccttt actcaagttt tggataaatt aaaccaaatt ttaaaacccg
     8701 caagtgaaat aaaaaatagt aatttagcgc cattgttaaa aaattcgggt atcttttttg
     8761 aagcgaaatt aaaagacgct ttaaacgagg aattattacc caaaagtttt cattctctta
     8821 taagcatgat taaaagtctt agcagtgaaa agattggtgc gcaaattgca cagcttgcaa
     8881 atgcaaattt aagtcctaaa gacaccttaa aagaattaag aaatattatt tattctaata
     8941 aaaatgaaaa taagcaaatt ttaaatcaaa gctcttttaa agctctttta aatttaagct
     9001 caaaactaga gaattttaaa aactatatcg ctaaaaatcc aagccatact caagaaaaaa
     9061 ttcttcctat agctagtaaa attgcaaaag aattaaatgc gataaaaaat gattttttta
     9121 aagctttaaa cagaccagaa aatttaatga taaaagatac cgagctttta aaacaaagtg
     9181 caaaagcttt tgaaaaatta gaaaatacct taaaaaatat cctaggtgat cattttccta
     9241 aaacacccca aaaagaaagt attttagaaa gtcttttaaa tcataaagaa aacattaaaa
     9301 atgaaaatat taaaaacgaa aatatcaaag aagatataaa agctcaaaac gaagacatta
     9361 acaagaatga tgaatatacc aaagatgaaa gccccgactc tagcatcaaa caagaagaaa
     9421 gtgaagaaaa atcccctcaa gtaccaaaaa aagaaaattc attagatgat aatgatgcgg
     9481 atataaaaca agatatcaaa aaagaagaaa atttagaatc tcaagaagat tttcatccaa
     9541 aagaggatca aaatttggat tctaaaacgg aaaatcgtaa agacaatact caagattcaa
     9601 aaaataaaac agaagaaaat caagcagaaa acaatacaaa aaattccacc tcaaaccagg
     9661 ataaaatcaa agatgaaaaa caagaaaaaa ttaaagaaaa tataaccaaa gaaaatccta
     9721 aattttacga aacaaaaaca gaaaacaaaa cttcagcaaa cactcataat ccaaacaata
     9781 ctcaaaatac acaacaatta aacaatcaaa ccgcccaaaa tatcataaaa aatcaagaat
     9841 ttataaaaca aaatattgta aagaatttgg cctttagcgt agaaaatttg gacttagagc
     9901 aagtgcagga tttaagcaaa agcttaagca atctttcaag aaaagtcaat gaaagcctaa
     9961 aagaactcga accccatact caaaatgcca aactcaatca agcagaatta aaaaccttag
    10021 aacataaatt aaatttatcc ataaaagatt tagcacaaat taaaccaaaa accgagcagg
    10081 atatagccga atctttacat catgatgtaa aatcaaccct tttgcaaatt tcaaatttag
    10141 ccaaaaatga aggtaacgaa gctgtataca atcaagccaa tcgtctttta gcgcaaattg
    10201 aactcaatca actcatgtct ttagctaatg attctatcaa tacctatctg cccttttctt
    10261 gggaggattt agatgattct aagatcatgt ttaggcgcgg aaaaaaggat aaattttttg
    10321 ctcaaatcaa acttgaattt gccaagcttg gcgatttgga aattcttatc tctttaaaca
    10381 atgataaata catagatatt aatatcatgg cagaaaatgt tgaatttaga aaaaccatct
    10441 atgaaaatgc tcacgaactt aaaagaaata tcaataaagc gggactttta agtgcaaatt
    10501 tctttgtagg agatatcata agaagcaaat ttgatacaag aaatgccaaa aatttagatc
    10561 ttgaaatggg tatggataaa aaagtatgag caagataaaa aaatcaatca aaaaagctgt
    10621 cgctctaggc tatcaaaaag aaaaaaattc agcacctaaa gttcttgcta gcggcaaagg
    10681 agaaagtgct gctaaaatta tctctttagc taaagaacac ggagttccta tcaaagaaga
    10741 tgaggatttg atagaaattt taagtaaatt agacttagga gatgaaattc cgcccaatat
    10801 gtataaagct gtggctgaag tttttgcttt tatttatcaa atggcaaata aaacacctaa
    10861 aaattaatct gctatttttt ctccaaattt aacattctgc cctgctttaa gcttgatatc
    10921 taaaagtcct ttttgagcaa ttaaaactat agtagaacct aattcaaaat ttcccaattc
    10981 ttcacctttt ttaagctcta gattttcata ttttctagta aaattatgag aaaattttgc
    11041 attagtttgt atgcttgtat caaatttaaa acgcattttt cctacatttt gagctcctac
    11101 aaacacaagc caaaaaatac ccttttcatt ttgacatttt aaactcactc tttcattttt
    11161 tacatataaa ttactaatac gctctaaatg cttttcattt acactataaa gggcgccact
    11221 tgtgtaagtt gcacttaaaa tttgcatatt gcaaggacta tgatagcggt gataatctct
    11281 tggagaaaga tagatattaa cataatcaag cccattttcc aattcttctt ttttaaaact
    11341 atcctttaaa agctcttcta tgctataagt atgcccttta atcgaaaaag caaagagtgc
    11401 attatctgct aaaaaagcac ttccgcactc taaaattttc ccatcacttg gacttataaa
    11461 accctcattt atctctcttg gaatttgcaa agatcttgta aaaagtgcat ttaagctttc
    11521 atattcacaa ggagctttaa attcgctcat atcgatctta aaataattga catatttttc
    11581 attgattatt ttttgtataa aactaggaaa ttcaacccct gctataagtc caaaaattct
    11641 tgaactctca ttagaaaaac tcatttttca cctttcaaat ttaaaattac aatttcattg
    11701 ggagcaaaaa ctcttaaact aggcccccaa aaacctgccc cactgctaac aaaaagtttg
    11761 gtattttctc ctaaatcata aagcccacgt ataaaacctt gatgaagctt tactaaaaac
    11821 ataaaaggga aaatttgtcc cccatgcgta tgaccactta aaataagatc aaaatcactt
    11881 aaattataga gcaaggctgt tttaggctga tgagcaagca aaatactagc tttacttgtg
    11941 tttaaatcta ccttaaccct tgctaaatca ggagcgtaca aacccttact aagccctgct
    12001 aaatctccaa gtcctgcgat atttataaaa cctaggtcta aattttggtt aagtaaaatt
    12061 ttcatattgg tgtattcttt aagtaaattt aaaacttcat ctactccatg ataatactca
    12121 tgattaccca aagcataaaa agttccatag gtggatttta aatcattaag ccttgaaata
    12181 taattttgca attctttagg atttgtatct actaaatccc ccactataac caccatatca
    12241 ggcttttgca aatttacttc aacgatgagc ctatccaaaa aatccttatg caaattttta
    12301 cccaaatgta tatctgtaag catagctatt tttaagtcgc gatcaagttt ggcaagatag
    12361 atatccgtac tttgaatttc aggcactctt atagcgttat ttatacttgt ataaatcaat
    12421 actactgcta agcttatgat agttaaatca aaaaccgagc gcagggcaag actatatttt
    12481 ttatgcatct tacccattaa cattaaaata agccttataa aatcaagccc caaagttata
    12541 aaaaataaac aataagtcgg tgcatacaat gcagccaaaa attcgtacca agtatcgctt
    12601 aggtattcat ttctgcgaaa gattaaaaat atcgcttgag ctagaaaaag cagagtaaaa
    12661 acaaaggcaa aaattttata aagatactta aagataaaaa ttttcttaat caatctttta
    12721 taaatataaa tatttgccaa accaaaaatc aataacgtaa cgaaagaaaa aataaaaaat
    12781 atcataatcc taattatagc aaagcaaatt aaatatccat ataaattttt ctgttataat
    12841 aagcttttaa taaaatcaaa ggttatcaaa tgtatcgttt tgcaccttct ccaacaggcg
    12901 atatgcatat aggaaattta cgcgcggctt tatttaatta tatatgcgct agacaaaaaa
    12961 atatggattt cattttgcgt atcgaagaca ccgataaggc tagaaatata acaggaaaag
    13021 aagaagagat taaagaaatt ttgcatcttt ttggcatttc atggcagcat tattatgtac
    13081 aaagtgaaaa tttaaaattt catcgtcaaa tggctttaaa gcttgtaagt gaaaaaaaag
    13141 cttttgcttg tttttgcacc gaagaagagc ttgaagcaaa aaaagaactc gccaaaaagc
    13201 aaggcaaggc ctatcgctac gatggcactt gtcagaattt agcagatatt gatgttttaa
    13261 aatgtgaaaa accctttgta attcgcctta aaaaacctac tcacactatg aaatttacag
    13321 attttatcaa aggggagtta agttttgagc ctgaaaatat cgattctttt gtgattatgc
    13381 gaacagataa aacccctact tacaattttg cttgtgcggt agatgatatg cttgaaaatg
    13441 taagttgcat catacgcggt gaagatcatg tttcaaatac cccaaaacaa gaacatattc
    13501 gtgcaagttt aggttatgat aaagctatga cttatgcaca tttacctatt atcttaaatg
    13561 aagagggtgt aaaaatgagc aaaagagagg ctcattcttc agtaaaatgg ttacttgaga
    13621 gtggaatttt acctagtgcg atcgcaaatt atcttatcat gctaggcaat aaaactcctt
    13681 gtgaaatttt taccttagaa gaagcgattg agtggtttga tattagcaaa atttctaaag
    13741 ctccagcgag atttgatctt aaaaaacttt tgcaaatcaa tcgcgaacat ataaaaatga
    13801 tggcagataa tgaactcaat actgctttaa atttaaataa agatctagca caacttgcca
    13861 aattttatac ccaagaagca agcaccatca aagaaatcaa agaaaaacta gaagctatct
    13921 ttggtgctaa agattttaac gaatttgaac cagaatgtaa aattttaaaa gatcttttaa
    13981 gtcaaatcga accttttgag agttatgaag agtttaaaag ctatctctta gaaaaaagtc
    14041 aactaaaggg taaaaaattt tttatgcctc taagaattat cctaactgga aatactcatg
    14101 gccctgaatt aaatgatctt tacccttata taaaaaatta tattaacgaa ttagcaagga
    14161 tataaataat ggttgtagat tctttgatta tttctatttt tcaagtgatt caaattatta
    14221 tcaatattta cacttggatt atcatcatca cagcactttt aagttgggta aatcctgatc
    14281 cttacaatcc tatcgttcaa attttatata agctaagctc tcctgcttat gctttagtga
    14341 gaaaaattcc aacacgcata ggaagcatag atcttgcgcc tttgattatc gttttagcct
    14401 tacaatttct tagtattttt cttggaaata tcctaaggag cttattgtga gaaaaatact
    14461 tatcttactt agcttaagct tggtattttt aaatgctagc ccctataatt tagaaagatt
    14521 aaaacaagag gaaaattcca tagctaaaga ttattatatc tatcgtcttt tagaaaaaaa
    14581 aacaataagt aaaaaagagg ctgaaggctt aaattctcat atcttccgct atgtaggtaa
    14641 aatcaaatcc gaacttgaaa aaataattcc tgtaaaaatt ttcatcgatc ctaaatacgc
    14701 tccatgctac aactacacca aagctaatat acttgatgca aatcaaactt gccaaagtgt
    14761 aagattaaac tcaatagcct ttatagcaag ccttgataat gctagccgaa gtgccttagc
    14821 tcaaaaactt agtcatcaaa gagacgattt ggctaattta cttttagctt ttaacactcc
    14881 cgaacctatg gcttatatca ttcaaaaaga agatgttaat ggttttttta gacttcgtaa
    14941 ttattctaaa aaatatgatt ttgatttaaa tgctagtttt gccaataagc tacccactca
    15001 tgtagggttt aagaattttg cacaaaatat tatcataaaa aaagaaaatc ccaaatttag
    15061 ggcttcaatg ctaaaaatag atccaacatt tgtaaatgag gattctgctt tttatttagg
    15121 cattaatgcc ttagcctata ataaagagga actggcttac aatttctttg ccaaagcagc
    15181 acaaactttt aaaatgcaaa gcaacaaaga caatgctata ttttggatgt ggatgattaa
    15241 aaaagatgat aaagatttgc aaactttagc caaaagctct tctttaaata tctatagtct
    15301 ttacgctaaa gaattaacaa attctgaatt tcttaaaatt gaagtcatag attctacaaa
    15361 taagaaaaaa aacaatttca atatgcaaga tccttttgca tggcaaaaac tcaacaaaca
    15421 aattcgcgaa gctaatgcaa gcgaacttga tagattggct aaagaatttg actcaaaaga
    15481 aactctgcct atctatgctt atatcttaga aagaaaatca aaatttaaaa accattattt
    15541 tataatgcct tattatgaat acattaaaaa ttatagcgcc ccaagacaag cgcttatctt
    15601 agccattgct agacaagaaa gtcgttttat ccctactgcg atatcggttt cttatgcttt
    15661 aggtatgatg caatttatgc catttttagc caatcatatc ggcgagaaag aattaaaaat
    15721 tccaaatttt gatcaagatt ttatgtttga gccaaaaaat gcctattatt ttggaaatca
    15781 tcatttaaat tatttagaaa aacatttaaa atctcctctt tttattgctt atgcttataa
    15841 tggaggcata ggctttacca atcgtatgct tgcaagaaat gatatgttta aacaaggcaa
    15901 attcgaacct ttcttgtcta tggaatttgt tccttatcaa gaaagtcgaa tttatggaaa
    15961 aaaagtattg gctaattata ttgtgtatcg acgtcttctg aacgatagta taaagatttc
    16021 ggatattttt gaaaatttaa ctcaaaacaa ggcaggtgat ttaaacaaat cttagctgta
    16081 attttgtctt ctttttttac gcttggaaga gttattttta gataacgggt ataacgattt
    16141 tgtatcaagt atttaaaaaa ctcttcatca agttcttcta tattagcctt tctttcattg
    16201 ataaaaattt ctaaattttc tatcttcaaa gtatcaggag tgatagtcaa agcaaaaata
    16261 tcctcctcgc tagctttatc taaaatagga tttaaataag acagggtaat tatagcattc
    16321 attttatctt gagtaatttt atatttttga gcaaacatta aagtttgagt tttcaaattc
    16381 gcatccacaa ccgcttcttc ctttaaagaa caagcactaa aaactaacat tgcaagagct
    16441 aaagtataaa tcttcatatt tttcctaatt tttttctata ttttaacctt ttaactctat
    16501 tttttggttt aaaatactat aatttacatt ttattttagg aaaatggtaa tgaaaaaatc
    16561 aatcatagct tttagcggtc cctcaaattc aggcaaaaca acactgatca caaaaattgc
    16621 aaatgaattt ataaaacaaa acctaaaagt tttgattatc aaacacgatc ctgcagataa
    16681 agctcaattt gattttaacg gtaaagatag ttttaaattt tttcaaagtg gagctgaagt
    16741 catggtttta agccctacaa gaacaacttt tttttctcat gaaaatagag atattttaaa
    16801 agctttaaaa ttaagccctg attttgacat ttgtttggtt gaaggattaa aaactcttga
    16861 tttaccacgc attagcgtat tttgcaaaga aattgatgaa agttatttta ttttttcaaa
    16921 cgccattgca agctatgaaa aaatttctca cccttatctt acttggcttg atttaaacga
    16981 tatacaagct atttgccaat acatacttaa aaatgctaaa aatttacaag gagaattata
    17041 aaatgcaaga agtgatttct tatatacaaa aagcggtttt agaaatttct aacgctttaa
    17101 aatttcccga tacaagctac agtcaaaatc aaaattttac aggcgatacc caactcaaat
    17161 ttgatgtttt aagtgatgaa atcatcacaa aaaccctaag tcaatgttca agtattaaag
    17221 ccatcatcag cgaagaaaaa gatgaaattt taaatatcaa tgaaaatgcg aaatttatcg
    17281 tcgcttacga tccgcttgat ggctcaagtt taatggatgt taattttgct ataggttcta
    17341 tttttgctat ctatgaagaa aaagcaagtg ctaaaaattt aaaagctgcg ctttatagca
    17401 tgtatggagc tcgcttggag cttgtgattt gcaaagatca gccaaaactc taccgtcttg
    17461 ataaaaacaa cgaatttgtt tttgtaaaag accttcaaat gcaagaaaaa ggtaaaatca
    17521 atgctacagg cggtactcaa aaattttggg aagaaaagca tgctaagttt atcaaaaaat
    17581 tattcgatga gggttatcgc ctaagatatt caggagctat ggtaagtgat atcaatcaaa
    17641 ttttgctcaa aggtggtgga ctttttagct atccagcaac tagtgatgcg cctaagggta
    17701 aattgcgcgc tttttttgaa gtatttcctt tagcttttat tatagaaaaa gcaggaggta
    17761 aaaccacaaa tggaaaaaat cattccttgt tagaacttga ttttgatgaa attcacgcaa
    17821 ccacaccttg cttttttggc tcaaaatatg aaatttcaga gcttttaaag gcttataatg
    17881 agtgaaataa gagatgagtt tgagcaagac ttagataaaa aaaaagaaat tttaagctct
    17941 tgccaaagct caaaaggctt aaagtcttgc tataattgcg atgaaatttt taattgctct
    18001 acaagaaaag attatgtaga tgcagtttac aatagtatgt ctaagggtaa aaccgaaggc
    18061 ggatttgatt tttaaaggaa taaaatgcgt tatcttacaa ctccaattta ttatgtaaat
    18121 gatgtgcctc acttaggaca tgcttatacc actatcattg cggacacttt agctagattt
    18181 tatcgtttgc aagggcatga gactagattg ttaacaggta ctgatgaaca cggacaaaaa
    18241 atagaacaag cagcaaaaat aagaaactca accccaaaag aatacgctga taaaatcagt
    18301 tctgaattta aaaaactttg ggatgagttt gaaatcactt atgatatata tgcaagaaca
    18361 accgatacta ggcatgttga atttgttaaa gctatgtttt taaaaatgtg gcaaaaagga
    18421 gatatttata aggatgaata tgagggacat tattgtattt catgtgaaag tttttttgca
    18481 aaaagtcaac ttataaacga atgtggatgt cctgattgtg gcaaagatac ttctttatta
    18541 aaagaagaaa gttatttttt taagctttca aaatatcaag ataagattct tcaatggtat
    18601 gataaagaag atcctatctt gcctaaaaat aaaaaaaatg aattgattaa ttttgtccaa
    18661 agtggactta aagatctttc tattactcga acaagctttg attggggtat tgaaatccca
    18721 gaagaaatta aagacgataa acacattatt tatgtatggc ttgatgcgct ttttatttat
    18781 ataagctcgc ttgattatca aagccaagga gaaaatgcta aattttggcc agcccacata
    18841 cacttagtag gcaaagacat cttgcgtttt catgcgattt attggccagc ctttttaatg
    18901 agtgtggatt tacctttgcc taaatttatc ggcgcacacg gttggtggac taaagagggt
    18961 gaaaaaatga gcaagtctaa aggtaatgtc gtaaaaccta aagaagtggt agatgcttat
    19021 ggcttagagg cttttagata ctttctgcta agagaagttc cttttgggaa tgatggtgat
    19081 tttagcgaaa gtgttttgat taatagaatc aatacagaac taggcaatga atttggcaat
    19141 ttactcaacc gcatcatagg aatgagtata aaatataatc aaggtaatat ttctcaagaa
    19201 ggcgttttag aattttataa aaacgaactt gatacggcta aagagcactt agataacgct
    19261 ataaactttt tagaaaacct acaatgtaat cgctatctag aagagctttt taaagcctta
    19321 agtgttgcaa atttagccat tagcaaatac gaaccttgga atttaatcaa agcaaataaa
    19381 atcaaagaag ccaatgctct tataggactt tgtgcaaata tcttagctaa aacaagtctt
    19441 ttattaagcc ctactttgcc aaaatcttgt caaaaagtag gtttggcttt aaattttgaa
    19501 atttctccta caaactatca aaaacttatc ttacaaaatg aacttttaga ttttaaggct
    19561 agcgcctgtg aagctttatt tccaaaaata gaaaaacctc tcttatctca agaagaaaaa
    19621 caagaagtca aaaaagaaga aaagcctaaa attaaaatcg atgattttgc aaaaatagag
    19681 attaaggtag ccaaggtgat tgattgtcaa aatatagaag gcagtgaaaa acttttaaaa
    19741 tttaaactcg aacttgacaa taaagaaatt cgtcaagtgc tttcaggtat tgctaagtat
    19801 tataaagcaa gcgatttgat aggaaagcaa gtttgtgtta taagcaatct taaaaaagct
    19861 aagatttttg gacatgaaag cgatggtatg atactttctg caaaaagcgg ggataaactt
    19921 gtgctcataa gccctgaaca acttgtagaa aacggctctt tagtaggcta ggatgaatat
    19981 tagcaatcta agcgaactca ttcatgcaaa tatgcttaat gaaggcagtg ttttaagcgt
    20041 tacaggcttt gcattaagtc ttcatgagct taaaaatggc ttcgcttttt ttagcaataa
    20101 taaaaaagag ataatccaag cagtgcaaaa aggcgcattt gctattattt cagagcatga
    20161 gctttgtatt gatgataaag aaatttatta tcttcaggtg gataatctag aatcagcctt
    20221 aattaaactc ttgcgttttt tatgcgaaga aaaagagtgt gaatttatag cacttcaagc
    20281 ttatgagcta ggaatttgca aagcattttc tttaaacatt ttaaaaggaa atatatttgt
    20341 agattttaac tcacttatca aggctaaaaa gggtgaaatt ttttgtttta gcgatgagaa
    20401 ttacttactt caactttgcg catctttaac aatcctaaaa gaagcaaatt ttaccctact
    20461 ttctcgctct agcttttttt ttacgactct agtttgtgat aatttgtatt ttaaaaactt
    20521 aaatcttccc tttatttatg ccaaaatttt tgcaaaaatt atgttttatc ttaaagaaaa
    20581 aaatacaaaa atgagttttg attttaataa gatagatgat tttaaaattt atttcatgga
    20641 tgaaaatttt aatatttctg aatttggctc aagtgcaaga gcatttatca tcgtaagcaa
    20701 tcaaaatacc tttgattttt ggcaagaaaa ttttaaaaat ataaagggtt ttaaaaccgc
    20761 tttgcataat tcattattct gcgatttttc atacgacaaa cttttagatc ttaaaaactt
    20821 aaaaaatttt aaatactgcc tgcttttaga agattatgaa gcttttgagc gtgaatttaa
    20881 aaatgaagaa aatcaatctc caagcttatt tttaaactga cttaaatcaa ccccctcaca
    20941 ttctaacaaa aatcttttta tagcaagacc gccattatat ccacccaagc cattactagc
    21001 tataacccta tgacaaggaa taaaaatagg aattaaattt ttagagtttg cattacccac
    21061 tgcgcgaaaa gctttgggat ggttgatatt tatagctatt tctttgtaag taacaagctt
    21121 tgcataaggg atatttatca attctttata tactttttgt tcaaaatcac ccccttgtat
    21181 ccataaaggt gtttgaaatt tttgaagctt tttagcaaaa taaagtctga gttcttcttt
    21241 ggcaaattca agcaggggac aagtattttc aatatccaaa cgatcgcaaa aatcgatttt
    21301 tgttaagaaa tctccattgc tatgtagaga taagtaacaa aatggtattt tata
//
LOCUS       DBBXRO010000014        21189 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.014, whole genome shotgun sequence.
ACCESSION   DBBXRO010000014 DBBXRO010000000
VERSION     DBBXRO010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21189
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.014"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(40..1425)
                     /gene="fliI"
                     /locus_tag="ACJFEZ_000402"
     CDS             complement(40..1425)
                     /gene="fliI"
                     /locus_tag="ACJFEZ_000402"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030257 - type III protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0030254 - protein secretion by the type III
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HGG0916545.1"
                     /translation="MNLEKLRSKLGKENLSAVFGEITKISTTSIEIRGLKTGVGDIIK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMGDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAIAKKEFMQKFLGQNPEESFEFEETIRLLSQIDANVAPSAVQQNINMGS
                     SNATLPNPNLK"
     gene            complement(1425..1997)
                     /gene="folE"
                     /locus_tag="ACJFEZ_000403"
     CDS             complement(1425..1997)
                     /gene="folE"
                     /locus_tag="ACJFEZ_000403"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HGG0916546.1"
                     /translation="MQEKFENCVKTMLEIMGENPTREGLVKTPNRVFKAYEFLTSGYK
                     KNVKEILNNALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRVHVAYIPDQKVVGLSKI
                     PRLVEVYARRLQIQEQLTEQIAEALMENVGAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGLFLKNEKTREEFFSLINSPKQVRF"
     gene            2118..3443
                     /gene="tig"
                     /locus_tag="ACJFEZ_000404"
     CDS             2118..3443
                     /gene="tig"
                     /locus_tag="ACJFEZ_000404"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HGG0916547.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKNVKMDGF
                     RPGKVPVAAVLKRYQKELTQDAEQNLFKSAVDSALKELKKEAKELVGEPYFEKFDRKD
                     GEIVAELALSFKPEFKLDGYEKLIPEYQTPKVTKKEIDEKKEELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDGKAFDGGKAENYVLEIGSKQFIPGFEEGMVGMKSGEEKDVK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKLPELDEGMLKNLLQNEEKPTVELLDEKL
                     KEQIKNEKLFKLVNDELKAKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFSDIFMPKTDKASKKEKEDK"
     gene            3443..4027
                     /gene="clpP"
                     /locus_tag="ACJFEZ_000405"
     CDS             3443..4027
                     /gene="clpP"
                     /locus_tag="ACJFEZ_000405"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HGG0916548.1"
                     /translation="MYIPYVIEKTSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPQKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGTEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKAILNDILAKNTKQK
                     VAKIVKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            4055..4582
                     /gene="def"
                     /locus_tag="ACJFEZ_000406"
     CDS             4055..4582
                     /gene="def"
                     /locus_tag="ACJFEZ_000406"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HGG0916549.1"
                     /translation="MVRKIITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGV
                     GLAAIQVDIPLRALIVNILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDF
                     FEEVERYNHILLKYQDRFGNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKF
                     DKEFKKKLKNQKKSK"
     gene            4579..6084
                     /locus_tag="ACJFEZ_000407"
     CDS             4579..6084
                     /locus_tag="ACJFEZ_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HGG0916550.1"
                     /translation="MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIE
                     RIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDLVIATLILLQNEDFDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
                     FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALG
                     MHNILFEGSPGSGKSMCAKRLVEIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHP
                     HHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLY
                     VAMDEISKDDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAK
                     DTLDLAISRYNLSQRALNKILKVSRSIADFEEKELLSKNHILEALSFRMRS"
     gene            6086..6784
                     /locus_tag="ACJFEZ_000408"
     CDS             6086..6784
                     /locus_tag="ACJFEZ_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HGG0916551.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEIIIKRIYGDWTQ
                     KNIQAWKEQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKDIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDQDENKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFNPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYENYY"
     gene            6768..8138
                     /locus_tag="ACJFEZ_000409"
     CDS             6768..8138
                     /locus_tag="ACJFEZ_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HGG0916552.1"
                     /translation="MKTITDDIKTLEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RKQYKIKKVKILFLLGGGNNAADGLVALRNLKHAKAYKLGFKENEIFKKQEQILKNFG
                     FKFAKKEPKFKKFHIIVDCILGTGTNREVDEKTKEILEKVNQSKALKIACDIPTNLGF
                     TPCFKADITQCMGALKEILLEDFAKEFVGKIKLANLGINAKKFSLDSKAFLLEEKDLK
                     TIERNTSSNKGNFGHIYIIASASAGTLAGLGALNFGSGLVSLVAKKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDILKDEILQNIPLVLDANCFLSEAVLWYLSRKDVVITPHPKE
                     FIRLYKMCFDEDLSIEDLQRNRFFYAKKFAQNYDCVLVLKGANPIIIQKEKIFVVNLG
                     NEALAKGGSGDVLSGMIATLLGVKFSALEAAKNACLAHALVAKKYKFNKNSFDAIKLI
                     KGLKCL"
     gene            8129..8704
                     /gene="purN"
                     /locus_tag="ACJFEZ_000410"
     CDS             8129..8704
                     /gene="purN"
                     /locus_tag="ACJFEZ_000410"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HGG0916553.1"
                     /translation="MLVKLAVLFSGNGSNLQNILEKLHKKTIGKNTYEVVLCLCNKKD
                     AYGIQRAKNFDLESVIIEHKDYKNREEFDEILVKKIKESGADLTILAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVNEELDGGKIIAQKAFEKQ
                     NLTFEEFEAKIHGLEHEILPLSVVEIFENCH"
     gene            complement(8842..9078)
                     /locus_tag="ACJFEZ_000411"
     CDS             complement(8842..9078)
                     /locus_tag="ACJFEZ_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916554.1"
                     /translation="MENGNLKVDEQYKVTLPPNLITVLEYDKKDFEGATLKNFIDDVE
                     CELSDWEIELYDDPHFMDMMKMRRDMKMMKMMKK"
     gene            complement(9244..9375)
                     /locus_tag="ACJFEZ_000412"
     CDS             complement(9244..9375)
                     /locus_tag="ACJFEZ_000412"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916555.1"
                     /translation="MTSDQLEKKFNIFYKDYEDRNEYCDLLNEAIRKDKEKENLQKN"
     gene            complement(9426..9959)
                     /locus_tag="ACJFEZ_000413"
     CDS             complement(9426..9959)
                     /locus_tag="ACJFEZ_000413"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HGG0916556.1"
                     /translation="MRAARTCGANNNDFSILDYLFDEYGLSLKDPKYNFRFADMKYIK
                     EANDKYIVVRYMEDNPSIYKEALIYRYILKVRNPNPQIIQYLANHGAKFEVYREDTGW
                     SPIHFWASNNDYKFLELAIKGGANVDMEEYEFESIYKYQDTPLFEAVKESGNYRTVQL
                     LIELGANVNFVPYLRHL"
     gene            10100..10840
                     /locus_tag="ACJFEZ_000414"
     CDS             10100..10840
                     /locus_tag="ACJFEZ_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HGG0916557.1"
                     /translation="MFEWIFSAEMWIALATLIGLEIVLGIDNIIFIAILVGRLPKEKR
                     QRARIFGLSLAMITRLLLLLSLFWIMKLTTPLFSVFSQEISGRDIILILGGLFLIAKS
                     TLEIHHDIDNAGEKSDEEVLKEGAKRGFFSILIQIAVLDIVFSLDSVITAVGMVNNIE
                     IMMIAVVVAVFVMMLASKSISNFVDDNPTIKILALAFLILVGVTLVAEGLDFHISKTY
                     VYFAMAFSLGVESINIYIKKKRLAQEKS"
     gene            10890..11099
                     /locus_tag="ACJFEZ_000415"
     CDS             10890..11099
                     /locus_tag="ACJFEZ_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HGG0916558.1"
                     /translation="MPKDANGTELNAGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KENEIEAKVDKFGVIVLKTEFLKKI"
     gene            11108..12292
                     /locus_tag="ACJFEZ_000416"
     CDS             11108..12292
                     /locus_tag="ACJFEZ_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HGG0916559.1"
                     /translation="MRILLILRGNYYAGQEEFIKENRLKDYTLDLNSLRLLSGSVSKI
                     VSKYKNLNLKNDEELYKILLQFLEMRMQKGEFCIINAYNETLKVYKELAKQYRYDIYI
                     IDFKSSLEECLRKNEQKAKERGYIVSQSLLKKTHHLLERIPKKYTILNPNDWKKCLYQ
                     MPNLSKYRKIHHIGDIQGCFSILKEYLQELEDDECYIFLGDYIDRGIENGKVLKFLLK
                     ICERENVYLLEGNHERHLIKWANGELSSSKEFNENTLKDFRKEKLTPRDARKFYPYLK
                     ECLYYKFHEKQVFCSHGGVNLLPSKAYQISFMPSYDFIYGVGNYEESQKVASQFCEFT
                     KDNVYQIFGHRNRTKLPVQIEKRVFLCEGKVDDGGHLRIVTLDKKGFECIELKNKVYR
                     KK"
     gene            complement(12304..13665)
                     /locus_tag="ACJFEZ_000417"
     CDS             complement(12304..13665)
                     /locus_tag="ACJFEZ_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HGG0916560.1"
                     /translation="MDPSQVLDLNQTLPTASFDAGYSILMVVIALALVLLNGFFVLSE
                     FSIVKVRRSKLEEMVKEKKVGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAI
                     AKMLEIPLANLGFNGVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAIADKAVLWVA
                     RPLHWFWILFLPCIKIFDFLAAMTLKLFGIKPAKESELTHSEEEIKIIASESQKGGVL
                     DEFETEIIRNAVDFSDTVAKEVMTPRKDMICLNKQKTYAENMQIICDHKHTRFPYIDG
                     SKDTILGMIHIRDIVQNELSDKSENLDTFVKPLILVPENISISKVLVMMNKERSHTAL
                     VIDEYGGTAGILTMEDIMEEIIGEIKSENEEDSYKKLAENIYEFQGRCDIETVEEMLL
                     ISYDEDLEQVTIGGYVFNLLGRLPVAGDRIEDELCYYEVKKMDGNSIERVKVVKKTNK
                     DEE"
     gene            13783..14910
                     /locus_tag="ACJFEZ_000418"
     CDS             13783..14910
                     /locus_tag="ACJFEZ_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0916561.1"
                     /translation="MLKILIIFCATLTLSIVYAPQPIAPLLSNYFHVNLHQISWIISV
                     TLIPLAIAPLVYGYLLEIFSLKKILVVSLFLCSIFGIIGNLNDNFYFFLFLRFLQALC
                     IPAILTALLTLLSRLESDNIQKNIAIYVGATTFGGFVGRVFGSFLSDLFSWHFALNFF
                     SILMMVCAFLFLFFKEHPISLNTQTSLRDFLPFIKELRFMVILFCVFTIFFSFQSIVS
                     FLPFHLKESIKDITQTQIGLVYLGFLTGVISSLLIGKTIEILGSKIRTAIFGFLVFIA
                     GCFCMIVGNFYFAFFAMFVFCSGMFISHCIFSGILNSIADKKGLANGIYLTFYYSGGA
                     LGSVLPSFYYESFGWEFLCIFTAFLLFIALIIFSKFRHFYK"
     gene            complement(14901..16121)
                     /locus_tag="ACJFEZ_000419"
     CDS             complement(14901..16121)
                     /locus_tag="ACJFEZ_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HGG0916562.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYMQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNTTQKAEEKFENNASLIQEANQKAQENFQKANFINKGALYYYQSL
                     LEYFFNSRAMIEKESYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIRALMTLVAFIPILWTLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYVALLISLGGLIVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIHKRLKEFE
                     KNIEYAKNKNKNHL"
     gene            complement(16177..16923)
                     /locus_tag="ACJFEZ_000420"
     CDS             complement(16177..16923)
                     /locus_tag="ACJFEZ_000420"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HGG0916563.1"
                     /translation="MKSGMIFGLVSSLILHALVLMFFLFSFYTQEKSSGVDFKQGVEF
                     TSIMMVSELPIGELKEVSIDQKKSNSQDKNKKQDEKMSLNSQDKNAVLKAQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQIKSYQALLMAHLAK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAVLNDEVLSLFKRASPLP
                     KPPKEMLKDGEKISFVMPIDYNIKDYLGKK"
     gene            complement(16926..17336)
                     /locus_tag="ACJFEZ_000421"
     CDS             complement(16926..17336)
                     /locus_tag="ACJFEZ_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HGG0916564.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLANALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKVD"
     gene            complement(17323..18084)
                     /locus_tag="ACJFEZ_000422"
     CDS             complement(17323..18084)
                     /locus_tag="ACJFEZ_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HGG0916565.1"
                     /translation="MLKKIFLFCFLLLNLNAEVNVTDTNLSFDSPKIEAEVPKIELSL
                     SSLYQNADEVVKGVIYILVLFSVLAWAVFISKLMQFYFMKKNLDFSIHKIKELKNLNE
                     LDQTKGFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLVAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(18097..20373)
                     /locus_tag="ACJFEZ_000423"
     CDS             complement(18097..20373)
                     /locus_tag="ACJFEZ_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HGG0916566.1"
                     /translation="MKKLSLFCVMGLCFANFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTRDNLNSNTQSIDSIVRSVPGAYTQVDQAQGGVSVNIRGMTGLGRVNTQIDGV
                     TQTFFGSASDDSFHGQIGTSSFTAPIDKNFLVALDVNRGTFSGANGANALMGSANFRT
                     IGVDDIVQEGRVFGFLGKYSYGSNAIGPNFMGAIAGKTMLENNANLGILFAYSGQNVS
                     QNYKIGGGGYIGDQKPPFDTDDDGIPDDNLAAPINPNNLYNQPRSQLFKVEYKSDISE
                     AILNYRAYKNNLAGRKITNDTYQIDYRLNPDSNLLDLKFLFAYNDGKQKYNQGSTWGY
                     HDMSGVKTKNRAVTFDLSNTMNKEFSQDSNLYFTYGVNILNNHYSNDFPQDRVLLPYI
                     LTSFYPKGKQDIKTLYLDTSFTKGIFTLNSNINWTNAQLSGYKGICSMANPYCQPKNA
                     TNLEKDYNNFNYSLMLSADIHPLFNPFISYSKSHRIPNVQEYFFTHDASFEHNMNTFL
                     KAESADTYQIGFNSFTHEILNDSDTLGFKMLYYDTKVKNYIYNRRYWQKADDAIFLMQ
                     LNDDEKAKFHGVELEFKYDTGFFYSILSYTYQKSKHKFSDTESLEFGGAQSGQSQFAQ
                     LPEHYANLDMGVRLFEEKLTLGALAKYTGKAKRIVPVGSLDDDPSNPDAMAPLKTTDE
                     LPKIPTIVDLYANYKILKNFTIKAEVQNLFDKNYMDALYSYNTGENQNAGGLFDPIYI
                     YNNSARGRTFIVSFEYKY"
     gene            complement(20383..>21189)
                     /locus_tag="ACJFEZ_000424"
     CDS             complement(20383..>21189)
                     /locus_tag="ACJFEZ_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HGG0916567.1"
                     /translation="SFMLSACAVLQKPSPLQENKDFYILDTHTQKKISFEDMIVELLK
                     ADVILLGEKHDEAKHKISQVMIFNALEGNLSSQNISFDVALEMLASTEQNHLDKAFKN
                     KKTIKTNELTNALNWDKGWKWKDYDQFVNAVFYSRAKILGANLSRSEITSIYNGVQPL
                     KGYVSTTNEVKKQIFDTISLSHKLNPQENKELLDKLVEIQQFKDRRMADVLVHHTNKI
                     LLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLNYGERDLKDSDYTFIYY"
BASE COUNT         7319 a         3335 c         3271 g         7264 t
ORIGIN      
        1 ttctatattt attgaaatta tttttaatac aaaaaaagat tatttaagat taggattagg
       61 tagtgttgcg ttagaacttc ccatattgat attttgctgc actgcactag gggcaacatt
      121 agcatcaatt tgacttaaaa gtcttatagt ttcttcaaat tcaaagcttt cttcgggatt
      181 ttgtcctaaa aatttttgca taaattcctt tttagctata gcttcatcaa gctccttatc
      241 actacccttt tgataagcac cgatacgaag taatacttca ttttctttca aaagcgaatt
      301 taagcgttta aattttctag cccaaagttt gtgttcagga cttatgatat cgcccattac
      361 ccttgaggct gaattttgta tattaatagg aggataaatt ccaaaatccg taagctcacg
      421 acttaaaaca atatgcccat ctaagataga acgactttga tcggcgatag gatcactcat
      481 atcatctcca tcaaccaaaa cagtaaaaaa cgccgttatg gttcctttac cttcttcttt
      541 tcccgttctt tccatgagct gaggcaaaag acttaaaaca cttggaggat agccttttgt
      601 agtaggaggt tcgccaaggg caagtcctat ctctctttgt gccatggcaa accgcgttac
      661 gctatccatg ataaaaagta catctttgcc ttgttcttta aaatattcgg ccacgctcat
      721 agcgcaaaat gctccatatt ttcgcattaa agcactatca tcacttgttg caacgataat
      781 taccgtatca tcaagctttc cacctaaatt tttttgtata aattcaggaa tttcgcgccc
      841 tctttcgcct ataagtgcga ctactttgat aggagctttt gaatttttaa ctatcatacc
      901 cataagagta gattttccta cgccacttcc tgcaaaaatg cctaattttt gccccacgcc
      961 acaagttaaa agcgcgtcta tggttttaac tcccacagga aaaacctctt ctataagtcc
     1021 tcttttcatc gcatcaatag gtgcacgcat gataggcata tatttagtcg cctctatagc
     1081 acccttgcca tctttagggc gcataaaagg atccaccact cttcctaaaa gctcatcact
     1141 aacgcctatt tgcattcctg catcacttat aaaagcgcgg tcgcctattt taaaaccttc
     1201 tatgaaagaa aaaggactta gatagctaaa ttgctcttta atttcaacaa ccatagctaa
     1261 ggtgtttaaa ttttcatttt catttgaaac aagtttaatg atgtcaccca cacccgtttt
     1321 aagtcctcga atttctatac ttgtagtaga aattttagtg atctctccaa aaacagcact
     1381 taaattttct ttgccaagct tagaacgaag tttttctaaa ttcattaaaa acgaacttgc
     1441 ttaggagaat taatgagtga aaaaaattct tcgcgtgttt tttcattttt taaaaaaagt
     1501 ccacgaagag ccgaagtggt agtagtagaa tttgcttttt gtaccccacg catttctaca
     1561 cacatatgtc ttgcttctat aaccacacca acaccttttg caccaacatt ttccatcaaa
     1621 gcttcagcaa tttgttcggt aagttgttct tgaatttgaa gtcttctcgc atatacttct
     1681 acaagacgtg gaattttgct aagcccaacc actttttggt cagggatata agccacatgc
     1741 acgcgcccaa aaaaaggtaa aaggtgatgt tcgcaaagac tgtaaaattc tatatcacgt
     1801 actagaacca tttcgttatt tgagctttca aataaagcat tatttagtat ttccttgaca
     1861 ttttttttat atccacttgt taaaaactca taagctttaa aaacacgatt aggcgtcttt
     1921 acgagtcctt ctctagttgg attttccccc ataatttcaa gcatagtttt tacgcaattt
     1981 tcaaattttt cttgcaaatt attctccgta tttttttctt ggctcatttt aacataaaat
     2041 gctttaaaat tttatgcaac taataaggaa aaatttgcta tgattaaagc aaattttatt
     2101 ttataaggaa aaatgttatg gaagtaaaag caaagcaatt agactctgtt aatgcgactg
     2161 ctagtgtaaa aattccttca gggatgatta aaagcgaagt agaaaattta gctaaaaaag
     2221 cttctaaaaa tgtaaaaatg gacggcttta gaccaggaaa agttcctgtt gctgctgtac
     2281 ttaaaagata tcaaaaagaa ttgactcaag atgcggaaca aaatcttttt aaatctgctg
     2341 ttgatagcgc tttaaaagaa ttaaaaaaag aagcaaaaga acttgtaggt gagccatatt
     2401 ttgaaaaatt tgatcgtaaa gatggagaaa ttgttgctga attagctctt tcttttaagc
     2461 ctgaatttaa actcgatggc tatgaaaaat tgattcctga gtatcaaact ccaaaagtaa
     2521 ctaaaaaaga aatcgatgag aaaaaagaag aattattaaa acgctttgct actcctgaag
     2581 ctattaaaac caaaagagct ttaaaagaag gtgattttgc aaaatttgat tttgagggtt
     2641 ttgtagatgg gaaagctttt gatggaggta aagctgaaaa ttatgtttta gaaataggtt
     2701 ctaaacaatt cataccaggt tttgaagaag gtatggtagg aatgaaaagc ggagaagaaa
     2761 aagatgtaaa agtaactttt cctaaagaat acggcgcagc acatttagca ggaaaagatg
     2821 cggtatttaa agtaaaattg cacgaaattc aagaattaaa attgcctgag ctcgatgaag
     2881 gaatgttaaa aaatctttta caaaatgaag aaaaaccaac agttgaactt ttggatgaaa
     2941 aacttaaaga gcaaatcaaa aacgaaaaac ttttcaagct tgtaaatgat gagctaaaag
     3001 ctaaatttgc tgatgctttg attgaaaaat ataattttga tttacctaaa ggcatagtag
     3061 aacaagaaac tgatatgcag atgcgtgcgg cttttaatac ttttagcgaa aaagaaattg
     3121 aagaacttaa agcaagtaaa gaaaaatatc aagaaaaacg cgattctttc aaagaagaag
     3181 cgcaaaaaag cgtaaaactt acttttatca ttgatgagct tgcaaaactt cgtaagattg
     3241 aagtaaatga tcaagaattg attcaagcga tttattttga agcttatcgt tatggaatga
     3301 atccaaaaga acatttagaa aattataaaa aacaaggggc tttacctgca gtaaaaatgg
     3361 ctttgatcga agaaaaactt ttcagcgata tttttatgcc aaaaaccgat aaagcaagta
     3421 aaaaagagaa agaagataaa taatgtacat accttatgta atcgaaaaaa caagccgcgg
     3481 tgaaagaagt tatgatattt attcgcgtct tttaaaagat agaattatta tgctaagtgg
     3541 cgaaattcat gatgaacttg ccgcttctat cgtagcacag cttctttttt tagaagctga
     3601 agatccacaa aaagatatat atctttatat caattctcca ggtggtgtga tcacaagcgg
     3661 ttttagtatc tatgatacta tgaattatat caagcctgat gtttgtacga tttgcatagg
     3721 tcaagctgca tctatgggtg catttttatt gagttgtgga acagaaggca agcgttttgc
     3781 tttgcctaat tcacgcatca tgatacatca gcctttaggt ggtgcaagag gacaagctac
     3841 ggatatagaa attcaagcca aagaaatttt aagattaaaa gctatactta atgatatctt
     3901 ggcaaaaaat actaagcaaa aagtcgctaa aatagtaaaa gacacagaaa gagatttttt
     3961 catgtcagca caagaagcta aagagtatgg tttgatcgat aaggttttag aaaaaagttt
     4021 taaatgagta aaatcattta aataaaggtt gtttatggtt agaaaaatta tcacttatcc
     4081 taattctaga ctttttttaa attctgaacc tgtaaagcaa tttgatcaag aacttcatac
     4141 tctgcttgat gatatgtatg atactatgat tgctagtcaa ggagtgggtt tggctgctat
     4201 acaagtagat atcccacttc gtgcattgat cgtaaatatt ttagatgaaa atgaagagca
     4261 gaaaaaagaa gacttactag aaattataaa tccgcaaatc attcctttag gtgaagaaaa
     4321 aatcacctgc actgagggtt gtttaagcgt gcctgacttc tttgaagaag tggagcgtta
     4381 taatcatatc ttgcttaaat atcaagatcg ctttggaaat tttaaagaat tagaagctca
     4441 aggattttta gctgtggcca tccagcatga aaatgatcat cttaatggtc atttatttat
     4501 agaaaagatt tcttttttaa aaagacaaaa atttgataaa gaatttaaaa agaaacttaa
     4561 aaatcaaaaa aaatctaaat gaaaaaatta aaatgtgtaa gctttgatga gaatttagat
     4621 atcatcgatg tagagtctac atttacaaga ggcttaccta atttaagcat agtcggactt
     4681 gcaaatattg caattaaaga aagtatcgag cgtatcaaag ccacactttt aacttgcaat
     4741 ttttcatttc ctgctaaaaa aatcaccatc aatcttagcc cttcaggaat tccaaaaaaa
     4801 ggttctcatt ttgatttagt tatcgctacg cttatattgt tgcaaaatga agactttgat
     4861 gatttttttg tggtaggcga gcttggtctt gatggaagta tcaaaagcac caatgagctt
     4921 ttttctttac ttttattttt atccacaaag gtaaaaagtg caaaagttgt agtcccaaaa
     4981 aatatagctc taaaagcttc tatgataccc aatctagaaa tttatggact tgagcattta
     5041 aatgaagtga ttgaattttt taaagaaaaa aactatgaga aattcaaatt cacccaaagc
     5101 catcctttat ttgcaaatcc tttgattata gaaaatgaaa tttttattaa aaatcatcat
     5161 tttgaacttg attttaaaga tatcaaagga caagaaaaag ctaaaagagc ttgtttgata
     5221 gcagcactag gtatgcacaa tatacttttt gaaggaagtc caggaagtgg caaaagtatg
     5281 tgtgcaaaac gccttgttga aatcatgcct ccacaaagtt taaatgaggt tttaatgcaa
     5341 aatgcttata tgtctttaaa ttctaaagat tgcgaattta cgcaaaaaag agccttaaga
     5401 caccctcatc atacctctac aagagctagt atttttggtg gtggagcaaa aaatgcgaag
     5461 ataggtgaaa tcgctctagc taatggtgga gttttatttt ttgatgaatt tcctcatttt
     5521 aacaaacaga ttatcgaaag tctaagagaa cctctagaag atcataaaat tcatatttca
     5581 agagtcaatt caaaaaccac ttatgaaacc aaattcagtt ttgttgccgc tcaaaatcct
     5641 tgtccttgtg gaaatttatt ttctaaaaat ctgtcttgcg tttgtagtga aaatgagatt
     5701 aaaaggtata aaaatcacat ttcagcccct attatggata gaattgatct ttatgtagct
     5761 atggatgaga tcagcaaaga tgataagtca agtataaatt caaaagaaat gagtgaaaga
     5821 attttaaagg cttttatctt tggcaaaaaa cgcggccaaa aagaatttaa tggcaaatta
     5881 aatgatacag aattgcaaaa attttgtatt ttagaaaaag atgccaagga tactttggat
     5941 ttagccattt cgcgttataa tctttcacaa agagctttaa ataaaatttt aaaagtttca
     6001 agatctattg cagattttga agaaaaagaa cttcttagta aaaatcatat tttagaagct
     6061 ttgagtttta ggatgaggag ttaaattgga aaataaaagc atagctattt ttatcgatgc
     6121 ggaaaatata cccgcaaaat acgcaaaaag tatttttgat atcgcttcgg attatggtga
     6181 aataattatc aagcgtattt atggagattg gactcaaaaa aatattcaag cttggaaaga
     6241 gcaaattgct gagtattctt taatcgctat gcagcagttt aatttcgcag caaataaaaa
     6301 ttcaagtgat atgtatttaa tcactgaaat tatgagtata ttttatgaga aagatattga
     6361 tatttttgtc attgtttcta gcgatagtga ctatacctcg ctcattcaaa agctaagaga
     6421 aaacaaaaag caagttatag gaatgggtct tgaaaagtct ataaaatctt atgtaaacgc
     6481 ttttagtgag tttttttacc ttgatcaaga tgaaaacaaa aaagaagata ttttaagcaa
     6541 ggattattta agagctttga tcaatatcac agaacaactc atcgatgaaa aaggacgcgc
     6601 cgaatacgcg caaattcgca ccaatatgaa ccgcaaatat tctgatttta atccgcaaaa
     6661 ttatggcttt aaaaattttc gtgctttaat tcagaaattt ttacccaaaa tgaaaaaatt
     6721 tgaagaagag cgagaaaaaa atatttattt tctggtgaaa aaagattatg aaaactatta
     6781 ctgatgatat taaaacttta gaacaaaatg ctataaataa aggcttagat gagcttattt
     6841 taatggaaaa cgcaggatta aatttagcta agcttattaa aaaagaagca aaaaaaattc
     6901 gcaaacaata caagataaag aaagtaaaaa tacttttttt attgggcgga ggcaataacg
     6961 ctgctgatgg cctagtagct ttaagaaatt taaagcatgc aaaagcttat aaactaggct
     7021 ttaaagaaaa tgaaattttt aaaaaacaag agcaaatttt aaaaaatttt ggttttaaat
     7081 ttgcaaaaaa agagcctaaa tttaaaaaat ttcatattat tgttgattgt atcttaggca
     7141 caggaacaaa ccgcgaagta gatgaaaaaa caaaagaaat tttagaaaag gtaaatcaaa
     7201 gtaaagcttt aaaaatagct tgtgacatac ctacaaattt gggttttact ccttgtttta
     7261 aagctgatat cacgcagtgt atgggagctt taaaagaaat tttgcttgag gattttgcta
     7321 aagaatttgt aggcaaaatc aaactcgcaa acctaggtat taatgctaaa aaatttagtc
     7381 ttgattccaa agctttttta cttgaagaaa aagatttaaa aaccatagaa agaaatacaa
     7441 gctccaataa aggaaatttc ggtcatatct atataatagc tagtgcaagt gcaggaaccc
     7501 tagcaggact tggagcttta aattttggca gtgggcttgt atccttagtc gcaaaaaaaa
     7561 gtttttcacc tcttttaatg ctaaaagaaa agattgaaaa caatgcaagt gccattgcct
     7621 taggtatggg acttgaaaat ttagatattt taaaagatga gattttgcaa aatattcctt
     7681 tggttttgga tgcaaattgc tttttaagtg aagctgtgct ttggtatcta agtagaaaag
     7741 atgtagtcat caccccacat ccaaaagaat ttataagact ttataaaatg tgttttgatg
     7801 aggatttaag tatagaagat ttgcaaagaa atcgcttttt ttatgctaaa aaatttgcac
     7861 aaaattatga ttgtgttctt gttttaaagg gtgcaaatcc tatcatcata caaaaagaaa
     7921 aaatctttgt tgtaaatctg ggaaatgaag ctttagcaaa aggcggaagt ggcgatgttt
     7981 taagcggtat gatagctacg cttttagggg taaaattcag cgctttggaa gcggctaaaa
     8041 atgcttgttt agcacacgct cttgtggcta aaaaatataa atttaacaaa aacagctttg
     8101 atgcaataaa acttataaaa ggattaaaat gcttgtaaaa ttagcggtac tttttagtgg
     8161 aaatggaagt aatttacaaa atatcttaga aaaacttcat aaaaaaacta taggtaaaaa
     8221 cacttatgaa gtcgtgcttt gtctttgcaa taaaaaagat gcttatggga tacaaagagc
     8281 taaaaacttt gaccttgaaa gcgtgatcat tgaacacaaa gattataaaa acagagaaga
     8341 atttgacgaa attttggtaa aaaaaatcaa agaaagcgga gcagatctta ctatcttggc
     8401 tggatttatg cgaattttaa gccctgtttt tacaaaaaat atcaaagcaa ttaatcttca
     8461 tccatcttta ctaccccttt ttaaaggagc tcatgctatc aaagaaagct atgaaagcga
     8521 tatgaaagta gctggagtga gtgtgcattg ggtaaatgaa gaattagatg gagggaaaat
     8581 catcgctcaa aaggcttttg aaaaacaaaa tttaaccttt gaagaatttg aagcaaaaat
     8641 tcatggccta gagcatgaaa ttttaccctt aagtgtagta gaaatttttg aaaattgtca
     8701 ttaagttaag atattttatc gctaaatttt agaaaattaa atttacttga gtgttttatc
     8761 ggtatttact tttaaaattt tttaaagcat ataaaaaatc tctaatatcg cttacttgat
     8821 ctgttaccca ttcatctaca ctcatttttt catcatcttc atcatcttca tatccctcct
     8881 catcttcatc atatccataa agtgaggatc atcataaagc tcaatttccc aatcacttaa
     8941 ctcacattct acatcatcaa tgaaattttt aagagttgca ccttcaaaat cttttttatc
     9001 gtattctaaa acagtgatta gattaggcgg taaggtaact ttatattgtt catcaacttt
     9061 taaattacca ttttccacta gatttttata ttcgtagctt aaaacattgc ctataaaagc
     9121 tcttgcttca tgttttttta agccatctat ggcacctttt aataactatc atttttaaga
     9181 tagtattcaa atatttgttg catatcttca tctaataaat ttttattttc cattgttgct
     9241 cctttaattt ttttgtaggt tttctttttc cttatccttt cttatagctt catttaataa
     9301 atcacaatat tcattacgat cttcataatc cttataaaag atattaaatt tcttttcaag
     9361 ttgatcggaa gtcattgcac ctgcagcttt taaaagtttt ctatttctag ctccttcggc
     9421 ttgatctaaa ggtgtcgtaa atagggaaca aaattaacat tagctccaag ctctattaga
     9481 agttgcacgg ttctgtaatt tcctgactct ttcactgctt caaataaggg tgtatcctga
     9541 tatttataga ttgattcaaa ctcatattct tccatatcca cattagcccc tcctttgatg
     9601 gcaagctcta gaaatttata atcattatta ctagcccaaa aatgtatagg agaccagcct
     9661 gtatcttcgc gatacacttc aaatttagct ccatgatttg ctaggtattg gataatttgg
     9721 gggtttggat ttctaacttt taggatatac ctatagatta aagcttcttt gtaaatgcta
     9781 ggattatctt ccatatatct tactacaata tatttatcat tagcttcttt gatatatttc
     9841 atatctgcaa agcgaaaatt atatttagga tcttttagac ttaagccata ctcatcaaat
     9901 aaataatcta aaatagaaaa atcattatta tttgctccac aagtgcgagc tgctctcata
     9961 actcatagcc ttaatatctt ctaatgtttt cattgttttt ccttgtaaaa atttaattat
    10021 atgttatatc aaaatattta atatttgctt tgaagttata aaattacact ttaaaaaatt
    10081 tcaaatttta aggaagctta tgttcgagtg gatttttagt gctgaaatgt ggatcgctct
    10141 agcgactttg attggcttag agattgtttt agggatagat aatatcattt ttatcgctat
    10201 tttggtagga agactcccta aggaaaaaag acaaagagca agaatttttg gtttaagttt
    10261 ggcgatgatt acgcgtttgt tattgctcct ttctttattt tggattatga aacttacaac
    10321 tccgcttttt agcgtatttt cacaagaaat ttcaggaagg gatattattt tgatcttagg
    10381 tggattattt ttgatagcaa aatccacact agaaattcat catgatatcg ataatgccgg
    10441 agaaaaaagc gatgaagagg ttttaaaaga gggagctaaa agaggatttt ttagcatatt
    10501 gatacaaatt gctgttttag atattgtttt ttcactcgac tcggttatta ctgctgtagg
    10561 tatggttaat aatatagaaa ttatgatgat tgcagtggtt gtagctgttt ttgtaatgat
    10621 gcttgcaagc aaaagtatct caaatttcgt tgatgataat ccaacgatta agattttagc
    10681 tctagcattt ttgattttag ttggtgtaac tttagttgcc gaaggtttgg attttcatat
    10741 ttcaaaaact tatgtatatt ttgctatggc tttttctttg ggtgtagaat ccatcaatat
    10801 ctatatcaaa aagaagcgct tagctcaaga aaaatcttag aaaatgatga taaaatatac
    10861 aatgatataa aaatttaaaa aggaaaaaaa tgcctaaaga tgcaaatgga acagaattaa
    10921 atgctggaga tagcgtaagc gtgataaaag atttaaaagt taaaggtgct agcactactt
    10981 taaaacgcgg aacaacgata aaaaatatca aacttacttc taaagaaaat gaaattgaag
    11041 ctaaagtaga taaatttggc gttattgtac taaagactga atttttaaag aaaatttagg
    11101 aaagaatttg cgtattttac ttattttaag ggggaattac tacgcaggac aagaagaatt
    11161 tatcaaagaa aatcgcttaa aagattacac tcttgatcta aattctttgc gtttgctttc
    11221 aggaagtgta agtaaaatcg taagtaaata taaaaattta aatctaaaaa atgatgaaga
    11281 attatataaa attttacttc aatttttaga aatgcgtatg caaaaaggtg aattttgcat
    11341 cattaacgct tataatgaaa cccttaaggt ttataaagaa ctagctaagc aatatcgcta
    11401 tgatatttat attatagatt ttaaaagctc tttagaagaa tgtcttagaa aaaacgagca
    11461 aaaagccaaa gagcgtggct atatagtctc acaatcactt ttaaaaaaaa cccatcacct
    11521 gcttgaaaga attcctaaaa aatatacgat tttaaatcct aatgattgga aaaaatgcct
    11581 ttatcaaatg cctaatctta gtaagtatag gaaaattcac cacataggcg atattcaagg
    11641 ctgctttagc atcttaaaag aatatctaca agagctcgaa gatgatgaat gctatatctt
    11701 tttaggggat tatatcgata gaggcataga aaatggcaag gtcttaaaat tcttgcttaa
    11761 aatttgtgaa agagagaatg tatatttact tgaaggaaat cacgaaagac atttgataaa
    11821 atgggccaat ggagaactat caagctctaa agaatttaac gaaaatacac tcaaagattt
    11881 tagaaaagaa aaactcacgc ctagggatgc tagaaagttt tatccttact taaaagaatg
    11941 tctgtactat aaatttcatg aaaaacaagt tttttgctcg catggcgggg taaatctttt
    12001 accttctaag gcttatcaaa taagctttat gccaagttat gattttattt atggcgtagg
    12061 aaattatgaa gagagtcaaa aagtagcaag tcagttttgt gaatttacaa aagacaatgt
    12121 ttatcaaatc tttggacata gaaaccgcac aaaattgcct gtgcaaatag aaaaaagagt
    12181 atttttgtgc gaaggtaaag tagatgatgg gggacatttg cgtatagtaa ctttagacaa
    12241 aaaaggtttt gagtgtatag aacttaaaaa taaagtttat agaaagaaat aagccaaaaa
    12301 ggcttattct tcatctttgt tggttttttt aaccacctta acacgctcta tagaattacc
    12361 atccattttt ttaacttcat agtaacaaag ctcatcttca atgcgatcac ccgctacggg
    12421 caagcgcccc agaagattaa acacatagcc acctatcgtt acttgctcta aatcctcatc
    12481 atagcttatc aaaagcattt cttcaacggt ttctatatcg caacgacctt ggaattcata
    12541 gatgttttca gcaagttttt tatagctgtc ttcctcattt tcacttttaa tctcaccgat
    12601 aatttcttcc atgatatctt ccatggttaa aattccagct gttccaccgt attcatcaat
    12661 cacaagtgca gtgtgagaac gctctttatt catcatcaca agaacttttg aaatgctaat
    12721 attttcagga actaaaatca aaggcttaac aaaagtatct aaattttcac tcttatcact
    12781 aagctcattt tgcactatat ctcgtatatg tatcatacct aaaatagtat ctttagaacc
    12841 atctatatat ggaaaacgcg tatgcttatg atcgcaaatg atttgcatat tttcagcata
    12901 agttttttgt ttatttagac aaatcatatc tttacgaggc gtcatcactt cttttgcaac
    12961 agtatctgaa aaatcaaccg cattgcggat aatttcagtt tcaaattcat ccaaaacacc
    13021 gcctttttgg ctttcacttg ctatgatttt aatctcttct tcactatgag ttaactcgct
    13081 ttctttggca ggcttgatgc caaaaagctt caaagtcatg gccgcaagaa aatcgaaaat
    13141 tttaatacaa ggcaagaaaa gtatccaaaa ccaatgaaga ggccttgcta cccaaagcac
    13201 agctttatct gcaatagcaa ttgcaatgct ttttggaaca agctcgccta aaaccacatg
    13261 caaaagagtg atgatactaa aggcgataat aaaagctata gtatggataa taactccatt
    13321 aaatccaaga tttgcaagag gaatttccaa catttttgct atagcaggct cacctatcca
    13381 accaagggct agcgaactta aagtaattcc tagctgacaa gcactaagat aggtatcaag
    13441 tcttgaagta acttctagtg cttttttagc acctactttt ttttccttaa ccatttcttc
    13501 aagttttgaa cgacgcactt taacaatact aaattcagac aaaacgaaaa agccatttaa
    13561 aagcactaaa gctagtgcaa tgacaaccat aagtatagaa tatcctgcat caaaagacgc
    13621 tgtaggtaaa gtttggttta aatctaaaac ctgactgggg tccaataaaa gctccttata
    13681 aataaaatat ttaattatac acaattaaaa gtaaaatttt agcttaaaaa tggtttttaa
    13741 gctaaaatta atttgcattg gagtttaatt taaagcatga aaatgcttaa aattctgatt
    13801 attttttgtg ctacattaac cctatctatt gtctatgctc cgcaacctat agcaccctta
    13861 ttgtctaatt attttcatgt aaatttgcac caaatttctt ggataatcag tgttacgctt
    13921 attcccttag caatcgcacc tttggtttat ggttatttac ttgaaatttt ttccttaaag
    13981 aaaattcttg ttgtttcttt gtttttatgt tctatttttg gtattattgg aaacttaaac
    14041 gataattttt atttttttct atttcttaga tttttacaag ctctttgtat acctgctata
    14101 ctgacagcac ttcttacctt gcttagtcgt ttagaaagcg acaatataca aaaaaacata
    14161 gccatttatg taggtgctac aacttttggt ggttttgttg ggagggtttt tggaagtttt
    14221 ttgagcgatc ttttttcttg gcattttgcc ttaaattttt ttagtatttt aatgatggtt
    14281 tgtgcttttt tatttttgtt ttttaaagag catcctataa gcttaaacac tcaaacttcc
    14341 ttgagggatt ttttaccctt tatcaaagaa cttagattta tggtgatatt attttgtgtt
    14401 tttactatct ttttctcttt tcaaagcata gtaagttttt taccttttca tcttaaagaa
    14461 agtataaaag atatcactca aacacaaatt ggacttgttt atttgggatt tttaaccgga
    14521 gtaataagct cactacttat aggtaaaacc atagaaattt taggctcaaa aattcgcaca
    14581 gctatatttg ggtttttggt ttttatagcg ggttgttttt gtatgatagt agggaatttt
    14641 tattttgcct tttttgctat gtttgtattt tgtagcggaa tgtttataag tcattgtata
    14701 ttttcaggga ttttaaattc gattgcggat aaaaagggct tggctaatgg aatttatttg
    14761 acattttatt atagtggggg tgctttgggt tctgtattgc caagttttta ttatgaaagt
    14821 tttggctggg aatttttatg tattttcaca gcctttttac ttttcatcgc tttgataatt
    14881 tttagcaaat ttagacattt ttataaatga tttttgtttt tatttttcgc gtattcgata
    14941 tttttttcaa attcttttaa acgcttatgt atacttctaa gttgggtgat agttgtccaa
    15001 tttgtgataa aaacactaaa agaacttctt acttgatcaa aagcattatt aatttgcatt
    15061 acaataccaa gtcctatagc tcccgcaaaa agtcctggag ccatgattaa aaatggaacg
    15121 ataactatca tttgctcaaa taaaattaac caaatattaa aatatccata gtgcaaaaaa
    15181 agtcttttat aattgaattt aagtcctgta aaaagctcta tcatggtttc atttttagcg
    15241 tattctttgc ggttatcttc agcataaaca agctcttttc taaaagctgc ttcggctttt
    15301 tgattgttgt attcaagtcc tggaagttta attcctacaa accacgatac gattaatcct
    15361 cctaaagaaa tcaaaagtgc aacataaaca agcaaaccat cgatgttttt taaaaaataa
    15421 aagctagaat tctcacttaa atttgcaaat aaagccttgc ttacaacatc gcttaaagtc
    15481 cataaaatcg gtataaaagc tacaagagtc attaaagctc ttataaaact aagtcctaag
    15541 ctttctacaa ttttagaaaa attataagta tcttcttgaa ttctttgcga acttccttct
    15601 atgttatcat ctttattttt ccaaaatttc aaataagaaa aagtcatagc ttcacgccac
    15661 ttaaaggcgt aaacactagc aaaataaata ttaatcgttg caattaaaac ataaggaata
    15721 gcaatagcta aaaatactaa aatcaaagca taaaaatcac tcgcagaata gctttctttt
    15781 tcaatcatag ccctagaatt aaaaaaatat tccaataaac tttgataata ataaagtgcg
    15841 cctttattga taaaattagc tttttggaaa ttttcttgtg ctttttgatt ggcctcttgg
    15901 attaaacttg cattgttttc aaatttctct tccgcctttt gcgttgtatt agaatctaaa
    15961 agctctattt ttggtttttg taaaacatta taaaaatcac tataccatga attgatcgca
    16021 acatttaagc ttgtttgcat atataagaaa aataaaagca aaaaaagccc caaataagcc
    16081 cataaagccc attttttact tgcaaaaaac gaagaaaaca taccaccgcc ttaatctcaa
    16141 aacgaaaatt ttaatcaatt ttatttaatc aagagtttat tttttaccta aatagtcttt
    16201 aatattgtaa tcaataggca taacaaaact gattttttca ccatctttca acatttcttt
    16261 aggtggtttt ggcaagggag aagctctttt aaataaactt aaaacttcat cattaagcac
    16321 tgcataaggg caggattttt taagctcttt acttaagaca tttccacttt catcaatgct
    16381 tacgcgaatt cttacaacac cttcttgctt ttgcattatc gcttcttgag gatatttttt
    16441 aaatttagcc aaatgagcca taagcaaggc ttgatagctt ttaatttgtt ctttagcatt
    16501 gccacttact atagtctgtg ttttatcttc attactttgt agcggagcac tgagcgattc
    16561 atttttaaat tttgaatttt cacttgcatt agctatttct ttttgggctt gattttcatc
    16621 ttgtttttct atcttttttt gagcttttaa tacagcattt ttatcttggg agttaagact
    16681 cattttttca tcttgttttt tgtttttatc ttgagaattg ctcttttttt gatcgattga
    16741 aacttctttt aattctccaa taggaagctc tgataccatc ataatggaag taaattccac
    16801 tccttgttta aaatcaacac cgcttgattt ttcttgagta tagaaagaaa aaagaaaaaa
    16861 cattaatacc aaagcatgca atattaaact cgacaccaat ccaaaaatca taccagattt
    16921 cataattaat ccaccttctt acttgaaagg gctatttttc catagccatt ctcttttaat
    16981 ttttgcatta cttgcataat atcttcatac tttacacttt tatcaatatg aaaataaata
    17041 atttcttctt tattaccttt ggtttttata tctaaagcat ttgcaagatt ttctaggctt
    17101 aatttatcat cattaatagc caaagtatta tcggtattta aataaagtat gatgggattt
    17161 ttaagcttat cctctgcttg ctgcgaactc ttaggcagtt ctatcttaat agaacttgta
    17221 ataagaggag taacagccat aaaaacaatc aataatacaa gcataatatc tataaaagga
    17281 gttatattga tctcacttaa ctcctcttct ttgtgagcca tttcagtttt tatcattaaa
    17341 ataactccta tgaaaaagta tataaacaaa atttgcaagc tcgtctaaat ggtgcataag
    17401 ttttaaattt tttcttgtaa gataattata aaaaagcacc gcaggaatag cagctaccaa
    17461 gccaaaagct gtagcaaaca aggcttcagc tatacccggt gcaacgactg ctaaggaggc
    17521 attaccaaga ttggctatac ctataaatgc attcataatc ccccaaactg ttccaaaaag
    17581 ccctataaaa ggtgcactag cgcctatgct tgcaagcaag ctcaagccat ttttgcttgc
    17641 tgtgatttgt tttgagatgg tattttgcaa gcgcaattct atacgctctt ttatatgatc
    17701 atttttatat tcactttttt caagctcatc ttgaatttct aaagataaaa cacctgcaaa
    17761 accttttgtc tgatctaatt cattgagatt ttttaattct tttatcttgt gtatagagaa
    17821 gtctaaattt ttcttcataa aataaaattg cataagctta gaaataaaaa ccgcccatgc
    17881 taaaacagaa aataaaacca atatataaat aacacctttt accacctcat cagcgttttg
    17941 ataaagacta gaaagagaaa gctctatttt tggtacttcg gcttctattt taggagaatc
    18001 aaaagataaa tttgtatctg ttacattcac ttcagcattt aaatttaaca ataaaaaaca
    18061 aaataaaaat atttttttta gcatttatat atttccttaa tatttatatt caaaacttac
    18121 tataaaggtg cgaccgcgag cagagttgtt ataaatataa ataggatcaa ataaccctcc
    18181 agcattttgg ttttcccctg tgttgtaaga gtaaagtgca tccatatagt ttttgtcaaa
    18241 taaattttgt acttctgctt tgattgtaaa gtttttcaaa attttataat ttgcataaag
    18301 atcaacgata gttggtattt ttggcaattc atctgtagtt ttaagcggag ccatagcatc
    18361 aggattgctt ggatcatcat ctaagctacc tacaggaact attctctttg cttttcctgt
    18421 gtatttagca agagctccta gagttagctt ttcttcaaat aatcttacac ccatatcaag
    18481 attagcataa tgctctggaa gttgggcaaa ttgactttgg cctgattgtg cacccccaaa
    18541 ttctaaagat tctgtatctg aaaatttatg cttggatttt tgataagtat aagatagtat
    18601 agaataaaaa aatcccgtat cgtatttaaa ttcaagttca accccgtgaa atttagcttt
    18661 ttcatcatca tttaattgca taagaaagat agcatcgtca gctttttgcc aatatcttct
    18721 attgtaaata taatttttta ccttagtatc ataataaagc attttaaaac ctaaagtatc
    18781 gctatcattt aaaatttcat gtgtaaaaga attaaaaccg atttgataag tatctgcact
    18841 ttcagccttt aaaaatgtgt tcatattatg ctcaaaactt gcatcatggg tgaaaaaata
    18901 ctcttggaca tttggaattc tatggctttt agaataagaa ataaaaggat taaaaagcgg
    18961 atggatatct gctgaaagca tcaaagaata attaaaatta ttgtaatcct tttctaaatt
    19021 tgtcgcattt tttggctggc aataaggatt agccatgcta caaattcctt tatatccact
    19081 taattgcgca ttagtccaat tgatattaga atttaaggtg aaaattcctt ttgtaaaact
    19141 cgtatccaaa taaagggttt tgatatcttg ttttccttta ggataaaaac tggttaaaat
    19201 ataaggcaaa agcactctat cttgtggaaa atcattacta taatgattgt ttaaaatatt
    19261 aaccccataa gtaaaataca aatttgaatc ttgtgaaaat tctttattca tggtattact
    19321 aagatcaaaa gttaccgctc gatttttagt cttaactcca ctcatatcgt gataacccca
    19381 agtgctgcct tgattatact tttgctttcc atcattgtaa gcaaataaaa actttagatc
    19441 caaaagatta gaatcaggat ttaaacgata atcaatttga taggtatcat ttgtaatctt
    19501 tctacccgca agattgttct tataagctct atagtttaaa atcgcctcac taatatcgga
    19561 tttgtattct actttaaaga gttgacttct aggctgatta taaagattat ttgggtttat
    19621 aggtgctgct aaattatcat ctggaatgcc atcatcatca gtgtcaaatg ggggtttttg
    19681 atcgcctata tagcctccac ctccaatttt ataattttga gaaacatttt gcccactata
    19741 agcaaataaa atgcctaaat tagcattatt ttctaacata gtttttcctg ctatagcacc
    19801 cataaaatta ggtcctatag cattgctacc ataagagtat tttcccaaaa aaccaaaaac
    19861 tcttccttct tgtactatat catctacgcc tatagttcta aaattagccg aacccattaa
    19921 agcattagct ccatttgccc cgctaaaagt tccacgatta acatctaagg cgactaaaaa
    19981 atttttatct attggggctg taaaacttga agttccaatt tgcccatgaa agctatcatc
    20041 acttgcagaa ccaaaaaaag tttgagttac accatcaatt tgtgtattta ctcttccaag
    20101 tcctgtcata ccgcgaatat ttactgaaac tcccccttgt gcttgatcta cttgagtata
    20161 agcaccagga acactacgca ctatagaatc tatactttga gtgtttgaat ttaaattatc
    20221 tcttgtgctt gttgctccgg gagttacaaa gggtttttca tcgtttttga tttttgagcc
    20281 tgaaatttca agactatcaa attctaattc ttcggaaaaa gcaaaattag caaaacataa
    20341 acccataaca caaaataaac ttaatttttt cattattctc ctttaataat aaataaaagt
    20401 ataatcactg tcttttaaat ctctttctcc atagtttaaa ttcaccacga ctattttttt
    20461 actgctttta aaatcttgta tatgtaaagg aattcctatt ttcttgcttg tatgatagct
    20521 cccagctaac aataaaatct tgtttgtatg atgaaccaat acatcagcca ttcgcctgtc
    20581 tttaaattgt tgaatttcta ctaatttatc tagtaattct ttattttctt gaggatttag
    20641 cttatgactt aaggatatag tgtcaaaaat ttgttttttt acttcatttg tggttgaaac
    20701 ataacctttt aaaggctgaa ctccattata aatacttgta atttctgagc gtgaaagatt
    20761 tgcgcctaat atttttgctc ttgaataaaa aactgcatta acaaactgat cataatcttt
    20821 ccatttccag cccttatccc aatttaacgc attagtaagt tcattggttt taatggtttt
    20881 tttattttta aaagctttat ctaagtgatt ttgctctgtg cttgctagca tttctaaagc
    20941 tacatcaaaa cttatatttt gagaacttaa atttccttct aaggcattaa aaatcataac
    21001 ttggcttatc ttgtgctttg cttcatcgtg tttttcgcca agcagtatca catctgcttt
    21061 taataattct acaatcatat cttcaaaaga aatctttttt tgagtatgag tatcaagtat
    21121 ataaaaatct ttgttttctt gaagtggaga tggtttttgc aaaacagcac aagcacttaa
    21181 cataaagct
//
LOCUS       DBBXRO010000015        20999 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.015, whole genome shotgun sequence.
ACCESSION   DBBXRO010000015 DBBXRO010000000
VERSION     DBBXRO010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20999
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.015"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1359)
                     /locus_tag="ACJFEZ_000425"
     CDS             complement(<1..1359)
                     /locus_tag="ACJFEZ_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HGG0916568.1"
                     /translation="MLGNIDLSSLNIPLSYPFAFLIAVAIVLLLCSGFWKFHRTFYMA
                     TSSLSLIVSVFLILNNIAVQGLEAKGFLGTLNNDIVSLYASLVILCFSFLYLLMQKEE
                     NQGEFYSLFLFMVAGLLLMVSSSNLILIFIGLESSSLALYTLIAMRGSNNAISSAIKY
                     FSVAAVGSGFFVMASALIYIRTGTLDLGLKLALDKDPMLLGAGVMIFVLCAIKLSLAP
                     FHFWLKDVYSSAHVNLVAFISVVPKIAMFVVVIRLFSFLNHLGFENILNVLAVFSMLV
                     AALAALSQKDVKKMFAYSSIVHSSFVLAACIPLLNAADDVLNSIFVYWVLFGFANYGV
                     FLILSTFKGSSFEEFNALLFKKPLIALSLSFCILSLAGIPPFGAFWGKVMVLKTLIVA
                     DYWYLALFMALASLIMLYAYLKLVIHALFVKTQAKVSEHLNFIQSFILALCTLISVFA
                     LFL"
     gene            complement(1349..2839)
                     /locus_tag="ACJFEZ_000426"
     CDS             complement(1349..2839)
                     /locus_tag="ACJFEZ_000426"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HGG0916569.1"
                     /translation="MLNYLIFFPLIAAFVTLVLNRGGIKVFSVIASLMVLGLNIKIWQ
                     DYLNGINLEYQLPFKVVNFMSYHIGADSIALILMLLSSLMIFLSFLFLKIEQKAMVSC
                     IFFLEFAIMGLFSSLDGLLFYVFWEFSLLPLLYIMGVYGKDYRAGIKFFIYAFAGSIL
                     MLLALIYQAYATYKLLNIFTFDIEIWKNNASAMSFNEQILLFGAFFIAFAIKAPLFPF
                     HTWAPKVYANSPILVSMMLVAFKMAPFGFLRFCLPLFPDASVYFMPLVVALCIVSIVY
                     NALIAYRASNLKELIAYSSISHLGVMILGIFSFNALGLSGAVFYMFAHGIVTGALFLM
                     AELLYKKYGTLEISYYHSLANKAPLFTIFFTLILLASISLPLTISFVGEFLILLGVAK
                     LNLLYALLAGLVIILGAIYMLHVFRKMFFMQKESQLETCSLHAREILSLIPIVVLIFY
                     LGIAPKIFLDPLNKDADFIVEKMKERAIDDQTIRFLNHLEGENNVR"
     gene            complement(2841..4631)
                     /gene="nuoL"
                     /locus_tag="ACJFEZ_000427"
     CDS             complement(2841..4631)
                     /gene="nuoL"
                     /locus_tag="ACJFEZ_000427"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HGG0916570.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSERKIFVAYVCSLLIGISAF
                     CSLYLLFNNQAFNVSLFEWFIGLSFGFNIDAISLTMMSVVGVVATCVHFYSIFYMAHD
                     KDFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNNTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYIQAGTLKYNEVFAIAQNLDHNALVLIASCLFIGAMGK
                     SAQFPLHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRAGEIYSLVPEVSYFIALLG
                     AFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLVTHAFFKSLL
                     FLGAGNVMHAMDDQLDIKKMGGLFKSLKITAIFMTIGSLALAGIYPLAGFFSKDLILG
                     YSFIAHYHGIFLILLISAFLTAFYSFRLLMLVFFTPSRHDKHPHEASKIALFAMSPLV
                     VLAIIAGLFEHSFFEYLSTQLIFIDAQNKLVMICASVAAVLGVVLAIIAYKASWFKDS
                     IEQNKIHKLLSNDYFIPKFYHEFIVSKYESLCAVLKHCDTYIFDAIVDKIAYYCNLIS
                     QKIIMSNSLNLMLRFLVAGFVILLILVWVV"
     gene            complement(4634..4927)
                     /gene="nuoK"
                     /locus_tag="ACJFEZ_000428"
     CDS             complement(4634..4927)
                     /gene="nuoK"
                     /locus_tag="ACJFEZ_000428"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HGG0916571.1"
                     /translation="MVEKYFFIAIAMFIVGLIGILKRQNLIMLFISSEILLNAANLAL
                     VAASKMHQDLNGQVFALFVMGVAACEVAVGVAFCVLWYRRKGTLELKSLKEEV"
     gene            complement(4927..5442)
                     /locus_tag="ACJFEZ_000429"
     CDS             complement(4927..5442)
                     /locus_tag="ACJFEZ_000429"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HGG0916572.1"
                     /translation="MIEILAFTFFSVVVLGFFLVAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDSSKEFKEKLRAKKSFFLLVILSAVL
                     LLFMLLGFKHQNIAGDLALSDPNLFDYNKQLAFAIFSKYLLAFEFIAILLLIALICAI
                     VLTHKELTKER"
     gene            complement(5439..6104)
                     /gene="nuoI"
                     /locus_tag="ACJFEZ_000430"
     CDS             complement(5439..6104)
                     /gene="nuoI"
                     /locus_tag="ACJFEZ_000430"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HGG0916573.1"
                     /translation="MKNYYLTDEKRKTPTSTWQKISQALKRSVKLELFVGLWVVMREM
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENARKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDADLLVKKTPNYYEVLQEREKNLCTDEECTLPNLAPQG
                     EVK"
     gene            complement(6114..7112)
                     /gene="nuoH"
                     /locus_tag="ACJFEZ_000431"
     CDS             complement(6114..7112)
                     /gene="nuoH"
                     /locus_tag="ACJFEZ_000431"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HGG0916574.1"
                     /translation="MSDFAFFALEALIKCIIVIAIFATLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKLIFAIAPLIAAICAFVSLAAIPMLP
                     EFTLFGRTIQPLIADINVALLFVIGTSGLCFYAIFLGGLASNNKWSIIGAARGLVAII
                     SYESVGALALIAIVMLVGSFSLIDINNYQSDGFFSWLIFKQPLAFALFVIALFIETNR
                     TPLCLTENEADIVAGYGTEYSGLRWGMFFIGEYASMIAGAILITLLFLGGFNDFYFIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMRMCYLILIPLAVLNLLITAFAVLI"
     gene            complement(7105..9567)
                     /locus_tag="ACJFEZ_000432"
     CDS             complement(7105..9567)
                     /locus_tag="ACJFEZ_000432"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HGG0916575.1"
                     /translation="MTIKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNIQRHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDMLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDVKQSGISNQKAKIYRVSNDFAFA
                     SLNKAARFAFDTQNETSKDEKAFKELVELFEKNEIRNIKFNSFITNEEALILQNFKKK
                     FGLNLINNEALKFKDFLEEFISNGGEFYNATTQDITKSDFLVVAGTLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPIEDAGIAKYSKNFISHTHKSGDEEQILYFLLQKFTQDENIK
                     ANLAEFFVNENKEIEESINEEVIEQVVEKDEEGNEISKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLIIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDESMQEGKTLGYNERGDFSFSYEEHANLASSSLNQQEGTFLNYD
                     KKVVPTNAALEFDGYFLNDLANALGFDEEYTINYTKRLPINKGFSPLEFDSLDNFYTN
                     GGECKRGYDLNLECHKKSAKNEFIAPHLQNLTLQEDEILLYSANPSYQFGRFSNRASA
                     TNEAIFLGVSQNLAKEKNLQDKDLVKLKIKDKELSLSVRIDKDIKNGAFLPYFDEKID
                     TLSFFDERFIVANLEKLGASHE"
     gene            complement(9564..10256)
                     /locus_tag="ACJFEZ_000433"
     CDS             complement(9564..10256)
                     /locus_tag="ACJFEZ_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916576.1"
                     /translation="MSYERALCFVDMLSLKNKILCEKIQGENIYISCLEDKNLNAKFY
                     KCEIASLSYVLALLCKMSEMDNFQDLDEGYLSAESCLGEEEASEILDFLENAKYLIVD
                     ENINSYKDSENIKYFLNFLSQKYKLKILDSNEKECDFKNAKLSTLKELDSYDGLVLFR
                     ANLKDDNLHCSKQFLQIAKCKDKSEVEVLAKDFSLKTTLCLDENLQGTIAFLNYDQQG
                     FDFTPIRIKEAK"
     gene            complement(10253..10480)
                     /locus_tag="ACJFEZ_000434"
     CDS             complement(10253..10480)
                     /locus_tag="ACJFEZ_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HGG0916577.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKESV"
     gene            complement(10477..11703)
                     /gene="nuoD"
                     /locus_tag="ACJFEZ_000435"
     CDS             complement(10477..11703)
                     /gene="nuoD"
                     /locus_tag="ACJFEZ_000435"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HGG0916578.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPTIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRIASHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPEGFLNELLAFCDKFPKDIADYEALLDDNRIWRLRTENV
                     GVVSKEQAMNWGCTGVMLRGSGVRYDIRKEEPYLLYNEIDFGIPYATQGDSYARYKVY
                     MQEFRESLKILRQCAALYKDTPPEILANHPEYVSSSKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(11705..12499)
                     /locus_tag="ACJFEZ_000436"
     CDS             complement(11705..12499)
                     /locus_tag="ACJFEZ_000436"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HGG0916579.1"
                     /translation="MMRKYSDKKNAQLQNYYKDRFYHAPHTQKLDVNESAFKQDYEVL
                     KTEVDIINSFIELDFWVIEIKKEDNVKTLQMLHTLGYLNFTEASAIDFVADKNGFEVF
                     YQLLNLEKRLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWYGHPLLKTYPLQGDEFAQWYEIDKIFGKEYREVVGVEQRDPGFADDKDTLNF
                     ARLYHEVPKGGSRKEVSFKQEYQEDGGVAFVKKVKRDEAKILEKRR"
     gene            complement(12496..12999)
                     /locus_tag="ACJFEZ_000437"
     CDS             complement(12496..12999)
                     /locus_tag="ACJFEZ_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HGG0916580.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            complement(12981..13370)
                     /locus_tag="ACJFEZ_000438"
     CDS             complement(12981..13370)
                     /locus_tag="ACJFEZ_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HGG0916581.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIVALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFILLLGVGFLYAYKKGAFAWQSIK"
     gene            complement(13488..14153)
                     /locus_tag="ACJFEZ_000439"
     CDS             complement(13488..14153)
                     /locus_tag="ACJFEZ_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HGG0916582.1"
                     /translation="MLEVKNLGKFYEFKKHWYLKKEKHLIFENINFSLKENENLMILG
                     QSGAGKSTLARILCFLENPSFGEIIYKNLNPHSLDKTKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIR
                     ALILNPKLLILDEITSSLDMKNSKEILKFLYHYQQENLISYIFITHQDGFFVNFKCKK
                     MKL"
     gene            complement(14146..14856)
                     /locus_tag="ACJFEZ_000440"
     CDS             complement(14146..14856)
                     /locus_tag="ACJFEZ_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HGG0916583.1"
                     /translation="MKVRNLNISSKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEVLFLE
                     KNQAQLFRVDEFLRIYHA"
     gene            complement(14853..15608)
                     /locus_tag="ACJFEZ_000441"
     CDS             complement(14853..15608)
                     /locus_tag="ACJFEZ_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916584.1"
                     /translation="MFLILSALFAPLLAPFDVLESHLNHLHQAPNLTYYLGTDFLGRD
                     VFSRLLFALRISLFIGICSSFLSIFFALFYLFLARCFFYTFWMRILDLFLALPAFLLM
                     MFFQSFVGVNMFLMIFLIALVHWPFIARIVESELKRLENLDFYKASIVLGRTKFRAFF
                     KDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGTLLSESSKAVFIGA
                     WWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(15634..16578)
                     /locus_tag="ACJFEZ_000442"
     CDS             complement(15634..16578)
                     /locus_tag="ACJFEZ_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916585.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLYFSKGSVAYANKVNSQSKELV
                     QRIEANLGLDKPLLEQYQIWLFKALKGDLGVSFLSGESVLKLIKERMANTLILSLSAL
                     VLLFLLSVFLALLGHYYKESFIDKLITFLAFNFFALPPFVLALFFVLIFGIFWQVLPI
                     TGTSDIGLEDDFFNRLKHLILPVLVLVLSHLALFLRIARNFINETFSQIFVQNLYARA
                     LREKDIYFLVLRYSLSPIIAYFGGSALSFMMGTYVVESVFAYEGLGSLLFESILFKDF
                     PMALALIFFSVLLAAFFTFLSDVFAWILNPRLKRLKFV"
     gene            complement(16579..18117)
                     /locus_tag="ACJFEZ_000443"
     CDS             complement(16579..18117)
                     /locus_tag="ACJFEZ_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0916586.1"
                     /translation="MLRWFILLFLLFFNLEAKIPKDTLIVAVENEISRINPAYSEDHD
                     AVINLVFSGLTRFDEHMSLKPDLAASWNVSKDGLSYDIFLREDVLWHDGVKFSADDVK
                     FSLEAFKNPKNNSSVYVNFEDIKSIEILNPYHLKITLSKPFPAFLDALSIGMLPKHLL
                     SDKDLNTASFNQNPIGTGPYKFVKWKKGEYVEFKANENFYLTKVKTPRLIIKHIFDPS
                     VASVELKNGKIDAALIDVSLLNIFKKDENFKILRERSADYRALMFNLENEFLKDIQIR
                     KALNYAVDKQSIVKNLLHDYGFVANHPLERSWADSKAFKTYEYNPKKAQDLILALGFK
                     KNDEGIFEKDGKILDFEIWTMSNDPLRVSLAGILQSEFKKIGVIAKVVAKPAGSFDYS
                     KVDSFLVGWGSPLDPDFHTFRVFESSQDSALNNEGWNFGHYHDKKVDIALQKARNTLN
                     LEERKKYYKEFIDALYENPPFIFLTYLDFALVYNAKLEGVKARNLGHHGVGFTWNIYE
                     WSKK"
     gene            complement(18221..20998)
                     /locus_tag="ACJFEZ_000444"
     CDS             complement(18221..20998)
                     /locus_tag="ACJFEZ_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding and (Fe-S)-binding domain-containing
                     protein"
                     /protein_id="HGG0916587.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAS
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLVGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFISSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFSDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDNLFN
                     PDVIISDDKDIYKKNIKQASWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSRKRACNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRIDKINENVGLYIMCAARKLGLNENIIKLAKLCTNGKVLIDNDTYC
                     CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEKQFN"
BASE COUNT         7751 a         4038 c         2591 g         6619 t
ORIGIN      
        1 caaaaataaa gcaaatacac taatcaaagt acaaagagct aaaataaaac tctgaataaa
       61 atttaaatgc tccgaaactt tagcttgagt ttttacaaat aaagcatgga tgactagctt
      121 taaatacgca taaagcataa taagcgatgc taaagccata aaaagagcta aataccaata
      181 atcagcgaca attaaagttt ttaacaccat caccttaccc caaaaagctc caaatggcgg
      241 aattccagct aatgaaagta tacaaaagct aagcgatagt gcaatcaaag gctttttaaa
      301 caacaaagca ttaaattctt caaacgaact tcccttaaag gtactaagaa tcaaaaacac
      361 accataatta gcaaaaccaa aaagcaccca ataaacaaat atagaattta aaacatcatc
      421 ggccgcattt aacaaaggta tacatgctgc taaaacaaaa ctagaatgca ctatagaact
      481 ataagcaaac atctttttga catctttttg actcaatgcg gctaaagctg caacaagcat
      541 tgaaaataca gccaatacat ttaaaatatt ttcaaatcct aaatgattta aaaagctaaa
      601 aagtctgata actacaacaa acattgctat tttaggaaca acagagataa aagcgaccaa
      661 atttacatgt gctgaagaat acacatcttt taaccaaaaa tggaaaggag ctaaagaaag
      721 tttgatagca cataaaacaa aaatcataac tcctgcgcct aaaagcatag gatctttatc
      781 aagagccaat tttaaaccca aatccaaagt gcctgttcta atataaatca aagccgacgc
      841 cataacaaaa aagcccgagc ctactgccgc aacgctaaaa tatttaatag cacttgaaat
      901 agcattatta cttccgcgca tagcaataag tgtataaaga gccaaggaag agctttcaag
      961 tcctatgaaa atcaagatca aatttgagct tgaaaccata agtaaaagcc ccgctaccat
     1021 aaataaaaac aaactataaa attcgccttg attttcttct ttttgcatca aaagatataa
     1081 aaacgaaaaa cataaaataa ccaaagaagc atacaaagaa acaatatcat tatttaaagt
     1141 tcctaaaaat ccttttgctt ctaagccttg cacagcgata ttatttaaaa ttaaaaaaac
     1201 actcacaatc aaagataaag agctagtagc catataaaaa gttcgatgaa atttccaaaa
     1261 acccgaacaa agcaaaagca cgatagccac agcaatcaaa aatgcaaaag gataggataa
     1321 agggatattt aagctgctta aatcgatatt acctaacatt attttcccct tctaaatgat
     1381 ttaaaaatcg aatggtttga tcatcaatag ctctttcttt cattttttca acgataaaat
     1441 ccgcatcttt atttaaagga tctaaaaaaa tctttggtgc tatacccaaa taaaaaatta
     1501 aaactactat aggtatcaaa gaaagaattt ctcttgcgtg caaggagcaa gtttcaagct
     1561 gactttcttt ttgcataaaa aacatttttc taaatacatg aagcatataa atagcaccta
     1621 aaataatcac aagtcctgcc aaaagagcat aaagtaaatt aagttttgca acacctaaaa
     1681 gaattaaaaa ttctccaaca aaagatattg tcagtggtaa agatatactt gcaagtaaaa
     1741 tcaaagtaaa gaaaatagta aataaaggcg ctttattggc taaagaatga taataagaaa
     1801 tttcaagtgt accgtatttt ttatataaaa gttcagccat taaaaacaag gctcctgtaa
     1861 caataccatg tgcaaacata taaaatactg ctccactaag tcccaaagca ttaaaagaaa
     1921 aaatacctaa aatcataacc ccaaggtgag aaatcgaact ataagcgatc aattctttta
     1981 aatttgaagc acggtaagca attagagcat tataaactat acttactata cacaaagcta
     2041 ccactaaagg cataaaatac acacttgcat caggaaaaag tggcaagcaa aagcgtaaaa
     2101 atccaaaagg agccatttta aatgctacaa gcatcataga aactaaaata ggcgaatttg
     2161 cataaacctt tggtgcccaa gtatgaaaag ggaaaagcgg tgctttaata gcaaaggcga
     2221 taaaaaatgc tccaaaaagt aaaatttgtt cattaaaact catagccgaa gcattatttt
     2281 tccaaatttc tatatcaaaa gtgaaaatat ttaaaagttt gtaggtcgca taggcttgat
     2341 aaattaaagc taaaagcatt aaaatcgaac ccgcaaaggc ataaataaaa aatttaatcc
     2401 ctgctctata atctttacca tatactccca taatataaag caaaggcaaa agtgaaaatt
     2461 cccaaaatac ataaaagagt aagccatcaa gcgaagaaaa taatcccata atcgcaaatt
     2521 ctaaaaagaa tatgcaagat accattgctt tttgctcaat ctttaaaaat aaaaaactta
     2581 aaaatatcat caaggagctt aaaagcatta aaatcaaagc tatgctatca gcgcctatat
     2641 gataactcat gaaattgact accttgaaag gaagttgata ttcaaggttt attccattta
     2701 aataatcttg ccaaatcttg atatttaaac caagcaccat taaactcgct atgacgctaa
     2761 aaacttttat acccccacga ttcaaaacaa gagttacaaa agcggcaatt aaaggaaaaa
     2821 agattagata atttaacatt ttacaccacc cataccaaaa taagcaaaat cacaaatcct
     2881 gccaccaaaa atctaagcat taaattaaga ctattactca taattatttt ttgcgaaatc
     2941 aaattacaat aataagcaat tttgtccact atagcatcaa aaatataagt gtcacaatgt
     3001 tttaaaactg cacacaagct ttcgtatttt gaaactataa attcatgata aaacttaggg
     3061 ataaaataat cattgctcaa aagtttatgg attttatttt gctctatgct atctttaaac
     3121 caagaagcct tataggctat aatggctaaa actacaccca aaacagccgc tacgctcgca
     3181 caaatcatta caagtttatt ttgagcatcg ataaaaatga gttgagtgct aagatattcg
     3241 aaaaaactat gctcaaacaa gcctgcgata atagctaaaa ccaccaaagg actcatagca
     3301 aaaagggcta ttttacttgc ttcatgtgga tgtttatcgt gtctagaagg agtaaaaaat
     3361 accaacatta aaagtctaaa actataaaaa gcggttaaaa aggctgaaat taaaagaatt
     3421 aagaaaattc catgataatg agcgataaaa gaataaccca aaatcaaatc ttttgagaaa
     3481 aagcctgcta aaggataaat tcctgccaaa gccaaagaac ctatagtcat aaaaatagca
     3541 gtgattttta aagatttaaa aagcccaccc atttttttaa tatctaattg atcatccatt
     3601 gcatgcataa catttccagc gcctaagaaa agtaaagatt taaaaaaagc atgggttact
     3661 aagtgaaata aagctatacc ataagctcca agtcctgcag ccacaaacat atatccaagc
     3721 tgcgataaag tagaataagc aataatgcgt tttaaatccc tagccaccaa agccatggaa
     3781 gctgcaaaaa tagccacaaa tgctcctaat aaagcgataa aataagaaac ctcaggcact
     3841 aaagagtaaa tttctcctgc acgaataacc aaataaaccc ccgcagttac catggtagca
     3901 gcatggatta aggctgaaac aggcgtaggt cctgccattg catctgcaag ccatgtatga
     3961 agaggaaatt gcgcggattt tcccatagct ccgataaata aacaacttgc aatcaaaacc
     4021 aaagcattat gatctaaatt ttgtgctatg gcaaatactt cattgtattt taaagtgcct
     4081 gcttggatat aaagccaaaa aattcccaaa agcataccca aatccgcaat acgattcata
     4141 ataaaagctt cattagctgc aaaagaatag gtattgtttt tataccaaaa accgatcaaa
     4201 agccaagagc aaagccctac cccttcccag cctacaaaaa gtcctaaaaa attatcactc
     4261 atcactaaaa aaagcattga aaatacaaaa agccctaaat aagcaaaaaa tttattaaaa
     4321 tctttatcat gagccatata aaaaatacta taaaaatgca cacaagttgc tacaacaccc
     4381 acaacactca tcatagtaag agaaatagcg tctatgttaa atccaaagct taaacctata
     4441 aaccactcaa ataaacttac attaaaagct tgattgttaa aaagtagata caaagaacaa
     4501 aatgcactta taccaatcaa taaagaacat acataagcga caaaaatttt tctttcactt
     4561 aaagcaaaac aacttgcaaa taaaaaagct acaaaagggc taaaaagaga aatcaaagct
     4621 aaattttgca ttatcaaacc tcctctttta ggctctttaa ttctaaagtg ccttttcttc
     4681 tataccaaag tacgcaaaat gctacaccca cagccacttc gcaagcagcc acacccatca
     4741 caaaaagagc aaaaacttgt ccatttaaat cctgatgcat cttagaagct gcaacaagag
     4801 ctaaatttgc tgcattgagt aaaatttcac ttgaaataaa aagcataatg agattttgtc
     4861 tttttaaaat accgattaat cctacaataa acattgcaat agctataaaa aaatactttt
     4921 ctaccattat ctttcctttg taagctcttt atgtgtaagc acgattgcac aaattaaagc
     4981 gattaaaagc aaaatagcta taaattcaaa agctaaaaga tattttgaaa aaatagcaaa
     5041 agcaagttgc ttattataat cgaataaatt tggatcgctt aaagctaaat cacccgcgat
     5101 attttggtgc ttaaagccta aaagcataaa caaaagcaaa acagcactta aaatcactaa
     5161 aagaaaaaaa ctcttcttag ctcttaattt ttctttaaat tctttggaac tatcaaaaaa
     5221 catcatagca aagctataaa gcccaagcac agccccgcta taaactatga tttgtatcac
     5281 tcctaaaaac tctgcatcaa gtaaaaaata aaaacccgat aaaaaaacca ttccaccggc
     5341 taaagcagaa agagaataaa gcatattttt actcaaaacc gctactaaga aaaaacctaa
     5401 aaccactaca ctaaaaaatg taaaagctaa aatttctatc atttaacttc tccttgtgga
     5461 gctaaatttg gcaatgtgca ttcttcatca gtgcataaat ttttttctct ttcttgtaaa
     5521 acttcataat aatttggagt ttttttcaca agtaaatccg catcctttct aaggctaccc
     5581 gcaccctcaa attcaacttg atttttaagc ttatcaatag gagttaaaaa atcttgttta
     5641 tagccaaaat aagatctttg ttcggctgca ttttcatact ctgtgccatg aactatagca
     5701 agttcaggac aaacttcagc acaaaaacca caataaatac aacgccccaa attaatacta
     5761 taatttccca cctttttacg agcattttca tctaaagaag tttccatcct gatacaatta
     5821 ctgatgcaaa tcttctcaca aagcccacat cctatgcatc tttcattttc actttctata
     5881 aaacgcataa gacggtgtac agcgcggtag cgattgtcaa gctttacctt ttcaaaggga
     5941 tattttatgg ttgcgctatt gtttcttttt agcatttcac gcataaccac ccacaatccc
     6001 acaaaaagct ctaatttcac acttcttttt aaagcttgtg aaatcttctg ccaagtgcta
     6061 gtaggagtct ttcttttttc atcagttaaa taataatttt tcatcacaaa ctcctatata
     6121 agtactgcaa aggcagtgat taaaagattt aaaaccgcca aaggaattaa aattaaataa
     6181 cacattctca tcacttgatc aggacgaagt tgtggaaaag ctgctctagc ccaaaaatac
     6241 caaaagaaga taaaacttga ttttactatc atcataatcc agccaggtat aaaataaaag
     6301 tcattaaaac cgcctaaaaa taaaagcgta atcaaaatcg ctcctgctat catagaagca
     6361 tattctccta tgaaaaacat accccatctc aaacccgaat actccgtacc ataacccgca
     6421 acgatgtcgg cttcattttc agttaaacaa agtggagttc tattggtttc gataaataaa
     6481 gcaatcacaa aaagtgcaaa agctaaaggc tgtttaaaaa taagccatga aaaaaatcca
     6541 tcgctttgat aattgttaat atctatcaaa gaaaaagatc ctacaagcat cacaatagct
     6601 attaaagcaa gggctcctac actctcataa gaaatgatag ctacaagccc tcttgcagca
     6661 cctatgattg accatttatt gttacttgca aggccaccta aaaatatagc ataaaaacaa
     6721 agccccgaag ttcctataac aaaaagcaaa gccacattaa tatcagcaat caaaggctgt
     6781 atagtgcgtc caaataatgt aaattcagga agcataggaa tagccgctaa agaaacaaaa
     6841 gcacaaatag ctgcaatcaa aggcgctata gcaaaaatca atttttgtga atttgaaggt
     6901 atgatatctt ctttagtaaa aagttttatc atatctgcta caagctgaat aagtccaaaa
     6961 ggtcctacca tatcaggccc aatgcgtctt tgaaaataag ccaaaacctt tctttctgca
     7021 taagttgcaa gtcctgctaa ggtagcaaaa attgcaatca ctataataca cttaattaaa
     7081 gcctctaaag caaaaaaagc aaaatcactc atgactcgct cctaattttt ctaaatttgc
     7141 cacaataaat ctttcatcaa aaaaacttag cgtgtcgatt ttttcgtcaa aataaggtaa
     7201 aaaagcccca ttttttatgt ctttatctat acgcacgcta agacttaatt ccttatcttt
     7261 aatcttaagt tttacaagat ctttatcttg caagtttttt tcttttgcca aattctgact
     7321 cactcctaaa aaaatcgctt cattggttgc acttgcacga tttgaaaatc taccaaattg
     7381 ataactagga tttgcactgt aaagcaaaat ttcatcttct tgcaatgtta aattttgcaa
     7441 atggggagct ataaattcat ttttagcact ttttttatgg cattctaaat ttaaatcata
     7501 tcctcttttg cattctccac cattggtata aaaattatca agactatcaa attccaaagg
     7561 agaaaaacct ttgttaatag gaagtctttt ggtgtaattg atcgtatatt cctcatcaaa
     7621 acctaaagca ttagccaaat catttaaaaa atatccatca aattctaaag ctgcattggt
     7681 tggaactact tttttatcgt aatttaaaaa agtaccctct tgctgattta aacttgagct
     7741 agccaaatta gcatgttctt cataagaaaa gctaaaatct cctctttcgt tgtagcctaa
     7801 agtcttgcct tcttgcatac tctcatctaa atcacaaatc atagcaacgc ctaaggtatt
     7861 tgtatgtgta ggatttaaaa agactttaaa aggagttgta ttttggatca aagctaataa
     7921 tttagccaat tttttagcat ttttatgaaa ataaaaatca cttcctataa tcaaagtaaa
     7981 attagccttt ttaagcaata aatcttctaa tttatcctca tctataccca aatttttagc
     8041 aaaaacagag cgttgtactt ctatgatttt tttcactttt ttaggcacga cttttttcac
     8101 ttctttagaa atttcattac cctcttcatc tttttctaca acttgctcta taacttcttc
     8161 attaatactt tcttctattt ctttattttc atttacaaaa aattcagcta aatttgcttt
     8221 tatattttca tcttgagtga atttttgaag taagaaatat aaaatttgct cctcatctcc
     8281 gcttttgtga gtatgtgaaa tgaaattttt agaatacttt gcaatgcctg catcttctat
     8341 aggatgaaaa taaagtcccg agcctttatt catcactaag gcattgttga ttttatagct
     8401 aagcgtaggc gcatcgtatc ttaaaagcgt tcctgcaacg actaaaaaat cactttttgt
     8461 gatatcttgg gttgtagcat tataaaactc accgccatta cttataaatt cttccaaaaa
     8521 gtctttaaat tttaaagctt cgttattgat aagatttaag ccgaatttct ttttgaaatt
     8581 ttgcaaaatc aaagcttctt cgtttgtgat aaagctattg aatttaatat ttctaatctc
     8641 atttttttca aaaagttcta caagctcttt aaaagctttt tcatccttac ttgtctcatt
     8701 ttgcgtatca aaagcaaatc ttgcagcctt atttaaactc gcaaaagcaa aatcattgct
     8761 tacgcgataa attttagctt tttgattgct aataccgctt tgtttgacat cataatacat
     8821 aagctcacaa tcacttgaat gcggatttga agcaggaatt ctttttaact cccaaatatt
     8881 agaagtatat tggaatttag aacctatcaa agcccctgtt ggacatacac tagtgcactc
     8941 tccacaaaaa gaacaatcaa gcatatctcc atttgcaggg cctatcaaac tcttttgaaa
     9001 tttcgtccaa atcgcataag cgtctttacc catactttct ttaaagctat tatctacact
     9061 atcacctccg cgaggcactg tttttaaagc actttcgccg attttatcct tacaaactgt
     9121 gatacaacgc tcacacacta tacaaagtgc aggatcgtaa ttaatcattc cccaatgttt
     9181 atgcggttta tgtgtgtctt taatccaatg tctttggata tttacacggc ttttatgagt
     9241 gaaattttgc aattcacact cgcctgattt atcgcaaact ccgcattcta aaggatggtt
     9301 gatacaataa gcttgcatga tctcatttct ttcatcccaa agattttgta aatcactttc
     9361 tacaaccata ccctcttttg ctttagtatt gcaagaatac acttttttac catcagcctc
     9421 taccatacac atacgacaag ccaaagtcgg gctacagcct gaaagatagc aaattgctgg
     9481 gataaaaata tcatttcttc ttgctatatt taaaatatat tcgccttctt caaaggcgca
     9541 atctatgcca tttattttaa ttgtcatttt gcttccttta tgcgaattgg agtaaaatca
     9601 aaaccttgtt gatcataatt taaaaaggct atagtgcctt gcaaattttc atccaaacaa
     9661 agtgtggttt taagactaaa atccttagcc aaaacttcga cttcactttt atctttgcat
     9721 tttgcaattt gtaaaaactg cttagaacaa tgcaaattat catcctttaa atttgctcta
     9781 aaaagcacca aaccatcata gctatcgagc tcttttaaag tactcaattt tgcattttta
     9841 aaatcacatt ctttttcatt actgtctaaa attttaagtt tgtatttttg gcttagaaaa
     9901 tttagaaaat atttaatatt ttcactatct ttgtaagaat taatattttc atctacaatt
     9961 aagtattttg cattttctaa aaaatctaaa atttcactcg cctcttcttc accaagacaa
    10021 gattctgcac tcaaatatcc ctcatctaag tcttgaaaat tatccatttc gctcatctta
    10081 caaagcaaag ctaaaacata actcaaactt gcaatttcac atttataaaa tttcgcattt
    10141 aaattcttat cttcaaggca agaaatataa atattttcac cttgaatttt ttcacataaa
    10201 attttatttt taagacttag catatccaca aaacaaagcg ctctttcata actcatacgc
    10261 tttccttttt aatcactata gtccaatcca cttgattaaa tttcaaggaa tttaaaagct
    10321 cacagccttg ttcttttaca aaagaaaaac ttttttcaac aggagaaaaa tcgccgattt
    10381 caaaaagcac cactaaaacc tcaccttgtt ttgcttcttt tatgatttgt gctaaatctt
    10441 caaaaagctc tttgcttttt cttaaatcta ctcttctcat cgatctatct cacctaaaac
    10501 tatatttaca tttcccataa tggccacaac atcagccaaa taagtcccca caagcatttc
    10561 ttcaaaaaat gcacaatgcc aataactagg cgttctagcc tttaaacgat aaggtcttcc
    10621 tgtaccatcg ctatggataa aaaatccaag ctcaccctta ggactttcag ttggcacata
    10681 aacttcacct ttagggggtt ttaaaccttg agtgattaaa acaaaatgct gcattaaaga
    10741 ataattttgc gttaaaattt gctcttttga actgctgaca tattcaggat ggttggctaa
    10801 aatttcaggt ggagtatctt tgtaaagcgc ggcacattgt ctaagtattt taagactttc
    10861 gcgaaattct tgcatataaa ctttatatct agcataagaa tctccttgcg ttgcataagg
    10921 tatgccaaag tctatttcat tataaagcaa ataaggctct tccttgcgta tatcatatct
    10981 tacgccactt cctcttaaca tcacccctgt acagccccaa ttcattgctt gttctttgct
    11041 tacaacacct acattttcag ttcttaggcg ccaaattcta ttatcatcta ataaagcttc
    11101 ataatcagcg atatctttag gaaatttatc gcaaaatgcc aaaagctcat ttaaaaaacc
    11161 ttcaggcaaa tcaagcataa ctccacctat tctcatagaa gaatgtgtaa gtcttgctcc
    11221 acaatatttt tctatcaaat ccaaaacata ctcgcgttct ctaaagcaat acaaaaatac
    11281 actcatcgcc ccaatatcaa gtgcgtgagt tgcaagccaa agcaaatgcg atgcgatgcg
    11341 attaagctct aaaagtatca ttcttatcac tgctgcacgg cgtggaattt ctaagccgca
    11401 aagcttttca acagctgcac aataagcata attattagcc gacgcagcga tataatccat
    11461 cctatcagtt gtcgggataa actcttgata tatcatattt tcagccattt tttccatacc
    11521 acgatgcata tagcctatgg tagggcgcgc ttttacaacc tgctctccat caagttctaa
    11581 aataaggcgt aaatttccat gtgctgaagg gtgctgtggc cctaaattaa taatcatttt
    11641 tgagtcttct tgctcaaaag ctatattttc ataataaggt tttaacttgc taggaatttg
    11701 cattttaacg ccttttctct aaaatttttg cttcgtcgcg tttgactttt tttacaaaag
    11761 caacgcctcc atcttcttga tactcttgtt taaaagatac ctcttttcta gatccacctt
    11821 ttggtacttc atgatacaat cttgcaaaat tgagtgtatc tttatcatct gcaaaacctg
    11881 gatctctttg ctcaactcct acgacttcgc gatattcttt accaaaaatt ttatcgatct
    11941 cataccactg cgcaaattca tctccttgca aaggataggt ttttaaaaga ggatgtccat
    12001 accaatcatc aggcattaaa atacgcttta aattaggatg atttatgata aaaattccaa
    12061 acatatcata aatttctctt tcgctccaat ttgcgccctt aaaaacatgt gctacgcttt
    12121 gcaaacgctc ttttacgcct acaaaagttt ttattctcac tcttaatctt ttttctaaat
    12181 ttaaaagctg gtaaaatact tcaaaaccat ttttatcggc tacaaaatca atagcacttg
    12241 cttctgtaaa atttaaatat cctaaggtat gaagcatttg cagggtttta acattgtctt
    12301 cttttttgat ttctatcacc caaaaatcaa gttctataaa agaatttata atatcaactt
    12361 ctgtttttaa aacctcataa tcttgcttaa atgcactctc attgacatcc aatttttgag
    12421 tatggggtgc atgataaaac ctatctttat aataattttg aagctgggca ttttttttat
    12481 cgctatattt tctcatcaca ccaacctttt tggagctatt ttgcgactag ctttttcttt
    12541 tcgaattttt ttctgtaaaa tcatcaaggc aaactgaaag ctttcagggc gtggggcaca
    12601 gcctggtaca taaatatcaa ctggaatgat cctatctaca ccttgaacgg tagaataagt
    12661 attaaacata ccccctgtat ttgcacaact tcccatagaa atcacccatt taggatcggg
    12721 catttgatca tatagccttc ttgtaaattc agcgtgcttc ttacataaag tccctgcgat
    12781 aatcatcact tcactatggc gtggagaagc tctaaaaatc gttccaaatc tatcaaaatc
    12841 atatcttgat ccccctgctg ccatcatctc gatcgcgcaa caggcgagtc cgtaggataa
    12901 agcccacaaa gaattacttc tcccccattg aacaagctta tctacgcttg ttaaaaccac
    12961 tggcaaacca ctggcataat ttacttgatg ctctgccatg caaacgctcc ttttttataa
    13021 gcatataaaa atccaactcc taaaagtaaa ataaaaacaa atacttctaa aagcccaaac
    13081 catcctaaat ctttaaaaat caaagcccaa ggaaataaaa acaccacttc tatatctaaa
    13141 agaataaaaa tcaaagctac gatgaagaat tgggaattaa tcttattagc ttgttttacc
    13201 ggaattggac cacattcata aattccaagt cctagttttt tacgattttt tgcagcaaaa
    13261 ttattgccaa ttttagaagc taaaaaaacc aatccaaaaa aaataacact agctagcact
    13321 aacattaaaa atataccgaa ataaggatgc gaagcatcaa tgtgggacat tttttctcct
    13381 ttttttaaac actttgaatc acttcacaac aaaaaataaa atttacacac tttgttctat
    13441 tttactctaa actttctata ttgaaactta ataagaataa atattgttta aagtttcatt
    13501 tttttacact taaagttaac aaaaaaccca tcttgatgag tgataaaaat ataagaaatc
    13561 aaattttctt gctgataatg gtataaaaat tttaagattt cttttgaatt tttcatatca
    13621 agactagaag taatttcatc taaaatcaac aatttaggat ttaaaatcaa agcacggata
    13681 agacctacac gcgtggcttc tccaccgctt aactcatagg gtttttgttc taaaatttgc
    13741 ttttttagac taaaaaaatc aaaaaattct aaaatcaagt catcattctt ttgtaaatta
    13801 aaattttcca aaccatcttg tataagattt ttgatttttt tataagggtt taaagccatt
    13861 ttttgatctt gaaagcaata ctgaatttgc tttcttaaaa gtctttgttt tgttttatca
    13921 agactatggg gatttaaatt tttatatata atttctccaa aacttggatt ttctaaaaaa
    13981 caaagtattc tagctaaagt gctttttcct gcgccacttt gccctaaaat catcaaattt
    14041 tcattctctt ttaaagaaaa attgatattt tcaaaaatca aatgtttttc tttttttaaa
    14101 taccaatgct ttttaaactc ataaaattta cctaaatttt taacttcaag catgataaat
    14161 ccttaaaaat tcatccactc taaaaagttg cgcttgattt ttttctaaaa aaagaacctc
    14221 atctgctaaa gaattgacta aatttaaatc atgtgtgata caaactaagg ctgtagtatt
    14281 ttttaattct tttaaaatcg atataatctt agaagcgttt tctttatcca aagaagctgt
    14341 gatttcatca caaattaaaa tttggggttg atttaataat gccaaagcta ggctcaccct
    14401 tcttgccata cccaaactta attcattagc ataagaatgc cacaaacgat caagattttc
    14461 aaatcctaat ttttgaaaat aagaaaaagc gtaatctttt ctttcttttt gttttaattt
    14521 tgtatgagtt tttaaaacaa gatgacataa atttccaata tccaaataag gataaagact
    14581 aagctctgca tcttgcaaaa caagtgccac cttagaacga aaatttctaa gttcttcttt
    14641 attaaaatta aaaatacaag aattatgaaa acttaattca tcaaaactta ttgtgaaatt
    14701 agaatctaaa agtcttacca aagcttttcc taacaaactt ttgcccactc cactttgtcc
    14761 tagtatcatt aaagttttac ctgtttttat atctaaatta atatccttaa gcaataaatt
    14821 atttttcgaa ctaatattta aatttcttac cttcaagatc ttatacccca aattttttgt
    14881 aaaaaattac ccaaccataa aagaggtaaa aacaacaaaa gcaagcttaa aagtggaaaa
    14941 agtatcatcc accaagcgcc tataaaaact gcttttgaag attcactcaa aagagtacct
    15001 aaagttggaa tttcaaatcc taaacccagc ccaaaaaaac tcaaagtcgc ttctgtggct
    15061 atagcatgaa cgatattaaa tataaaaagt gtaaaaatca gtgtttttaa agcaggtatt
    15121 aaatctttaa aaaaagctct gaatttagtc cttcctaaca ctatacttgc tttataaaag
    15181 tctaaatttt ctagtctttt taactcgctt tctacaatcc ttgctataaa aggccaatgc
    15241 actaaagcga tgagaaaaat cattaaaaac atatttacac ccacaaaact ttgaaaaaac
    15301 atcatcaaca aaaaagcagg caaagctaaa aaaagatcta aaattcgcat ccaaaaagta
    15361 taaaaaaaac atcttgctaa aaataaataa aaaagagcaa aaaatataga caaaaaagaa
    15421 ctacaaattc ctataaataa agaaattctc aaagcaaaaa gcaaacgcga aaatacatct
    15481 ctacctaaaa aatcagtccc tagataataa gttaaattag gagcttggtg caaatgattt
    15541 aaatgacttt ctaaaacatc aaaaggagcc agtaaaggcg caaacaaagc acttaaaatc
    15601 aaaaacatta aaggcgtaag aaaaagtatt atcttaaaca aatttcaacc tttttaatct
    15661 tggatttaaa atccaagcaa aaacatcgct taaaaatgta aaaaaagcag caagtaaaac
    15721 actaaaaaat atcaaagcca aagccatagg aaaatcctta aaaagaatgc tttcaaaaag
    15781 caaactccca agcccctcat aagcaaaaac actctcaacc acataagttc ccatcataaa
    15841 acttaaagca ctgcctccaa aataagctat aatagggctt aaagaatatc ttaaaaccaa
    15901 aaaataaata tctttttccc ttaaggctct agcgtataaa ttttgaacaa aaatttgcga
    15961 aaaagtttca ttgataaaat ttctagctat gcgtaaaaac aaagctaaat gcgataaaac
    16021 aagcactaaa acaggcaaaa taagatgttt taagcggtta aaaaaatcat cttcaagacc
    16081 tatatcgctc gtccctgtta taggtaaaac ctgccaaaaa attccaaaaa tcaaaacaaa
    16141 aaataaagcc aaaacaaaag gcggtaaagc aaaaaagtta aaggctagaa aagtgatcaa
    16201 tttatctata aaactttctt tataataatg gcccaaaaga gcaagaaaaa cactgagtaa
    16261 aaacaaaagc actaaggcac tcaggcttaa aatcaaggta tttgccatcc tttctttaat
    16321 gagctttaaa acactttccc cacttaaaaa agaaacacct aaatcccctt ttaaagcctt
    16381 aaaaagccaa atttgatact gctctagcaa gggcttatct agccctaaat tggcttctat
    16441 tctttgaact aattccttgc tttgagaatt gactttattt gcatacgcta cactaccttt
    16501 actaaaataa agcaaaacaa agcataaaaa agtgctaaaa aatgcgataa aaatactaaa
    16561 aactaagcgt tttagcactt attttttact ccactcataa atattccaag taaaacctac
    16621 tccatgatgg cctaaatttc ttgctttaac accctcaagt ttagcattat aaactaaggc
    16681 aaaatcaaga taagttagaa aaataaaagg aggattttca tacaaagcat caataaattc
    16741 tttataatac tttttgcgtt cttccaaatt taaagtattt ctagcttttt gcaaggctat
    16801 atctaccttt ttatcatgat aatgcccaaa attccaaccc tcattattta aagcactatc
    16861 ttgcgaactt tcaaacactc taaaggtatg aaaatcagga tctaaaggac ttccccaacc
    16921 cactaaaaaa ctatctactt tagaataatc aaaactgccc gcaggctttg ctacaacctt
    16981 agctataacc cctatttttt taaactcgct ttgcaaaatt cctgccaaac tcacccttag
    17041 aggatcatta ctcatagtcc aaatttcaaa gtctaaaatc ttgccatctt tttcaaaaat
    17101 accctcatcg tttttcttaa aacctaaagc caaaatcaaa tcttgggctt ttttaggatt
    17161 gtattcataa gttttaaaag ctttagaatc cgcccaagaa cgctctaaag gatgattggc
    17221 tacaaaacca taatcatgca aaagattttt gactatactt tgcttatcaa cagcataatt
    17281 taaagccttt cttatttgaa tatcttttaa aaattcattc tctaaattaa acattaaagc
    17341 tctataatca gcagatcttt cacgcaaaat tttaaaattt tcatcctttt taaaaatatt
    17401 caataaagaa acatcaatca aagccgcatc aattttgcca tttttaagct ctacgcttgc
    17461 aaccgaagga tcaaaaatat gtttgatgat aagtcttggg gtttttactt ttgtaagata
    17521 aaaattctca ttagctttaa actctacata ttcgcccttt ttccatttta caaatttata
    17581 aggacctgtg cctatgggat tttgattaaa agaagcagta tttaagtctt tatcactaag
    17641 taaatgttta ggaagcattc ctatacttaa agcatctaaa aatgcaggaa aaggtttaga
    17701 aagcgtgatt ttaagatgat aaggatttaa aatttctata cttttaatat cttcaaaatt
    17761 cacataaact gaagaattat ttttaggatt tttaaaagct tcaagactga atttaacatc
    17821 atcggcacta aatttcactc catcgtgcca caaaacatct tcacgcaaaa agatatcata
    17881 gctaagtcca tccttgctaa cattccacga cgcagctaaa tcaggcttta agctcatatg
    17941 ctcatcaaaa cgcgtaagtc ctgaaaatac aagattaatc accgcatcat gatcttcgct
    18001 atatgcagga tttatccttg aaatttcatt ttccacagct acgattaaag tatcttttgg
    18061 aattttagcc tcaagattga aaaacaataa aaatagtaaa ataaaccatc taagcactta
    18121 taactcctca aatttaaaat taaaaaaatt ataaaataaa aaataagaag ccacaagccc
    18181 tataggggga taatttgctt taaattatgg attttattta tcaattaaat tgcttctcac
    18241 tgcattcatc caataaatac gctatatgct gccaagatat acccgtagca tcgcttaatc
    18301 ctatctcgca agtgcttgat gtactaaacc cgcgcttaat atttgttttg gcataaaatt
    18361 ttttaaagcc ttttgtagca ctaatattta attgaggctt gaaaaagccc ttgtatccag
    18421 caaacccaca acaataggta tcattatcta ttaatacttt tccattcgtg catagctttg
    18481 caagcttgat tatattttca tttaaaccaa gctttctagc agcacacatg atatataatc
    18541 ctacattctc attgatttta tcaatgcgta acttaggagc aataaatttt aataaatact
    18601 cgcttaaatc ataaatttca tactttgaat gatcgctaat taacttagca ctacaagcac
    18661 tatgatctaa cactatgggc gagtctatat tgcttaaaaa atcattgatt ttttgtatat
    18721 ttttatcttg gatatcttga aaattctcat aagccttacc acaacataaa tcattgggtg
    18781 cataaataat gcctatattt gcttttttac acaagctttc aaatacttct tgcaaacttc
    18841 ttttatcatg cattttttca tttggtttaa agcttttatt aagacagctt gtaaaataaa
    18901 ccacattgca agctctttta cgacttttta actcataatc attcacctta ggcaaatacg
    18961 ccctagttct tggtataatg ctaagaaaat tgcttgcttt ttcgagctta ttatcaagac
    19021 ttaaattatc aaatttattt gcgatactta atgaaaattt agcaattttt agagtttttt
    19081 catgattttt atatgctaga tttcctaaaa ttttagatat aaatcctata ttattttttc
    19141 tatattttaa tgaaaaatca gcaaaattaa tccccaaagg acatgaaaaa gagcacaccc
    19201 cacaagcagc acaagagctg tctactaaat gattgtaata ttttttaata tcctttaatt
    19261 ttgcttttga ctcatcatca tttaagcttt caaggcgttt gatctctcgt aagatcgcaa
    19321 ttctttgtct tggagtaatt gtatattcat ttgatggaca aaatctttcg caaaatccac
    19381 attccataca ggtatttaat ttctcatcaa tccaactggc ttgtttgata tttttcttat
    19441 aaatatcttt atcatcgcta atgattacat cgggattaaa taaattatcc ttatcaaaga
    19501 tacttttgat ttttttatta atcaaataag cttgcttacc ccactctacc tccacaaaag
    19561 gtgccaccat acgccctgtg ccgtgttcag cttttatact tccaccataa gaagctacta
    19621 tattagacat ttctttaact agatttgaaa aattatcaaa ttcaagctta ttgtttaaat
    19681 ccggtgtgat aataaaatgg atattgcctg ctaatgcatg gccaaaaatg attccattat
    19741 cactaaaacc atatttataa aacaattctt gaatgctttt aattccatca gctaaatcct
    19801 cgatattaaa acacacatct tcagtaatta ccgttgagcc tgcctttcta agactagctg
    19861 ctataggcaa gagtgctttt ctaatcttcc accataaatc atattcggcc ttattcttac
    19921 taaaatatga cttataagct agtttggaaa tttcttttat tttatttata ttttcatcaa
    19981 gcttaagctc attactatgc tcactttgga tcaatacaca agtattaccc tctttaatat
    20041 cagctaaaat atctcttaac tcatcataag ttgatgcagc ttttaaactt gcatagtcca
    20101 ttatttcagc agaacttata aaatcaactt tagcaaattc ttttatagtg tttgcagcat
    20161 tattgatatt atcaaaaaac aataaagcac aggccttaaa ttccaaatca tccaaaacag
    20221 caagcttaac ttcgcttaca aatcccaaag tcccttcaga gccaacaagt aagtgtgcta
    20281 aaatgtctat ttcatcatca taatcaacaa aggcattaag gctataacct gtggtgtttt
    20341 tgattttaaa ttttttgatt attaaatctt ttaattcttt attagcatta atctcttctt
    20401 tgatctctct aagttcatta attaattttt tattttcatc tttaaatcga gccacactta
    20461 aagcatcgct ggtatcaagc atactaccat ttgccaaaat caccctaata cttcttaagg
    20521 ttttatagct attatcctta gttccacagc acattccgct tgagttgtta tttataatcc
    20581 ctccaattaa agctgaattt atagtagctg gatcaggtcc tatttttttc ttcaaaaaag
    20641 caagactttc attagcatga atgcctacta caccacatcc taaagtaatt tcgctagcgt
    20701 ctttgttaat ttttattttt ttaaaggcaa atttaatcac tacaagcact ccatcgcaag
    20761 agctttgtcc acttaaactt gtacctgctg ctctaaatgt tataggagtt ttataagtat
    20821 ttgctaattg aataatttgc ttaatttcat cttcattttt agcaataatc actatttttg
    20881 gaatataaaa ataacatgac gcatcaatgc cataagcata acatctagca taatcattaa
    20941 agattctatc cttaaaaata tacttagcct cattataaaa agctttaaaa tttgccata
//
LOCUS       DBBXRO010000016        19915 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.016, whole genome shotgun sequence.
ACCESSION   DBBXRO010000016 DBBXRO010000000
VERSION     DBBXRO010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19915
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.016"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            35..1126
                     /gene="lpxB"
                     /locus_tag="ACJFEZ_000445"
     CDS             35..1126
                     /gene="lpxB"
                     /locus_tag="ACJFEZ_000445"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HGG0916588.1"
                     /translation="MKNLLVCALEPSANLHLKEVLKAYKEEFGEFKLDGIYDENLCKE
                     FALNSTPLYSSHEFSAMGFVEILPLIFKAKKAIKELVNLTLNQTIDAVLCIDSPAFNI
                     PFAKALKKANSKTKRIYYILPQVWAWKKGRIPIIESHFDVLASILPFDEQFFSKSIYV
                     GHPLLDEIKDFKNENDIKILLSKNESEKTIAFLPGSRRSEIKRLMPVFRELSRKFEGE
                     KILCVPPFNLERLEIYGDVKDFKIQSNTPQVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKTIDIFIARLFVKLKHIGLANIFCDFAGKEALNPEFLQDEVNVLNLYEAYNKYD
                     YKAFFDKVHFLKEYLKFGSAKNLAKILNQ"
     gene            1144..1629
                     /gene="greA"
                     /locus_tag="ACJFEZ_000446"
     CDS             1144..1629
                     /gene="greA"
                     /locus_tag="ACJFEZ_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HGG0916589.1"
                     /translation="MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINYEPLK
                     F"
     gene            1639..2397
                     /locus_tag="ACJFEZ_000447"
     CDS             1639..2397
                     /locus_tag="ACJFEZ_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012662069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HGG0916590.1"
                     /translation="MLLQNGAILIADAHENDKRRGFWEFLQALKRSEITTPQLILMGD
                     IFDLLIGEISATHEFAKPYIKLLEELALKMEIIYLEGNHDFNLARFFQRVKIFNLQEQ
                     PLKLNLHTSKGKNTDFKNSFITLAHGDIFLSPPLQFALKSLRNHYLLVFLNFLNQISF
                     NSISNKILKNQNKKNLFYKIENFKNLAKERYKKYENLGFWVCEGHYHQNLILDEKDVK
                     YFNLASFAYERSFFVVECCQEIKFREQKLRGQNV"
     gene            2390..3346
                     /locus_tag="ACJFEZ_000448"
     CDS             2390..3346
                     /locus_tag="ACJFEZ_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HGG0916591.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYSPKTDIDFSKIEKFSGSALILDDSMTARKRVKEMMQQMGFQVIEAKDGVEGL
                     NKLEELSQVYGENLSSVLKIIVSDVEMPQMDGFHFAARIKEDARFKDIPIVFNSSLSN
                     EFMNEKGVHEAGGESYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            3350..5644
                     /locus_tag="ACJFEZ_000449"
     CDS             3350..5644
                     /locus_tag="ACJFEZ_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HGG0916592.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELETNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPNGVENETPVEAPQKEEPAPTPEPEVDV
                     NQLSDSEVEAEIERLLKARKAEDQARRAQKKQNTAASTTSKPAASTPKAENMEKKVPA
                     SGGGGGGMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFLEELNQ
                     VVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGEETELD
                     KSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVVEITDD
                     GKGLDANSLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGRGVGMD
                     VVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLASVLET
                     VRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVAESKLG
                     IIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKEIKVDI
                     KAQIESSAKKPKEKPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIK
                     SGDHDIDAILIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGM
                     TEYITKPYSPEYLENVVRKNLKLG"
     gene            5649..6170
                     /locus_tag="ACJFEZ_000450"
     CDS             5649..6170
                     /locus_tag="ACJFEZ_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HGG0916593.1"
                     /translation="MSNEKLEQILQKQQTQIAGPVGDQKEDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFNLGSSKMTPQTRYI
                     VLRGESNGSGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            6170..6793
                     /gene="serB"
                     /locus_tag="ACJFEZ_000451"
     CDS             6170..6793
                     /gene="serB"
                     /locus_tag="ACJFEZ_000451"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HGG0916594.1"
                     /translation="MIKLCVFDFDSTLMDGETIDILAKAYDKEKEVVDITHRAMAGEL
                     DFFESLQERVSFLKGMPYDLVLKIGQDLPLMNGAYELIEFLNSKNIFVVIFSGGFHEG
                     IDPAMKKLKVNLGFANYLHHKNNTLSGLVGGEMMFSNSKGLMLQRLKNFLNLQTHEVM
                     CVGDGANDIAMFNESGLKVAFCAKEILRSKADICVDNKDLKEIIKVI"
     gene            6795..7781
                     /locus_tag="ACJFEZ_000452"
     CDS             6795..7781
                     /locus_tag="ACJFEZ_000452"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HGG0916595.1"
                     /translation="MKKFSLWCDFIENSFLDDDFLNLLSRGVNGATSNPAIFKNAILN
                     SPIYKEKIAKLKGKKAKEIYEELAIADIQKAADKLAPLYHTGNDGFISLEIDPRFYDN
                     TSLSLGEAKKLYSAIGKDNVMIKVPATNASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLIEFRKNNIALQGKNTHLRTPQAVISIFVSRFDRLLNSKAKEQNRIGILNA
                     NLAYNNIISKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSINTAPLDAINAFKTE
                     IEFKKPLMNFEIYTQLNAIISQNEREKACDELLKDGLEQFCIAFEEILQALN"
     gene            complement(7778..8200)
                     /locus_tag="ACJFEZ_000453"
     CDS             complement(7778..8200)
                     /locus_tag="ACJFEZ_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HGG0916596.1"
                     /translation="MIYLAQTDTTAGFLSKNLEEINALKGRAKDQPCLITSAKFDELK
                     KIVRVPNQFKNWVRRAKKTTFIYPNNQAVRIVKDCKHAQFLEKMGCFYSSSANKHGQK
                     FDELWARSVADVVVDEIFVENTPSKIIKLHRKKLKKIR"
     gene            complement(8197..11466)
                     /gene="carB"
                     /locus_tag="ACJFEZ_000454"
     CDS             complement(8197..11466)
                     /gene="carB"
                     /locus_tag="ACJFEZ_000454"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HGG0916597.1"
                     /translation="MPKRTDIKNILLIGSGPIVIGQACEFDYSGTQAAKTLKEQGYRV
                     VLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANAALALSPIHEILIEESLLGWKEYEMEV
                     IRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAVNPTNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAIGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPHFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERNLSGFDRVKFEDKNDLIFKIRNANEKRLLYVAQAFREGFDVKELYELCKI
                     DPWFLSQIKEIVDFEEQIDMDILHNKTLLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNEARDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDLGVKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRGVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVNDESELRLYMQ
                     EAVDVSDKSPVLIDQYLDNATEIDVDAISDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEQIVQKTADIALNLGVVGLLNIQFAIYNNELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQRNLKEALKFYDAFGVVNFDNAILRPKLSKYISVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQISSFNHLPESGVVFISLKEKDKKYA
                     KKLASEYSKLGFKLMATSGTCKEIVENGFECELVHKISEGRPNVEDKLKNGEIQLVIN
                     TSDSHTFAGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQNQSYLEVKSLQEYLK
                     A"
     gene            11573..11770
                     /locus_tag="ACJFEZ_000455"
     CDS             11573..11770
                     /locus_tag="ACJFEZ_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916598.1"
                     /translation="MKKIKISVFLIFFCQFSVLANNLPQNIKENLGINQFLDESLKEI
                     LNQPLKEKFALTPKGEYFFRE"
     gene            11862..12165
                     /locus_tag="ACJFEZ_000456"
                     /pseudo
     CDS             11862..12165
                     /locus_tag="ACJFEZ_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778059.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            12141..12479
                     /locus_tag="ACJFEZ_000457"
     CDS             12141..12479
                     /locus_tag="ACJFEZ_000457"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916599.1"
                     /translation="MYACGQGVEKDLIKAKELSSKACEKDTKLCFAQGWVELFNQNDI
                     LAQKLFYKSCQAGYYTDCNMAVDKNSKDQAMQLYLIKITQKIVKINVKTQAINNLLLA
                     IKHLLFLKKF"
     gene            complement(12516..13409)
                     /locus_tag="ACJFEZ_000458"
     CDS             complement(12516..13409)
                     /locus_tag="ACJFEZ_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HGG0916600.1"
                     /translation="MLKNPKFQAFFFAFLAAIFNAFVGIFSVFLFKKGFMSSEVAFYK
                     CFVASVILFAILIYMRKLGALLVFIKQKIFTLLLLAFFGFFMLYHFESAAYTSMSVAN
                     VVFVLFGVGMIITFICEALDVKRFFHLNELLAMVFALLGLWMIFLAEGGTLENFTHLK
                     GLVNAILAGIGYALFLFFTRKLKLGFGLVPLCALLFIGSLYLSIPLFGANLNLNFSLE
                     SLILLLALAFLPTIGGFYCTTRALSLAKSNSVQLIELSEPLFAMLFGSLFLAQSISFL
                     QILGGVFILFAIFVHEFKLKL"
     gene            complement(13403..14344)
                     /locus_tag="ACJFEZ_000459"
     CDS             complement(13403..14344)
                     /locus_tag="ACJFEZ_000459"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HGG0916601.1"
                     /translation="MLFEKTILKELKVLYKLDNYHGIFAVLWDYLQIILTIAISCFMH
                     NIFMYLFAVLFIGTRQRALATILHESAHRILAKNRKLNDFLGKYPSGYLIFQTFEKYR
                     QSHVIKHHGFLGIENKDPDYDFYIQSKLFASRSLKEFIFRHLILPLFLGKTFDFISYL
                     IRNRLGDFKDKEIKYLILFWIAIFGICFYVNVLDILLMYWFVPLLTSFPMVGHFIEMA
                     EHFPIIKNKREIEKSWNRFGNKIELFFTGLHKENYHLIHHLFANIPFWNLDKAHNILC
                     KNEEYRLLNSNMGGIFSSSNKASSLWKKIIKKELKIC"
     gene            complement(14409..15863)
                     /gene="prpD"
                     /locus_tag="ACJFEZ_000460"
     CDS             complement(14409..15863)
                     /gene="prpD"
                     /locus_tag="ACJFEZ_000460"
                     /EC_number="4.2.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047547 - 2-methylcitrate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019679 - propionate metabolic process,
                     methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate dehydratase"
                     /protein_id="HGG0916602.1"
                     /translation="MSDMGILEAKRPEFDELLTKIAKYADEFEITSDLALETARYCLM
                     DTIGCGLLALKYPACTKLLGPSVEGAEFRPLGAKVFGTSYQLEPIRGAFNVGAMVRWL
                     DFNDTWLAAEWGHPSDNLGAIWAVADYVSRKNISEGKEPLKVKCVLKAMIKAHEIQGV
                     LALENCFNKVGMDHVLLVRIASTAVAAKLLGCDFEEIRNAISHAFIDGGALRTYRHAP
                     NTGSRKSWAAGDASSRGVDLALKAKTGEMGYPSALSAKFWGYEDVKMKGQKLTIPQEF
                     GSYVMENVLFKISFPAEFHAQTAVEAALALHDEVKDRLEQIEKIIITTQESGHRIINK
                     VGELANPADRDHCIQYMVAVPLIFGRLNADDYEDSVASDERIDALRAKMQVEVDDRYT
                     KEYLESDKRSIANAVQVFFKDGTSTKKVEVEYPIGHKRRRSEGIPLLIAKFKANLAAR
                     LSPKQCEKIMQICEDQKSLEQMNFNEFSDLFWLG"
     gene            complement(15873..17000)
                     /locus_tag="ACJFEZ_000461"
     CDS             complement(15873..17000)
                     /locus_tag="ACJFEZ_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HGG0916603.1"
                     /translation="MSISEAAKKTGGLAGVIAGQSAICTCGLGNGLNYYGYSIEELAQ
                     NAEFEEIAYLLQFGELPNAKELENYKEKIIAQRALSENLKSVLRAIPKEVHPMNLMQA
                     AVAALGALEGENEDFSDQDEKIIRLLGILPSVLCYWHHYVNFGKEIDFDSNQTNIAGY
                     FLEKLKLEAPKEDFIKAMQCSLILYAEHEFNASTFTARICASTKSDIFSAVAAAIGAL
                     RGPLHGGANEAAMHLIESFKSVEDAIEGVNKKLENKELLMGFGHRVYGLGGDPRNALI
                     KVWSKHLGGDDLLFKISEAIEALMKEKRPSLPPNADFYSASAYHFMGIPTEYFTPIFI
                     MSRVSGWCAHIKEQRANNKLIRPSSEYIGVEPRKFVKIQDR"
     gene            complement(16997..17872)
                     /gene="prpB"
                     /locus_tag="ACJFEZ_000462"
     CDS             complement(16997..17872)
                     /gene="prpB"
                     /locus_tag="ACJFEZ_000462"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046421 - methylisocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HGG0916604.1"
                     /translation="MSAGKKFKELVKTSKPLTIVGAVNAYSALQATKIGHKALYLSGS
                     GVASASYGLPDLGIIALEEVCIDVRRICSRVDTPLLVDADTGFGGAFNIARTIKELIR
                     AGAAATHIEDQVAQKRCGHRPNKELVSTEEMCDRIKAAVDAKIDPDFVIMARTDAHAI
                     EGQQKAIERALAYVEAGAEMVFAEAITSLEEYEEFVKNVKVPILANITEFGKTPYFTK
                     EELNRAGVSMVLYPLSANRAMNKAAVQVYESILKNGHQKDVLEIMQTREELYEMLDYY
                     SYEQKLDELFKRGAK"
     gene            complement(17872..19779)
                     /locus_tag="ACJFEZ_000463"
     CDS             complement(17872..19779)
                     /locus_tag="ACJFEZ_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA synthetase"
                     /protein_id="HGG0916605.1"
                     /translation="MGIVYEQTYRESLQNPEAFWAEAAKKVHWYNEWDRVLDDSDGHY
                     RWFVGGCMNTCYNALDLHVHNGRGDQLALIYDSPVTDTKKKYTYKQLRDRVAKVAGIL
                     ANKGVVKGDRVVIYMPMIPEALIAMLACARLGAIHSVVFGGFAAHELATRIEDAKPRM
                     IISASCGIEVSSIIEYKPILDEAIKKCTHKPTTCLIWQRPQYRANMLPWRDIDWELEE
                     EKTRGVDPVPVLATDPLYILYTSGTTGSPKGVIRSNGGHSVAMKWSMDNIYNAKAGDV
                     FFTASDVGWVVGHSYIVYAPLMNGCTTIVYEGKPVRTPNPSAFWRIIEEYKVNVLFSA
                     PTAFRAIKKEDPKGEWIKKFNLDSLRSIFVAGERCDSDTLKWIEKLTKKPVIDNWWQT
                     ETGWAIAANPLGLEAQVVKAGSPTKPMPGFNLKVLDEKGQELGAGKKGILCLKLPLPP
                     ACLMGIWENDERYRRGYLDQFPGYYLTGDTGYIDKDGYVYVLGRMDGIINVAGHRLST
                     GEMEEIIAKHPDVAECAVIGVNDELKGEIPMGFIVLKEGIERDHRGIVEGVVALVRQE
                     IGAVASFKIATVVSALPKTRSGKILRKNLREMADGSTLNVPATIEDSNVLKACEKAIN
                     ALGYPKNKGEK"
BASE COUNT         6813 a         3595 c         3105 g         6402 t
ORIGIN      
        1 ttattttact ttaaaaattg tatagagagt gaaaatgaaa aatcttttag tatgcgcctt
       61 agaaccttcg gcaaacctac atttaaaaga agttttaaaa gcttataaag aagaatttgg
      121 cgaatttaaa cttgatggaa tttatgatga aaatttatgc aaagaatttg ccctaaattc
      181 tacgccactt tatagctcgc atgaatttag tgccatgggt tttgtagaaa ttttaccttt
      241 gatttttaaa gcaaaaaaag caattaaaga attggtaaat ttgactttaa atcaaacaat
      301 agacgcggtt ttatgtattg actctcccgc ttttaatatc ccttttgcta aagctttaaa
      361 aaaagcaaat tcaaaaacaa aaagaattta ttatatcttg cctcaagttt gggcttggaa
      421 aaaagggcgc attcctatta tagaaagcca ttttgatgtt ttagcctcta tcttgccttt
      481 tgatgagcaa ttttttagta aaagcatata tgtaggacat cctcttttgg atgaaattaa
      541 agattttaaa aatgaaaacg atattaaaat tttacttagc aaaaacgaaa gtgaaaagac
      601 tatagcgttt ttaccaggct caagacgcag tgaaatcaag cgtttaatgc ctgtttttag
      661 agaattatca cgcaaatttg aaggagaaaa aatcctttgt gtgccacctt ttaatctcga
      721 aagattagaa atttatggcg atgtaaagga ttttaaaata caaagcaata caccccaagt
      781 gcttaaaaaa gctgattttg cttttatttg tagtggaact gctaccctag aagcagcttt
      841 ggtaggaact ccttttgtgc ttgcttataa agcaaagact attgatatat ttatcgcaag
      901 actttttgta aaattaaaac acattgggct tgcaaatatt ttttgtgatt ttgctggaaa
      961 agaagcttta aatcctgaat ttttacaaga tgaagtcaat gttttaaacc tttatgaagc
     1021 ttataataaa tatgattata aggcattttt tgataaagta cattttctaa aagaatattt
     1081 aaaatttgga agtgcgaaaa atctcgctaa aatattaaat caataataat taaggatata
     1141 taaatgcaaa aagaaccgat gagccaattt ggctatgata aattaagcgc tgaattaaaa
     1201 gatttaaaag ataaccaacg ccctgctgtt gtgatagaaa tcgacaccgc aagaagtcat
     1261 ggggatttaa aagaaaatgc agaataccat gccgcaagag aaaaacaagc cttgatagaa
     1321 agtcgtatcg cagaacttag cgatttaatc gcaagagcac agatcatcga tccttcaagc
     1381 tatgaacatg atagcgttaa atttggatct tctgtggtga ttatggattt agatactgaa
     1441 aaagaaagca aatataccct agtaggtatt tgtgagggaa atttggataa gggttatatt
     1501 tctattgctt cacctattgc aaaggctatg cttggtaaaa aagagggaga tgaatttaaa
     1561 gtgcgtttac caaaaggaga aagcgaattt gaaattatct ctatcaacta tgaaccttta
     1621 aaattttaag gatagaaaat tttactacaa aatggagcga ttttaatcgc agatgctcat
     1681 gaaaatgata aaagaagagg cttttgggaa tttttacaag ctttaaaaag gagtgaaatt
     1741 accacacctc aactcatttt aatgggagat atttttgact tacttatagg tgaaatctct
     1801 gctacgcatg aatttgcgaa accctatatt aaacttcttg aagaactcgc tttaaaaatg
     1861 gaaattattt atcttgaagg aaatcatgat tttaatctcg ctcgtttttt tcaaagggtt
     1921 aaaattttta atctacaaga acaaccctta aaacttaatt tacatacaag taaaggtaaa
     1981 aataccgatt ttaaaaattc ttttatcact ctagctcatg gggatatttt tttatctcca
     2041 cctttacaat ttgctcttaa aagcttgaga aatcattact tgctagtatt tttaaatttt
     2101 ttaaatcaaa taagtttcaa ttctatctca aataaaattc ttaaaaatca aaataaaaaa
     2161 aatctttttt ataaaattga aaattttaaa aatttagcca aagaaagata taaaaaatat
     2221 gaaaatttag gcttttgggt atgtgaaggg cattatcatc aaaatttaat attagatgaa
     2281 aaagatgtta aatatttcaa cttagctagt tttgcatatg agagaagttt ttttgtagta
     2341 gaatgctgtc aagaaatcaa atttcgagaa cagaaattga ggggtcaaaa tgtttgatga
     2401 aaatatcgtg aaaacgggtt caaatgaaat ggagcttgtc gatttccgta tctttaagca
     2461 aggacacgat aaagtctatg agggaattta tggggtaaat gtctctaagg ttagagaaat
     2521 tatcaaaatt ccaagcctca cagaacttcc tggtgtgcct gattatatcg aaggaatttt
     2581 cgatcttcga ggcgtagtta taccggtagt aaatcttgct aaatggatgc aaatcacaga
     2641 gccagaaagc actatgctaa aacctagagt tattatcact gaatttagta atattcttat
     2701 aggctttata gtacatgaag ctaaaagaat tcgccgtatc aattggaaag atatagaacc
     2761 agctactttc tctacaggtt caggtgcctt agataaagga aaaattacag gtgtcactcg
     2821 tatagaaaat gatgaagttc ttttgatact tgatttggaa agtgttgttg aagatttagg
     2881 aatttactct cctaaaaccg atatagattt tagtaaaatt gaaaaattca gcggatcagc
     2941 acttatttta gatgatagta tgacagctag aaaacgcgtt aaagaaatga tgcaacaaat
     3001 gggcttccaa gtaattgaag ctaaagacgg agttgaaggc ttaaataaac ttgaagaact
     3061 cagtcaagtt tatggagaaa acttaagctc tgtattaaaa attatcgtaa gtgatgttga
     3121 aatgcctcaa atggatggat ttcattttgc tgcacgcatc aaagaagatg caagatttaa
     3181 agatattcct atagtcttta actcatcttt atctaacgaa tttatgaatg aaaaaggtgt
     3241 tcatgaagcc ggtggcgaaa gctatttggt taaatttaat gcaagtgatt tcttcaatga
     3301 aattgctaaa gtcatcaaaa aacaccaatc tcaagaacag gggtaaaata tggaagatat
     3361 gcaagaaata cttgaagact ttttggttga agcttttgag ctagttgagc aaatcgacca
     3421 tgatttagtg gagcttgaaa caaatccaga agacttagaa ttattaaaca gaattttccg
     3481 tgtagcacac actgtaaaag gctcttcaag ctttttaaat tttgatgttt taacaaaatt
     3541 aacacatcat atggaagatg ttttaaacaa agcaagacat ggagaattaa aaatcactcc
     3601 agatattatg gatgttgttt tagaatccat cgatagaatg aaaaccttac ttaactctat
     3661 acgcgataac ggcaatgata cagctatagg aatggatata gaaccaattt gtgcaagatt
     3721 aacagctata tcagaaggag aatctccaaa tggcgttgaa aatgaaactc ctgtagaagc
     3781 tcctcaaaag gaagaaccag ctcctacacc agaacctgaa gtagatgtta atcaattaag
     3841 cgattctgaa gttgaagccg aaatagaaag attactaaaa gctaggaaag cagaagatca
     3901 agcacgtcgt gctcagaaaa agcaaaatac tgcagcttct acaacttcta aaccagcagc
     3961 aagcacacca aaagctgaaa atatggagaa aaaagttcct gctagtggag gcggtggagg
     4021 cggtatggat caaaccatac gcgttgaagt aaaaagatta gatcacttaa tgaatctaat
     4081 tggggagctt gttttaggca aaaaccgttt gcttaaaatt tacgatgatg ttgaagagcg
     4141 ttatgaagga gaaaaattcc ttgaagaact taatcaggtt gtaagtcaat taagtattat
     4201 tacaactgat gttcagcttg ctgtgatgaa aacaagaatg caacctatag caaaagtttt
     4261 caataaattc ccaagagttg ttcgtgattt aagtcgtgaa ttaggaaagc aaatagaact
     4321 tgaaattaca ggtgaagaaa ctgaacttga taaatctatc gtagaggaaa ttggcgatcc
     4381 tatcatgcat atgattagaa attcatgtga tcatggtgtt gaggatccag caactcgtgc
     4441 agcgaatgga aaacctgaaa aaggtatagt ccaacttaaa gcttacaatg aaggaaacca
     4501 tatagttgta gaaattaccg atgatggtaa gggacttgat gcaaatagcc taaaagctaa
     4561 agctatagaa aagaatttga ttaccgaaag agaagcagat caaatgacag acaaagaagc
     4621 ttttgctttg attttcaagc ctggtttttc aactgcggct aaagtaacaa atgtttcagg
     4681 tcgtggcgta ggaatggatg ttgttaaaac caacatcgaa aaacttaatg gggtaattga
     4741 aattgatagt gagttaggta aaggaagttc gtttaaactt aaaattcctc ttaccttggc
     4801 aatcattcaa tctttacttg taggaactca agaggaattc tatgcaattc cacttgcaag
     4861 cgttcttgaa acagttagag tgccaattga tgatatttac actattgaag gcaaaaatgt
     4921 attgcgcctt agagatgaag tactttctct tgtaagactt tctgatgtct ttggagttaa
     4981 acaagtgctt gaaagcggtg atcaaactta tgtcgttgtt ataggggtag cagaaagcaa
     5041 gcttggtatt atagtagata ctcttgtagg acaagaagaa atagttatta aatctatggg
     5101 cgattattta caaaacatcc aaggtatagc aggtgctact atccgtggtg acggtagagt
     5161 aacacttatc atagatgtag gcgctatgat ggatatggca aaagaaataa aagttgacat
     5221 caaagctcag attgaatcaa gtgctaaaaa accaaaagaa aaaccaagtg attacaaggt
     5281 cttaatcgtt gatgattcta aaatggatag aactttaatg caaaaagctt tagaaccgct
     5341 aggagttagt cttattgaag ctaccaatgg cgttgaagca ttaaatatta taaaatcggg
     5401 cgatcatgat attgatgcga tattaattga tatcgagatg ccaagaatgg atggttatac
     5461 cttagcgggt gaaattagaa aatattctaa atatcgcaat ttaccgctca ttgcagttac
     5521 ttcaagaaca agtaaaactg accgtttaag aggtgttgaa gtaggtatga cggaatacat
     5581 taccaaacct tattctccag aatatttgga aaatgtggtt agaaaaaatt tgaaactagg
     5641 ataagaatat gagtaatgaa aaattagagc aaatattgca aaaacagcaa actcagatag
     5701 ctggtcctgt tggtgatcaa aaagaagatg atatcataca acttgtaggt tttgtcgtag
     5761 gagatgagga atatgctatt ccaattctta acatacaaga aatcatcaaa cctatagaat
     5821 atacaagggt tccaagcgtt cctgattatg ttttgggtgt atttaatatg cgtggaaatg
     5881 ttatgccatt aattgatttg gcacagcgtt ttaatctagg aagttctaaa atgactcctc
     5941 aaactcgtta tattgtttta agaggcgaat ccaatggaag tggtgttgga ggaaatgcgg
     6001 gctttgtaat agatagacta accgaggcta tcaaaattca tagaaaccgt atcgatccgc
     6061 cacctgaaac tttggtaaaa gataagggta tgatctatgg tataggcaaa agagatgaaa
     6121 atatccttac catacttaaa gttgaagcct tacttaagcg tgaattttaa tgataaaact
     6181 ttgtgttttt gattttgatt ccactttgat ggatggagaa actattgata tattagctaa
     6241 ggcttacgac aaagaaaaag aagtggtgga tatcactcat cgcgctatgg cgggtgaact
     6301 tgattttttt gaaagtctgc aagagcgtgt cagttttcta aagggaatgc cttatgatct
     6361 tgttcttaaa ataggacaag atcttccatt gatgaatgga gcttatgagc ttattgaatt
     6421 tttaaattct aaaaatattt ttgttgttat ttttagtggg ggttttcatg aaggtattga
     6481 tcctgctatg aaaaaactaa aagtaaattt aggctttgca aattatctac atcataaaaa
     6541 taatacttta tcaggactag tgggcggaga aatgatgttt tcaaattcaa agggtttaat
     6601 gctgcaacgc ctcaagaact ttttaaattt gcaaactcat gaagtcatgt gtgtgggcga
     6661 tggagcaaac gatatcgcta tgtttaatga aagcggttta aaagtcgcat tttgtgctaa
     6721 agaaattttg cgatcaaaag cagatatttg cgtagacaat aaagacttga aagaaataat
     6781 aaaggtaata taagatgaaa aaattttctc tttggtgtga ttttatagaa aatagttttt
     6841 tagatgatga ttttttaaat ttactatctc gcggtgtcaa tggagcaact tcaaatcccg
     6901 ctatttttaa aaatgctatt ttaaattcgc ctatctacaa agaaaaaata gccaaattaa
     6961 aaggaaaaaa ggcaaaagaa atttatgaag aacttgctat tgctgacata caaaaagcag
     7021 cagacaagct tgctccttta tatcacacgg gaaatgatgg ttttataagt cttgaaatcg
     7081 atccgagatt ttatgataat acaagcttaa gtttgggcga agcaaaaaaa ctttatagtg
     7141 ccattggtaa agacaatgtg atgattaaag ttccagcaac caatgcttct tatgaagtaa
     7201 tgtatgaatt gatgaaaaat ggcatcagcg taaatgctac tttaattttt tctttagagc
     7261 aaagccaaaa atgctttgaa gctttaaatg caggtttgat tgaatttaga aaaaacaata
     7321 tagccttgca aggaaaaaat actcacttaa gaactccgca agctgttata agcatctttg
     7381 taagtcgttt tgatagactt ttaaattcta aagcaaaaga acaaaatcgt ataggaattt
     7441 taaatgcaaa tttagcctat aataatatca tctccaaaaa cgaacctaat atccgagctt
     7501 tatttgcaag cacgggtgta aaaggcgatg atttaccaaa agattattat atcaaagaac
     7561 ttctttttga aaatagcata aatactgccc cactagatgc tatcaatgca tttaaaaccg
     7621 aaattgaatt taaaaaacct ttaatgaatt ttgaaattta cacacaactt aatgctatta
     7681 tttcacaaaa tgaaagagaa aaagcttgtg atgaattact aaaagatggt ttagagcaat
     7741 tttgcatagc ttttgaagaa attttacaag cactaaacta acgaattttt ttaagcttct
     7801 tacgatgaag ttttattatt tttgatgggg tattttcaac aaatatctca tcaaccacaa
     7861 catctgcgac acttctagcc caaagctcat caaatttttg tccgtgcttg tttgcagaac
     7921 ttgaataaaa acaacccatt ttttctaaga attgtgcgtg tttgcaatct ttgacaattc
     7981 ttactgcttg attgtttgga taaataaaag ttgttttttt ggcacgacgc acccagtttt
     8041 taaattgatt tggaactctt acgatttttt ttaactcgtc aaattttgca gaagtgatca
     8101 agcagggctg atctttagcc ctgcctttta aagcattgat ttcttctaaa tttttactta
     8161 aaaatcctgc tgtagtatct gtttgcgcta gataaatcaa gcttttaaat actcctgcag
     8221 gcttttaact tctaaataac tttgattttg tatcgcttta atcgattttg cacccgcaag
     8281 agctgaacgc aaatttgtaa aataagggat tttaaaacgg ataatatttt cacgaatttt
     8341 tttcgtatcc cctgcaaaag tatgactatc acttgtattt atcactagct gaatttctcc
     8401 atttttcagc ttgtcttcca catttggacg cccttctgaa attttatgta caagctcaca
     8461 ctcaaaacca ttttctacaa tttctttaca agttccactt gtagccatta gtttaaaacc
     8521 taatttagag tattcactcg caagtttttt agcatacttt ttatcttttt cttttaaaga
     8581 aatgaaaacc actccacttt ctggcaaatg attaaaagat gaaatttgac ttttcgcgta
     8641 agaattagca aaatccttac ttatgcccat aacctcacct gttgatctca tctcaggtcc
     8701 tagctctaaa tcacttccac taagcttagc aaaaggaaat accgcttctt ttacgctgat
     8761 atattttgaa agcttaggac gcaaaatcgc attgtcaaaa ttcaccacac caaaagcatc
     8821 ataaaatttt aaagcttctt ttaaattcct ctgccacatt acgcgtgttg caacttttgc
     8881 caaaggtata cctgtagctt tacttacaaa aggtacggta cgacttgctc taggatttac
     8941 ttctatcata taaagttcgt tattgtaaat tgcaaattgt atatttaaaa gtcctacaac
     9001 acctaaattt aaagcaatat ctgcagtttt ttgtacgatt tgttcttgca ttttttcatc
     9061 aatattgcaa ggtggcaaag aacatgcgct atcacctgaa tgaattcctg cttcttcaat
     9121 atgctccata attcctgcta cataaacatc tttaccatca ctgatagcat caacatcgat
     9181 ttcagtcgca ttatctaaat actgatcgat caaaacagga cttttatcgc ttacatccac
     9241 agcttcttgc atataaagtc taagttcact ctcatcatta accacgcgca tagctcttcc
     9301 gcctaaaaca taacttggtc ttacaagcac aggataacct atctcgctcg cttttaaaac
     9361 cgcttcttct acgcttgtag cggtagaatt tttaggttga ttgataccaa gttttgtaat
     9421 aaattcagca aatttctttc tatcttctgc catatcgatc actcttgcgc ttgtgcctat
     9481 gattttagct ccaaaagcac tcaagcgttt agcaaattta agaggagttt gaccaccaaa
     9541 atgtactata accccatctg gtttttcgcg ctcaatcaca ccacgcaaat gctcaaaatc
     9601 aataggttca aaatacaaaa tatcactcgt atcataatct gtagaaacgg tttctggatt
     9661 gcaattatac ataatagttt ttacgcctaa atcctttaat gcaaaagaag catgcacaca
     9721 agcatagtca aattctatcc cttgtcctat acgatttggc cccccgccta taatcatcac
     9781 ttttttttct tttttatctc ttgcttcatt tttgctttga gtaagttcac ttacattgat
     9841 actagaataa agataaggag ttaaagcttc aaattcccct gcacaagtat ctacttcgct
     9901 aaattctgct atgatttttt gcttcattct tgcataatag atatcatttt gacttaattc
     9961 taaattatct tttagattca caagcaaggc gatcatcttg tctgaaaaac ccatagtttt
    10021 tgcttttctt aaaagggttt tgttatgcaa gatatccata tcaatttgct cttcaaaatc
    10081 tacgatttct ttaatttggg ataaaaacca aggatcaatt ttacaaagct cataaagctc
    10141 ttttacatca aaaccctctc taaaagcttg cgctacataa agcaaacgct tttcattagc
    10201 gttgcgaatt ttaaagataa gatcgttttt atcttcaaat ttcactctat caaaaccact
    10261 taaatttctt tccaaagaac aaagtgcttt ttgtatactt tctttaaaag ttcggccaat
    10321 cgccattacc tcacccacgc ttttcatcgc tgtgcctaaa gttgtattgg ctcctgggaa
    10381 tttctcaaaa gtaaaatgag gaatttttgt aacaatataa tcaatcacag gttcaaaact
    10441 agcaggagtg ccggtaatat cattttttat ctcatccaag ctaaatccaa tcgccaaaag
    10501 tgttgcaacc tttgctatag gataacccgt tgctttagaa gctagagcgc ttgatcttga
    10561 aacccttggg ttcatttcaa taactatcat tctaccattt gttggattga cagcaaattg
    10621 cacatttgat ccgcccgtat ccacgcctat ttcacgcaaa atggcaaaag aggcattacg
    10681 cataacttgg tattctttat cagttaaagt aagagcaggt gcaaccgtga tactatctcc
    10741 tgtatgcact cccataggat cgaggttttc tatactacac acgataatgc aattatcatt
    10801 tttatcgcgg ataacctcca tttcatactc tttccatcca agcaaacttt cttcgataag
    10861 aatttcatgg attggcgaaa gtgctaaggc agcattagcg agttctttaa attcatccat
    10921 attataaacc acaccgcttc ccgcaccacc taaggtataa gaagcacgga tcatcaaagg
    10981 aaagccgatt tcatctacag cttttaaagc ttcatcataa ttatacgcat acatagattt
    11041 tggtaaatcc atgccgattt ttttcataca ttctttaaaa acttgacgat cttcgccttt
    11101 tttaatcgct tcagggtttg cacccaaaaa cttcacatca cctaaaagtc cgctttcata
    11161 aacttccata gctacattta gagccacttg tccacccatg gttggcaaaa tggcatcgat
    11221 tttctctttt ttaataatac ttaaaatact ttccttggtt acaggctcta tataagtagc
    11281 atcagcaaat tcaggatcag tcataatagt cgctgggtta gaattgatta aaactacgcg
    11341 atacccttgt tcttttaaag tttttgctgc ttgagttcct gaataatcaa attcacaagc
    11401 ttgacctata acgataggac cacttcctat aagtaaaata tttttaatat ctgttcgttt
    11461 tggcatgaat tttcctaaga gcataaattt gggctgatta taacaaattt tagttttaca
    11521 aactttgaaa ttctgttata attttaaaaa aataggcaag aaagaaatac tcatgaaaaa
    11581 aattaaaatt tcagtttttt taatattttt ttgtcaattt tccgttttag caaataattt
    11641 accccaaaat ataaaagaaa atttaggcat taatcaattc ttggacgaga gtttaaaaga
    11701 aattttaaat cagcccttaa aggaaaaatt tgctcttact ccaaaggggg aatatttttt
    11761 tcgagagtaa tttaagtctt tttcaaaaac aatacttaga aaataatgcc accgcatgtg
    11821 cttatttagg aagagaattt gcagcaaaca cgagacttcc tttggattta aacaaagctt
    11881 tattgctttt ccaaaaagct tgtaaacttg ggagattgga ctcttgtgtg agaatcaaca
    11941 atataaaatt taaattactg aaaaagctag atgaagaaac ttatcaaagc aatttaaaat
    12001 attttttaga tcaaaactca agttttgctt tattagaaca tatcgctacg cttagtaaaa
    12061 aagatataaa atcagcaatt atactagcca aaaaaagctg cgagcaaggg catgatgcta
    12121 tttgtacagg actttcttat atgtatgcat gcggacaagg ggtagaaaaa gacttaatca
    12181 aagctaaaga attaagctct aaagcttgtg aaaaagatac aaagttgtgc tttgcgcaag
    12241 gctgggttga attatttaat caaaatgata ttttagccca aaaacttttt tataaatctt
    12301 gtcaggccgg atattatact gattgtaata tggcagttga taaaaattcc aaagatcaag
    12361 ctatgcaatt atatcttatt aaaatcacac aaaaaatagt caaaatcaat gtcaaaactc
    12421 aagcaataaa caatcttttg cttgccataa agcatctgct ctttctaaag aaattttaaa
    12481 aatccaattg aaaaaaattt ctgaaaaact gctttttaca attttaattt aaattcatga
    12541 acaaaaatag caaaaagtat aaaaactcca cctaaaattt gcaaaaacga aatactttga
    12601 gccaaaaaca aagacccaaa aagcatagca aacaaaggct cactaagttc tataagctgg
    12661 actgaatttg actttgcaag acttaaggct ctagtagtgc agtaaaatcc ccctatagta
    12721 ggcaaaaacg ccaaagctaa aagcaaaata agactttcta aagaaaaatt aagatttaaa
    12781 tttgctccaa ataaaggaat actcaaatac aagcttccta taaaaagcaa agcacaaaga
    12841 ggaactaacc caaaacccag ttttaatttt ctagtaaaaa ataaaaataa agcatagcca
    12901 atccctgcta aaatagcatt tacaaggcct tttaaatgag taaaattttc caaagtccca
    12961 ccttcagcca aaaaaatcat ccaaagtccc aaaagcgcaa aaaccatagc caaaagctca
    13021 tttaaatgaa aaaagcgttt aacatccaat gcttcacaaa taaaagtgat aatcatcccc
    13081 acaccaaaaa gcacaaaaac tacattagcc acactcatac tcgtgtaagc agcactctca
    13141 aaatgataaa gcataaaaaa tccaaaaaaa gcaagaagca aaagtgtgaa aattttctgc
    13201 ttgataaaaa ctagcaaagc gcccaatttt ctcatataaa ttaaaatcgc aaacaaaatc
    13261 acactagcca caaagcattt ataaaaagct acttctgaac tcataaaacc ttttttaaaa
    13321 agaaaaacgc taaaaattcc aacaaaagcg ttaaatatag cggctaaaaa agcaaaaaag
    13381 aaagcttgaa atttaggatt ttttagcata ttttaagctc ctttttaatt atttttttcc
    13441 atagagagga agctttattt gaagagctaa aaatacctcc catattagag tttaaaagtc
    13501 tgtattcttc atttttacat aaaatattat gagctttatc taaattccaa aaaggaatat
    13561 ttgcaaacaa atggtggatt aaatgataat tttccttatg taagccagta aaaaataatt
    13621 caattttatt gccaaatcta ttccaagatt tttctatttc tcttttgttt tttataatag
    13681 gaaaatgttc tgccatctct ataaaatgtc ctaccatagg aaaacttgta agtaaaggca
    13741 caaaccaata cattaacaaa atatcaagaa cattaacata aaaacaaata ccaaaaatag
    13801 caatccaaaa taaaataaga tatttaattt ctttatcctt aaaatcaccc aagcgatttc
    13861 ttataagata agaaataaaa tcaaaagtct tacccaaaaa caaaggcaag ataaggtgcc
    13921 taaaaataaa ttcttttaaa gaacgggaag caaaaagctt tgattgtata taaaaatcat
    13981 aatcaggatc tttattttca attcctaaaa aaccatgatg tttaataaca tgactttgtc
    14041 tgtatttttc aaaagtctga aaaataagat atccgcttgg atatttacct aaaaaatcat
    14101 ttaattttct attttttgcc agtattctat gggctgactc gtgtaaaata gtcgctaaag
    14161 ccctttgtct cgtgccaata aataaaactg caaataaata cataaaaatg ttgtgcataa
    14221 aacaagaaat ggctattgtc aaaataattt gtaaataatc ccataataca gcaaaaattc
    14281 catgatagtt atcaagttta taaagcactt taagttcttt tagaatagtt ttttcaaata
    14341 acatttttaa tcctaaatca ttatattaac tatattaaac acaagactag aatagtcttg
    14401 tgtctgcctt aacccaacca aaaaagatcg ctaaattcat taaaattcat ttgctctaag
    14461 ctcttttgat cttcgcaaat ttgcatgatt ttttcacatt gttttggact taaacgcgca
    14521 gcaagattgg ctttaaattt agcaattaaa agcggaattc cttcacttct gcgtcttttg
    14581 tgtcctatag gatactcaac ttcgactttt tttgtacttg tgccatcttt aaagaaaact
    14641 tgcacggcat tagctatgct tcttttatcg ctttctaaat actcttttgt atagcgatca
    14701 tccacttcta cttgcatttt agctcttaaa gcatcgattc tttcatcgct tgcaacacta
    14761 tcttcataat catctgcatt caaacgccca aatataagtg gcacagcaac catgtattgg
    14821 atacaatgat ccctatcggc agggtttgca agctcgccta ctttgttaat gatgcgatgt
    14881 cctgattctt gagttgtgat gatgattttt tctatttgct ctaaacgatc ttttacctca
    14941 tcatgtaaag ctaaagctgc ttctactgca gtttgtgcat gaaattcagc tgggaaagaa
    15001 attttaaata aaacattttc cattacataa gaaccaaatt cttgaggaat agtaagtttt
    15061 tgtcctttca ttttcacatc ttcataaccc caaaatttag cacttaaagc cgaaggataa
    15121 cccatctctc ctgttttagc ttttaaagca agatctacac ctctacttga agcatcacct
    15181 gctgcccagc tttttctact acctgtattt ggcgcatggc gataagttct taaagctcca
    15241 ccgtcgataa aggcatgaga aatagcattg cgaatttctt caaaatcaca acccaaaagc
    15301 tttgcagcta ctgcagtgct tgctattctt acaagtaaaa catgatccat tcctacttta
    15361 ttaaaacaat tttcaagcgc caaaactcct tgaatttcat gagcttttat catggctttt
    15421 aggacacatt ttacttttaa aggctctttt ccttcgctga tatttttacg acttacataa
    15481 tcagccactg cccaaatcgc acctaaatta tcgcttggat gcccccattc agccgcaagc
    15541 catgtatcat taaaatcaag ccatcttacc atagcaccca cattaaaagc cccacggatt
    15601 ggctctaatt gataagatgt tccaaacact tttgcaccca aaggtctaaa ttcagcccct
    15661 tcaacacttg gccctaaaag cttggtgcaa gcaggatatt taagcgctaa aagtccacaa
    15721 cctatagtat ccatcaaaca atatctagcc gtttctaaag ccaaatcact tgtaatttca
    15781 aattcatcag catattttgc aatttttgtt aaaagttcat caaattcagg gcgttttgcc
    15841 tctaaaattc ccatatcact cattttttct ccttatctat cttgaatttt tacaaatttt
    15901 cttggttcaa cgcctatata ttcgctactt gggcgtataa gcttattgtt tgctctttgc
    15961 tctttaatgt gcgcacacca accacttacg cgactcataa taaaaatcgg cgtaaaatac
    16021 tcagttggaa ttcccataaa atgataagct gatgcactat aaaaatctgc attaggtggc
    16081 aaacttgggc gtttttcttt catcaaagct tctatggctt cactgatttt aaaaagtaaa
    16141 tcatcacctc ctaaatgctt actccaaacc ttaataagcg catttctagg atcgcctcca
    16201 agcccataaa cacggtgacc aaaacccatt aaaagctctt tattttctaa ttttttattc
    16261 acaccctcaa tggcatcctc aacactttta aaactttcta ttaagtgcat cgctgcttca
    16321 tttgctcctc catgcaaagg ccctcttaaa gctccaatag ccgcagcaac tgcgctaaaa
    16381 atatcacttt ttgttgaagc acaaattcta gctgtaaagg ttgaagcatt aaattcatgc
    16441 tctgcataaa ggattaatga gcattgcata gccttgataa aatcttcttt tggagcttca
    16501 agttttaatt tttccaaaaa atatcccgct atatttgttt gattggaatc aaaatcaatt
    16561 tctttaccaa aattcacata atgatgccag taacaaagta cactcggcaa aattcctaaa
    16621 agtctgatga ttttttcatc ttgatcacta aaatcctcat tttcgccttc taaagctcct
    16681 agtgctgcaa cagctgcttg catcaaattc ataggatgaa cttccttagg tatagccctt
    16741 aaaacgcttt ttaaattctc actcaaagct ctttgagcaa tgattttttc tttataattt
    16801 tctaattctt ttgcgtttgg caattcccca aattggagca aataagctat ttcttcaaat
    16861 tctgcatttt gtgctaattc ttctatgcta taaccataat aatttagtcc gtttccaagc
    16921 ccgcaagtac aaattgcact ttgtcctgcg ataactcctg ctaatccacc cgttttttta
    16981 gctgcttcac ttatactcat tttgcacctc ttttaaataa ttcgtctaat ttttgctcat
    17041 aagaataata atctaacatt tcataaagct cttctctagt ttgcataatt tcaagcacat
    17101 ctttttgatg tccgtttttc aatatgcttt cataaacttg aactgcagct ttattcatcg
    17161 cacgatttgc acttaaagga taaagcacca tagatactcc tgctctattt aattcttctt
    17221 tagtaaaata aggagttttt ccaaattctg tgatatttgc aagaattgga acttttacat
    17281 ttttaacaaa ttcttcatat tcttctaaac ttgtaatagc ttcagcaaaa accatttcag
    17341 ctccagcctc aacatatgcc aatgcccttt caatggcttt ttgttgaccc tcgattgcat
    17401 gcgcatctgt tcttgccata atcacaaaat caggatcgat ttttgcatct actgctgctt
    17461 taatacgatc acacatctct tcagtgctta ctaattcctt attaggacga tgtccgcacc
    17521 ttttttgagc cacttgatct tcaatatgag ttgctgctgc acccgcacga atcaattctt
    17581 ttatcgttct tgcaatatta aaagcgcctc caaaacctgt atctgcatca actaataaag
    17641 gcgtatccac tctagagcaa atgcgtctta catcaatgca tacttcttca agtgcgataa
    17701 tccccaaatc aggcaagcca taactcgcgc ttgccacgcc acttcccgaa agatataaag
    17761 ctttgtgtcc tattttagta gcttgtaaag cactataagc attgacagct cctactatgg
    17821 tcaaaggttt gcttgtcttt actaattctt taaatttttt tcctgcactc attatttttc
    17881 tcctttattt tttgggtatc ctaaagcatt aatagctttt tcgcaagctt ttaaaacatt
    17941 actatcctct atagtagctg gaacatttaa ggttgaacca tcagccattt ctcttaaatt
    18001 tttacgcaaa atttttccac ttcttgtctt aggtaaagca ctaacaactg tggcaatttt
    18061 aaacgaagct acggctccaa tttcttgacg caccaaagct acaactcctt caactatacc
    18121 cctatgatct cgctctatac cctcttttaa aacgataaag cccataggta tttcaccttt
    18181 aagctcatca tttacaccta taaccgcaca ttctgcaaca tcaggatgtt ttgctataat
    18241 ctcttccatt tctccagttg aaagtctatg gcctgcaaca ttgatgattc catccattct
    18301 tcctaaaaca tacacatagc catctttgtc gatatagcct gtgtctcctg ttagataata
    18361 gcctggaaat tgatctaaat atcccctacg atatctttca tcattctccc aaattcccat
    18421 taaacaagct ggaggtaaag gaagttttag gcacaaaatt cctttttttc ctgctccaag
    18481 ctcttgacct ttttcatcta aaaccttaag attaaatcct ggcataggtt ttgtaggact
    18541 tcctgcttta acaacttgcg cttccaagcc caaaggatta gctgcgatcg cccaacctgt
    18601 ttcagtttgc caccaattat caatcacagg tttttttgta agcttttcta tccatttaag
    18661 cgtatcgcta tcgcatcttt cacctgctac aaaaatagat cttaagctat caagattaaa
    18721 ttttttaatc cattctcctt taggatcttc ttttttaatc gccctaaaag cagttggagc
    18781 tgaaaaaagc acattcactt tatattcttc aataattctc caaaatgctg aaggattagg
    18841 tgttcttaca ggttttccct cataaactat agttgtacat ccattcatca aaggtgcata
    18901 aactatataa gaatgtccca caacccaacc tacatcagaa gcggtaaaaa agacatctcc
    18961 tgctttagca ttataaatat tatccatcga ccatttcata gccacagaat gacctccgtt
    19021 agagcggatt actccttttg gagaacctgt ggtgcctgaa gtataaagta tataaagcgg
    19081 atcggtagct aaaacaggta caggatctac accccgagtt ttttcctctt caagctccca
    19141 atcaatatcc ctccaaggaa gcatatttgc tctatattgt gggcgttgcc aaatcaaaca
    19201 agtcgtaggc ttatgagtac attttttaat agcctcatct aaaataggtt tatactcgat
    19261 aatgctactt acttctatcc cgcaacttgc actaataatc attctaggtt tagcatcttc
    19321 tatcctcgta gcaagttcat gtgctgcaaa gcctccaaat acaacactat gaatagcccc
    19381 aagcctagca caagcaagca tagctataag tgcttcaggt atcattggca tataaataac
    19441 aacgcgatcc cctttaacca cgcccttgtt tgctaaaatt ccggctactt ttgcaacacg
    19501 atcacgaagt tgcttataag tatatttttt ctttgtatcc gtaacaggag aatcataaat
    19561 cagtgctaat tgatcgcccc tgccattgtg tacatgtaaa tcaagcgcat tataacaagt
    19621 attcatacac ccgccaacaa accatctgta atgcccatcg ctatcatcaa gcaccctatc
    19681 ccattcatta taccaatgca cttttttagc tgcttcagcc caaaatgctt caggattttg
    19741 aagagattct cgataagtct gctcataaac aatacccata atccatcctt tcttgataag
    19801 ttgaatttgc attatagagt ttttgtttga aaaataaaat gccaattttt tggtttaatt
    19861 gtgtgatttt gtagctaaaa aaataaattt tgtatatttt ttgaacaaaa tttta
//
LOCUS       DBBXRO010000017        19778 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.017, whole genome shotgun sequence.
ACCESSION   DBBXRO010000017 DBBXRO010000000
VERSION     DBBXRO010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19778
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.017"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(13..1332)
                     /locus_tag="ACJFEZ_000464"
     CDS             complement(13..1332)
                     /locus_tag="ACJFEZ_000464"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HGG0916606.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSTIFKIIKVFFIAFLLSNCIYLS
                     FFENIFTQAISSFLAIWGLVLLLKSKSPKQYFWIGFFVGILWFWWIGLSSIYFDLNYL
                     VPIVIILIGIVYGILFRICYLFKFDFLRLCGIFCLSFIHPLGFDWLNWGVYTVYGFFD
                     PSYRGIICIFLLAYIIHENYISRYYKIAILLIIFFIGFQYDEKKSEELNLSYKLISTD
                     ISQDQKFLQENVSVNSDNLIEEIIQAINEKKELVILPETAFAFNLKNTLYEKMLKELS
                     YQIIIITGAFNIQEGKTYNSTYIFKGGNSYILNKHFLVPFGEEIPFFKKTIQKYFLPN
                     IAEFDQGPLQSKYKLNDQIITNAICYEATKEQNYKNSKIIIAISNNAWFNYSSEYKLQ
                     KLLMQFYASKYGVSVYHATNGKESGVIKPKEKFVQKIKNYFNKQDKS"
     gene            1305..1577
                     /gene="yajC"
                     /locus_tag="ACJFEZ_000465"
     CDS             1305..1577
                     /gene="yajC"
                     /locus_tag="ACJFEZ_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HGG0916607.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEDDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1570..3150
                     /gene="secD"
                     /locus_tag="ACJFEZ_000466"
     CDS             1570..3150
                     /gene="secD"
                     /locus_tag="ACJFEZ_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HGG0916608.1"
                     /translation="MRNSKITYRLVVFIAVFIFGVVFSLPSFLQSERGVKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSVASSLSYSFNKENILNDGLNIHDDSLDFTLLDNADIV
                     KTENLLKEINGLNVQREDMHYTISFTSEEVKSIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGEDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMSQASNMSDAEAAS
                     YGLVLVPDSRNPNLKYPLKSIPILDGSMLTDARVGLSDTSNYPVINFTLNAEGSKKFA
                     DYTGSNVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASIFIVVFMVLYYGMAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLREGANIKASIEQGYK
                     NAMSAIIDSNITSLVTSIALYAYGTGAVKGFAVTLGIGIVVSMITAIWGTHGMFDYFM
                     RRIEKSNNTRFWFGYRRK"
     gene            3150..4121
                     /gene="secF"
                     /locus_tag="ACJFEZ_000467"
     CDS             3150..4121
                     /gene="secF"
                     /locus_tag="ACJFEZ_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HGG0916609.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSIVLFFGSIYLLWDRGLQFGID
                     FSGGTLIQLKYDTAAPIPQIREILEKQGSFQNLSVTEFGSKEEITIRFLGSNDSLGSD
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGIMAIIVSLVAILIYIAIRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKSELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMMQGFSLALIVGIVVGT
                     LSSIFVASPTLLWFKFSVIDFRNKELEKLKRKQEKERNRAMYEKGTV"
     gene            4131..6563
                     /gene="leuS"
                     /locus_tag="ACJFEZ_000468"
     CDS             4131..6563
                     /gene="leuS"
                     /locus_tag="ACJFEZ_000468"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HGG0916610.1"
                     /translation="MAYDANLIEKRWQEIWDKNEYFEPKDDLTLPKKYILSMFPYPSG
                     RIHMGHVRNYSIGDAIARYYRKIGYNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKNELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMYEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLSELENLKDKWPSQVLTM
                     QENWIGKSEGLEFSLNLDKESLEKTKTQSFEVFTTRADTIYGISYVALAPEHKIVQNL
                     IQANCLDDEKVEQIKNMQKQSARERQIADKEGCFLGIYAIHPLTQEKLPVWVANFVLA
                     DYGSGAVMAVPAHDERDFEFANKYKLEIKQVIECEDAQLPHVQKTGKLIQSGEFNGFD
                     CNEVRARIISKFEDEKLGKRVINFKIRDWGVSRQRYWGAPIPMVKCKNCGIVPQKIEN
                     LPITLPEDIQITGEGNPLEKHPIWKNCTCPKCGQEAQKESDTLDTFFESSWYFARFAS
                     DEKTWQEKALDKESVKYWMNVDQYIGGIEHAILHLLYARFFQKVLKDLGYLEDNEPFA
                     RLLTQGMVLKDGAKMSKSKGNVVDPDDIINKYGADTARLFILFAAPPAKELEWNDDAV
                     EGAYRFICRLYDRAQNVRAGELLEFKHDDLNKEEKYARLKVYEALKKSFEVYTQSFAF
                     NTLIAACMEALNALAPCKNEALEQEAFYIILNILEPIIPHVCFELSDKLFKCENFKVL
                     NLKEEVFVKDSLNLGISVNGKKRGEIEVSSSASQDEILELAKQKVSKWLEGKNIVKEI
                     YVEGKLVNLVIK"
     gene            6560..7072
                     /gene="lptE"
                     /locus_tag="ACJFEZ_000469"
     CDS             6560..7072
                     /gene="lptE"
                     /locus_tag="ACJFEZ_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HGG0916611.1"
                     /translation="MKGILFFIVALFLGACGYVPTSKVADNIFDDKVYVNVELSLQDP
                     RNSIFVADTLKEMVISKLGRRLALKHEADDVINVRMNNLEFIPLIYDQNGYVVSYKAK
                     LNLEFKVVFKDGSVEHFNTSGSYNFDISPNSIISDTARYEAIRSASSEAFDEFISVIA
                     IKGQKRAAQY"
     gene            7056..8459
                     /locus_tag="ACJFEZ_000470"
     CDS             7056..8459
                     /locus_tag="ACJFEZ_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916612.1"
                     /translation="MLPNINEIAKETLITLKDRKLRPTPENYTEIFEELSKKYGLISS
                     NKAKLEKYKALLLPNYQQELNSKSIRTLEELISFLISALNRQNGKQFSEFFDFLATLS
                     KSLQVSKDKKIRDLAKITSIRISKTMDSESIYLLSKKWKEFEKNYNENDLEGGLRRYG
                     IAKYDDFDTVVKKLLNKLEERSLEVFAELLASCLNPSLVEDLKIHGFAQNLLQKPFLL
                     SESGFKNELLEFVNRRVMVDNMYVQKNLNFFNDNLKKIYELFMLLNKSNEQNMDFINT
                     LKPDKQGEIKLSFELLKQKFIQLNERINSLNAQIEFTQNLEERESWSVLKELERLDEN
                     YNKYKVNYSLALFSIKNYRFIMERYGVGSLNEIFVRFKKILKDNCSEFDELWMIDEKS
                     YLIISPGRNKEKVAQLVRENLKTIENFRFIYKQDIITPKIITAYLDKQSKPHANILEE
                     LMNQISNLDERNNAKDQ"
     gene            8431..9618
                     /locus_tag="ACJFEZ_000471"
     CDS             8431..9618
                     /locus_tag="ACJFEZ_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HGG0916613.1"
                     /translation="MKETMQKISKVDEFLVQKSTNYDKIDRFVMFRMYEKYKTNFSIK
                     PIVHIIGTNGKGSTGRFLTQLLEGLGFKVGHYTSPHIFEFRERFYKNGDIISENDLEL
                     AHENLLDIFKDNLKKLSYFEYATFLAVELFKDCDYAIFEAGVGGEYDATSVFDKSLSI
                     FTKVGFDHTQILGDSLEKIARTKFKVMAKQALISSEQDERVLQMAQKIAFLKNTKLYF
                     SWQLKDENLMQLNEYVQKYDLPEFLRHNLILALNALEILLSKEKLSQALLKLGKLNLK
                     GRCEQIAPHLYVDVGHNVMAASALCKKFSGEKLVLIYNSYLDKDIFEILKTLKPIIDT
                     IKIYKYVSLERRLANDKIYQVANALNLKCEEFVSLDEKKKTLVFGSFALVESFLKEWS
                     DKK"
     gene            9605..10507
                     /locus_tag="ACJFEZ_000472"
     CDS             9605..10507
                     /locus_tag="ACJFEZ_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HGG0916614.1"
                     /translation="MIKNKFTITITDINGSRHFYLNQIIKKIVLYVVAFIFLFLIFSG
                     FYIKYLDSKLSDISTKREELLAKSKELEFANAQMQKNVEEKAKQYAAIEDKIASFEEA
                     LGLEAENNLTITDRLDNLKLTNEQQIGILGQIPNGWPIENKGVTGNFGWREHPLLKRR
                     EFHPGIDLRAAIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMVRKDV
                     VKAGQFVNKGQLIGYTGNTGLSTGPHLHYEVRFINKTLEPLYFLNLERKNMNEFFNQE
                     RRVPWQSLIKAVTAQHLAPVPKQQ"
     gene            10444..10839
                     /locus_tag="ACJFEZ_000473"
     CDS             10444..10839
                     /locus_tag="ACJFEZ_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HGG0916615.1"
                     /translation="MAIFNKSGNGTALSSSSETTVISSGARIEGEFYFASMLHVDGEL
                     NGIVHSESIVVIGKNGNLKGELKADKIVVNGCFEGDLEADSLEILAGGVVSGNISIKD
                     LAIENGGRFNGTSKIKQEEPVRLLENSSE"
     gene            10839..13775
                     /locus_tag="ACJFEZ_000474"
     CDS             10839..13775
                     /locus_tag="ACJFEZ_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004290191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HGG0916616.1"
                     /translation="MQANFFEYLQDSNIAQLVLCEDDKESFLLSQVALFKDLKTFVLP
                     DFRAEFGDDLRAFSKELFELCKVLNAYHKEKDTKILISPLSTILKKLPGQKHLKNYKL
                     SKKNVFNLSEFKNELNKLGYEFVDMVQDKGEVSIRGEIIDIFCINEELPTRVLLFGDE
                     LESIRKFDPMNQKSFPKEYEELEICPFLTYFSEENYENFKDKLENFNSDVLINDINSL
                     GFWCIDDFCDYLELDFISIKKFNQEEWDKDLSKINAKIIPQASVYKDLKSSYNKDFFS
                     LQQNKKITILAKNEALFKALELENTQNISFQKSDLILNLISNQELIISLNHKEKQKYK
                     RKANLIIDELKIGDFIVHEDYGVGKFLGLEMISISGAKKEFVAIEYQNSDKLLLPVEN
                     LYMIDKYLGASGGIPLLDRLGKMTFIRLKERLKTKLLAIASEIVIMAAKRALIKPKEI
                     KIDYADQAYFVSKAGFSYTQDQNKACEEILNDFENGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFFFAPTTLLSHQHYKSLKKRFELFGIEVFKLDRFTSTKEKKTLMLNL
                     EQNKACVVIGTHALLNVECENLALVIIDEEHKFGVKQKEKLKELTQNSHLLSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRLDVRTFVKENDDALLKEAITRELRRGGQIFYIHN
                     HIASIEQCKKHLLDLFKNLRILILHSKIDAKIQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTMIVERSDRFGMADLHQLRGRVGRSDRQGYCYFLVENKEELTQDALKRLVSL
                     ESNSYLGAGSVLAYHDLEIRGGGNLLGIDQSGHIEQIGLSLYLKMLEDELNALTKKES
                     FEEKKIDLKLTINAFLNSELINEDRLRLELYRRLSKCKNIDEVYEIEGEIEDRFGKLD
                     LYTKQFLMLIIIKILALGKFKTISNFEQNIQFVKINDEKEFIKARSKDDDDIIEAVLT
                     HLRKDK"
     gene            13779..14540
                     /locus_tag="ACJFEZ_000475"
     CDS             13779..14540
                     /locus_tag="ACJFEZ_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0916617.1"
                     /translation="MDWDKTYAAIYRSRKDYLKPIIDLDNISLNDLLGMEEQKNVLYQ
                     NTLNFIHNKGANHALLWGAKGTGKSSLIKAIFNEFKDKGLRLVELAKDDLFALVDIID
                     ELREQPFKFILFCDDFSFEKNDDSYKFLKPLLEGSIEAPPQNIIIYASSNRRHLLSES
                     MSDNQGVQVAHTELHASDAAEERLSLSDRFGLWLSFYQGNLNEYLKLVDFYFKDIKCD
                     KELLHKKAKEFANLRASRSGRTAKQFYLAFKESIE"
     gene            14537..15220
                     /locus_tag="ACJFEZ_000476"
     CDS             14537..15220
                     /locus_tag="ACJFEZ_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyladenine DNA glycosylase"
                     /protein_id="HGG0916618.1"
                     /translation="MNGADIFKKLLACNLDFKEFDWLENQGLSDFELLISVILTQNTK
                     WDNVLKALNNLKNARISSLEQLSNLSNLELATLIKPSGFYNTKAKRLKELANKILDTY
                     SNIENFKKNVDREWLLNTKGLGFESVDSILNYLCKREILVVDSYTQRLATHLGYEFEN
                     YEELREFFESGIENEQENLCQILEKKYELFELYQIFHVAIIAFGKVAFKGVKLTLEGE
                     NLIQNLKEE"
     gene            15220..16032
                     /gene="thiD"
                     /locus_tag="ACJFEZ_000477"
     CDS             15220..16032
                     /gene="thiD"
                     /locus_tag="ACJFEZ_000477"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HGG0916619.1"
                     /translation="MKAKGSDLIPVLSIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPAQSVDEQMLAVFEDIVPKATKIGMIGTCELMECVARNLEKF
                     KPQNIVIDPVMFAKNGFALMPQENCDFFKKTIVKFADILTPNIPEAEFLCDFKIKNEE
                     DMIKAAKYLCTQGAKAVLLKGGHSEENANDVLFDGNEIFILKGERIETKNTHGTGCTL
                     SSAIASNLALGKDLYNAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFRFLNEK"
     gene            16022..16654
                     /gene="thiE"
                     /locus_tag="ACJFEZ_000478"
     CDS             16022..16654
                     /gene="thiE"
                     /locus_tag="ACJFEZ_000478"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HGG0916620.1"
                     /translation="MKNDLVLSLYLVASRGKKSDELFLNTLEEAIKGGVSIIQLREKE
                     LSSREFYKLGLKVQKLCKEYEIPFLINDRIDIALALDADGVHLGQEDLEVRFARKILG
                     KEKIIGLSLKNLEQLKDIDGADYLGCGAIKATPTKESSVISFETLSQICEKSPIGVVA
                     IGGIDKELIKELKGIKISGIAVVRAIMDAQNAYLAAKELRQEMNENLSFK"
     gene            16632..17261
                     /locus_tag="ACJFEZ_000479"
     CDS             16632..17261
                     /locus_tag="ACJFEZ_000479"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HGG0916621.1"
                     /translation="MKIYLLNETVFEGVENLVLNEIVFYDFGVNLDEFDALLCTSKNA
                     LKALKKTKNSLNLDINVYAVGQNTAQFAKDMGFKKVQFTPKSYGSELFNHFKEELKNQ
                     KCLYLRAENIASTLNLDLRTYGVDLQEIIVYKNVFKKSKQTILHPAIFIFTSPLSVEN
                     FFKQYDLKKEDKVIAIGQSTAKKLTHLDNLFISSKQDLKECVKLAKSLI"
     gene            complement(17254..17706)
                     /locus_tag="ACJFEZ_000480"
     CDS             complement(17254..17706)
                     /locus_tag="ACJFEZ_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916622.1"
                     /translation="MKRAYILLSLVFLISALGIWLSLNITTSSYIPRFVKDAYYYLQA
                     QILADEKLVKYLLYQAKLDGKECLDSITLHYPNLNDKIKIQYHYPIAQCKNFKFQAIN
                     KDANLSQDGIIIAHMSIALNTQKNVNDEILINKTFILHTKESFWNQTK"
     gene            complement(17703..18371)
                     /locus_tag="ACJFEZ_000481"
     CDS             complement(17703..18371)
                     /locus_tag="ACJFEZ_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916623.1"
                     /translation="MNKAFSLFETILVLILIGFLALFLSRTLWEFYYLNNQQLKMKDL
                     ILKTHLSVLRLEKLLQTCTNITFEPNHISCLLKDDLLYLDDNKEKLLNSSLILENNTS
                     LYSPNSNFKLQLQNRKELYNDEQNIIYALINKEIKKIFIHSENNITASFKGKFIPIQA
                     RIKLFLKEDKIHYELYPYFNNQLEQYSIFMDNVSLFEIEKQKLKICLKEQEQEYCLTK
                     RLFI"
     gene            complement(18364..18669)
                     /locus_tag="ACJFEZ_000482"
     CDS             complement(18364..18669)
                     /locus_tag="ACJFEZ_000482"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916624.1"
                     /translation="MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERL
                     YTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDNIFQFKKLHIQNQDYSLYFYDE"
     gene            complement(18666..19403)
                     /locus_tag="ACJFEZ_000483"
     CDS             complement(18666..19403)
                     /locus_tag="ACJFEZ_000483"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HGG0916625.1"
                     /translation="MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEG
                     FKTLLYKDFNIENKNIILAFKPYALESVAANLKGKAKILISVLANTDFDKLKLIQAQN
                     YARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
                     APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAG
                     VTIKGIKVLEQKGIRGTFFEALNASAT"
     gene            complement(19403..>19778)
                     /gene="fliW"
                     /locus_tag="ACJFEZ_000484"
     CDS             complement(19403..>19778)
                     /gene="fliW"
                     /locus_tag="ACJFEZ_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HGG0916626.1"
                     /translation="KCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLINPYLIR
                     PDYEFEIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNNSMVQV
                     ILDTVAYPNFFQADQIANYIKK"
BASE COUNT         6968 a         2436 c         3698 g         6676 t
ORIGIN      
        1 gataaaaatt ttttaacttt tatcttgctt gttaaaataa tttttaatct tttgcacaaa
       61 tttttcttta ggtttgatta caccactttc cttgccattt gtggcatggt atacactaac
      121 tccatatttg cttgcataaa attgcatgag tagtttttgt agtttgtatt cgctagaata
      181 attaaaccaa gcattattac ttatagctat aataattttt gaatttttat aattttgttc
      241 ttttgtagct tcgtaacaaa tagcattggt aatgatttga tcattgagtt tgtatttgct
      301 ttgtaatggt ccttgatcaa attctgctat attgggcaag aagtattttt gtattgtttt
      361 tttgaaaaat ggaatttctt ccccaaaagg tactaaaaaa tgtttattga gtatatagct
      421 attgcctcct ttaaaaatat atgtactatt gtaagtttta ccctcttgta tgttaaatgc
      481 tccagttatg atgataattt ggtatgatag ctcttttagc attttttcgt ataaggtgtt
      541 tttgagatta aatgcaaaag cggtttctgg caagatgacg agctcttttt tttcattgat
      601 ggcttgaata atttcttcga ttagattgtc tgaatttaca gatacatttt cttgaaggaa
      661 tttttgatct tgagatatat ctgtggagat aagcttatag gatagattta gctcttctga
      721 ttttttttca tcgtattgaa agcctataaa aaatataatt aagagaatag caattttata
      781 atatcttgaa atataatttt catgaataat atatgctagt aaaaaaatac aaataatacc
      841 acgataactt gggtcaaaaa aaccatatac agtataaact ccccaattaa gccaatcaaa
      901 gcctaaagga tgaataaagc ttaaacaaaa aattccgcaa aggcgtaaaa aatcgaattt
      961 aaataaataa caaattctaa agagtattcc ataaactata cctataagga taataactat
     1021 aggtactaaa taatttaagt caaaataaat cgaagaaagt cctatccacc aaaaccaaag
     1081 tatccctaca aaaaatccta tccaaaaata ttgcttagga cttttgcttt ttaaaagcaa
     1141 gactaagccc caaattgcaa gaaatgaact gatcgcttgg gtaaaaatat tttcaaaaaa
     1201 agataaataa atacaatttg aaagcaaaaa tgctataaaa aagactttta ttattttaaa
     1261 aatggtagaa ttagtgttta atttttttgg aataaaggaa aaatatggca gaaaattcaa
     1321 ttttaacttc attgttacct cttgttgtgc tatttgcaat tttttatttt ttggttataa
     1381 gaccacaaca aaaacaagca aaagcacata aacaaatgct tgagtctttg caaaaaggag
     1441 ataaaatcat cactaatggc ggacttattt gtgaagtcgt aaaaccagag gacgatttta
     1501 tcaaagttaa gcttaatgaa gacaatgtta ctgcaaaaat ttcaagagaa tttatagcaa
     1561 agaaaattga tgcgtaattc taaaatcact tatcgattgg ttgtttttat tgcggtattt
     1621 atttttggag ttgttttttc actcccttct tttttgcaat ccgagcgagg agtgaaaatc
     1681 aatttaggac ttgatttaca aggcggactt tatatgctct taggtgtaga taatgaagaa
     1741 gctgtaaaat ctaaaatcaa atccgtcgct tcttctttga gttattcttt taataaagag
     1801 aatattttaa acgatggatt aaatatccat gatgatagtt tggattttac tttattagat
     1861 aatgcagata tagttaagac tgagaatttg cttaaggaaa ttaatggact taatgtgcaa
     1921 agagaagata tgcattatac aatttctttt acctcagaag aggttaaaag tatagagaat
     1981 tttgctcttt tgcaagcagt tgagactatt agaaatcgtt tggatcaatt tggcttagca
     2041 gaaccaacgg ttgcaaaaca aggcgaagat aaaatcttag tcgaattggc aggaattaaa
     2101 accaaagagg atgaactaag ggctaaagag cgcattacta aagcagctca tttgcaactc
     2161 atggaagtgg atgattctaa aatgagtcaa gcttctaata tgagtgatgc tgaagcggca
     2221 agctatgggc ttgttttagt tcctgattct agaaatccaa atttaaaata tcctttaaaa
     2281 agcattccta ttttagatgg ttctatgctt acagatgcta gagtagggct tagtgatacg
     2341 agtaattatc ctgttattaa ttttacttta aatgctgaag gttctaagaa atttgctgat
     2401 tatacaggat caaatgttgg aaagcgtttg gctatcgtgc ttgataataa agtatattct
     2461 gctccatcga ttaatgaacg cataggcggt ggaagtggtc aaatcagcgg ggcttttact
     2521 caagaagaag cacgagatgt ggctgtggct ttaagaagtg gggctttact ggcgccagtt
     2581 aaacttttag agcaaagaag tataggtcca tctttgggtg ctgatagtat taaaatgagt
     2641 atgatagctc ttataggtgc ttcgattttt atcgtggtat ttatggtgct ttattatggt
     2701 atggcaggaa tttttgcaaa tattgcaatg ctcgttaatg ttttggttgt tgtggctgta
     2761 atggcaatgt ttggtgcaac tttgacttta ccaggtatgg caggacttgt tttaactgta
     2821 ggtatggctg ttgatgccaa tgttatcatt aatgagcgta tcagagagct tttgcgcgag
     2881 ggtgcaaata tcaaagcaag tatagagcaa ggttataaaa atgctatgag cgcaataata
     2941 gattctaata ttacctctct tgtaacctct atagcacttt atgcttatgg aacaggtgct
     3001 gttaaaggat ttgcagtgac tttaggaatt ggtattgttg tttctatgat tactgctatt
     3061 tggggaacgc atggaatgtt tgattatttt atgcgccgta ttgaaaaaag taataataca
     3121 agattttggt ttggttatag gagaaaataa tgcagttttt tagcgaaaag aaaatttatg
     3181 attttatgag aatgcgtttt gctgcaattt ctctttctat cgttttattt tttgggtcta
     3241 tttatttgct ttgggatagg ggtttgcaat ttggtattga ctttagtgga ggtactttaa
     3301 tccagcttaa atacgataca gcagctccca ttcctcaaat tcgtgaaatc ttagaaaaac
     3361 aaggcagttt tcaaaattta tccgtaactg aatttggaag caaagaagag attactatcc
     3421 gttttttagg aagcaatgat agcttaggta gtgatatagg agagcatatt agcacccttt
     3481 taaaagatac gggtaaattt gaagtgcgtc gcgcggatgt tgtgggtcca aaagtgggcg
     3541 atgagcttag aaataaaggt attatggcta tcattgtatc cttagtagcg attttaattt
     3601 atatcgcaat acgctttgaa tggcgttttg cattagcggc aattattagc gaaattcacg
     3661 atgttgtgat tactttaggg gcgatttcat tgtttaaaat cgatgtaaat ttagatacct
     3721 tggctgcggt tttaacagtg cttggatatt ctttaaatga tacaatcatc atttttgata
     3781 gaattagaga gggaattaag acgagtaaaa aaagcgagct tgctcctatt attaacgaaa
     3841 gtgtttcagc aaccctatct agaacggtat taacttcagg tcttactttg gccactgttg
     3901 tcatacttta tttttttggc ggagagatga tgcaaggatt ttctttggct ttgatagtgg
     3961 gtattgttgt aggaacttta agttctattt ttgtagctag tccgacttta ctttggttta
     4021 aattcagtgt tattgatttt agaaataaag agcttgaaaa acttaaaaga aagcaagaaa
     4081 aagaacgcaa tcgtgcaatg tatgaaaaag gaacggttta aaggaatatt atggcttatg
     4141 atgcaaattt aatagaaaaa agatggcaag aaatttggga caaaaatgag tattttgaac
     4201 ccaaagatga tttaacccta cctaaaaaat atattttatc tatgtttcct tatccaagtg
     4261 gtcgtataca tatgggacat gtgagaaatt atagtatagg tgacgctatt gctagatatt
     4321 atcgcaagat aggttataat gttttacatc ctatcggttt tgatagtttt ggtatgcccg
     4381 ctgaaaatgc agctattaag cacaaaattc atccaaaatc ttggacttat gagaatatag
     4441 cctatatgaa aaatgaactt ttttctttag ggttttcttt ttcaaaaaaa agaatgcttg
     4501 caacctctga tccgctttat acaaaatttg aacaagaatt ttttatcaaa atgtatgaaa
     4561 aaggtttgat ttataccaaa gaagcgaatg taaattggtg cgagcaagat caaaccgttt
     4621 tggcaaatga gcaagtagaa gatggaaagt gttggcgttg tggacatgaa gtggttcaaa
     4681 aaaagatgcc agggtattat gtaaaaatta cagcctatgc agaggaactt ttaagcgaac
     4741 ttgaaaattt aaaagataag tggccttctc aggttttaac catgcaagaa aattggatag
     4801 gtaaaagtga aggtttggaa ttttctttaa atttagacaa agaaagcttg gaaaaaacaa
     4861 agacacaatc ttttgaagtt tttactactc gcgcagatac tatttatggt atttcttatg
     4921 tagctttagc acctgaacat aaaattgtgc aaaatttaat acaagcaaat tgtttagatg
     4981 atgaaaaagt agaacaaatt aaaaatatgc aaaaacaaag cgctagggaa agacaaatag
     5041 ctgataaaga agggtgtttt ttaggaattt acgctatcca tcctttgact caagaaaaac
     5101 tccctgtttg ggtggcaaat tttgttttag ctgattatgg tagtggggct gtaatggctg
     5161 ttccagctca cgatgagaga gattttgaat ttgctaataa atacaaactt gaaatcaagc
     5221 aagtgattga gtgtgaagat gcacagcttc ctcatgttca aaaaacagga aagcttatcc
     5281 aaagtggtga atttaatggg tttgattgca atgaagtaag agcgagaatt atttcaaaat
     5341 ttgaagatga aaagttagga aaaagggtta ttaattttaa aattcgcgac tggggagttt
     5401 ctcgccaaag atactggggt gctcctatac ctatggtaaa atgcaaaaat tgtgggattg
     5461 tgcctcaaaa aattgagaat ttacctatta ccttgcctga agatattcaa atcacaggag
     5521 agggcaatcc gcttgaaaaa catcctattt ggaaaaattg tacttgtcca aaatgtggac
     5581 aagaagcaca aaaagaaagc gatactttgg atactttttt tgaaagttca tggtattttg
     5641 cacgctttgc aagtgatgaa aaaacatggc aagaaaaggc tttggataaa gaaagtgtga
     5701 agtattggat gaatgttgat caatatatag gtggcataga gcatgccatt ttacatttgc
     5761 tttatgcaag attttttcaa aaagttttaa aagatttagg ctatttagag gataatgagc
     5821 cttttgctag acttttaact caaggtatgg ttttaaaaga tggtgccaaa atgtctaaat
     5881 ccaaaggaaa tgtagtcgat cctgatgata ttatcaataa atacggagcc gatactgcaa
     5941 gactttttat cctttttgct gcacctcctg ctaaagaact tgaatggaat gatgatgcgg
     6001 ttgagggggc ttataggttt atttgtaggc tttatgatag ggctcaaaat gtaagagctg
     6061 gggagctttt agaatttaag catgatgatt taaataagga agaaaaatac gctagattga
     6121 aagtgtatga agctttgaaa aaatcttttg aagtttatac tcaaagcttt gcttttaata
     6181 ccctaatcgc tgcttgtatg gaagcgctta atgctttagc tccttgtaaa aatgaagctt
     6241 tagaacagga agctttttat attatcttaa atattttaga acctattatt cctcatgtgt
     6301 gctttgaatt aagtgataag ctttttaaat gtgagaattt taaggtttta aatttaaaag
     6361 aagaagtttt tgtaaaagat agtttaaatt taggcatcag cgtaaatggc aaaaagcgtg
     6421 gagaaattga agtttcaagt tcggcaagtc aagatgaaat tttagagcta gcaaagcaaa
     6481 aagtttcaaa atggctagag ggtaaaaaca tagttaaaga gatttatgta gagggaaaac
     6541 tggtaaattt ggtgataaaa tgaaaggaat tttatttttt atagtagctt tgtttttagg
     6601 ggcgtgtggt tatgttccaa cttcaaaagt agcggataat atttttgatg ataaagtata
     6661 tgtgaatgtg gaattaagcc ttcaagatcc tagaaacagt attttcgtag ccgatacgct
     6721 taaagagatg gttatttcaa aattgggacg aagattggct ttaaaacatg aggcggatga
     6781 tgtgatcaat gttaggatga ataatcttga atttatccct ttaatctatg atcaaaatgg
     6841 ttatgttgta agctacaaag ccaaacttaa tctagaattt aaagtggtat ttaaggatgg
     6901 tagcgtcgaa cattttaata caagtggaag ctataatttt gatatatcac ctaacagtat
     6961 tatcagtgat acagcgcgct acgaagctat acgctcagct tctagcgaag cttttgatga
     7021 atttatttca gtaatagcta tcaagggaca aaagcgtgct gcccaatatt aatgaaatag
     7081 caaaagaaac tttaatcaca cttaaggata gaaagcttcg tcctacccct gaaaattata
     7141 cagaaatttt tgaagagctt tctaaaaaat atggtttaat aagctcaaat aaagccaagc
     7201 ttgaaaaata taaagctttg cttttaccaa actatcaaca agagttaaat tctaaatcca
     7261 tccgtacttt agaagaatta ataagctttt taatctccgc attaaataga caaaatggaa
     7321 agcaatttag tgaatttttc gattttttgg ctaccttatc taaaagtttg caagtaagta
     7381 aagataaaaa aatcagagac ttggctaaaa ttacttctat tagaatttca aaaactatgg
     7441 acagcgaaag tatttatttg ctttctaaaa aatggaaaga atttgaaaaa aattataacg
     7501 aaaatgattt agaaggcgga ttaagaagat atggcatcgc aaaatatgat gattttgata
     7561 ccgtggttaa aaaactttta aataagttag aagaaagaag tttagaagtt tttgctgaac
     7621 ttttagcctc ttgtttgaat ccatctttgg ttgaggatct taaaattcat ggttttgcac
     7681 aaaatttact tcaaaaaccc tttcttttaa gtgaaagcgg ttttaaaaat gaacttttag
     7741 aatttgtcaa tcgtcgtgtg atggttgata atatgtatgt gcaaaaaaat ttaaattttt
     7801 ttaatgataa cttgaaaaag atttatgaac tttttatgct gttaaacaag tccaatgagc
     7861 aaaatatgga ttttataaat accttaaaac ccgataaaca aggggaaata aaacttagtt
     7921 ttgaactttt aaaacaaaaa tttatacaac ttaatgagag gattaattct ttaaatgcac
     7981 aaattgaatt tacgcaaaat ttagaagagc gtgaatcttg gagtgtttta aaagagcttg
     8041 agagattgga tgaaaattac aataaatata aagttaatta ttctttagca ttattttcta
     8101 taaaaaatta tcgttttatt atggaaaggt atggggtagg tagcttaaat gaaatttttg
     8161 tgcgttttaa aaaaatttta aaagataatt gctctgaatt tgatgagctt tggatgatag
     8221 atgaaaagag ttatcttatt atttcacctg gaagaaataa agaaaaagtg gcacagcttg
     8281 tccgagaaaa tttaaagact attgaaaatt ttcgttttat ttataagcaa gatattatta
     8341 ctccaaaaat tatcacagct tatttagata agcaaagtaa gccccatgct aatattttag
     8401 aagaattaat gaatcaaatt tcaaatttag atgaaagaaa caatgcaaaa gatcagtaag
     8461 gttgatgaat ttttagtaca aaaaagtaca aattatgaca agatcgatcg ttttgttatg
     8521 tttagaatgt atgaaaaata taaaacaaat ttttcgatta aacccattgt gcatattata
     8581 ggaaccaatg gaaaaggaag tacgggtaga tttttaaccc agcttttaga aggcttgggt
     8641 tttaaagtgg ggcattatac cagtccgcat atttttgaat ttcgtgagcg cttttataaa
     8701 aatggagata ttattagcga aaatgattta gagctcgcgc atgaaaattt gttagatatt
     8761 tttaaggata atttaaaaaa acttagctat tttgaatatg ctactttttt agcagtcgag
     8821 ctttttaaag attgtgatta tgcgattttt gaagcaggag ttgggggtga atatgatgca
     8881 acttctgttt ttgataaaag cttgagtatt tttacaaagg tgggatttga tcatactcaa
     8941 attttaggag atagtttaga aaagattgct agaacaaaat ttaaagttat ggcaaaacaa
     9001 gctttgattt caagcgagca agatgaaaga gttttgcaaa tggctcaaaa aatagcattt
     9061 ttaaaaaata caaaattata tttttcatgg cagttaaagg atgaaaattt aatgcaatta
     9121 aatgagtatg ttcaaaaata cgatttgcct gaatttttaa gacacaattt aattttagcc
     9181 ttaaatgcat tagaaatatt actttctaaa gaaaaactta gtcaagcttt gttaaaatta
     9241 ggaaaattaa atttaaaggg acgctgtgag caaattgcgc cccatttgta tgtggatgtg
     9301 ggtcataatg ttatggctgc tagcgccctg tgtaaaaaat ttagtggcga aaagcttgtt
     9361 ttaatctaca attcttatct tgataaagat atttttgaga ttttaaaaac attaaagcct
     9421 attattgata caataaaaat atataaatat gtaagtttag aaagaagatt ggctaatgat
     9481 aaaatttatc aagttgccaa tgctttaaat cttaagtgtg aagaatttgt ttctttagat
     9541 gaaaagaaaa aaactttagt ttttggttct ttcgctttag tcgaaagttt tttaaaggag
     9601 tggagtgata aaaaataaat ttaccatcac tattacagat attaatggtt caaggcattt
     9661 ttatttaaat cagatcatta aaaaaatcgt tctttatgta gtagctttta tatttttgtt
     9721 tttaattttt agcggttttt atattaaata tcttgatagt aaactgagtg atattagtac
     9781 taaaagagaa gagcttttag caaaaagcaa ggaattagaa tttgctaatg cgcaaatgca
     9841 aaaaaatgtt gaagaaaaag caaagcaata tgcagctata gaagataaga ttgcttcttt
     9901 tgaagaagct ttgggcttag aagctgaaaa taatcttact attacagata ggcttgataa
     9961 tttaaagctt acaaatgagc agcaaattgg gattttagga caaattccta atggatggcc
    10021 tattgaaaat aaaggcgtta cgggaaattt tggatggagg gaacaccctc ttttaaaaag
    10081 aagagaattt catccaggta ttgatttaag agcagcgata ggtacgccta tatatgcacc
    10141 tgctagtggg gtggttgagt tttcaggata tagtgataat ggttatgggt ataatgtgat
    10201 tttgctacat aattttggct ttaaaactgt ttttgctcat atggtgagaa aagatgttgt
    10261 taaagcaggc cagtttgtca ataaggggca actgataggc tatactggca acacaggact
    10321 ttcaacaggt ccgcatttgc actatgaagt aaggtttatt aataaaacct tagaaccttt
    10381 atatttttta aatttagaaa gaaaaaatat gaatgagttt tttaatcaag aaaggagagt
    10441 tccatggcaa tctttaataa aagcggtaac ggcacagcac ttagctccag ttccgaaaca
    10501 acagtaattt catcaggtgc tagaatagag ggtgaatttt attttgcttc tatgcttcat
    10561 gtggatggag agcttaatgg tatagtgcat tctgaaagca tagtagttat aggaaaaaat
    10621 gggaatttaa aaggtgagct taaggctgat aagatagttg ttaatggctg ctttgaaggc
    10681 gatttggagg cagatagcct tgaaatttta gcaggtggcg tggttagcgg gaatatcagc
    10741 attaaagact tagctataga aaatggcggt cgttttaatg ggactagtaa aataaagcaa
    10801 gaagagcctg taaggttgtt agagaatagc tcagaataat gcaagcaaat ttttttgagt
    10861 atttacaaga ttcaaatata gcacaattag tgctttgcga agatgataaa gaatcttttt
    10921 tgctttctca agttgctctt tttaaggatc taaaaacctt tgttttacct gattttagag
    10981 ctgaattcgg agatgattta agggcttttt ccaaggagct ttttgagctt tgcaaggttt
    11041 taaatgctta tcacaaggaa aaagatacta aaattcttat ttcccctttg tctaccatac
    11101 ttaaaaaatt acccggtcaa aaacatttaa aaaattacaa actttctaag aaaaatgttt
    11161 ttaatttaag tgaatttaaa aatgagctca acaagcttgg atatgaattt gtggatatgg
    11221 ttcaagataa gggtgaggta agtatacgcg gagagattat tgatatattt tgtatcaatg
    11281 aagaattacc tactagggtt ttgctttttg gagatgagtt ggaaagcatt agaaaatttg
    11341 atcctatgaa tcaaaaatca tttcccaaag aatatgaaga acttgaaatt tgtccttttt
    11401 tgacatattt ttctgaggaa aattatgaaa attttaaaga caaattagaa aatttcaata
    11461 gcgatgtttt gattaatgat attaattctt taggattttg gtgtattgat gatttttgtg
    11521 attatttaga acttgatttt ataagtatca aaaaattcaa tcaagaagaa tgggataaag
    11581 atcttagcaa aatcaatgct aaaattatac cccaagcctc tgtttataag gatttaaaaa
    11641 gttcttacaa taaagacttc ttttctttgc aacaaaataa aaaaattacg attttggcta
    11701 aaaatgaagc tttgtttaag gctttagagc ttgaaaatac acaaaatatt tcttttcaaa
    11761 aaagcgattt gatccttaat ttaattagca atcaagaact tatcatctca ttaaatcata
    11821 aagaaaaaca aaaatataag cgtaaagcaa atttgattat agatgagtta aaaattggtg
    11881 attttatcgt tcatgaggat tatggtgtgg gtaaattctt aggtcttgaa atgattagca
    11941 ttagtggggc taagaaagaa tttgttgcca ttgaatatca aaatagcgat aaacttcttt
    12001 taccggttga aaatctttat atgatagata agtatttagg agctagtgga ggcataccgc
    12061 ttttagatcg cttgggaaaa atgactttta tcaggctaaa agaaaggcta aaaaccaagc
    12121 ttttggctat tgcttctgag attgttatta tggcggctaa aagagcttta attaaaccaa
    12181 aagaaatcaa gatagattat gcagatcaag cttattttgt ttcaaaagct ggattttctt
    12241 atacacaaga tcaaaataag gcttgtgaag aaattttaaa cgattttgaa aacggcaaag
    12301 tgatggatag acttttaagc ggtgatgtgg gttttggtaa aaccgaagtt gcgatgaatg
    12361 ctatttatcc cgtggtaaaa agcggttttt gtgctttttt ctttgcgcct accacgcttt
    12421 tatctcatca gcattataag agtttaaaaa agcgttttga gctttttggc attgaagttt
    12481 ttaaactgga tcgctttaca agcactaaag agaaaaaaac tttaatgtta aatttagaac
    12541 aaaacaaagc ctgcgtggta attggcaccc acgcactttt aaatgtagaa tgtgaaaatt
    12601 tagcccttgt tatcattgat gaggagcata aatttggagt aaaacaaaaa gaaaaattaa
    12661 aagaattaac ccaaaattct catcttttat ctatgtctgc tactcctata ccaaggagtt
    12721 taaatcaagc tttaagctct ataaaatctt atagtgtttt acaaacccct ccagaagata
    12781 ggcttgatgt tagaaccttt gtgaaagaaa atgatgatgc gcttttaaaa gaggctataa
    12841 caagagaatt aagacgcggc ggacaaattt tttatataca caatcatatt gcaagtatag
    12901 agcaatgtaa aaaacattta cttgatttat ttaaaaattt aaggattttg attttgcatt
    12961 ctaaaattga tgcgaagatt caagaagaag aaatgcttaa atttgaaaac aaagaatacg
    13021 atttactttt aagcacttct attgttgaaa gcggtattga tctgcctaat gcaaatacta
    13081 tgatagtcga aagaagtgat agatttggaa tggctgattt gcaccaatta cgcggccgtg
    13141 taggcaggag tgataggcag gggtattgtt attttttagt tgaaaataaa gaagaactta
    13201 ctcaagatgc acttaagcgt cttgtttctt tagagagtaa ttcttattta ggagcaggtt
    13261 cagttttagc ttatcatgat cttgaaattc gcggaggtgg aaatttgcta ggtatcgatc
    13321 aaagcggaca catagagcaa attggactta gcttgtatct taaaatgcta gaagatgagt
    13381 taaatgcact tactaaaaaa gaaagctttg aagagaaaaa aatagactta aaacttacca
    13441 tcaatgcttt tttaaattca gaacttatca atgaagatcg tttaagattg gagctttatc
    13501 gtagacttag taaatgtaaa aatatagatg aagtctatga aattgaaggt gagatagagg
    13561 atcgctttgg gaaacttgat ctttatacga agcaattttt aatgctgatt ataattaaaa
    13621 ttttagcttt ggggaaattt aaaaccataa gcaattttga gcaaaatata caatttgtaa
    13681 agatcaatga tgaaaaagag tttattaaag caagaagcaa agatgatgat gatattatag
    13741 aagcagtttt aacgcattta aggaaagata aataaatgat tgactgggat aaaacttatg
    13801 cggcaattta tagatctaga aaagattatt taaaacccat tatagatctt gataatatca
    13861 gcttaaatga tttattgggc atggaagaac aaaaaaatgt cctttatcaa aatactttaa
    13921 attttatcca taataaagga gcaaatcacg cacttttatg gggtgctaag ggtacgggta
    13981 aatcaagctt gattaaggct atttttaatg aatttaaaga caaaggctta aggcttgtag
    14041 agttagctaa agatgattta tttgctttag ttgatattat cgatgagtta agagaacagc
    14101 cttttaaatt tatattattt tgtgatgatt tttcctttga aaaaaacgat gatagttata
    14161 aatttttaaa gcccttgtta gagggtagta tagaagcacc tccgcaaaat attattattt
    14221 atgcgagttc taatagacgc catttattaa gtgaaagtat gagtgataat caaggagttc
    14281 aagttgctca tacagagctt catgcaagcg atgcggctga ggagagattg agtttaagcg
    14341 atagatttgg cctttggctt agtttttatc aaggaaattt aaacgagtat ttaaagcttg
    14401 ttgattttta ttttaaagat ataaaatgcg ataaagagct tttgcataaa aaagcaaaag
    14461 aatttgcaaa tttaagagca agtagaagtg gaagaactgc aaagcaattt tatttagcct
    14521 ttaaggagag tattgaatga atggagctga tatttttaaa aaacttcttg cttgcaattt
    14581 ggattttaaa gaatttgatt ggcttgagaa tcaaggcttg agcgattttg agcttttaat
    14641 ttctgtgatt ttaacccaaa atacaaaatg ggataatgtc ttaaaggcgt taaataactt
    14701 aaaaaatgcg cgaatttcaa gcttagagca gctttcaaat ttatccaatc tagagcttgc
    14761 tactctgata aaaccaagtg gattttacaa taccaaagct aaacgcttaa aagagttagc
    14821 aaataagatt ttagatactt atagcaatat agaaaatttt aagaaaaatg tagatcgaga
    14881 atggctttta aatactaaag gtttaggctt tgaaagcgtg gatagcattt taaattatct
    14941 ttgcaaaaga gaaattttgg ttgtggatag ctatacgcaa agattggcta cacatttggg
    15001 ttatgaattt gaaaattatg aagaattgag agaatttttt gaaagcggca tagaaaacga
    15061 gcaagaaaat ttgtgtcaaa ttttagaaaa aaaatacgag ctttttgaac tttatcaaat
    15121 tttccatgtt gcgattattg cttttggaaa agttgccttc aagggagtaa aattgacttt
    15181 agagggtgaa aatttgattc aaaatttaaa ggaagaataa tgaaagcaaa aggaagtgat
    15241 ttaattcctg tattgagtat agctggaagt gattgtagtg gtggggctgg catacaagct
    15301 gatcttaaaa cttttagtgc tcacaatctt tttggcatga gtgttgtttt gagtgtggta
    15361 gctgaaaata cagcaagagt gatttcagtt catgacatac ccgctcaaag cgtggatgag
    15421 caaatgcttg ctgtttttga agatatagtg ccaaaggcta ctaaaatagg aatgatagga
    15481 acttgtgagc tgatggagtg cgtggctaga aatttagaaa aattcaaacc ccaaaatata
    15541 gttatcgatc ctgtgatgtt tgcaaaaaat ggttttgctt taatgccaca agaaaattgt
    15601 gattttttta aaaaaaccat agtgaaattt gcagatattc ttacgcctaa tatcccagaa
    15661 gcggaatttc tttgcgattt taaaataaaa aatgaagaag atatgataaa agcggctaaa
    15721 tatttatgta cgcaaggagc aaaagctgtt ttgcttaaag gggggcatag tgaagaaaat
    15781 gccaatgatg tgctttttga tggtaatgaa atttttattt taaaaggcga acgcatagaa
    15841 acaaaaaaca ctcatggtac aggttgtaca ctctcttcgg caattgctag taatttagcc
    15901 ttgggaaaag atttgtataa tgctgtaagt gaggcaaaag aatatgtaag aaatgcgatt
    15961 tattattctt taaatttagg gaagggctgt gggccaacta accatttttt caggttttta
    16021 aatgaaaaat gatttagttc ttagtcttta tcttgtagca agtcgtggaa aaaaaagtga
    16081 cgagcttttt ttaaacacgc ttgaagaagc gataaagggt ggagtaagta taatccaact
    16141 tcgtgaaaaa gaattaagtt caagagaatt ttacaagctt ggcttgaaag tacaaaagct
    16201 ttgcaaggag tatgaaatac cctttttaat caatgataga atcgatatcg ccttggcttt
    16261 agatgctgat ggggtgcatt tagggcaaga ggatttagaa gtgcgctttg caagaaaaat
    16321 tttaggtaaa gaaaaaatca taggcttaag tcttaagaac ttagaacaat taaaagatat
    16381 tgacggggct gattatttag gttgtggtgc gattaaggct actccaacta aagaaagttc
    16441 tgttataagt tttgaaacct tgagtcaaat ttgtgaaaaa agccctatag gcgtggtagc
    16501 aataggcggg attgataaag agctgattaa agagctaaag ggcattaaaa taagtggcat
    16561 tgcagtagtt agagccataa tggatgcgca aaatgcttat ttggcagcta aagagcttag
    16621 gcaagaaatg aatgaaaatt tatcttttaa atgagactgt ttttgagggt gtggaaaatc
    16681 ttgttttaaa tgagatagtt ttttacgatt ttggtgtcaa tttagatgaa tttgatgctt
    16741 tactttgtac ttcaaaaaat gccctaaaag ctttaaaaaa aacaaaaaat agtttaaatt
    16801 tagatattaa tgtatatgca gtagggcaaa acactgctca atttgctaag gatatgggtt
    16861 ttaaaaaggt tcaatttacg ccaaaatctt atggaagtga gctttttaat cattttaaag
    16921 aggaattaaa aaaccaaaaa tgcctttatt taagggctga aaatatagct tctactttaa
    16981 atttagatct tagaacttat ggggtagatt tacaagaaat cattgtttat aagaatgttt
    17041 ttaaaaaaag caagcaaaca atccttcatc ctgctatttt tatttttact tctcctttga
    17101 gtgtggaaaa tttttttaaa caatatgatt taaaaaagga agataaggtc atagcaatag
    17161 ggcagagcac agcaaaaaaa cttactcatc tagataatct ttttataagt tctaaacagg
    17221 atttaaaaga gtgtgtgaaa ttggctaaaa gtcttattta gtttgattcc aaaatgattc
    17281 ttttgtatgc aagataaagg ttttatttat taaaatttca tcattgacat ttttttgtgt
    17341 atttaacgct atactcatat gcgcgattat gataccatct tggcttaaat ttgcatcttt
    17401 gttgatcgct tgaaatttga aatttttaca ctgggctatg ggatagtggt attgtatttt
    17461 gattttatcg tttaaattag gatagtgaag cgtgatagaa tctaaacatt cctttccgtc
    17521 taatttagct tgataaagta aatatttaac gagtttctca tcggctaaaa tttgggcttg
    17581 taaataataa taagcatctt ttacaaatct tggtatataa cttgaagtgg tgatatttaa
    17641 actaagccat atccctaaag cactgattaa aaataccaag gatagtaaaa tataggctcg
    17701 tttcatatga ataacctttt tgtaaggcaa tattcttgct cttgttcttt taaacatatt
    17761 ttaagttttt gtttttctat ttcaaataag cttacattat ccataaatat agagtattgc
    17821 tcaagctgat tattaaaata aggatagagc tcataatgaa ttttatcttc tttaagaaat
    17881 aattttattc tagcttggat agggataaat ttacccttaa aagaagcagt gatattattt
    17941 tctgaatgaa tgaatatttt tttaatttct ttatttatta aagcataaat gatattttgc
    18001 tcatcattat acaattcttt tcgattttga agttgaagtt taaaattact attgggagaa
    18061 tataaacttg tattgttttc taaaataagg ctagaattta ataatttttc tttattatca
    18121 tcaagatata ataaatcatc tttaagcaaa cagcttatat gatttggctc aaaagtaata
    18181 ttagtgcaag tttgaagcaa tttttctaat cttaacacac ttaaatgagt ttttagtatc
    18241 aaatctttca tttttaattg ttgattgttt aaataataaa attcccacaa tgtccttgat
    18301 agaaaaagtg ctaaaaatcc gattagaatt aatacaagaa tagtttcaaa aagactaaaa
    18361 gctttattca tcgtaaaaat atagggagta atcttgattt tgaatatgta attttttaaa
    18421 ttgaaagata ttatcattta caaagttttc tttaaaatca aaagttttta aattctgtat
    18481 atgaagtttt atatctcttt gatgagggtc ggtataaagt ttatcttgca gtgtgtataa
    18541 tctttcaaaa taatttaaat aatcatgatt gtcatttagc tgataaaata atttagaaat
    18601 acttgtaaaa attaatccta ggataattat acaaagaatt aattctaaaa gcgagaatgc
    18661 aactttcatg ttgcactagc attaagagcc tcaaaaaaag tcccacggat acctttttgc
    18721 tctaatactt taatcccttt tatggtaaca cctgcaggcg agcagatatt ttccttaatg
    18781 atggctgggt gctcgttttc tagcaaggct gcagcacttt taaaaagcga acgagtgaga
    18841 tttaaactca gctcttttga taatccttca tacacgccag cattagcaat gctttcagct
    18901 actaatgcta aaaaagcagg agcgcaaccg cttatagcca tggcagcatt catttgtttt
    18961 tcttcgttta actcataagc cttgccaaaa gtatttaaaa tttctatgac ttcatcttta
    19021 aaatttgaat tttttaaaac ataaggagtt gtggaagctt tatatttagc tgctgtattt
    19081 ggcattatcc ttgcataatt ttgggcttgg ataagtttta atttatcaaa atccgtattg
    19141 gctaaaactg aaattaaaat ttttgccttg ccttttaaat ttgctgcgac actttctaag
    19201 gcataaggtt taaaagctaa gataatattt ttattttcta tattaaaatc tttatagagt
    19261 aaagttttaa aaccttcttt ttctaaaatt tgaagctttt ctaaatttct accgactata
    19321 tagatattat aagaatcttt taatccataa gccaaagctt gcgccatcgc accattagca
    19381 agtatatata aatcagcttt cattacttct taatataatt tgcaatttga tccgcttgaa
    19441 aaaagttagg ataagctaca gtatctaaga ttacttgcac catggaatta ttatcaagat
    19501 taataaccac aggagctagg aaatttacag tagattcttc tatactttta gcaattgcta
    19561 ctatattgaa aattttcata tttgactctg gtgtcaaaga aagcaattct tggtagtatg
    19621 taggtatctc aaattcataa tctggtctta taagataagg attaataaga acaaaagaaa
    19681 aatcttttcc atcaagactt ttaagtctta caaacacttc atcaatggtt gaaaattcca
    19741 tatttttggt ttcttcaaaa cctaagatag ggcattta
//
LOCUS       DBBXRO010000018        19763 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.018, whole genome shotgun sequence.
ACCESSION   DBBXRO010000018 DBBXRO010000000
VERSION     DBBXRO010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19763
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.018"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..880
                     /locus_tag="ACJFEZ_000485"
     CDS             <1..880
                     /locus_tag="ACJFEZ_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DnaJ C-terminal domain-containing protein"
                     /protein_id="HGG0916627.1"
                     /translation="LGVSKNASADEIKKAYRRLARQYHPDINKEKGAEEKFKEINAAY
                     EILSDEKKRAQYDQYGDSMFGGQSFHDFSKNTGGVNLDDILKDLFGGGFGGGSSRGSR
                     FNGFSSKGFNTGFGGFGGFEEEDLDSTIELSIPFEKAVVGGEYSFNLQGETIKFKIPH
                     GIKQGEKLRIRNKGKNGRNGTRGDLIVKVKLGESEIYQREDDDLYQKVDISLKTALFG
                     GKVTVNTLKENKKEATITIPANSKNGQKIRLKGYGVQNRKSDIYGDMYLVLNVVLPNT
                     ETLDEKLIEMLKEKLS"
     gene            897..1271
                     /gene="hspR"
                     /locus_tag="ACJFEZ_000486"
     CDS             897..1271
                     /gene="hspR"
                     /locus_tag="ACJFEZ_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HGG0916628.1"
                     /translation="MEHHYNEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGVNLAGVDVILKLKNQLHEFENLIDELRLELSKQQNP
                     NASSKAVVKHKNSFDLIFYEKK"
     gene            1272..2894
                     /locus_tag="ACJFEZ_000487"
     CDS             1272..2894
                     /locus_tag="ACJFEZ_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HGG0916629.1"
                     /translation="MDNFLEIFLITAALAIVLNVIFKKFEIPTIIGYIAAGEIISKIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLIAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIGQLLLTTLLSAVILIALLFFIGKYLVDRIFRLIIRASSQEIFIS
                     TILFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLHIVAQNWFIICVLTLLIMGLKFGIVCGFLFLYTKKRVALKTAFSIAQVGEF
                     ALAIFSLLQAKSMLDVETAQILIVVSIVTMIITPFVLNNIRKIANVVEDMTLNTNVVQ
                     QSTHSTLKNHLVIFGYGRLGQEIVQKIKNTGVPYLVLESDLNLVELGISRGENVVFAN
                     AAQEETLKIANITECAVAIVTITNEAKLEMICQVLASYPKPIDTIIHVNGSLEKILFS
                     SIDENIRIVRSEKVIARNLVQEALECRIHKNT"
     gene            2904..3236
                     /locus_tag="ACJFEZ_000488"
     CDS             2904..3236
                     /locus_tag="ACJFEZ_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916630.1"
                     /translation="MAKIDEKTLRVKYLRALEKFANAAISALKKENFDKEKFQERMEK
                     NKKIVEKCEAVNLNSSYNKSLENFVNHCLDFSKQKEELLSLANALDKLKKGEKKEKHK
                     TYLKDYYD"
     gene            3229..3849
                     /locus_tag="ACJFEZ_000489"
     CDS             3229..3849
                     /locus_tag="ACJFEZ_000489"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0916631.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRNELNLSPLSREKIMQTI
                     NTPNVDWAKELYSIDNFHHSSFKDGFEKYFIKHYEQSVVLFEGVKEILEFLKEQNCFL
                     AIATNAPQSSLSSILKKHEIIPYFDKILGVSLGIEPKPHPMMLDLLKSEAPHKISVFI
                     GDSQKDRECAKNANVPYFHAKWYQKDLQENEFSNANELKNFLEKYL"
     gene            3902..5896
                     /gene="glyS"
                     /locus_tag="ACJFEZ_000490"
     CDS             3902..5896
                     /gene="glyS"
                     /locus_tag="ACJFEZ_000490"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HGG0916632.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWKDVLEDYRLVSDFKF
                     YYTPRRLVIFHKNFASKQEDSFAEFIGAPKNVAYKDGQLSAAGQSFLQKAGISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEVLGEMIHQFLKSLNFGKSMRWGANSFEFIRAIRSI
                     VCILDDNLVEFESYGVKSAKKTFIHRSVSYDLQEFNNAKEYFSLLEKNYIILDPLQRK
                     ERILKQFKLLESQNNIQIGEDEELLAEVIAITEYPNALLGSFEEEYLQIPSEVIITSM
                     RENQRYFAVFNEKGLSNHFIVVSNAVCEDYSKIIHGNERVLRARLSDAMFFYQNDLQS
                     GLNPEKLAKMTYLEGLGTMQDKSLREIKIAEVLCQMLNNDKIANISTAIKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYEICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQALLEKLASHYKNFD
                     MQILKDFIFERLYTFYSVNASFIKAVLSSKSTDLIHINQSVKALIELSKKANFQENFT
                     TFKRLANIANKTSHKVDENLFVEEAENKLYKAFKEKIQAHSLQEKLENLFSLKPFIDE
                     FFDKVMINAKDEKLKNNRQALIYEIYEEFLKIADLKELSL"
     gene            5893..6714
                     /locus_tag="ACJFEZ_000491"
     CDS             5893..6714
                     /locus_tag="ACJFEZ_000491"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HGG0916633.1"
                     /translation="MKAFFLFLSLALWLFGAQNFELIKGQALFLELDKKDFISLKNED
                     KILATFPHPKNQEKILAIFSLPYKNPPQNTKLTALYKNKKEEIFIKTLEGNYKSEKLS
                     VENKKVFPPKAVKERIAKEFKEANAIYSSYTPKALFDGSFNTPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAAVGTPIYAANSGVVKIAKDRYFAGKSVVIDHGFGIYSQYYHLS
                     KIEVKVGQKVKKGDFLGLSGATGRVSGPHLHFGILAGGKQVDPLDFISKFNTLFQ"
     gene            6711..7661
                     /locus_tag="ACJFEZ_000492"
     CDS             6711..7661
                     /locus_tag="ACJFEZ_000492"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HGG0916634.1"
                     /translation="MKFSEFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLDLIDKKVLKLPLELVEIGANEGYLSRDFLAALLEFRPEIFSKLSFFIIEPHEKLR
                     NLQKKTLEGVEFTHKRSLKECHFENAFFFCNELFDSFTCELIDDDKMAFIKDFKLVFE
                     PMEAKLKEKCEILNLKKGELSLELEEFFKDLDKASKKFIFASFDYGVFNPQQFSIRIY
                     QKHEVFNPFEITLKDFFGKSDLTYNVNFNQIQQLIKEHDFKLLALKKQNQALIDFGFE
                     ELLKYIKDKNLKTYENFLSQSKILFFNFDEKFHFFEFAKF"
     gene            complement(7761..8216)
                     /locus_tag="ACJFEZ_000493"
     CDS             complement(7761..8216)
                     /locus_tag="ACJFEZ_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine synthase"
                     /protein_id="HGG0916635.1"
                     /translation="MGSEIKVGNETHFVNFSYLKKKFPQILSNGCKYYRNDYNYKIGE
                     SNFNFKDKPEFAYYEDQFKAYMGEENYKKLRPYLGMTTYYVCEGKKYPVVFSTMIDYK
                     VKNYGLFGDEGRGFSFSSISRKSAGGGSFHYFTNGKFIKSDEKYTGQSY"
     gene            complement(8405..9382)
                     /locus_tag="ACJFEZ_000494"
     CDS             complement(8405..9382)
                     /locus_tag="ACJFEZ_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HGG0916636.1"
                     /translation="MLGIDLGSNTLRAVFINEKFEKLDEYEFIIGSAKNLDKTGKISD
                     EAIEKLRNALQEIAKKYDLSQARAVATAAFRKASNTNEIFTRLKQEFQIDFKVIDAKI
                     EAKISVLGMKRGLLNLGLNLDCGYCDLGGASCEFSFRDNFQSFDFGIISFYEKCKIKK
                     IANSFSFKKILQKYPNFPYRFKDKKLKIHFLIHDNFLKTMAFEAFGQSNGLKKALKQS
                     KMKNIVLNSGVPTALAALKKGLNYEKYEAKKINGARLNINDFLTFGQKLWYMDEKKAS
                     FWVGNTRKNYLVAGCFLLFSIFEREKLIVIDEGLREGLCMADLNLKDYQ"
     gene            9438..10205
                     /locus_tag="ACJFEZ_000495"
     CDS             9438..10205
                     /locus_tag="ACJFEZ_000495"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004290443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HGG0916637.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIAAKFGDQITLHVRE
                     DRRHAQDFDLENIIRFCKSPINLECALNDEILNLALKLKPHRITLVPEKREELTTEGG
                     LNLNHNKIKESIEKLQNAQIEVSLFINPSLEDIQKSYELKADFIELHTGHYANLHNAL
                     FSNISHTAFALKEFDLSKKTLQSKFEEELNNIEICAKKGVELGLKVAAGHGLNYKNVS
                     QIANIKKICELNIGQSIVARSVFVGLQNAILEMKALL"
     gene            10208..11308
                     /gene="pdxA"
                     /locus_tag="ACJFEZ_000496"
     CDS             10208..11308
                     /gene="pdxA"
                     /locus_tag="ACJFEZ_000496"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HGG0916638.1"
                     /translation="MKKLAISIGDINGIGLEILARSHEKLSQICTPYYFIHESLLQKA
                     LKLLNLELLNAKIVAFKDAKNYEFTLLKKHNSLEIYSFGLPLNLKVDENFDIKAGEID
                     AKSGLYSFLSFKAASYFVYKNHAHALLTLPIHKKAWEDAGLKFKGHTDALRFFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFQNLSIFLKDFYQETRFKKIGLLGFNPHAG
                     DYGVIGGKEEELMQKAIAFVNAFLNSKKDEKFFKKALKDEKLQKELLLNFNTKGVYLP
                     YPLVADTAFTKSNLKACNRLIAMYHDLGLAPLKALYFEKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKISTKSYFEAAKFALELPSKASI"
     gene            complement(11292..11897)
                     /locus_tag="ACJFEZ_000497"
     CDS             complement(11292..11897)
                     /locus_tag="ACJFEZ_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916639.1"
                     /translation="MKIILLTILSFLSLWGLSFDELIYKNEVRASFDCSKVKNNGKND
                     DELIICNKIGAINEFENKKLALMDNIFISLYQELLKNANEIIKEDFKLVVKKMFRERK
                     NCAKVISNDLLQADQDPQSPFVYKTDCIEKTYAKVFLELMQKAKKDTQSKERLKQIFN
                     NQVDRYENLIQMSIQDPIDLEIFIDNLAQEGLIDDNARLKL"
     gene            12140..12451
                     /locus_tag="ACJFEZ_000498"
     CDS             12140..12451
                     /locus_tag="ACJFEZ_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916640.1"
                     /translation="MVVKDIQTTSSSMFSATTKVKEKSTSADEFQATLNEVKNKEEKE
                     DKKTSSSEFTNEDLDLSAVKEDFKSYAWQKMREDQYKKNEEDLLNKLFATIDAGNTAK
                     I"
     gene            12599..13621
                     /gene="hemE"
                     /locus_tag="ACJFEZ_000499"
     CDS             12599..13621
                     /gene="hemE"
                     /locus_tag="ACJFEZ_000499"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HGG0916641.1"
                     /translation="MIFIDACFKKPTPYTPVWMMRQAGRYLPEYMKVRQEAGDFLSLC
                     KDYKRASEVSLQPVDILGVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFQTPISTLED
                     LNKLDDKNAYKKLNYVYDALKLTREKLPLDKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHEILNKLTQVLKSYLEEQIKAGANAVQIFDSWASALECDKFFDFSF
                     KYMLEISDFIKNKYPHIPVILFPKGISGYLDKIDGNFDVFGVDWSTPLDLARDKLSHQ
                     YTLQGNMEPCRLYDKKAIKQGVENILEIMQNKAHIFNLGHGILPDIPVENAKYFIQLV
                     QESSAK"
     gene            13618..14520
                     /locus_tag="ACJFEZ_000500"
     CDS             13618..14520
                     /locus_tag="ACJFEZ_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HGG0916642.1"
                     /translation="MKILFGPINSRRFGRSLGIDLSPSKKQCNFDCVYCELEAQKPQE
                     KQDEIVSVEEIILEVQGALEKNVPFDFLTLTANGEPSLYPHLDELISSLRKIAKDKKL
                     LILSNGTVVLDQDKFNTLLKLDVVKFSLDSAISKTFYRIDRALKNINLEKMIEKMAEF
                     KTQFKGDLVMEILVVKDLNDNEEEFIALNQALAKIAPLRVDLSTIDRPPAYAVKKISE
                     ERLLELSKLITSTPVLLPKRHYEGEKLNFNEEELLKMLHLRSQSEIDIENKLDKTSQL
                     LLDKLIKEEKIKILNLAGVKFYKA"
     gene            complement(14517..15710)
                     /locus_tag="ACJFEZ_000501"
     CDS             complement(14517..15710)
                     /locus_tag="ACJFEZ_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916643.1"
                     /translation="MLLVWIIFIFNIILAFLSIDFTRIHESLEQIKLTFFASIFILSL
                     TLIFFLFRKKRALARKDQKILLIKNEFIHAEEIDIETSLDLIREKIAHLNQDLFKISH
                     EKETYAKLLEDSLYQIGNIEGVVRCLDEEEASKEIKSLVLNALKHQKEQIRLGLNQAL
                     EYHKSIGVAQGNVLQFEASAAIVSDDGLEAFLLANLLSYFGIENTIFKSLSFDINDFH
                     VVFIKDKILEQSSKKADDFIVFGRSKNLYYEYFLSLPFEKKELENILQRKLDKICALK
                     FQTPYQNNVLLFKQNEFDATLFFNIIEKQCSQNMRVNSFSELKKELKKEAYRLILLDY
                     ELIKFDLEQMRSILSAYKKQHPQSHIIFFSRERVRDFDCVSEVLNDISRNDLIALIRK
                     YLPKN"
     gene            complement(15712..17526)
                     /gene="uvrC"
                     /locus_tag="ACJFEZ_000502"
     CDS             complement(15712..17526)
                     /gene="uvrC"
                     /locus_tag="ACJFEZ_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HGG0916644.1"
                     /translation="MAEILLKNTLKEELQTLPANAGVYQYFNAEGKLLYVGKAKNLKN
                     RVRSYFAFTPNLRANPKNSLRIQKMIEEAVHLEFITTNSEADALILENSFIKQLHPKY
                     NILLRDDKTYPYIYVDFNEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYP
                     LKQKASCKSPCIFYQISRCLAPCDKKITQEEYRLILDKAINALLSPSILVKNLEKQMF
                     HLAQNENYEEAAKIRDQIATIRDLEIKVEIDIAKLEDFEIFALACESSMLSTLRFVVQ
                     NGKIISANSKITPLKNNTDFDKNEIYKQLILENFSVDIPLVANTVYVYEDFEDRELLE
                     EILSQRFDKKISIKVPKIGEKRRICDLAFQNACLNIQKEQKNSDFNIQKELKNYFELE
                     NLPNCIEVFDNSHLQGVANVGAMITYKMGTWDKSNYRKFHLKYKNDYEQMREVLTRRA
                     LEFDKMPAPDLWLIDGGKALLDLAKEIILSSGANVDILAISKEKIDAKAHRAKGGAKD
                     KIHSLKGEFALSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLSSSKLVKSGLSAG
                     VIQKLLAYYGSFEAIYEANFEELCQLVGKKSAQKIKED"
     gene            complement(17519..17995)
                     /locus_tag="ACJFEZ_000503"
     CDS             complement(17519..17995)
                     /locus_tag="ACJFEZ_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916645.1"
                     /translation="MEKFQSPKIIKNTSAILNDLMSKSHYRPLKTLFFCKDFLNSFPP
                     AKQRLIARIYIKNHILNIVTLNSAAYQELNHDNSKIYIKVLIKKYGKMYPLSGFSDIK
                     DLKIFTQKYNNTIKNNENFTAKKPYIELSLGKFENKFENKILAKKFEEIRQMIRNG"
     gene            18132..19667
                     /gene="guaA"
                     /locus_tag="ACJFEZ_000504"
     CDS             18132..19667
                     /gene="guaA"
                     /locus_tag="ACJFEZ_000504"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HGG0916646.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKEVFNLGLPILGICYGMQLMAHHYKANVAPAGHK
                     EYGKASIEIQKDSDLFKNLPKKQIVWMSHSDKVENLPQGFEVLATSENSPYCVFANEE
                     KKFFALQFHPEVQHSEFGKSILKNFAKYACNCESIWNMGSFAKTQAEKIREEVGKDKV
                     LCAVSGGVDSSVVAALLANAIKDQVIVVFVDNGLLRSDEKEQVEFMFKNTLGINLISI
                     DASKIFLDRLAGVTDPEQKRKIIGNTFIEIFEEEAKKHKDVKFLAQGTLYTDIIESSV
                     IGASKTIKSHHNVGGLPEKMNLKLVEPLKEIFKDEVRALGIELGLSKEIVYRHPFPGP
                     GLAIRIMGEVNRPSLELLRKADVILLEELRSTGWYNKTWQAFCVLLNVKSVGVMGDNR
                     TYDNTICVRVVDASDGMTATFSHIPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
BASE COUNT         7084 a         3058 c         3046 g         6575 t
ORIGIN      
        1 acttggagta tctaaaaatg ctagcgcaga tgaaataaaa aaagcctatc gtcgtttagc
       61 aagacaatat catcctgata tcaataaaga aaaaggcgct gaagaaaaat ttaaagaaat
      121 caatgccgct tatgaaattt taagtgatga aaaaaaacgc gcacaatacg atcaatacgg
      181 agactccatg tttggaggac aaagttttca cgatttctca aaaaatacag gtggggtcaa
      241 tttagatgat atcttaaaag atctctttgg tggaggcttt ggtggaggct cttctagagg
      301 aagtcgtttt aatggttttt catcaaaagg ctttaacacc ggctttggag gttttggcgg
      361 atttgaagaa gaggatttgg attctactat agaacttagc attccttttg aaaaagcagt
      421 ggtaggtgga gaatatagct ttaatcttca aggagaaacg atcaaattta agattccaca
      481 tgggatcaaa caaggagaaa aacttagaat tcgtaacaag ggtaaaaatg gccgcaatgg
      541 aacacgcggg gatttgattg ttaaagttaa attaggagaa agtgaaatat atcaaagaga
      601 agatgatgat ttatatcaaa aagttgatat ctctttaaaa actgccctat ttggtggaaa
      661 agtcaccgtt aatactctta aggaaaacaa aaaagaagcc accataacca tacctgcaaa
      721 ttctaaaaac ggacaaaaaa ttcgccttaa aggctatggg gtgcaaaatc gcaaaagtga
      781 catctatgga gatatgtatt tggtattaaa tgttgtttta ccaaacactg aaaccttaga
      841 tgagaaatta atcgaaatgc taaaagaaaa actatcataa aaaaaggagt aaagtcatgg
      901 aacaccatta taatgaaccc gtatatttaa taagtgtcgt agcaaaagta ttaagcatac
      961 atccacaaac cctaagacaa tatgaaagag aaggtttgat agaacctagt agaactgatg
     1021 gaaaaataag gctctattct caaagggata tcgatcgtat caagcttatc ttgcgtttaa
     1081 cgcgcgatat gggggtaaat ttggcaggag tagatgtgat tttaaagctt aaaaatcaac
     1141 ttcatgaatt tgaaaattta atcgatgagc tacgcttaga gcttagcaaa caacaaaatc
     1201 caaatgcaag ctcaaaagca gttgtaaaac ataaaaatag ttttgattta attttttatg
     1261 aaaaaaaata gatggataat tttttagaaa tttttttaat tacagctgct ctagctatcg
     1321 ttcttaatgt tattttcaag aaatttgaaa ttcctactat tatcggttac attgctgcag
     1381 gagagattat ttctaaaatt tatcatctaa gtggcaaggg tgagattaca catattgctg
     1441 aatttggtat agtattttta atgtttacta tagggcttga attttctttt aagcatttaa
     1501 tagccatgaa acaagaggta tttttaaatg gctctttaca aatgcttact tgcggctttg
     1561 tttttatgtt gctagctata ggaattttag gacttggtga taaaagcgca accatagtag
     1621 gttttgctct agctctttct tcaaccgcag tggtgcttaa aattttaaat gataatggcg
     1681 atattaatga gcaatacgga agaaaagcct tagggatttt actttttcaa gacatagctg
     1741 tgattccttt gttattgctt gtggatattt tctcttcaaa taatcaaaac ataggacaat
     1801 tactccttac aactcttctt tcagcagtta tcttaatcgc tttacttttc tttataggta
     1861 aatacttagt cgataggata tttagactga ttatacgcgc ttcctcgcaa gaaattttta
     1921 tcagtactat actctttatg gtgattgggg caagcttttt ggcaaattat tttggttttt
     1981 cttattcttt aggagctttt atcgcaggag ccttgatagc agaaactaaa tataaacata
     2041 aaatcgaagc agacttaatc ccttttagag atttactctt aggcttattt tttataaccg
     2101 taggaatgca aattcagctt catatcgtag cacaaaattg gtttattatc tgtgtcttaa
     2161 ccttacttat aatgggttta aaatttggca tagtatgtgg ttttttattt ttatatacca
     2221 aaaaaagagt ggctttaaaa actgcttttt ctatcgctca agttggagaa tttgctttgg
     2281 caatcttctc gctcttgcaa gcaaaaagta tgctagatgt tgaaactgct caaattttga
     2341 ttgttgtttc tattgtaact atgattatca ccccttttgt attgaacaat ataagaaaaa
     2401 tagccaatgt agtagaagat atgactttaa acactaatgt tgttcagcaa agcactcaca
     2461 gcaccctaaa aaatcatctt gtaatctttg gatacggacg cttaggacaa gagatagtgc
     2521 aaaaaatcaa aaatactggt gttccttatt tggttttaga aagtgattta aatttggtag
     2581 aacttggcat aagtcggggt gaaaatgtcg tttttgccaa tgctgcccaa gaagaaacac
     2641 tcaagatagc caatataaca gaatgcgcag tagcaatcgt aaccataacc aacgaagcca
     2701 aactcgaaat gatttgtcag gttttagctt cttatccaaa gcctattgat acaattatcc
     2761 atgttaatgg tagtcttgaa aagatacttt tttcaagtat cgatgaaaac atacgcattg
     2821 taagatctga aaaagtcatc gcaagaaatt tagtccaaga ggctctagaa tgcagaattc
     2881 acaaaaatac ttaaaggatg gtattggcaa aaatagatga aaaaactcta agggttaaat
     2941 atttaagagc cttggaaaaa tttgcaaatg cagctatttc ggctttaaaa aaagaaaatt
     3001 ttgataaaga gaaatttcaa gaaagaatgg aaaaaaataa aaaaatagtt gaaaaatgcg
     3061 aggcggtaaa tttaaattca agctataata aaagcttaga aaattttgta aatcattgcc
     3121 ttgatttttc aaaacaaaaa gaagaacttc taagccttgc aaatgcttta gataaactta
     3181 aaaaaggtga aaagaaagaa aaacataaaa cttatttgaa ggattattat gattaatgta
     3241 ttttttgata tggatggcac cttaatcgac agtgcaaatg ctatatcttg tgctgtcaat
     3301 gagataagaa atgaactaaa tttaagccca ctttctaggg agaaaatcat gcaaaccatc
     3361 aatactccaa atgtagactg ggcaaaagag ctttatagta tagataattt ccatcattct
     3421 agctttaaag atggttttga aaaatatttc atcaaacact atgagcaaag cgtggtttta
     3481 tttgaagggg ttaaagaaat attggaattt ttaaaagagc aaaattgttt tttagctatc
     3541 gccactaatg cgcctcaaag ctcgctttct agcatactta aaaaacatga aatcattcct
     3601 tattttgata aaattttagg tgtaagtctt ggtatagaac ccaaacccca tcctatgatg
     3661 ctagatcttt taaagtctga agcgccccac aaaataagtg tttttatagg tgatagtcaa
     3721 aaagatagag aatgtgcgaa aaatgctaat gtgccttatt ttcatgcgaa atggtatcaa
     3781 aaggatttac aagaaaatga atttagcaat gcaaacgaac ttaaaaactt tttagagaag
     3841 tatttataag ttttttaatg aaaattgagt taaaataaaa taaattttta aaagagtaca
     3901 tatgagtgaa ttattaatag aaatcggaac agaagaacta cccgctattc ctttactaaa
     3961 agaattagcc aatatagaaa aaaaatggaa agatgtttta gaagattatc gcttggtgag
     4021 tgattttaaa ttttactaca ctccgcgtcg cttggtgatt tttcataaaa atttcgcaag
     4081 caaacaagaa gatagctttg ctgaatttat aggtgcacct aaaaatgtcg cttataagga
     4141 tggtcaatta tcagccgcag gacaaagctt tttacaaaaa gcaggcatta gcgaaaatga
     4201 gctttctttt aaagagatca aaggtaaaga agtcttgtat catcaaaaag ccattaaagg
     4261 tttgcaaagc caagaagttt taggagagat gattcatcaa tttttaaaaa gtcttaactt
     4321 tggtaaaagc atgcgttggg gtgcgaattc ttttgaattt atccgtgcaa tccgctctat
     4381 agtttgcatc ctagatgata atttagtcga atttgaaagc tatggtgtta agagtgctaa
     4441 aaaaactttt atacacagaa gtgtaagcta tgacttgcaa gaatttaata acgcaaaaga
     4501 atattttagc cttttagaaa aaaattacat tatcttagat ccactccaaa gaaaagagag
     4561 aatactcaag caatttaaac tcctagaaag ccaaaacaat atccaaatag gcgaagatga
     4621 ggagcttttg gctgaagtta ttgctatcac agaataccct aatgcacttt taggaagttt
     4681 tgaagaagaa tatcttcaaa ttcctagcga agttatcatt acttccatga gagaaaatca
     4741 acgctatttt gcagtcttta atgaaaaagg tttaagtaat cattttatcg ttgtaagcaa
     4801 tgcagtgtgc gaggattact caaaaatcat tcacggtaat gaaagagttt tgcgcgcaag
     4861 acttagtgat gcaatgtttt tctatcaaaa cgatttgcaa agtggcttaa atcctgaaaa
     4921 actcgctaaa atgacttatc ttgaaggctt aggaacaatg caagataaaa gtctaagaga
     4981 gataaaaatc gctgaagttt tatgtcaaat gctaaacaat gataaaatcg caaatataag
     5041 cactgcgatc aaatacgcaa aagctgactt agcaacgcaa atggtttatg aatttacaga
     5101 tttgcaaggc attatgggaa gctattatgc acaaaaaatg ggtctagatt atgaaatttg
     5161 tcttgctata aaggagcaat acctaccaaa ttccgaacaa gctccacttc ctagcactga
     5221 attttcaagc atagttgccc ttgcaaacaa gcttgatact ctcataggac tttttagcat
     5281 aggtaaaatt ccaagcggta caaaagatcc ttacgcctta aggcgtgctg ctaatgggat
     5341 aatcaaaatt gccctaaatt taaacaaaga atttgacatt caagcactac tagaaaaact
     5401 agcaagccat tataaaaact ttgatatgca aattttaaaa gattttattt ttgaaagact
     5461 ttataccttt tatagcgtta atgcttcttt tatcaaagcg gttttaagct ctaaaagcac
     5521 agatcttatc cacatcaatc aaagcgtaaa agcccttata gaattaagca aaaaagctaa
     5581 ttttcaagaa aatttcacta cctttaaaag actggccaat atcgctaata aaacttcgca
     5641 caaagtcgat gaaaaccttt ttgttgaaga agcagaaaat aaactttata aagcctttaa
     5701 ggaaaaaatt caagcacact ctttacaaga aaaacttgaa aatctcttct cacttaaacc
     5761 ttttatagac gaattttttg ataaagtaat gatcaatgcc aaagatgaaa aacttaaaaa
     5821 taatcgccaa gcacttatct atgaaattta cgaagaattt ctaaaaattg ccgatcttaa
     5881 agagctaagc ctatgaaagc tttttttctt tttttaagtc ttgctctttg gctctttgga
     5941 gctcaaaatt tcgagcttat caaaggacaa gctttatttt tggaactgga taaaaaagat
     6001 tttatttctt tgaaaaacga agataaaatt ttagctacct ttcctcatcc taaaaatcaa
     6061 gagaaaattt tagctatatt ttcactgcct tataaaaatc ctcctcaaaa tactaagctt
     6121 accgctcttt ataaaaacaa aaaagaagaa atttttataa aaactttgga aggcaattac
     6181 aaaagtgaaa aattaagcgt agagaataaa aaagtttttc cacctaaagc tgttaaagaa
     6241 cgcattgcta aagaatttaa agaagctaat gcaatttata gttcttatac tccaaaagct
     6301 ttatttgatg gctcttttaa tacgccttta aattctttta ttacgagtga ttttggcaaa
     6361 gcaagaacct ttaatgaaaa agttgcaagc tatcatagcg gaacagactt tagagccgct
     6421 gtaggaaccc ccatctatgc ggctaattca ggtgtagtaa aaatagcaaa agatcgctat
     6481 tttgcaggaa aatcagtagt cattgatcat ggttttggca tttactcgca gtattatcat
     6541 ctttctaaaa tcgaagttaa ggtaggacaa aaggttaaaa aaggtgattt tttggggcta
     6601 agtggagcta caggaagggt tagtggacca cacttacatt ttggtatttt agctggaggt
     6661 aaacaagtag atcctttgga ttttatctct aaatttaata cactttttca atgaaattta
     6721 gcgaattttt tcacgcttgg ctgcatgaaa gttattataa aaacgctgtt agtataggca
     6781 aaaatggaga tttttttacc gcagtaagcg tgggaaatct ttttggcact cttttagcaa
     6841 agcatttttt agatcttata gataaaaaag tcttaaaact tcccttagaa cttgtagaaa
     6901 taggagccaa tgagggctat ttgagtagag attttttagc cgctttgctt gaatttaggc
     6961 ctgaaatttt ttccaagctt tcttttttta tcatagagcc tcatgaaaaa ttaagaaatt
     7021 tgcaaaaaaa gaccttagaa ggcgtggaat ttacacataa gagaagctta aaagaatgtc
     7081 attttgaaaa tgcctttttc ttttgcaatg agctttttga tagttttact tgtgaattga
     7141 tagatgatga taaaatggcc tttattaaag attttaaact tgtttttgag cctatggagg
     7201 ctaaattaaa agaaaaatgc gaaattttaa atttaaaaaa aggcgaatta agcctagaat
     7261 tggaagaatt ttttaaagat ttggataaag cttctaaaaa atttatcttt gcaagttttg
     7321 attatggcgt gtttaatccc caacaattta gcattagaat ttatcaaaaa catgaagttt
     7381 ttaatccttt tgaaatcact ttaaaagatt tttttggtaa aagcgattta acctacaatg
     7441 tcaattttaa tcaaattcaa cagcttataa aagaacatga ttttaaactc ttagctctaa
     7501 aaaaacaaaa ccaagccttg attgattttg gttttgaaga attattaaaa tacatcaaag
     7561 ataaaaatct taagacttat gaaaattttc tttcacaaag taaaatttta ttttttaatt
     7621 ttgatgaaaa atttcacttc tttgaatttg ctaaattcta gcatgattgt tttctttatt
     7681 tttcaaatca agcattgcat aactagcatc tgctatatta gcatagtctt tgatttgaga
     7741 gataagttct ttaggattca tcagtaactt tgtcctgtat atttttcatc actttttata
     7801 aatttaccat tggtaaaata atgaaaagat cctccgcctg cacttttacg acttatgctt
     7861 gaaaagctaa atcctcttcc ttcatctcca aataaaccat agttttttac tttataatct
     7921 atcatggtag aaaaaacaac aggatatttt ttaccctcac acacataata agttgtcata
     7981 cctaaataag gtcttaattt tttatagttt tcttcaccca tatatgcttt aaattgatct
     8041 tcatagtatg caaattcggg tttatctttg aagttgaagt ttgattctcc tattttataa
     8101 ttataatcat tacgataata tttacaacca ttagaaagga tttgggggaa ttttttcttc
     8161 aaataagaaa aattcacaaa atgagtttca tttcctactt taatttcact acccaaatac
     8221 ttactacgaa attcttcttt tttttctaat tccaatatct cttctcttat ttttttatca
     8281 aagatataaa ttccaccata attacttgca agagttttta tttcacttgc tttttttctt
     8341 taaaagcaca tgcacttaaa aagattaggg taaataaagt aaaaaataat tgctatggta
     8401 attttcattg gtaatctttt aaatttaaat cagccataca aagcccctcc cttaaaccct
     8461 catcaatcac tataagtttt tctctttcaa aaatactaaa aagcaaaaaa catcccgcaa
     8521 ctaaataatt ttttcgcgta tttcctaccc aaaaacttgc ctttttttca tccatatacc
     8581 aaagtttttg cccaaaagtt aaaaaatcat tgatatttaa tcttgcacca ttgattttct
     8641 ttgcctcgta tttttcataa tttaagcctt tttttaaagc cgctaaagcc gtagggacac
     8701 ctgaatttaa aacgatattt ttcatcttgc tttgttttaa tgcttttttt aaaccattgc
     8761 tttgcccaaa ggcctcaaaa gccatggttt ttaaaaaatt atcgtgaatt aaaaaatgaa
     8821 tttttagctt tttatcttta aatctataag gaaaattagg atatttttga agtatttttt
     8881 taaaagaaaa agaatttgcg atttttttta tcttgcattt ttcataaaaa ctgataatac
     8941 caaaatcaaa actttgaaaa ttatccctaa aagaaaattc acaagatgcg ccccctaaat
     9001 cacaataccc acaatccaaa tttaagccta aatttaaaag cccccttttc atacccaaaa
     9061 cgctgatttt agcttcaatt ttggcatcta tcactttaaa atcaatttga aattcctgtt
     9121 ttaaacgagt aaaaatttca ttcgtattgc ttgcttttct aaaagctgca gttgcgactg
     9181 ctcttgcttg gcttaagtca tattttttag ctatttcttg aagtgcattg cgaagttttt
     9241 ctatggcttc atcacttatc tttccagttt tatctaagtt tttagccgaa cctatgataa
     9301 attcatattc atccaatttt tcaaattttt catttataaa aaccgctctt aaagtatttg
     9361 agccaagatc tatacctaac atcactatcc ttatttaaat ttatagtata atagcaaaaa
     9421 agttctaaag gaaaaatatg cttttaggtg taaatatcga ccacattgca gtattaagac
     9481 aagctagaat ggtaaatgat cctgatcttt tagaagccgc ttttatagct gctaaatttg
     9541 gagatcaaat cactttgcat gtaagagaag atcgtcgtca tgctcaagat tttgatttag
     9601 aaaatatcat acgcttttgc aaaagtccta tcaatttaga atgtgcttta aatgatgaaa
     9661 ttctaaactt agcacttaaa ttaaaacctc atcgtatcac cctagtgcct gaaaaaagag
     9721 aagagcttac cacagaaggg gggctaaatt taaatcataa taaaatcaaa gaaagtatag
     9781 aaaaacttca aaatgcgcaa atcgaggttt cactttttat caatcctagc ttagaagata
     9841 tacaaaaatc atatgaatta aaagctgatt ttatagaact tcacacagga cattatgcaa
     9901 atttgcataa cgcacttttt agcaatatct ctcatacagc ctttgcttta aaagaatttg
     9961 atttaagcaa aaaaacatta caaagtaaat ttgaagagga gttaaacaat atagaaattt
    10021 gtgctaaaaa aggagtggag cttggattaa aagtcgctgc tgggcatggg ctaaattata
    10081 aaaatgtaag ccaaatagca aatatcaaaa aaatttgcga acttaatatc ggccaaagta
    10141 ttgtagcaag atcggttttt gtaggactac aaaatgcgat tttagaaatg aaagcactgc
    10201 tttaaagatg aaaaaattag ccattagcat aggcgatatc aatggcatag ggcttgaaat
    10261 tctagcacgc tcacatgaaa aattaagcca aatttgcact ccttattatt ttatccatga
    10321 aagcttgctt caaaaagctt taaaactttt aaatttagag cttttaaatg caaaaatcgt
    10381 agcttttaaa gatgctaaaa attatgaatt tacactgctt aaaaagcata attctcttga
    10441 aatttattct tttggcttgc ctttaaattt aaaagtggat gaaaactttg acattaaagc
    10501 aggagaaata gatgcaaaaa gtggcctata tagcttctta agctttaagg cggcaagcta
    10561 ttttgtttat aaaaaccacg cacacgccct acttactcta cctatacata aaaaagcttg
    10621 ggaggatgcg gggcttaaat ttaaaggaca tactgatgca ctaagattct tttttaaaaa
    10681 aaatgccatc atgatgctag gatgtaagga actttttgta ggacttttta gcgagcacat
    10741 acccttagca aaagtaagca aaaaaatcac ttttcaaaat ttaagtattt ttttaaaaga
    10801 cttttatcaa gaaactcgct ttaaaaaaat cggactttta ggttttaacc cacatgcagg
    10861 agattatggg gtgataggag gcaaagaaga agagcttatg caaaaggcta tcgcttttgt
    10921 taatgctttt ttaaattcta aaaaagatga aaaattcttt aaaaaagctc taaaagatga
    10981 aaaattacaa aaagaattgc ttttaaattt taatacaaaa ggtgtttatt tgccctaccc
    11041 tttagtcgca gatacagctt ttacaaaatc aaatttaaaa gcatgcaatc gcttaatagc
    11101 catgtatcac gatcttggct tagcacccct aaaggctttg tattttgaaa aaagtatcaa
    11161 tgtgagttta aatttgccca ttatacgcgt aagtgttgat catggcaccg cctttgataa
    11221 ggcctataaa aatgccaaaa tcagtactaa aagctatttt gaagcagcta aatttgcttt
    11281 agaattgcct tctaaagctt caatctagca ttatcatcga tcaagccctc ttgggctaga
    11341 ttgtctataa aaatttccaa atctatagga tcttgaatgc tcatttggat taaattttca
    11401 tatctatcta cttgattatt aaaaatttgc tttaatcttt ctttgctttg agtatctttt
    11461 ttagcttttt gcataagctc taaaaatact ttagcataag ttttttctat acaatcagtc
    11521 ttgtaaacaa aaggcgattg aggatcttga tctgcttgca aaagatcgtt tgatataact
    11581 ttggcacaat tttttctttc tctaaacatt tttttcacaa ccaatttaaa atcttctttt
    11641 ataatttcat ttgcattttt taaaagctct tgatataaac ttataaagat attatccatc
    11701 aaagcaagtt ttttattttc aaattcatta atagcgccta ttttattgca tatgattaac
    11761 tcatcatcat ttttgccatt atttttaacc ttagaacaat caaaactcgc tctaacttca
    11821 tttttatata taagctcatc aaaactcaag ccccataagc taagaaaact taaaattgtt
    11881 agtaaaatta tcttcattgc ctctccttat tttttgtttt attgtaacaa aaatattttt
    11941 aattttttta aaaaaatcaa aatacaaatt tttaaccatc acaatacaga tttatttcaa
    12001 acaaattaac aaaactgtga aaactccttt tactttttga taaatgatca aaaattttct
    12061 aaaaaattat ccaaaatttc taaattggaa taaaaattgc ttatctaatt taaaatcaaa
    12121 aaaacaaaag gaggagaaaa tggtggtaaa agatatccaa acaacttcaa gctctatgtt
    12181 tagtgccaca accaaggtta aggaaaaaag cacttcagca gatgaatttc aagctactct
    12241 aaatgaagtt aaaaacaaag aagaaaaaga agacaaaaag acaagttcaa gtgaatttac
    12301 taatgaagat cttgatctta gtgctgttaa agaagatttt aaatcttatg cttggcaaaa
    12361 aatgagagaa gatcaataca aaaaaaatga agaagattta ctcaataaac tttttgcaac
    12421 cattgatgcg ggaaatactg ctaaaatata aatttaaaat ttcattgcga gaatttttca
    12481 attctcgtat aaatttataa aacaccaaaa taagacaatc acaaatcttt catacaacaa
    12541 aacacattta tttttattaa tttctgttat aattttatga aaaaaacaaa ggaaaattat
    12601 gatttttatc gacgcttgct ttaaaaaacc tacaccctat acacccgttt ggatgatgcg
    12661 tcaagcagga agatatttgc ctgaatatat gaaagttaga caagaagcgg gagatttttt
    12721 atccttatgt aaagactaca aaagagcttc ggaggtttct ttacaacctg ttgatatttt
    12781 aggagttgat gcggcgatta tcttttcaga cattttagta gtccctcttg aaatgggaat
    12841 gaatttacgc tttgaaaaag gcgaaggacc ggtatttcaa acacctattt caaccttaga
    12901 agaccttaac aagctagatg ataaaaatgc ttataaaaaa ctaaactatg tttatgatgc
    12961 tttaaaacta acacgcgaaa aattaccgct tgataaagct ttgataggat tttgtggcag
    13021 tccttggact atagcaactt atatgataga aggaagcgga agtaaaaatt atgcaaaatg
    13081 taaaaaaatg ctttatcaaa atccagaact tttgcatgaa attttaaata aactcactca
    13141 agttttaaaa tcttacttag aagaacaaat caaagcaggt gcaaatgcgg tgcaaatttt
    13201 tgatagctgg gcgagtgctt tagaatgtga taaattcttt gatttttcat ttaagtatat
    13261 gcttgaaatt tctgatttta ttaaaaacaa ataccctcac atacctgtaa ttttatttcc
    13321 taaaggcatt agtggctatt tggataaaat cgatggaaat tttgatgttt ttggagttga
    13381 ttggagtact cctcttgatt tagcacgcga taaattatcc caccaataca ccctacaagg
    13441 caatatggaa ccttgcagac tttatgataa aaaagctatc aaacaaggcg tagaaaatat
    13501 tcttgaaatt atgcaaaata aagctcatat tttcaatcta ggtcatggaa tcttgcctga
    13561 cattcctgtt gaaaatgcaa aatactttat ccagcttgtg caagaaagtt cagccaaatg
    13621 aaaattctct ttggccccat caattcaaga cgttttggaa gatctttagg tattgatcta
    13681 agccctagca agaaacaatg caattttgat tgcgtatatt gcgaacttga ggctcaaaaa
    13741 cctcaagaaa aacaagatga gattgtaagc gtagaagaaa tcattttaga agttcaaggc
    13801 gctcttgaaa aaaatgtccc atttgacttt cttaccttaa cagccaatgg ggaaccaagc
    13861 ctttatcctc atttagatga attgatctca tccttacgca agattgctaa agataaaaaa
    13921 ttgctcattt taagcaatgg caccgtggtt ttagatcaag acaaattcaa taccttatta
    13981 aagttagatg tggttaaatt tagcctagac agtgctattt ctaaaacctt ttaccgtatt
    14041 gatagggctt taaaaaatat taacttagaa aaaatgatag aaaaaatggc agaatttaaa
    14101 acccaattta aaggtgatct tgtaatggag atccttgtcg taaaagatct taatgacaat
    14161 gaagaagaat ttatcgcttt aaatcaagct ttagctaaaa tagcgccctt aagagttgat
    14221 ttaagcacca ttgatagacc cccagcttat gcggttaaaa aaataagcga agaaagactt
    14281 ttggaacttt ccaaactcat aacttccact cccgtgcttt tgcccaaaag acactatgag
    14341 ggtgaaaagt taaattttaa tgaagaagaa ttgctaaaaa tgcttcatct acgctcacaa
    14401 agtgagatag atatagaaaa taaattagat aaaacttctc aacttctttt agacaagctt
    14461 ataaaagaag aaaaaataaa gattcttaat ctagcaggag ttaaattcta taaagcctaa
    14521 tttttaggca aatattttct aatcaaagct ataagatcat ttctgctgat atcatttaaa
    14581 acctcgctta cgcaatcaaa atccctcacc ctctccctag aaaagaatat aatatgactt
    14641 tgagggtgtt gctttttata agcgctaaga atagaacgca tctgctcaag atcaaattta
    14701 atcaattcat aatcaagcaa tatcaaacga taagcttctt tttttaattc ttttttcaat
    14761 tcactaaaag aattcacgcg catattttgg gagcattgtt tttctatgat attaaaaaac
    14821 aaagttgcat caaactcatt ttgtttaaaa agcaaaacat tattttgata aggagtttga
    14881 aattttaaag cacaaatttt atcaagtttt ctttgcaaaa tattttcaag ctcttttttt
    14941 tcaaaaggta ggcttaaaaa atactcataa tataagtttt tactacgccc aaacacgata
    15001 aaatcatcag ctttcttaga actttgctct aaaattttat ccttaatgaa aaccacatga
    15061 aaatcattga tatcaaaact caaactctta aaaatagtat tttctatgcc aaaataagac
    15121 aacaaatttg ctagcaaaaa tgcttcaagc ccatcatcac ttactatcgc agcacttgct
    15181 tcaaattgca aaacattgcc ctgtgccacc cctatgcttt tatggtattc taaagcttga
    15241 ttaagtccaa gtctaatttg ttctttttga tgttttaatg catttaaaac aagtgatttg
    15301 atttccttgc ttgcttcttc ttcatctaaa catcttacaa cgccctcaat attgccaatt
    15361 tgatacaaac tatcctctag caattttgca taagtttctt tttcatgaga aatcttaaat
    15421 aaatcttgat ttaaatgtgc tattttttcc cgaatcaaat ccaaactcgt ttcgatatct
    15481 atctcttcag catgtataaa ttcattttta attaataaaa ttttttgatc tttcctagcc
    15541 aaagctcgtt tttttcgaaa aaggaaaaat attaaagtta aagacaaaat aaaaatacta
    15601 gcaaaaaaag taagtttaat ttgctcaagg ctttcatgaa ttcttgtaaa atctatactt
    15661 aaaaaagcca aaataatatt aaaaataaaa ataatccaaa ccaataacaa atcaatcttc
    15721 ctttattttt tgtgctgatt tttttcctac taattggcac aattcttcaa aatttgcctc
    15781 ataaatagct tcaaaacttc cataatacgc caaaagtttt tgtataactc ccgcactaag
    15841 tcctgatttt acaagcttag agcttgataa atcttgtttt ttcttagtgt tttgatgaaa
    15901 acttatggca aaacgatgtg cttcatctct taatttctgt aagaattgta attttttatc
    15961 gttaatgctt agggcaaatt ctccttttaa agagtgaatt ttatctttag cccctccttt
    16021 agcgcggtga gctttagcat cgattttttc ttttgagatt gctaaaatat caacatttgc
    16081 cccactactt aagatgattt ctttagctaa atcaagcaaa gcctttcctc catctataag
    16141 ccacaaatca ggagcaggca ttttgtcaaa ttctaatgct ctacgcgtta aaacttcacg
    16201 catttgctca taatcatttt tgtattttaa atgaaatttt ctataatttg acttatccca
    16261 agtacccatt ttataagtta tcatagctcc tacattcgcc acaccttgca aatgagaatt
    16321 atcaaaaact tctatacaat ttggcagatt ttcaagctcg aaataatttt taagttcttt
    16381 ttgtatatta aaatcactat ttttttgctc tttttgtata tttaaacacg cattttgaaa
    16441 tgccaaatca caaattcttc ttttttcccc tattttagga actttaatgc tgattttttt
    16501 atcaaatctc tggcttaaaa tttcttctaa aagctccctg tcttcaaaat cctcataaac
    16561 ataaacagta tttgcaacca aaggaatgtc tacgctaaaa ttttctaaaa taagctgttt
    16621 ataaatctca tttttatcaa aatctgtatt gtttttaagc ggagtgattt tagaattagc
    16681 gctgatgatt tttccatttt gcaccacaaa acgcaaagtt gaaagcatag agctttcaca
    16741 agctaaagca aaaatttcaa agtcttctaa tttagcgata tcaatctcaa ctttaatttc
    16801 caaatccctt atcgtagcaa tctgatctct tatttttgcc gcttcttcat aattctcatt
    16861 ttgggctaaa tgaaacattt gtttttccaa atttttcact aaaatactag ggcttaaaag
    16921 agcattgata gctttatcta aaatcaaacg atattcttct tgggtaattt ttttatcaca
    16981 aggcgcaaga caacgagaaa tttgataaaa aatacaagga gatttacaac ttgctttttg
    17041 ctttaaagga tagtataaat aaagcgcatc taaaagctct ctagctcctt taaaaaaggg
    17101 gccaaaatat ttgattttac tttttttaac taattttcta gtgatttcaa aacgcggaaa
    17161 ttcttcatta aaatctacat aaatataagg ataagtctta tcatctctta gtaaaatatt
    17221 gtattttgga tgaagttgct tgataaaaga attttccaaa atcaaagcat cagcttctga
    17281 atttgttgta ataaattcca aatgcaccgc ttcttctatc attttttgaa ttcttaaaga
    17341 attttttgga ttggcgcgta aatttggggt aaaagcaaaa taagatctta cgcggttttt
    17401 aagattttta gccttgccta catataaaag ctttccttcg gcattaaaat actgatacac
    17461 tccagcattt gcaggtaggg tttgaagctc ttctttgaga gtatttttaa gtaaaatttc
    17521 agccatttct tatcatctgc cttatttctt caaatttctt tgctaaaatt ttattttcaa
    17581 atttattttc aaattttcca aggcttaatt ctatataggg ttttttagcc gtgaaatttt
    17641 cattattttt tattgtatta ttgtattttt gtgtaaaaat ttttaaatct tttatatctg
    17701 aaaatccact caaaggatac atttttccgt atttttttat gagaacttta atataaattt
    17761 tgctattatc gtgatttaat tcttggtaag cggctgaatt taaagtcact atatttaaaa
    17821 tatgattttt tatataaatt ctagcgatta aacgctgttt ggcaggcgga aaagaattta
    17881 aaaaatcttt acaaaaaaat aaggttttta agggtcgata atgagactta ctcatcaagt
    17941 cattaagaat ggcgctagta tttttaatta tctttggact ttgaaatttt tccataagat
    18001 gattttagca ttttttttct taattttttt gtgtgcatgt ggctataagg gcaacccaca
    18061 atacactagc tacgaacaaa atggttcaat aaaaagtatt aaaaaatacg aacaattaaa
    18121 taggtggtag aatgaaaaaa gcagatattt tagttttaga ttttggatcg caatatactc
    18181 agcttatagc aagaagattg agagagcaag gcgtttatgc tgagattttg ccttttaatg
    18241 taagtttagc agatatcaaa gcgaaagaac ctaagggtat tattttaagt ggtggccctg
    18301 caagtgttta tgcaacagat gcgtactttt gtgataaaga ggtttttaat ctaggattac
    18361 ccatacttgg aatttgttat ggtatgcaac tcatggctca tcattataaa gccaatgttg
    18421 ctccagcagg acacaaagaa tacggcaaag caagtataga aattcaaaaa gatagcgatt
    18481 tgtttaaaaa tctacctaaa aaacaaatcg tttggatgag tcattctgat aaggttgaaa
    18541 atttaccaca aggttttgaa gttttagcaa caagtgaaaa tagtccgtat tgtgtttttg
    18601 caaatgaaga gaaaaaattc tttgccttgc aatttcaccc tgaagtacaa cacagtgaat
    18661 ttggcaaaag catcttgaaa aattttgcaa aatatgcttg caattgcgaa agtatttgga
    18721 atatgggatc ttttgcaaaa actcaagctg aaaaaattcg cgaagaagtg ggcaaagata
    18781 aagttctttg tgctgtaagc ggcggggtag atagcagtgt cgtagcagcc ttactagcaa
    18841 atgcaatcaa agatcaagtt atagtagttt ttgtagataa tggactttta agaagtgacg
    18901 aaaaagaaca agttgaattt atgtttaaaa acactttagg gattaatctt ataagcattg
    18961 atgcaagcaa gattttccta gatcgcttag caggagttac tgatcctgag caaaaacgca
    19021 aaatcatagg caataccttt atagaaattt ttgaagaaga agctaaaaaa cacaaagatg
    19081 tgaaattttt agctcaaggc acactttata ctgatatcat agaaagttcg gttataggtg
    19141 caagcaaaac tatcaaaagc caccacaatg taggtggatt gcctgaaaag atgaatctta
    19201 aacttgttga gccattaaaa gaaattttta aagacgaagt gcgtgcttta ggtatcgagc
    19261 ttggattaag caaagaaata gtttatcgcc atcctttccc aggccctggt cttgctatac
    19321 gcatcatggg agaagtcaat cgcccaagtc ttgaattact acgcaaagca gatgtaatct
    19381 tacttgaaga actaagaagc acaggttggt ataataaaac ttggcaagct ttttgtgtat
    19441 tgttaaatgt aaaaagcgtt ggtgttatgg gagataaccg aacttatgat aataccattt
    19501 gtgttcgtgt tgttgatgca agtgatggaa tgacagcgac tttttcacac ataccttatg
    19561 aaattttaga aaatatctcg cgtcgtatta tcaatgaggt tgaaggtatt aaccgcgtag
    19621 tttatgatat ctcaagtaaa ccacctgcaa ctatagaatg ggaataaatt aaaaaatctg
    19681 aaaacctgat aataatatac aggttttcaa gaatttaaaa ccctcattaa caaattttta
    19741 atacataaaa aactagcata taa
//
LOCUS       DBBXRO010000019        19598 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.019, whole genome shotgun sequence.
ACCESSION   DBBXRO010000019 DBBXRO010000000
VERSION     DBBXRO010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19598
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.019"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            74..361
                     /gene="gatC"
                     /locus_tag="ACJFEZ_000505"
     CDS             74..361
                     /gene="gatC"
                     /locus_tag="ACJFEZ_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HGG0916647.1"
                     /translation="MQIDEKLLSKLEKLSALQIEEEKRSEVICELSEIVNFVEKLNEL
                     DLSSSEVAISTIKGGAPFRSDSVNSSNVVETVLNHAPKSNDHFFIVPKIIE"
     gene            442..1002
                     /locus_tag="ACJFEZ_000506"
     CDS             442..1002
                     /locus_tag="ACJFEZ_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HGG0916648.1"
                     /translation="MEFYWFDAFILGFTLLLGLKGIVSGLIKEVFGLLGIIGGVFIAS
                     KYASQAAEFIQNTFYKIENQSLANFAGFLAILIIFWIICLVLGNFISKLVKLSGLGFL
                     DRLGGFIFGGAKVFLIFAILVFCVARIDFLNDKLNQFAQNSFTLTPLKNIGSFIMNQS
                     LTTSSLGQIDQNLQDIRDDLSTTQGE"
     gene            1006..1476
                     /locus_tag="ACJFEZ_000507"
     CDS             1006..1476
                     /locus_tag="ACJFEZ_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HGG0916649.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREILLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCNNCNQKAKVKI"
     gene            1476..2984
                     /gene="lysS"
                     /locus_tag="ACJFEZ_000508"
     CDS             1476..2984
                     /gene="lysS"
                     /locus_tag="ACJFEZ_000508"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HGG0916650.1"
                     /translation="MFDNILEQQRIQKANELKNAGVNPYPHFLVKELSLADFKKKFSY
                     IFDTENKRDESISSVISGRLKLLRIAGKSIFANIEDENENLQIYFSKDSLGEEKFNLF
                     KKNLEVGDIILAKGFPFVTKTGEFSLHASEITLATKSIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNAEVRKDFLTRSKVVSLIRHFFEEKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLEKLQLGKIIEFDGQKIDFSKPFERITYKDALKKYGALSDEII
                     ENKDKILEKLKKDGFEANDKLDLGHLQAELFDNYVESKLIDPTFITDFPISISPLSRR
                     SDKNSEIAERFELFVCGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEDKE"
     gene            2981..4225
                     /locus_tag="ACJFEZ_000509"
     CDS             2981..4225
                     /locus_tag="ACJFEZ_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HGG0916651.1"
                     /translation="MSLEQFDKEIFDLTNQELVRQCEGLEMIASENFTLPEVMEVMGS
                     VLTNKYAEGYPGKRYYGGCEFVDEIENLAIERCKKLFNCSFANVQPNSGSQANQGVYA
                     ALLNPGDKILGMDLSHGGHLTHGAKVNSSGKMYESFFYGVELDGRINYEKVREIAHIV
                     KPKLIVCGASAYARIIDFSKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSEE
                     WKIYAKQVRSNAQALAKVLMDRKYKLVSDGTDNHLVLMSFLEREFSGKDADLALGNAG
                     ITANKNTVPGETRSPFVTSGLRLGTPALTARGFKENEIQIVANYIADILDDIQNTHLQ
                     KEIKEKLKTLASNFIIYEKAMF"
     gene            4222..4767
                     /locus_tag="ACJFEZ_000510"
     CDS             4222..4767
                     /locus_tag="ACJFEZ_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HGG0916652.1"
                     /translation="MISPMDLSLIKIISDHYYIRRDKIMKKITHRGRLFFDKFERIDA
                     PLNLNIMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDIPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4780..5607
                     /locus_tag="ACJFEZ_000511"
     CDS             4780..5607
                     /locus_tag="ACJFEZ_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HGG0916653.1"
                     /translation="MENNKNEFDDIILEKSNKSEKMKKILLRVIALIILFLVIMIVMK
                     LINSGEENTENQSILPSEPLNITQDNNTDSFESMPITENTSAEDQFEALRRQIQGEQN
                     DNSLAPAPNANDNINLTMPDQEVPAEPNTTNSEKVAPLNTTPPKQEVKQESKPKEEAK
                     QTVVKKEPAKQTPKQEPKANANDLFKNVDAKPVHPNGLASGIYVQIFSVSNLDQKSRE
                     LAAVKQKGYEYKLYKTTVGGKEITKVLIGPFEKANVAAELAKIRKEVAKDAFSFTLK"
     gene            5604..6395
                     /locus_tag="ACJFEZ_000512"
     CDS             5604..6395
                     /locus_tag="ACJFEZ_000512"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HGG0916654.1"
                     /translation="MKFLAVIGDPISHSKSPRIHNNAIQVLKLDGIYTRYHLQDYHQL
                     RQDFFKLKLQGANITLPFKEAALEMADVKDELASNIGSANTLCLKDGKIYAYNTDALG
                     FLEAIKEFESINKALILGAGGTALALAFALKQKGVEVCVANRSEKRFKDFTLYKTSLY
                     NALDDFDFDLVVNSTSAGLKDDDLPCDKILLDKILSRAKFAFDVIYGKETSFLKLCKE
                     HNLKVKDGFDMLLWQAVFAFELFFDVKDKREKIKNAMQEALKLEF"
     gene            complement(6468..7373)
                     /locus_tag="ACJFEZ_000513"
     CDS             complement(6468..7373)
                     /locus_tag="ACJFEZ_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916655.1"
                     /translation="MKKYFLFIIALFLAACSGASNNFVHVSMPNFKPQTPTKVEPIDS
                     GVSIMLEPINIEQNNNYSDYFENSVLKIRIDKEVALLKENLEEQFKTIAQLKGYKIVT
                     SNPDYTLKSLINVLIEEKNIQKSNNFMSGESVKSNLGIKFQGKIDFIDQHNPQNSTNL
                     TSHTKLDSLVDLNYPIKTKDGINMFKTTISTVPTQLNKGLEKPAFEIDKSFLHFYKNT
                     LNTLYNNLPKATDIGKTVPNSNTDSSGFNHFDTNTIFEENLPQEQNLDNSSQDISFQE
                     QTSSNSNIQYENNTNKNQNGVIIFE"
     gene            7464..8279
                     /gene="lgt"
                     /locus_tag="ACJFEZ_000514"
     CDS             7464..8279
                     /gene="lgt"
                     /locus_tag="ACJFEZ_000514"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HGG0916656.1"
                     /translation="MEFWQNIYSNFDVVAFSVLGFKVHWYGIMYVLALLLALLLAKFF
                     VRKFKLDIDEKRLDSYFIWVEIGVILGARLGYILIYDAHTMYYITHPWQIFNPYANGE
                     FVGIRGMSYHGAIIGFLIATFLFCKKYKENPWKFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITDVSWGIYVEGVLRHPSQLYEAFLEGVVVFIVIYLVKMKQKFQGELILVYACV
                     YSLARFVCEFYREPDFGLGFIFWGMSMGQILSLLMFVAALLFYICIKFKKVNI"
     gene            8347..9132
                     /locus_tag="ACJFEZ_000515"
     CDS             8347..9132
                     /locus_tag="ACJFEZ_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HGG0916657.1"
                     /translation="MSELIEGYLGKSIDGKKSKMPAKLDFIQSASGLFLGLFMWVHMV
                     FVSTILVSKDFFNSVVHFLELKFIYNDPMMSYITSFLAACVLVVFFVHALLAMRKFPI
                     NFRQYQILRTHAKKMNHGDTSLWLVQAFTGFVMFFLGSAHLIFVITNGDKISADMSGD
                     RVINHFMWLFYIALLICVELHGSIGLYRLCVKWGWFEAKDVKDIRKSRKKLKMAKWII
                     SIFFLVLGVLSLAAFAKIGFENYQSQTTAMVKTYNGANYEYSI"
     gene            9116..11107
                     /locus_tag="ACJFEZ_000516"
     CDS             9116..11107
                     /locus_tag="ACJFEZ_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HGG0916658.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLGNGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAS
                     WGVPWTRVTKGPRTVVINAQKTVIEEREEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRVIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLDG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIIGDYFADYCKNNGEVIDTNIVKDFLT
                     KEYQYLKSLVDKEGKYSVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKESQN
                     VKVHCKELDCANPELEEAYRVPRMLKVALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTLTYWVEGESLPRVEYDELDIMKMEMPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKNRHEIQHALMPYELQPKYKALNQRIGVDYE"
     gene            11100..11825
                     /locus_tag="ACJFEZ_000517"
     CDS             11100..11825
                     /locus_tag="ACJFEZ_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HGG0916659.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKIEERIEPEVAEETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRTVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKNLPLQSKIAYMRRQLVAQRNK"
     gene            11853..14039
                     /locus_tag="ACJFEZ_000518"
     CDS             11853..14039
                     /locus_tag="ACJFEZ_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HGG0916660.1"
                     /translation="MKELLQKLWQNELQLLDFNASFKDKNILDISELAIILSVNKDNY
                     ERYFLLKEFSNICKKIDLRVDIFSIQKAQICVLNMFREGFIPKQDLLKALRILQKISN
                     NAEILEYIQNIQVQSIDKKALFQSGFNELNHINMELSKLSFDENSKIRLQKTLEKFQK
                     LEFNIAITGVMNSGKSSLLNALLKEDFLGVSNIPETANLTLLSYGNTQEAVIYFWDTQ
                     EWDNILKSSKFSKELKEFIDELALKIDIKEYVQDKALTQKINLKELKEFSSAKNQISA
                     LIKKIEIKSNLEFLKNNISIVDTPGLDDIVVQREILTNEYLKESDFLIHLMNASQALT
                     QKDAEFLIHCLLNSRLSKFLIVLTKADLLSQKDLDEVINYTKESLKARLENFDTHLIE
                     KIDFLCVSAKMASDFYKGLSSEESFKKSGMKEFEEYLFNELYSGEKSKIILQAYKKEL
                     LLELRNILNEYEMQNKLIKEDRQGLSEENDKLLLEFKAKEEALKEAKEEISNSILNLE
                     NFENGVDNLVLLLAKKLKERLIDEIKYLKDKAQKININRILNMIDITVKDGINDILRE
                     VKFENIKKIEELKTSLALKYDFLKDDFDNGFEGFKDEISKKIENIFSDEKFALLRLQI
                     EQIISTKVDLFELETKLTEVIFSTFESFNIGAILKDLDINGAFFAFLNERMKNYEVLQ
                     KEKLASIEHLINNLKNQNADILFSYEGNLEKIAKLQQLEVELMNAN"
     gene            14029..15861
                     /locus_tag="ACJFEZ_000519"
     CDS             14029..15861
                     /locus_tag="ACJFEZ_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HGG0916661.1"
                     /translation="MQINILNHFIKAYEDAYNIDFDKSFEGQIKMLCKKLNEPFMHPS
                     YNLIQELEELSFSLDKNINIAIIGQFSSGKSTLLNLILKKECLPTGVVPVTFKPTFLR
                     YADEYFLRVEFQDGSDEITHIEELAKYTDQRNNVKETKSLHIFAPIPLLKKITLVDTP
                     GLNANEDDTLTTLKELQNIHAAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAQELENVLNYAKTVFSKYFKELIAISCKEAKDETKYEESNFNLLLDFLDNLDEK
                     ALKQKFTKRKMLHLCQVLEDENRLFVDIFDKLANQFQIYQEKLNSSFDDFIKEVQILN
                     HQILNKLKSIGERIASEIFNCIKEKEAHFYKEAKGFLKKDLYVKYDYKAPFISSDDAF
                     LAMFYNSDIMNKEFKKIKNEIYESFEKIKQKLKDFIDNLEKDILLFKAEFSNIQKDNI
                     LQSDKNFSELRAFCNASDEYFLKDFKELLFKSLLELDLFFEKLNLKAFANYANATKLS
                     LAFFSRKINESRVLYELDSSEFTLFYPKKSEIYERVLTELNAYEFEALLINKPILVKI
                     SNHFLEQNTNIIQEKNKILDLKKVELQKRKEQILEVRSVLKENL"
     gene            15858..16563
                     /locus_tag="ACJFEZ_000520"
                     /pseudo
     CDS             15858..16563
                     /locus_tag="ACJFEZ_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806952.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
     gene            complement(16582..17271)
                     /locus_tag="ACJFEZ_000521"
     CDS             complement(16582..17271)
                     /locus_tag="ACJFEZ_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metalloprotease CJM1_0395 family
                     protein"
                     /protein_id="HGG0916662.1"
                     /translation="MQIGLNYNYASNSSYYDKTQKNNAEQENTENTNSQNKDSKQNNE
                     QTQMINGVELTIQQVQQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFSYTRGPDNQM
                     YATAGEVPIRMQKGRTPEETIANARQVVAAAMAPADPSPQDYKVAANALKMEFEARAE
                     ATKLKAQEAQEKKEENEENEEKQENLDINNQDSKDNFEETQANKDFKNFIGKIYQQNS
                     QNNPINFSLVS"
     gene            17381..17743
                     /locus_tag="ACJFEZ_000522"
     CDS             17381..17743
                     /locus_tag="ACJFEZ_000522"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HGG0916663.1"
                     /translation="MIYENDLIYIEKEEAQVPWIKIFTKQVYKEFSDCPYELQKEIFD
                     KILRCEKAMIEFYKPEKINIASFANYVPRVHFHIMARFKEDAFFPECMWGKQQRELKD
                     LNLPSFDEFVIFLKNKMD"
     gene            17818..18390
                     /locus_tag="ACJFEZ_000523"
     CDS             17818..18390
                     /locus_tag="ACJFEZ_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HGG0916664.1"
                     /translation="MKKILLSSLVAASLLSAGLFAKEYTLDKTHTDVGFKIKHLQISN
                     VKGNFQDYDAVIDFDPASFEFKKLEATIKVASVNTDNQTRDNHLQQNDFFKAKQFPNM
                     TFVMKKYEKIDNEKGKMTGTLTIAGVSKDVVLDTEIGGTAKGKDGKEKVGFSLNGKIK
                     RSDFNFAPGTSTITLSDDINLNIEVEANEK"
     gene            complement(18395..19351)
                     /locus_tag="ACJFEZ_000524"
     CDS             complement(18395..19351)
                     /locus_tag="ACJFEZ_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916665.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYASFFQANLFVALFLPMIFTLFCLGKHHVLILNKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(19412..19597)
                     /locus_tag="ACJFEZ_000525"
     CDS             complement(19412..19597)
                     /locus_tag="ACJFEZ_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HGG0916666.1"
                     /translation="MAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELLENSKKTHE
                     ELLHIEQTIQDEIAKFK"
BASE COUNT         6877 a         2424 c         3645 g         6652 t
ORIGIN      
        1 aaaatatcct aaacaattta aagcttttta tgatataatt ttaaaaattg actttatttt
       61 agtaaggttt aagatgcaaa tagatgaaaa attgcttagc aagcttgaaa aactaagtgc
      121 tttacaaatt gaagaagaaa aaagaagtga agtgatttgc gaacttagtg agattgtgaa
      181 ttttgttgag aagttaaatg aattagattt aagttcttca gaagttgcaa tcagcaccat
      241 taaaggtgga gcacctttta gaagtgatag tgttaatagt agcaatgtag tagaaacggt
      301 tttaaatcat gccccaaaaa gcaatgatca ttttttcatt gttcctaaaa tcattgagtg
      361 atcaatctag tgtttggttc ttgtttgtat aatttataat tttaagtgat ttttaaatgc
      421 tttggtaagg tgaattaaaa tatggaattt tactggtttg atgcttttat tttaggtttt
      481 actctacttt taggtcttaa gggtattgta agtggtttga ttaaagaagt atttggtttg
      541 ctcgggatta tcggtggtgt ttttattgct tcaaaatacg cttcgcaagc tgcagaattt
      601 attcaaaata ctttctataa gatagaaaat caaagtttgg ctaattttgc aggattttta
      661 gcaattttaa ttattttttg gataatttgt ctcgtgcttg gcaattttat ttctaaattg
      721 gttaaattaa gcggtttggg atttttagat cgtttgggag ggtttatttt tggaggtgca
      781 aaagtatttt taatttttgc aattttagtt ttttgtgtgg cgcgtattga ttttttaaat
      841 gataaattaa atcaatttgc ccaaaatagt tttactttaa ctcctcttaa aaatatagga
      901 tcatttataa tgaatcagtc tctaacaaca agtagtttgg gtcaaattga tcaaaatttg
      961 caagatatta gagatgattt aagtactact caaggagaat aaaatatgtt gattgagaat
     1021 gtagaatacg atgtattact agaaagattt aagaaaattt tacgacaagg tggtcttaaa
     1081 tataccaaac aaagagaaat cttactcaaa accttatatc atagtgatac acattatact
     1141 cctgaaagtt tatatatgga gattaaacaa gcagaaccgg atttgaatgt aggtattgct
     1201 acggtttata ggactttaaa tttgcttgaa gaagcagaaa tggttacttc tatatcattt
     1261 ggttcggctg gaaaaaaata cgagcttgcc aataaaccac accatgatca tatgatttgt
     1321 aaaaattgtg gaaaaattat agaatttgaa aatcctatca ttgaaagaca gcaagccttg
     1381 attgctaaag agcatggatt taaacttacg ggacatttaa tgcaacttta tggtgtgtgt
     1441 aataattgta atcaaaaagc taaggtaaaa atttaatgtt tgacaatatt ttagaacaac
     1501 aaagaattca aaaggctaat gagcttaaaa acgcaggagt aaatccttat ccacattttt
     1561 tagttaaaga actttctcta gcagatttta aaaagaaatt tagctatatt tttgatactg
     1621 aaaataaacg cgatgaaagt atctcttctg tcatttctgg acgcttaaag cttcttagaa
     1681 ttgctggtaa atctatattt gctaatatag aagatgagaa tgagaatttg caaatttatt
     1741 ttagtaaaga ttctttaggt gaggaaaaat ttaatttatt caaaaaaaat cttgaagtgg
     1801 gtgatatcat ccttgcaaaa ggcttccctt ttgttactaa aacgggagag tttagcttgc
     1861 acgcaagtga gatcacttta gcaactaaat caatagtacc tttgcctgaa aaataccatg
     1921 gacttacaga tatagaacaa agatatcgta agcgttatgt agatatgatt atgaatgcag
     1981 aggttagaaa agattttctg actcgttcta aagttgtaag tttgattcgt catttttttg
     2041 aagaaaaagg ctttttagag gttgaaactc ctatgatgca ccccattgca ggtggtgcaa
     2101 atgctaaacc ttttgtaact tttcataatt ctttaggggt tgagagattt ttaagaattg
     2161 cacctgagct ttatttaaaa agacttgtag tgggtggttt tgaggcagtt tttgaaatca
     2221 atcgttgttt tagaaatgaa ggaatggatc ttactcataa ccctgaattt actacaattg
     2281 agttttattg ggcttatcat aattataaag atttaatgga tcttactgaa gaactttttg
     2341 ccttactttt agaaaaattg caattaggaa aaatcataga atttgatgga caaaaaatcg
     2401 atttttccaa accttttgag agaattactt ataaagatgc gcttaaaaag tatggtgctt
     2461 taagcgatga aattattgaa aataaagata agattttaga gaaattaaaa aaagatggct
     2521 ttgaagcaaa tgataagctt gacttagggc atttgcaagc cgagcttttc gataattatg
     2581 tagaaagtaa acttattgat cctactttta tcacagattt tccaatatct attagcccac
     2641 tttctcgtcg tagtgacaaa aattctgaga tagcagagcg ctttgagctt tttgtgtgtg
     2701 gtagagaatt agccaatggt tttaacgaat taaatgatcc tttagatcaa tatgaaagat
     2761 ttttaaaaca aattgaggct aaaaatgcag gtgatgaaga agcgtgtgaa atggatgaag
     2821 attttgtaaa tgctctagga tatggtatgc caccaacagc aggacaaggt ataggaatag
     2881 atagattggt gatgctttta acaaataaaa aatctattcg agatgtgata ttgtttccag
     2941 ctatgaggcc attgaaatca gaattaaagg aggataaaga atgagtttag agcagtttga
     3001 taaggaaatt tttgatttaa ctaaccaaga gttagtgcgc cagtgcgaag gtcttgaaat
     3061 gatagcaagt gagaatttca ctttgcctga agtaatggaa gtaatgggaa gtgttttaac
     3121 taacaaatat gcagaaggtt atccaggtaa gagatattat ggaggctgtg aatttgtaga
     3181 tgaaatcgaa aatttagcta tagaaagatg taaaaaactt tttaattgta gttttgcaaa
     3241 tgtgcaacct aattcaggtt ctcaagctaa tcaaggcgtt tatgctgcac ttttaaatcc
     3301 aggtgataaa attttaggaa tggatttaag tcatggtgga catttaacac atggtgcaaa
     3361 agtaaactca tcgggaaaaa tgtatgagag ctttttttat ggtgtagagc ttgatggaag
     3421 gataaactat gaaaaagtta gggaaattgc tcatattgta aaaccaaagc ttatcgtgtg
     3481 cggtgcgagt gcttatgctc gtattattga cttttcaaaa tttagagaga ttgcggatga
     3541 agttggagct tatctttttg cagacattgc acacattgct ggacttgttg tagcaggtga
     3601 gcatccaagt ccatttcctc atgctcatgt agtaagctct acaacccaca aaaccttacg
     3661 tggtccaaga ggcggtatca tcatgactaa tgatgaagag cttgctaaaa aaattaattc
     3721 agctattttt ccaggtatcc aaggtggacc attgatgcat gttattgcag ctaaagccgt
     3781 gggatttaaa tttaatctta gtgaagaatg gaaaatttat gctaagcaag taagaagcaa
     3841 tgcgcaagct ttagctaaag ttttaatgga tagaaagtat aagcttgtaa gtgatggaac
     3901 agataatcat cttgtattga tgagcttttt agagcgtgaa tttagcggaa aagatgcgga
     3961 tttggctttg ggtaatgcag gaattacagc aaataaaaat accgtgcctg gcgaaactag
     4021 aagcccattt gtaacaagtg gattaagatt aggaacgcct gcccttacgg ctagaggttt
     4081 taaagaaaat gaaattcaaa tagttgctaa ctatatagct gatattttag atgatattca
     4141 aaatactcat ttgcaaaaag aaattaagga aaaactcaaa acccttgcaa gtaattttat
     4201 aatctatgaa aaggcaatgt tttgatttca cctatggatc tgtcgctgat taaaataatt
     4261 agcgaccatt attatatacg acgcgataag attatgaaaa aaataacaca tcgaggtcgt
     4321 ttattttttg ataaatttga aaggattgat gctcctttaa atttaaatat catgagagaa
     4381 catgcagcga agaaaatcgt tgttgctcat gatttgatca ccaaagacaa taaagtagaa
     4441 aatattgttt ttgattataa tggttttaat gctgaaagat tttatcatcg tgcgcagctt
     4501 attttgcgtg aagaaggttt tataaatttt acagcttaca aaacaaagac tccaggtcat
     4561 ttacatcttt atattcacaa aggtcacact gcgttaaacg aaggttattc tttagcgtct
     4621 aaactttcaa tgatgtttgc aagtaaaatg ccagttgaat ggaaggtgtt tccaagtatg
     4681 gatattccta gagagtttaa tatattaata ctaccctatg aagtctatca aaaagaacga
     4741 ggcagttctt ggtctaaaca tatgtaagaa aggaatatta tggaaaataa taaaaatgaa
     4801 tttgatgata ttattttgga aaaaagtaat aaaagtgaaa aaatgaaaaa aattctctta
     4861 cgcgtcattg ctttgataat tttatttcta gtgattatga tagttatgaa actcattaat
     4921 agtggtgaag aaaatactga aaatcaaagt attttaccaa gtgaaccctt aaatataacg
     4981 caagataata atactgattc ttttgagagt atgccaatta ctgaaaatac ttcagctgaa
     5041 gatcaatttg aagctttaag aagacagatt caaggggagc aaaatgataa ttctttagca
     5101 ccagctccta atgcaaatga taatatcaat ttaactatgc ctgatcaaga agtgcctgct
     5161 gagccaaata cgacaaattc tgaaaaagtg gcacctttaa atactacacc tcctaagcag
     5221 gaagtaaaac aagaaagtaa gccaaaagaa gaagcaaaac agactgtcgt aaaaaaagaa
     5281 cctgcaaaac aaacacctaa acaagagcca aaagccaatg ctaatgattt gtttaaaaat
     5341 gtagatgcta aacctgttca tccaaatggt ctagcttctg ggatttatgt tcagatattt
     5401 tcagtgagca atttagatca aaaatcaaga gagctagcag ctgtaaaaca aaaaggctat
     5461 gaatataagc tttataaaac tacagtaggt ggaaaagaaa tcactaaggt tttaatagga
     5521 ccttttgaga aagcaaatgt tgcagcagaa ttagctaaaa ttagaaaaga agtagctaaa
     5581 gacgcatttt ctttcacttt aaaatgaaat ttttagctgt gatcggcgat cccatttcgc
     5641 attctaagtc gcctagaatt cataacaatg ccattcaagt tctcaagctt gatggtattt
     5701 atacacgcta tcatctacaa gattatcatc aattaagaca ggattttttt aaattaaaac
     5761 ttcaaggagc aaatatcact ttgccattta aagaagcagc tttggaaatg gctgatgtta
     5821 aagatgagct tgctagtaat attggctctg caaatacctt atgtttaaaa gatggaaaaa
     5881 tttatgctta caatactgat gccttaggtt ttttagaagc tattaaagaa tttgaaagta
     5941 ttaataaagc tttgatttta ggagctggag ggactgcgct tgctctagca tttgctttaa
     6001 agcaaaaagg agtagaggtt tgtgtggcaa atcgtagcga aaaaagattt aaggatttta
     6061 ctttatataa aaccagtctt tataatgcct tggatgattt tgattttgat ttggtggtta
     6121 attcaacttc ggcaggctta aaagatgatg atctaccttg cgataaaata cttttagata
     6181 aaattttaag cagagcaaaa tttgcctttg atgtcattta tggcaaagaa acctcttttt
     6241 taaaattatg caaagagcat aacttaaaag taaaagatgg gtttgatatg cttttatggc
     6301 aagctgtttt tgcctttgag cttttttttg atgtcaaaga taaaagagaa aagattaaaa
     6361 atgccatgca agaagctctg aagttagagt tttgattttt ttgatttctc ttagaaaata
     6421 tcaaatataa taagagaaat caaagtatta tttactattt aggctaatca ttcaaaaatg
     6481 ataaccccat tttgattttt gtttgtgtta ttttcatatt gtatatttga atttgaagat
     6541 gtttgctctt gaaaagaaat atcttgcgag ctattatcca aattttgttc ttgaggtaaa
     6601 ttttcttcaa atattgtgtt ggtatcaaaa tgattaaagc cgctagaatc agtattgcta
     6661 tttggtacag tttttcctat atctgtggct tttggaagat tattatagag tgtatttaaa
     6721 gtatttttat aaaaatgtaa aaaactttta tctatttcaa aagctggctt ttctagacct
     6781 ttattgagtt gtgtgggtac tgttgaaata gtagttttaa acatatttat tccatctttg
     6841 gttttaatag ggtaatttaa atccaccaag gagtcaagtt tggtatggct tgttagattg
     6901 gtcgaatttt gagggttgtg ctgatcaata aaatcaattt ttccttgaaa tttaattcct
     6961 aaattagatt taacagactc tccactcata aaattatttg atttttgtat atttttttct
     7021 tctataagaa catttatcaa acttttaaga gtgtaatcag gatttgaagt tactatttta
     7081 tagcccttaa gctgtgctat ggttttaaat tgttcttcta aattttcttt taaaagagcc
     7141 acttccttgt caatgcgaat tttaagtaca gagttttcaa aataatctga ataattatta
     7201 ttttgttcta tatttatagg ttctagcatg attgaaaccc cagaatctat aggctctact
     7261 tttgtaggag tttgaggttt gaaattaggc attgaaacat gcacaaaatt attgctagca
     7321 ccactgcaag cagctaaaaa taaagcaata ataaataaga aatatttttt cattttttaa
     7381 cctttaagat aagaaattat gtttaattat agcaagttaa agtttttttg ctatattttt
     7441 acaaaataaa taatggaaaa agtatggaat tttggcaaaa tatttattca aattttgatg
     7501 ttgtggcttt tagtgtttta gggtttaaag tacattggta tggaattatg tatgttttag
     7561 ccttactttt agccttactt ttagcgaaat tttttgtaag aaaatttaag ctagatatcg
     7621 atgaaaaacg cttagatagt tattttattt gggtggaaat tggcgtgatt ttaggagcaa
     7681 gacttggata tattttaatt tatgatgcac acactatgta ttatattact catccttggc
     7741 aaattttcaa tccttatgca aatggtgaat ttgtaggcat tcgtggtatg agttatcatg
     7801 gtgcgattat aggatttttg atagctactt ttttattttg taaaaaatac aaagaaaatc
     7861 cttggaaatt tcttgatttg gtggctttga gtgtaccttt agcttatgtt tttggtcgta
     7921 taggaaattt tttaaaccaa gagctttttg gacgcattac cgatgtatct tggggtattt
     7981 atgtggaggg agttttaaga catccatcac aactttatga agccttttta gagggagttg
     8041 tggtttttat tgttatttat ctggtaaaaa tgaaacaaaa atttcaaggt gaacttattc
     8101 ttgtttatgc ttgtgtttat tctttggcgc gttttgtatg tgaattttat cgtgaaccag
     8161 attttggttt aggctttatt ttttggggta tgagcatggg acaaattttg agtttgctta
     8221 tgtttgtagc agccttgtta ttttatattt gcataaagtt taaaaaagta aatatttaat
     8281 gtgtattaaa ggctattgta ctataatgaa gagatttttt aaatttcttt ctataaagga
     8341 gtgaagatga gtgagcttat cgaagggtat ttgggtaaga gcattgatgg caaaaaaagt
     8401 aaaatgcctg caaagttaga ttttatccaa agtgcttctg ggctttttct aggtcttttc
     8461 atgtgggtac atatggtttt tgtatctact atcttggtga gtaaggattt ttttaattcc
     8521 gttgtccatt ttttggaatt aaaattcatt tataacgatc caatgatgag ttatattacc
     8581 tcgtttttag ctgcctgtgt tttggtggtg ttttttgtgc atgctttatt ggctatgaga
     8641 aaatttccta ttaattttcg ccaataccaa attcttagaa ctcatgctaa aaaaatgaat
     8701 catggtgata cttcattatg gcttgttcaa gcatttacag gttttgtaat gtttttctta
     8761 ggctctgcgc acttgatttt tgttatcaca aatggagata aaatttctgc tgatatgtca
     8821 ggtgataggg tgatcaatca ttttatgtgg cttttttata tcgcactttt aatctgtgtg
     8881 gaattgcatg gtagtatagg gctttataga ctttgtgtaa aatggggctg gtttgaagca
     8941 aaagatgtta aagatattcg caaaagtcgt aaaaaactca agatggcaaa atggataatc
     9001 agcattttct tcttggtttt aggagtttta agtcttgcag catttgcgaa aattggattt
     9061 gaaaactatc aaagtcaaac aactgcaatg gtaaaaactt ataatggagc aaattatgaa
     9121 tattcaatat agtgatgctt tagtaatagg cggaggtttg gcaggcctta gagctgcaat
     9181 agaggtggca aaaagtggtc aaagtgtaac acttttaagt atttgtccgg taaagcgttc
     9241 gcactctgct gcggtgcaag gaggtatgca agcttcttta ggaaatggtg ctaaaggtga
     9301 aggtgataac gaagatttac actttgcaga tacagtaaaa ggaagcgact ggggttgtga
     9361 tcaagaagta gcaagaatgt ttgcacaaac tgctccaaaa gccgttcgcg aacttgcttc
     9421 ttggggggtt ccttggacta gggtaactaa aggaccaaga acagttgtta ttaacgcaca
     9481 aaaaactgta atcgaagaaa gagaagaggc tcatggactc atcaatgctc gtgactttgg
     9541 tggaactaaa aaatggagaa cttgttatat agctgatgct acaggccact gtatgcttta
     9601 tggcgtagct aatgaagcta tcaaacatca ggtaaaaatt atcgatagaa tggaagcggt
     9661 tagagttatc catgatggca aaaaatgctt aggtgtaatt gcaagggatt taactaatgg
     9721 gcaactgatt gcttatattg caagaggaac aatgatagca acgggtggtt atggtagaat
     9781 ttataagcaa accacaaatg cggttatctg cgaaggaaca ggtgcagcta tagctcttga
     9841 aacaggactt tgtagacttt caaatatgga agctgtgcaa tttcacccaa cgcctattgt
     9901 cccaagtgga attttactta ctgaagggtg tcgtggagat ggtggaattt tacgtgatgt
     9961 ggatggatat cgtttcatgc ctgattatga gccagagaaa aaagaacttg caagccgtga
    10021 tgtggtaagt cgtagaatga tggagcatat tagaaaaggt aagggtgtaa aaagtcctta
    10081 tggcgatcat ttgtggcttg atatttccat acttggccgt gcacatgtag aaaaaaatct
    10141 tcgtgatgtg caagatattt gcaaaacttt caatggtatt gatcctgctg atgaaggtcc
    10201 aaaaggttgg gctccagttt tacctatgca gcattattct atgggtggca ttagaacaaa
    10261 acctacaggc gagagtcaat ggttagatgg tctttttgct tgtggcgagg cagcgtgttg
    10321 ggatatgcac ggatttaacc gcttgggagg aaatagctgt gctgaaaccg ttgttgcagg
    10381 tatgattata ggggattatt ttgcagatta ttgtaaaaat aatggtgaag ttatcgatac
    10441 aaatatagta aaagactttt taacaaaaga ataccaatat ttaaaatctt tagtagataa
    10501 agaaggtaaa tattctgttt ttgaaatcaa aaatagaatg aaagaaatca tgtgggataa
    10561 agtagcaatc tttagaacag gtgaaggctt aaaagaagct gttgatgagc ttgaaaaact
    10621 ttataaagaa tctcaaaatg taaaagtaca ttgtaaagag cttgattgtg caaaccctga
    10681 gctagaagaa gcttatagag ttccaagaat gcttaaagtt gcactttgtg tagcttatgg
    10741 agcgttatta agaactgaaa gtcgtggggc gcactataga gaggattatc caaaaagaga
    10801 tgatttgaac tggatgaaga gaactttaac ttactgggta gagggcgaaa gcttgcctcg
    10861 tgttgaatac gatgaacttg atattatgaa aatggaaatg ccacctgcat tccgtgggta
    10921 tggtgctaaa ggtaatatca tagaaaatcc tttaagtgaa aagcgtcaag ctgaagttga
    10981 tgcaatccgc gaaaaaatgg aagctgaagg taaaaatcgt cacgaaattc agcacgcttt
    11041 aatgccttat gaattacaac caaaatataa agcgctaaat caaagaatag gagtggatta
    11101 tgagtagaaa attaacgata aaggcgttta aatataatcc tttaagcaaa atttcaaaac
    11161 ctcattttgt aacttacgag cttgaagaaa ctccttttat gacagttttt gtgtgcttga
    11221 ctttaatccg cgaaaaaatg gatgcggatt tgagttttga ctttgtttgt cgtgcaggga
    11281 tttgtggatc ttgtgcaatg atgattaatg gtgtgccaaa gcttgcttgt aagactttaa
    11341 caaaagatta tcctgatgga gttatcgagc ttatgcctat gcctgcattt agacatatta
    11401 aggatttgag tgtcaataca ggcgagtggt ttgaggatat gtgcaagcgc gttgaaagtt
    11461 gggtacataa tgaaaaagaa accgatattt caaaaattga agaacgcata gaacctgaag
    11521 tagcagagga aacttttgag cttgatcgtt gtattgagtg cggaatttgt gtggcttcgt
    11581 gtgcaactaa gcttatgcgc ccgaatttta tcgcagcaac agggctttta agaacagcta
    11641 gatatttaca agatccgcac gatcatagaa cagttgaaga tttctatgaa ttagtgggcg
    11701 atgatgatgg tgtttttgga tgtatgtctt tattggcttg cgaagataat tgtcctaaaa
    11761 atttaccttt gcaaagcaaa attgcttata tgagaagaca acttgttgct caaagaaata
    11821 aataatattt tccccttaaa aaggggaaaa ttatgaaaga attactccaa aaactctggc
    11881 aaaatgaact ccagctttta gattttaatg caagctttaa agataaaaat attcttgata
    11941 tttccgaact tgctatcata ttgagtgtta ataaggataa ttatgaaaga tattttctct
    12001 taaaagaatt tagcaatatt tgtaaaaaaa ttgatttaag agtagatatt tttagcattc
    12061 aaaaagctca aatttgtgtt ttaaatatgt ttagggaggg ttttatacct aaacaagatt
    12121 tattaaaagc cttgcgaatt ttgcaaaaaa tttcaaacaa tgctgaaatt ttagaatata
    12181 tacaaaatat tcaagttcaa agtatcgata aaaaagcttt gtttcaaagt ggttttaatg
    12241 agcttaatca tatcaatatg gaacttagta aattgagttt tgatgaaaat agcaaaataa
    12301 gacttcaaaa gactttagag aaatttcaaa aattagaatt taatatagct ataacaggtg
    12361 ttatgaattc aggaaaatca agcttgctta atgcgctttt aaaagaggat tttttggggg
    12421 tttctaatat ccctgaaacc gcgaatttga ctttattaag ctatggcaat actcaagagg
    12481 ctgtgattta tttttgggat actcaagaat gggataatat attaaaaagt tccaaattta
    12541 gcaaggagct taaagaattc atcgatgagc ttgctttaaa aatcgatatt aaagaatatg
    12601 ttcaagataa ggctttaaca caaaaaatca atctaaagga gcttaaagag tttagttctg
    12661 ctaaaaacca aatttctgct cttattaaga agatagaaat caaaagcaat ttggaatttt
    12721 taaaaaacaa tatctctata gtggatactc caggacttga tgatatagtc gtgcaaagag
    12781 aaattctaac taatgagtat cttaaagaaa gcgatttttt aatccatctt atgaatgctt
    12841 ctcaagcttt aacacaaaaa gatgctgaat ttttaatcca ttgtttattg aattctcggc
    12901 ttagcaaatt tttaattgtc cttaccaagg cggatttgtt aagccaaaaa gatttagatg
    12961 aagtgataaa ttacaccaaa gaaagtctta aggctagact tgaaaatttt gacacgcatt
    13021 tgatagaaaa gatagatttt ttatgtgtaa gcgcaaaaat ggcaagtgat ttttacaagg
    13081 gtttatcttc tgaagaaagc tttaagaaaa gtggcatgaa agaatttgag gaatatcttt
    13141 ttaatgagct ttattctgga gaaaaaagta aaattatttt acaagcctat aaaaaagaat
    13201 tgcttttaga gcttagaaat attttaaatg aatatgaaat gcaaaacaag cttataaaag
    13261 aagacaggca aggcttaagc gaagaaaatg ataaactttt attggaattt aaggctaaag
    13321 aagaagcgct taaggaggca aaagaagaga tttcaaattc gattttaaat cttgaaaatt
    13381 ttgaaaatgg ggtggataat cttgttttat tattggctaa aaagctcaaa gagcgtttga
    13441 ttgatgagat taaatatcta aaagataaag cccaaaaaat taacattaat cgtattttaa
    13501 atatgataga tatcacggtt aaagatggta ttaatgatat tttaagagaa gttaaatttg
    13561 aaaatattaa aaaaatagag gaattaaaaa caagtttggc tttaaaatat gatttcttaa
    13621 aagatgattt tgacaatgga tttgaaggct ttaaagatga aatttctaaa aagatagaaa
    13681 atatttttag tgatgaaaaa tttgcattgt taagactgca aatcgagcaa attatctcta
    13741 ccaaagtcga tttatttgag cttgaaacaa aattaacaga agtgattttt agcacttttg
    13801 aaagttttaa tataggtgct atattaaagg atttggatat caatggcgcc ttttttgctt
    13861 tcttgaatga aagaatgaaa aattatgaag tattgcaaaa agaaaagtta gcgagtattg
    13921 aacatttaat caataatctt aaaaatcaaa atgctgacat tttattttct tatgagggaa
    13981 atttggaaaa aattgcaaaa ttacaacagc ttgaagtgga gcttatgaat gcaaattaat
    14041 attttaaatc attttataaa ggcttatgaa gatgcctata atatagattt tgataaaagt
    14101 tttgaagggc aaattaaaat gttgtgtaaa aaactaaatg agcctttcat gcacccaagc
    14161 tataatctta ttcaagagct tgaagaattg agtttttctt tagataaaaa tattaatatt
    14221 gctatcatag gacaattttc aagtggaaaa tcaacccttt tgaatttaat cctaaaaaaa
    14281 gaatgcttgc ctactggagt agtgcctgtt acttttaaac ccactttttt gcgttatgcg
    14341 gatgagtatt ttttaagagt tgaatttcaa gatggaagtg atgaaatcac tcatatagag
    14401 gagttggcaa aatacacaga tcaaagaaat aatgtaaaag aaacaaaaag tttgcatatt
    14461 tttgcaccca tacctttgct taaaaaaatc accctagtgg acactccagg gcttaatgct
    14521 aatgaagatg atactttaac caccctaaag gagctccaaa atatccacgc ggcaatttgg
    14581 ttaagtttga tcgataatgc aggaaaaaag agcgaagaag atgctataaa ggcaaatttg
    14641 gagcttttgg gtgaaaatag catttgtgtg ttaaatcaaa aagataagct tagcgctcaa
    14701 gaattagaaa atgtgttaaa ttatgccaaa acagtttttt ctaaatattt taaagaatta
    14761 attgccattt cttgcaagga agcaaaagat gaaacaaaat atgaagaatc taattttaat
    14821 cttttgttag attttttaga taacttagat gagaaagcct taaaacaaaa atttacaaag
    14881 agaaaaatgc ttcatttatg tcaagtttta gaggatgaaa ataggctttt tgtggatatt
    14941 tttgataagc ttgcaaatca atttcaaatt tatcaagaga aattaaattc ttcttttgat
    15001 gattttataa aagaagttca aattttaaat catcaaattt taaataagct taaaagcatt
    15061 ggcgaaagaa ttgcgagtga aatttttaat tgcattaaag aaaaagaggc tcatttttat
    15121 aaagaagcca agggattttt gaaaaaagat ttgtatgtaa aatacgatta taaagctcct
    15181 tttatttcga gcgatgatgc ttttttggca atgttttaca acagcgatat aatgaataaa
    15241 gaatttaaaa aaatcaaaaa tgaaatttac gaatcatttg aaaaaataaa acaaaaattg
    15301 aaagatttta tagacaattt agaaaaagac attttgcttt ttaaagctga attttcaaat
    15361 atacaaaaag ataatatctt gcaaagcgat aaaaatttta gcgaacttag ggctttttgc
    15421 aatgcaagcg atgagtactt tttaaaagac tttaaagagc ttttatttaa aagtttgcta
    15481 gagttggatt tattttttga aaagttaaat ctcaaagctt ttgcaaatta tgcaaacgct
    15541 acaaaattaa gcttggcatt tttcagtaga aaaatcaatg aaagtcgagt tctttatgag
    15601 ctagatagtt ccgaatttac gcttttttat cctaaaaaga gtgaaattta tgaaagggtt
    15661 ttaactgagc ttaatgctta tgaatttgaa gctttgctta tcaataaacc gattttagta
    15721 aaaatatcta atcatttttt agaacaaaat acaaatataa ttcaagaaaa aaataaaatt
    15781 ttagacttaa aaaaagtaga attacaaaaa cgcaaagagc aaattttaga agtcagaagt
    15841 gtattgaagg aaaatttatg aggatatttt tcattttatc tttatttttt cacactcttt
    15901 ttgctgtgga tgatttagat aatgctttaa ggctttatga gggaaataaa tttgtaaaag
    15961 catatgaaat ttttgaaaga ctttgcgaaa aagacaatgc tagagcttgc ttttctttag
    16021 cctatatgaa tgaaaatgct caaggagttg caagagattt tgataaagcg tataaatttt
    16081 tatgataaat cctgcaaact cggtttggct aaggcttgtt ctaatatggc cttaacctta
    16141 caagatctag gttatgttaa tgaatccctt ttggcattta acaaggcttg taatttaggt
    16201 gaatcttcaa gttgtaatca tatgggtttg gtttatgaag atgaaaaaga tggtcaaatg
    16261 gctacgcatt tttataaaag atcttgcgat ttaaaagacg ctagagcttg ctataaatta
    16321 ggctttttgt atgaaagagg agagcttgta aggcaaaatc ttaaatcagc tttggctttt
    16381 tattctaaat cttgtacttt aggttttgca gaggcttgtt atttgatcgg acgttattat
    16441 gagcttgaga aaaaagattt gaaaaaggct aagagatatt taggtatggc ttgcgataaa
    16501 aaacaccaag aagcttgtgc tgcttataga aagctaaatt ctcaagatat agaaatttat
    16561 taaaatgtca tcaaaaatat tttaagaaac taaactaaaa ttgattggat tattttgtga
    16621 attttgttga taaattttgc caatgaaatt tttaaagtct ttgtttgctt gtgtttcttc
    16681 gaaattatct ttagaatctt gattatttat atcaagattt tcttgctttt cttcgttttc
    16741 ttcgttttct tcttttttct cttgtgcttc ttgcgcttta agttttgttg cttcagctct
    16801 tgcttcaaat tccattttta gagcatttgc agcgacttta taatcttgcg gactaggatc
    16861 agcaggcgcc atggctgctg caacgacttg acgcgcattg gcgatagttt cttcaggtgt
    16921 ccttcctttt tgcattctta taggaacttc acctgctgtg gcatacattt gattatcagg
    16981 tcctcttgtg tagctaaagc ttgcagctcc agctaaacca cctccagcgg cttgatgtgc
    17041 tgcttcgtga gcttttacat ttctgtctat actttgaagc tcacgcactt gttgtacttg
    17101 ttgtatggta agctcaacgc catttatcat ttgagtttgt tcattgtttt gttttgagtc
    17161 tttattttgt gagtttgtat tttctgtatt ttcttgttcg gcattatttt tttgtgtttt
    17221 atcataataa gaggaattgc tagcatagtt gtaatttaag ccaatttgca tttttcctcc
    17281 tttatttttt tgtatatttt agacaatatt aacgcatttt gacttaaaat tttgataaat
    17341 tttgtaaaat aacaatcaat acaattttaa aggaagatta atgatttatg agaatgactt
    17401 gatttatatc gaaaaagagg aagctcaagt gccatggatt aaaattttta ccaagcaagt
    17461 ttataaagaa tttagcgatt gtccctatga acttcaaaaa gaaatttttg acaaaatttt
    17521 gcgatgtgaa aaggctatga tagaatttta caaacctgaa aaaatcaata ttgcttcttt
    17581 tgcaaactat gttccaaggg tacattttca tataatggcg agatttaaag aggatgcttt
    17641 ttttccagaa tgtatgtggg gcaagcagca aagagaatta aaagacttaa atttgcctag
    17701 ttttgatgaa tttgtgattt ttcttaaaaa taaaatggac taaaattatc attaatggtt
    17761 gattgttttt tgtttattag aattcttttt acataaaaat acaaaaaaag gaaaaaaatg
    17821 aaaaagattt tattaagctc tcttgttgca gcttctttgt tgagtgcagg tttatttgct
    17881 aaagaatata ctttagataa aactcacact gatgtaggtt ttaaaattaa acatttgcaa
    17941 attagcaatg taaaaggaaa ttttcaagat tatgatgcgg taattgactt tgatcctgca
    18001 agttttgaat ttaaaaaact tgaagcaaca attaaagtag catctgtaaa tacagacaat
    18061 caaacaagag ataatcactt acaacaaaat gattttttca aagcaaaaca attccctaat
    18121 atgacttttg taatgaaaaa atatgaaaaa atcgataacg aaaagggtaa aatgacagga
    18181 actttaacca tagcaggcgt ttctaaagat gtggttttag atactgaaat cggcggtaca
    18241 gctaagggta aagatggaaa agaaaaagta ggtttttctt taaatggtaa aatcaaacgc
    18301 tctgatttta actttgcgcc aggtacttca actattactt taagtgatga tattaattta
    18361 aatatcgaag ttgaagcgaa cgaaaaataa ttttttagtc taagagtctt gctcttagac
    18421 tttgtaaatt tttatccaaa ttttcttcac tttcttgcca aatcaattta aaatccggtt
    18481 taaaattttc attttctaaa ttaaattccg tgtttttcaa ggtggattct aaaaaagcaa
    18541 gatgatttaa agcttgattt ttatcattaa aaattaaaat aaaatcattt tctacgataa
    18601 aaatttttgc tctaaagcgt tttaaaattt ttgcaatttg ttttaaaatg agtttggtat
    18661 agctttcttt ggtatctttt agttcattaa aatgaagcaa ggcaatgata tagttgtttt
    18721 ttccttttgt aaagcgtgta aggctttttt cattgggtag ctttgttaag gtgtcaaaaa
    18781 aagctaacct ataagcgtga tttaaaagat aaaaacaaaa aaccaaactt gcaaattcaa
    18841 aatatcttat tcctgctcct tcttggaata aaaattgaaa atacgcagta aaaaatgcga
    18901 taagaagata atattcttta gttttaaaag ttttgataaa aatgagtatt aagccgacta
    18961 aaaaaaataa aaatcctaat tcactcacag gtttaaaaaa atttaatgta ataaaatgaa
    19021 attctaaacc agcgctattg aaagtagtat ttctaggtaa aatgatgctt aaaacgccta
    19081 taaaaataag ggttgtaatt gaggcgatat tttttttatt taaaattaaa acatgatgtt
    19141 ttccaaggca aaatagagta aaaatcatag gtaaaaacaa agccacaaat aaattagctt
    19201 gaaaaaaact tgcataaaaa taaggcaact tagctcctag taatactaaa gtcaaaaaga
    19261 aaatttttga atttttaaag taaaaggata gcacaagagc tgaaatttca aaaataaaac
    19321 tcaatgatat taaaaaatct aataaaaaca tttcaaatcc ttgattttaa taaaagtgat
    19381 aattgtatag aaaaaagctt aaaagcggat tttatttaaa tttagcaatt tcatcttgta
    19441 tggtttgttc tatatgaagc aattcttcat gagttttttt gctattttct aaaagttcat
    19501 caaatttaaa gccaagcata acaatacgat ataaattggg tttgtatttt ctccaattat
    19561 ataaagtgct aacatcaatg tctagttcat atgccata
//
LOCUS       DBBXRO010000020        19403 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.020, whole genome shotgun sequence.
ACCESSION   DBBXRO010000020 DBBXRO010000000
VERSION     DBBXRO010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19403
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.020"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..489
                     /locus_tag="ACJFEZ_000526"
     CDS             <1..489
                     /locus_tag="ACJFEZ_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HGG0916667.1"
                     /translation="SMEIKMHWVFKNKYVAHYHPVYILPYLCAKEYNFKNYNVIDFVL
                     PGNDLYEMLSKNYIYEEKGIVLLRNHGVVIYAEQIQDVLELYNQLKNDFFEENDFAYT
                     PDDAVDKTNGELWLFRNAIENIASKKQINLAPLKANEIYKLLNLSDEKYRKKIIESES
                     LG"
     gene            486..1982
                     /locus_tag="ACJFEZ_000527"
     CDS             486..1982
                     /locus_tag="ACJFEZ_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HGG0916668.1"
                     /translation="MNIIIPATGIGKRFKEAGYKDLKPFIKVMEDKIILDYVIECFDI
                     QNDAFYFIIQESEKNKFEDFISSRNINARVIVYTGEKLGPAGSLYGVFLQLEDILNEE
                     VIISYCDFGQEWNYKDFLKFIEENQDAQAVIPCYTGYHPHLIPLENVYAACKVYDNTY
                     KVYEVIEKYNSKNKFEEYYSSGIYYFKSLKLAMEAIKKQIDAKDMISGEYYISVTNNY
                     LENVLCYPFIEKFYQFGTPKDFEYVKDKLNSQDVYNEKIKIQNTVILSAGRGERFLNL
                     NFNQPKPFLPLGDSTIVENIINTLKNVETNIICVGAQDHEKYWENISKEVRFVKPNKI
                     GAAYSYKESCGDLKGDVLILPCDLIAKHINEEFKSLQKEYEIIIFVTQASRYNMNNPH
                     YFTWVDGKDGKVDAISVKNRPNDTDLVMIGSFYFKENSLLLEYINKIFQEDIKTNGEF
                     YIDNVFELLIKTHKVGYIIVDNYFSFGTPDEYLENKYWYNISKSKMRD"
     gene            2020..4047
                     /locus_tag="ACJFEZ_000528"
     CDS             2020..4047
                     /locus_tag="ACJFEZ_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HGG0916669.1"
                     /translation="MKFHTTSKKLIKNVKDFYKIALYKAYKNIDKEDVFIGWGRKNSG
                     LKAIALAKKHHAKFILLEDGFLRSLNLGVENSPSFSTVKDDVGIYYDASTPSRLENIL
                     NTYEFSPKELALAKKAIELIKKEKLSKYNNTLCIPQELFSANEERVLIITQVANDTSL
                     RFGLASDFSTQDIINDALKENPNAKIYIKIHPDVLSGKKQSDFSMQDLPSRCVILKEN
                     YNPIELLSHFKKVYTKTSGMGFEALMLGCKCVCYGMPFYAGWGLTQDKLECKRRVKKR
                     SLEEVFYAAYILYSEYFNPYLNQKSDIFDTIHTLAKYKKIEQVNSHTLYFLGFTLWKR
                     WFMKPFFKAKNNKIIFLNSLDELYKANLNSEDKIFIWGKKYDKALLAKDFNNEIFLVE
                     DGFLRSVFLGSDLTRPFSLIVDSKGLYVDPNHPSDLEELLQNHEFDESLKQRAKKLIT
                     TITQNKFSKYNGLKHETLNFNTNKKIILIPAQVEDDASMILGGADFDTLKLLQSVRVV
                     NKDAFIVFKPHPDVLSGNRKGLKDKDIILKYCDEIIENVSIDSAINACDEVHTITSTS
                     GFDALLRAKKVVVYGKPFYAGWGLTQDLHRISRRTRVLSLEELVAGVLILYPRYIHPK
                     SKNLCEVELALDIMLALQKDYFSKRWLKILIDFRIFMLRKIRRIGEVFIKR"
     gene            4044..5225
                     /locus_tag="ACJFEZ_000529"
     CDS             4044..5225
                     /locus_tag="ACJFEZ_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HGG0916670.1"
                     /translation="MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKL
                     NFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKIDAIVMYNDCRLIHAKAIKVAKG
                     LGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
                     MAFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKFTEKKLNQKIY
                     SLEKKYFLAILQVYNDTQIKHHYKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRG
                     YRNYSKLINGLSQKYHVEGRIFYVHDTYLPTLLKNALGCITINSTVGLSAILEGCPTK
                     VCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFL
                     G"
     gene            5294..6415
                     /locus_tag="ACJFEZ_000530"
     CDS             5294..6415
                     /locus_tag="ACJFEZ_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HGG0916671.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHRFDFKAEISGIE
                     KNENFPSFKIDCKDVQTRYHFLTWNDIVKKNWSQSYKDALMDCYSFFRIYTITGLFLK
                     FGKESIYQLITGYYPFFYVIFSLLLSLGLALGSFVFLQNHIPSFLAIVIGIVLGFLLN
                     RFLFKLGRKLAVFWIARICAFCATWKEKRLGAMEQRIKLFADEILKSLKQNENRQDYE
                     LILVAHSVGTIVCIEVLEHILKQNLDKRVLDKLKILTLGECIPLTSYQKNADDFRKKL
                     EFVSAFDLKWYDYTSIIDGACFPQVDFFRTSGVQANFTPPFLSAKFHTLYEKNEYKKI
                     KRDKNKAHFLYLYSPHIKGSYDFFAFIVAPKFLEEKVKI"
     gene            6412..7782
                     /locus_tag="ACJFEZ_000531"
     CDS             6412..7782
                     /locus_tag="ACJFEZ_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HGG0916672.1"
                     /translation="MSQCPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVKEFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRISKVFNLMSEAVSDMMKRFEKYPNASIIEVDEAMTFITADVIFRTIMS
                     SKLDEEQGKKILDAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQALS
                     DIIKPRYDAVSRGKAENFEDILGSLLLVVDAQTNQRFSFEEILDQVAMLFLAGHETTA
                     SSLTWTLYLLSLYPDEQEKAYKEIIQVLQGENIQISHLKQFRYLTHIFKESLRLYPPV
                     GFFAREAKKDTKVRDKMIKKGSGVVIAPWLIHRHEGFWANPHEFKPSRFEGEYKKDAY
                     LPFGVGERICIGQGFAMQEAILILANILKKYKLELEEGFVPDVVGRLTIRSANGMRIK
                     FSKREP"
     gene            7779..8201
                     /locus_tag="ACJFEZ_000532"
     CDS             7779..8201
                     /locus_tag="ACJFEZ_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916673.1"
                     /translation="MKRVKARIRANFRNRIKRNLKGSLKEKLAGTILLCAIVPLAICG
                     YLLIVIVGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARVVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGKR"
     gene            complement(8204..8551)
                     /gene="acpS"
                     /locus_tag="ACJFEZ_000533"
     CDS             complement(8204..8551)
                     /gene="acpS"
                     /locus_tag="ACJFEZ_000533"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HGG0916674.1"
                     /translation="MRIGCDIVAISRIDTIYQKHGNAFLDKFLNQNEQKLIKSSSTLA
                     GFWAAKEAASKALGVGISKECGFLDIEISKDSKNAPHLKLASHVLEKFKINSTSLSIS
                     HDNGFAIAVVALD"
     gene            complement(8551..9087)
                     /gene="fliL"
                     /locus_tag="ACJFEZ_000534"
     CDS             complement(8551..9087)
                     /gene="fliL"
                     /locus_tag="ACJFEZ_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HGG0916675.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            9199..10563
                     /locus_tag="ACJFEZ_000535"
     CDS             9199..10563
                     /locus_tag="ACJFEZ_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HGG0916676.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLAKGCKNVS
                     VGYDARYSADELYRYLVSGLNKAGIQVYNIGLVPTPLGYFSLYEGMKFDANIMITGSH
                     NPKDYNGFKITIGKESFFGAELKEFSKEVYKHLEDEIEENLEAQKYDILSLYVNFMCE
                     QFNFLKDFNYKFAIDCSNGAAGVVIEPLVKALNLKAHVMFSNPDGQFPNHEPDPTEEK
                     NLHAIKNFLNENQEYPLAFAFDGDADRMVALSKTHIFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMISALPKLYTTPEIKIPVSEEEKFKLVDEFKKAIEKGDL
                     EGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEASSLEQAKELEAKVFKLFNDI
                     KESV"
     gene            complement(10785..11060)
                     /locus_tag="ACJFEZ_000536"
     CDS             complement(10785..11060)
                     /locus_tag="ACJFEZ_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916677.1"
                     /translation="MGGYLFFFGLIILFALFDSDFWEFFKFFLQIRMILIPLRVVFII
                     LVPFHLENSFLGKTFYFLENLFCLAFAILLIVAIIMPFLERISKIFF"
     gene            complement(11194..11520)
                     /gene="rsfS"
                     /locus_tag="ACJFEZ_000537"
     CDS             complement(11194..11520)
                     /gene="rsfS"
                     /locus_tag="ACJFEZ_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HGG0916678.1"
                     /translation="MQKRVDLIVKILDEKKAEDIKTFDMSEQDYFVKYVIIAATLGEK
                     HALSLIDELKTKLKAKGEEFLNIESSEEWSVIDLGDILIHLLTPEHRGIYNIEELLES
                     LKKIKA"
     gene            complement(11549..12094)
                     /gene="nadD"
                     /locus_tag="ACJFEZ_000538"
     CDS             complement(11549..12094)
                     /gene="nadD"
                     /locus_tag="ACJFEZ_000538"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_function: GO:0004515 - nicotinate-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HGG0916679.1"
                     /translation="MKIALFGGSFDPPHKGHDAIIKEALAKLDIDKLIIVPTFINPFK
                     KGFFADEKQRFAWVNKLWGNLEKVEICDFEIKQKRPVPSIESVEYLYKIYHPSKFYLL
                     IGADHLEKLHLWHDFERLNSLVEFIIANRNDIEIPKNFKDLKTNIKIASSFIRSTLDT
                     HEVCDEIKNEVKNYYEKLQKN"
     gene            12156..13154
                     /gene="gap"
                     /locus_tag="ACJFEZ_000539"
     CDS             12156..13154
                     /gene="gap"
                     /locus_tag="ACJFEZ_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HGG0916680.1"
                     /translation="MAVKVAINGFGRIGRCVARIISKRDDIELVAINDTTDIELTKYL
                     FKYDTVHGEFEGSVENEGDDLIINGKKIKVFKSRDIKELDFAKYGAQIVLECTGAHLT
                     IEKCQGFLDMGVQKVIMSAPAKDDTPTYVLGVNSQNYKGENIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKTKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSKKVSKEELNEAFRKAAVTNLKGILMVDDD
                     ERVSSDFITCSYGAVVVSDLTQVIADDFVKVVAWYDNEWGYSSRLVDMAVYIANKA"
     gene            13157..14359
                     /gene="pgk"
                     /locus_tag="ACJFEZ_000540"
     CDS             13157..14359
                     /gene="pgk"
                     /locus_tag="ACJFEZ_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HGG0916681.1"
                     /translation="MSDIISIKDIDLSKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKS
                     KAANLKASEILMLENLRFEKGETKNDENLAKELASMAEVYINDAFGVCHRAHASVEAI
                     TKFFDENHKGAGFLLQKEIEFAENLIKRPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKAQGFDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQESPMKFVPSQEIPSGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHAISDGHATTVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     VLRSGGVQ"
     gene            14356..15027
                     /locus_tag="ACJFEZ_000541"
     CDS             14356..15027
                     /locus_tag="ACJFEZ_000541"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HGG0916682.1"
                     /translation="MIFAANLKCNHTRSSFKIYANILNQYLEAKNDDIIVFPPSIAFL
                     ENELNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDENLIKAKF
                     DFAKEHAYKIVFCIGEDLKLKNSNQTLDFLKKQLEVIDLDYKNLIIAYEPIYSIGSGV
                     SAKKEDIAKVLEFLSSLTQAPLLYGGSVNEDNIKDILNIKHCSGVLIGSAALKAENFI
                     KLIKG"
     gene            15031..15858
                     /gene="fabI"
                     /locus_tag="ACJFEZ_000542"
     CDS             15031..15858
                     /gene="fabI"
                     /locus_tag="ACJFEZ_000542"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HGG0916683.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACYEQGASLAFTFLNDALK
                     KRVEPIAEEFGSNFVYELDVNNSDHLDSIAEKIKKDLGEIDFIVHAVAYAPKEALENS
                     FLETSKEAFDIAMGTSVYSLLSLTRAVLPVLKEKGAILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGIKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINAPLKRNV
                     SIEDVGNSAMYLLSDLARGVTGEVHYVDAGYNIMGMGDVTKDENGNTVLCWDNQKGQ"
     gene            15858..17357
                     /locus_tag="ACJFEZ_000543"
     CDS             15858..17357
                     /locus_tag="ACJFEZ_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HGG0916684.1"
                     /translation="MAKLSNEELKDILIKRIEKIENSDLVDKKTINEESVKALAKHLS
                     LGNEIPALAQKFFELAPKTKVVWLHLCECTGCSESLLRADLPSFDELVFDFFSLEYHE
                     TLMAANGTKAEELLEHVLKEDFVLAVEGGVAAIDTFFLTIGAEGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLTQKVVNIPGCPPSDVNIIATLTYFAL
                     FGILPELDEQNRPVWAYGKCLHDLCERKAKFESGIFAEHFDDEKAKSGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANPFSYAKLVNQE
                     FSTEFALEEQIQILSSMDFEFESNLKLILQNIAKNKLGALLVENYKTSFEKNFIFIEQ
                     NFDENPMPSSDIWKYFEINFILAKGEFLQDKNDFLKAAQNYSFKHASPYDFKLTLNEK
                     SKLDVSKSFRMPLIYLCGGLDFEALAYSVLKAFEKNIKSVIDFNKQKAG"
     gene            complement(17354..19195)
                     /gene="feoB"
                     /locus_tag="ACJFEZ_000544"
     CDS             complement(17354..19195)
                     /gene="feoB"
                     /locus_tag="ACJFEZ_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HGG0916685.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGELVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIIILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEEAGNYLFGI
                     YLLGAILGLIAAKFLRSTAFRGIDEPFVMEMPKYRMPNWHLVWFMVFNKAKMYLKKAG
                     TFILVASLLIWFASNFPNNESNLDDFSAQERAVEQSYLGQFGKTIEPIFSPLELDWKL
                     SVSLVSGLAAKEVMISTMGVLYSLGKEVDETSSDLKGIIAKNIPLPSAVAYILFVMIY
                     NPCFAATIVFSKESGKIKYTFFLFLFTCISAYIVAFIGLNITKFVIN"
     gene            complement(19192..>19403)
                     /locus_tag="ACJFEZ_000545"
     CDS             complement(19192..>19403)
                     /locus_tag="ACJFEZ_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HGG0916686.1"
                     /translation="LKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNAT
                     IMVELDTSCVILRSDEAKTIEVNLI"
BASE COUNT         6742 a         2682 c         3514 g         6465 t
ORIGIN      
        1 tctatggaaa ttaaaatgca ttgggtattt aaaaataaat atgtagcgca ttatcatcct
       61 gtttatattt taccttattt gtgcgctaaa gaatataatt ttaaaaatta caatgtgatt
      121 gattttgttt tacctggaaa tgatttatat gagatgttaa gtaagaatta tatttatgaa
      181 gaaaaaggta tagtattgct acgaaatcat ggcgttgtta tttatgcaga acaaattcaa
      241 gatgtattgg agttgtataa tcaattaaaa aatgattttt ttgaggaaaa tgattttgca
      301 tatactccag atgatgcggt tgataagact aatggggagc tgtggttatt tagaaatgcg
      361 attgaaaata ttgcttcaaa gaaacaaatc aacttagctc cattaaaagc aaatgaaatt
      421 tataaattat taaatttgtc cgatgaaaaa tatagaaaaa aaattataga aagtgagagt
      481 ttgggatgaa tattataata cctgcgactg gcataggaaa aagatttaaa gaggctggat
      541 ataaagattt gaaacctttt attaaagtta tggaagataa gattattcta gattatgtga
      601 ttgaatgttt tgacattcag aatgatgctt tttattttat tatacaagaa tctgaaaaaa
      661 ataaatttga agattttatt tcatctagaa atatcaacgc aagagttatt gtttatactg
      721 gggaaaaatt aggacctgct ggaagtttat atggagtatt tttgcaatta gaagatatat
      781 taaatgagga agttataatt agctattgtg attttggaca agagtggaat tataaagatt
      841 ttttgaaatt tatagaagaa aatcaagatg ctcaagcagt aatcccttgc tacactggtt
      901 atcatccaca cttgatacct ttagaaaatg tatatgcagc atgcaaggtg tatgataata
      961 cttataaagt ttatgaagtt atagaaaaat acaactctaa aaataaattt gaagagtatt
     1021 attcctcagg tatatattat tttaaaagct taaaattagc tatggaagca ataaaaaaac
     1081 aaatagatgc taaagatatg atttccggag aatattatat ctcagtgacc aataattact
     1141 tagaaaatgt attatgttat ccatttatag aaaaatttta tcaatttggt actccaaaag
     1201 attttgaata tgtaaaagat aaattaaatt cgcaagatgt ctacaatgaa aaaataaaaa
     1261 tacaaaatac tgttatatta tctgccggca gaggggaaag atttttaaat cttaacttta
     1321 atcaaccaaa accattttta cctcttggtg attcgactat cgtagaaaat ataattaata
     1381 ctttaaaaaa tgtcgagact aatatcatat gtgttggtgc acaagatcat gaaaaatatt
     1441 gggaaaatat atctaaagag gtaagatttg tcaaaccaaa taaaattggt gcggcgtatt
     1501 cttataaaga gtcttgtgga gatttaaaag gcgatgtatt gattcttcct tgtgacttaa
     1561 ttgcgaaaca tattaatgag gaatttaaaa gcttgcaaaa agaatacgaa attattatat
     1621 ttgttacgca agcttctaga tataatatga ataatccaca ttattttact tgggtagatg
     1681 gaaaagatgg caaggtggat gctatatctg ttaaaaatag gccaaatgat acagacttag
     1741 taatgatagg aagcttttat tttaaagaaa attctttatt gttagaatat ataaataaaa
     1801 tatttcaaga agatataaaa actaatggcg aattctatat agataatgtg tttgaattat
     1861 taatcaaaac acataaggtg ggctatataa ttgttgataa ttatttttct tttggaactc
     1921 cagatgaata tttggaaaat aaatattggt ataatatttc taaaagcaaa atgagggact
     1981 aattttgata taatctcttt ttaaattaaa gagagattta tgaaatttca caccacttca
     2041 aaaaaactta taaaaaatgt taaagatttt tacaagatag ccttgtataa ggcctataaa
     2101 aacatagaca aagaagatgt ttttataggc tggggcagaa aaaattcagg tttaaaagct
     2161 atagctctag ccaaaaaaca tcatgctaaa tttatacttt tagaagatgg ctttttgcgc
     2221 tcattaaatt taggcgtaga aaatagtccg agtttttcta cagttaaaga tgatgtgggg
     2281 atttattatg atgcgagcac tccctcaagg cttgaaaata ttttaaatac ctatgagttt
     2341 agccctaaag agctagcttt ggcaaaaaaa gccatagagc ttatcaaaaa agaaaagctt
     2401 agtaagtata ataacactct ttgcataccc caagagcttt tcagcgccaa tgaagaacgc
     2461 gttctaatca tcactcaagt ggcaaatgac acttcacttc gatttggttt ggcaagtgat
     2521 ttttcgactc aagatatcat aaatgacgcc ctaaaagaaa atccaaatgc caaaatttac
     2581 attaaaatcc atcctgatgt gctaagtggt aaaaaacaaa gtgattttag catgcaagat
     2641 ttacccagta gatgcgtgat tttaaaagaa aattataatc ccatagaatt attaagccat
     2701 tttaaaaaag tctatactaa gacttcaggt atgggttttg aagctttgat gctaggatgc
     2761 aaatgcgtat gttatggtat gcctttttac gcaggatggg ggctaactca agataagcta
     2821 gagtgcaaaa gaagagttaa aaaaagatct ttagaagaag ttttttatgc tgcttatatc
     2881 ctatacagcg agtattttaa cccctactta aatcaaaaaa gtgatatttt tgatactatt
     2941 catactttag caaagtataa aaagatagag caagtaaatt ctcatacttt atatttttta
     3001 ggctttactt tatggaagcg ttggtttatg aagccatttt ttaaagccaa gaataataaa
     3061 atcatttttt taaactcact tgatgaactt tataaagcga atttaaattc cgaagataaa
     3121 atcttcattt ggggtaaaaa gtatgataaa gctttgctgg ccaaagattt taacaatgaa
     3181 atttttttag tagaagatgg ctttttgcgc tcagtttttt taggttcaga ccttacacgc
     3241 cctttttctt tgatagtaga tagtaaaggt ttgtatgtag atcctaatca tcccagcgat
     3301 ttagaagagc ttttgcaaaa tcatgaattt gatgagagtt taaaacaaag agctaaaaaa
     3361 ctcatcacca ccatcacgca aaataaattt tcaaaatata atggtttaaa acatgaaaca
     3421 ttaaatttta ataccaataa aaaaatcatt ttaattcccg ctcaagtaga agatgatgct
     3481 tcgatgatct taggtggagc agattttgac accttaaagc ttttacaaag cgtaagagtt
     3541 gtaaataaag atgcttttat cgtttttaag cctcatcccg atgttttaag tggaaatcgt
     3601 aagggtttaa aggataaaga tatcatttta aaatactgcg atgaaattat agaaaatgtc
     3661 agtatagaca gtgctataaa tgcatgcgat gaagtgcata ccatcacttc tactagcggt
     3721 tttgatgcgc ttttgcgtgc taaaaaagta gtagtttatg gaaagccttt ttatgcaggc
     3781 tggggcttga ctcaagattt gcatcgcatc tcaagacgca caagggtgct tagcttagaa
     3841 gagcttgtcg caggagtttt gatcctttat ccaagatata ttcatccaaa gagtaaaaat
     3901 ttatgtgaag ttgagcttgc tttggatata atgcttgctt tgcaaaaaga ttatttttca
     3961 aaaagatggc taaaaatttt aatcgacttt agaattttta tgcttagaaa gataagaaga
     4021 ataggtgaag tttttataaa aagatgaaat ttagcgataa gattaaaaaa gaatttagcg
     4081 gtaaaactgt cttgctttta caaggacctg tagggacttt ttttcaccgc cttgccataa
     4141 agatgaaaaa aaataaaacc aaagttttta agcttaattt taatggaggg gattttcttt
     4201 tctatccaag tggaaaaagg tgcaagtgcg acgaaaagga tcttgaaaat ttttatgaga
     4261 gcttttttaa agaaaaaaag atagatgcta ttgtgatgta taatgattgc cgtttgatcc
     4321 atgcaaaagc tatcaaagta gctaaggggc ttggcattgg tatttggatt tttgaagagg
     4381 ggtatttaag gccttattgt atcacttttg aaaaagatgg ggtcaatgca aactcctcct
     4441 tgcctcgcga taaaaatttc tatctttctt gcaatatcct tacaaaagaa agcataaaag
     4501 aaattccagg tggttttaaa tttatggctt ttagtgcttt tttgtattgg cttttttctt
     4561 ttctgctagc tccttttttt aacaacaagc ttcatcatcg caccttattt ccttttgaat
     4621 ttttattttg gtttagatct ttatatagaa aataccttta taaattcaca gaaaaaaaac
     4681 ttaatcaaaa aatttatagc cttgaaaaaa agtatttttt ggctattttg caagtttata
     4741 atgatacgca aattaagcac cattataaaa aaagcataga agaatttata gaagagctta
     4801 tcctttcttt tgcaaatcac gcaagagcaa agtcttatct tatctttaaa catcatccta
     4861 tggatagggg atatagaaat tattctaaac ttataaatgg gctaagtcaa aaataccatg
     4921 tagaaggaag aattttctat gtacatgata cttatttgcc tactctttta aaaaatgctt
     4981 taggttgcat cacgattaat tctacagtgg gtttaagtgc tattttggag ggctgtccta
     5041 ctaaggtttg tggaaatgca ttttacaatt ttgaaggcct agcttatcct aaaaaactcc
     5101 aatttttttg gcgcgaagct catgcttaca aacccaatcc taatttggtt ttaaatttca
     5161 aaaactatct tttaaataca aatcaattca acggcaattt ttacaaaaat tcgtttttag
     5221 gttgataaaa gtccgattaa gacagctttt aaaacaaaat gttataatca atctaaaaaa
     5281 gaaatgaatt tttatggata gagaagtatt ttatatagcg ggctatgatc ctaagagtta
     5341 tagattttat tatgatttat ttaagaaaaa tttaaaagat tattctcata gatttgattt
     5401 taaagcagag ataagcggga ttgaaaagaa tgaaaacttt ccttctttta agattgattg
     5461 taaagatgtt caaacacgct atcatttttt aacttggaat gatatagtta aaaaaaattg
     5521 gtctcaaagt tataaagatg ctttgatgga ttgttatagt ttttttagaa tttataccat
     5581 tacggggctt tttcttaaat ttggtaaaga atcgatttat cagctcatca caggttatta
     5641 tcctttcttt tatgttattt tttctttgtt attatcttta ggcttagctt tgggaagttt
     5701 tgtttttttg caaaatcata tcccttcttt tttggcgatt gttataggta tagttctagg
     5761 atttttactc aatcgttttt tattcaagct aggtagaaaa ttggctgtat tttggatagc
     5821 aaggatatgt gctttttgtg ctacttggaa agagaaaaga ttgggggcta tggagcaaag
     5881 gataaagctt tttgcagatg aaattttaaa gtctttaaaa caaaatgaaa acaggcaaga
     5941 ttacgaactt atcttagtag ctcacagtgt tggaaccata gtttgcatag aagttttaga
     6001 gcatatttta aaacaaaatt tagataaaag agtattggac aaattaaaaa ttcttacact
     6061 aggagaatgc attcctttaa caagctatca aaaaaatgca gacgatttta gaaaaaaact
     6121 tgaatttgtt tctgcatttg atttaaaatg gtatgattat acttcaataa tcgatggagc
     6181 gtgttttcca caagtggatt ttttccgtac aagcggggtg caggctaact ttaccccacc
     6241 gtttttaagt gctaaatttc ataccttgta tgaaaaaaat gaatataaaa aaattaaaag
     6301 agataaaaat aaagcacatt ttttatatct ttatagtcct catattaaag ggagttatga
     6361 tttttttgct tttattgtgg cacctaaatt tttagaagaa aaggtaaaga tatgagtcag
     6421 tgtccatttt ttcccaaacc ctataaaaat aaagcttcaa cacttttaac ctttttatta
     6481 aaacgcagat catggcttga tggtctttat gagcgtagct ataaaatgca aacaggttat
     6541 gtaaaaatgc caaattttga tctttatgtg atcaatgata ccaaagaagt taaaagaatg
     6601 atggtggatg aggttaaaga attcccaaaa agtgcatttt tacatgagct tttaagccct
     6661 cttttagggg agagcatttt tacaacaaat ggtgaggttt ggaaaaagca acgcgaactt
     6721 ttacgcccaa gttttgaaat gactcgtatt tcaaaggttt tcaatctcat gagtgaagca
     6781 gtaagcgata tgatgaagcg ttttgaaaaa taccctaatg cttctattat cgaagtggat
     6841 gaggctatga ctttcatcac tgctgatgtc atttttcgta ccatcatgtc ttctaagtta
     6901 gatgaagagc aaggaaagaa aatcctagat gcttttgtga cttttcaaga acaaagcgta
     6961 catacggcta tgcgtcgtat gtttcgtttc cctaaatggc tttcttatgt gttgggtgat
     7021 cgtaagcgtg ctaaagcagg tgatgtgatc aggcaagctt taagtgatat cataaagcca
     7081 agatatgatg cagtaagtcg cggaaaagct gaaaattttg aggatatttt aggctcttta
     7141 ctcttagtag tagatgcgca gactaatcaa cgcttttctt ttgaggaaat tctagatcaa
     7201 gtggctatgc ttttcttagc aggtcatgaa acaacagcaa gctctttaac ttggacgctt
     7261 tatctactca gcctttatcc tgatgaacaa gaaaaagctt ataaagaaat tattcaagtt
     7321 ttacaaggtg aaaatataca aatttcacat ttaaaacagt ttagatacct aactcatatt
     7381 tttaaagaat ctttaagact ttatcctcct gtaggctttt ttgcaagaga agcaaaaaaa
     7441 gatacaaagg taagggataa gatgattaaa aaaggctcag gtgttgttat agcaccttgg
     7501 ctgatacaca gacatgaagg cttttgggct aatccgcatg aatttaaacc ttctcgtttt
     7561 gaaggcgagt ataaaaaaga tgcttattta ccttttggag taggagagag aatttgtata
     7621 ggtcaaggtt ttgcgatgca agaggctatt ttaattttgg ccaatatctt aaaaaaatac
     7681 aaattagagc ttgaagaggg ttttgttcca gatgtggtgg gtcgtttaac catacgttct
     7741 gcaaatggaa tgaggataaa atttagtaaa agagagccat gaaaagagtc aaagcaagaa
     7801 ttcgtgccaa ttttcgcaac cgcattaagc gcaatctaaa aggaagttta aaagaaaaac
     7861 tagcagggac gatcttactt tgcgccatag tacctttggc aatttgtgga tatttactca
     7921 tagtgatagt gggaactttt tttaatacag ctagagcaag gcaaggtgta agagctttgg
     7981 atcattttgt aaatgcaagt ttgtttaatg gctatgcttg ggaaagtgta tcttcacacg
     8041 cgtggcgcga aagaaataga aaaaaatggg caagggtagt gattaaaatc acagattttt
     8101 ttcaaaaaga tcattgcaaa agagccaata aaagagaaca acctgtcgtt gattttatac
     8161 tttcaagaaa tttagataaa caaactatag gtaagagata aaattaatcc aaagcaacta
     8221 ctgcaatagc aaaaccatta tcatgtgaga tgctaagaga ggtagaattg attttaaatt
     8281 tttctaatac atgagaagcg agttttaaat gaggagcatt tttgctgtct tttgaaattt
     8341 ctatatccaa aaagccacat tcttttgaaa ttcctacgcc taaagcttta cttgctgctt
     8401 cttttgcagc ccaaaaacct gctaaagttg agctagattt tatcaatttt tgctcatttt
     8461 ggtttagaaa tttatcaaga aaagcgttgc catgcttttg atagattgta tctatcctag
     8521 aaatggcaac tatatcgcaa cctatacgca tcaagaaact acaaaatccg taaaataaac
     8581 atttttaata aagccatcgg ttaaaatttc attgattttt ccaactagct catcttttaa
     8641 acgttctttg cctttttgtg tacttacttc ttcaaaagtt ttagctgtta atgtacgaat
     8701 aataatatca cgaatcaccg ggactttttt atcaagttca ggttttaaaa gttcgctatt
     8761 ttgttctagt tctatagtgc attttacata tcttgagccg ctatcgctaa gcaaatttag
     8821 ggtaaaagga tcaagtggat acataggacc tatattagca aaatcactac ctcgctgagc
     8881 aggagctgaa actttaggtt tatcggcttt tgcctcttct tttggagctt ctttgacttc
     8941 actttcatca cttgaactgc ttgaaataag ccaagcaatt actcccataa tactaagaag
     9001 taaaacaaaa agtaaaataa caataataat tacaagtgaa ccaccttttt tcttttttgt
     9061 ttcttcgttt tctaattctt catccataaa tttttccttt atttagtgaa attaatgtaa
     9121 aattgtagca aaattttctt ttctatccaa attttacatt ataaaaagaa atttattaaa
     9181 aagatttaag gaaaaattat gctagatgtg atttttagag aatacgacat acgcggactt
     9241 tatggcaaag aactcaatga aaaaagtgtc aaagctatag gtttttgttt gggacaaacc
     9301 atgcttgcaa aaggttgtaa aaatgtaagc gtgggttatg atgcaagata tagtgctgat
     9361 gagctttata gatatctagt tagcgggctt aataaagcag gcatacaagt ttacaacata
     9421 ggacttgtcc ccactccact tggatatttt agcctttatg agggtatgaa atttgatgca
     9481 aatattatga tcacaggttc gcacaatcca aaagattata acggctttaa aatcaccata
     9541 ggtaaggaaa gtttttttgg agctgaactt aaagaatttt caaaagaagt ttataagcat
     9601 ttagaggatg agattgaaga aaatttagag gctcaaaaat acgatatttt aagtctttat
     9661 gtgaatttta tgtgtgagca atttaacttt ttaaaggatt ttaattataa atttgcaatc
     9721 gattgctcca atggagccgc tggggttgtt atagagcctt tagtaaaagc tttaaattta
     9781 aaagctcatg ttatgttttc aaatcctgat ggacaatttc caaaccacga acctgatcct
     9841 acagaagaaa aaaatttgca cgctataaag aattttttaa atgaaaatca agaatatcct
     9901 ttagcatttg cttttgatgg ggatgctgat agaatggtag ctttgagtaa aactcatatt
     9961 ttttgtgggg atgagctttg ttatttgttt gcaaaaaata ttcctaatcc tagaatttta
    10021 ggcgaggtaa aatgctctaa aaatcttttt gatgaggtgg caaaatttgg tactattttt
    10081 atgggaaaaa caggacattc aaatattaaa aaaatgatga aagaaaaaga tattgactta
    10141 gcagctgaag taagcggcca tattttcttt aaacacagat attttggtta tgatgatgga
    10201 atttacgcat ttttaagagc cttagaactt gtttataaag gttttgattt agaaagtatg
    10261 atcagtgcct tgccaaaact ttacactacg cctgagatta aaattccagt aagcgaggaa
    10321 gaaaaattca aacttgtgga tgaatttaaa aaagcgatag aaaagggtga cttagaagga
    10381 gtaaagagtc tttgtgaaat cgatggagcc aggattgatt ttggtgatgg atgggcttta
    10441 cttcgtgcgt ccaataccag cccttatctt atcacgcgtt ttgaagcaag ttctttggag
    10501 caagcaaaag aacttgaagc taaagtattt aaacttttta atgatattaa agaatcggtt
    10561 taataagtat tttaggttta tttgtaaatt tagagaaaag cacgaaaaca agagcttttt
    10621 ctcatttata taacgcgttg tttgtgtgag aatgtagtaa aaatatacac taaagatcca
    10681 cttttatgat aaaaaactta aacaaaattg tgtgtacatt tttcctaaaa gcctttgatg
    10741 gtatttttgc cacacatcca agccttgaaa aacgcatagg atatttagaa aaatattttg
    10801 gagattcgtt ctaaaaatgg cataataatt gcaacgatta gtaaaattgc aaatgccaaa
    10861 caaaaaagat tttctaaaaa ataaaaagtt ttgcctaaaa aagaattttc taaatgaaag
    10921 ggcacaagga tgataaagac tactctaagt gggattaaaa tcattcttat ttgaaggaaa
    10981 aatttaaaaa attcccaaaa atcactatca aataaagcaa ataagataat taaaccaaaa
    11041 aagaagagat atccgcccaa aacatggccg aattgaaatt taaacgatat cttgcttgac
    11101 aatgagggca aaaaagctca ttggaaaact caaaaaaatc ataaaatttg tttatttttt
    11161 tgaaattttt agtgtatttt ttgcatttta agcttatgcc ttgatttttt taagactttc
    11221 taacaattct tctatattgt aaattcctcg gtgctcaggt gttaaaagat ggataagtat
    11281 atcacctaga tcaatgacac tccattcttc actgctttct atatttaaaa attcttcacc
    11341 cttggctttg agtttggttt taagttcatc gattaaagat aaggcatgtt tttcacccaa
    11401 ggtagctgcg atgatgacat attttacaaa ataatcttgc tcgctcatat caaaggtttt
    11461 tatgtcttca gctttttttt catctaaaat tttaacgatt aaatctactc ttttttgcat
    11521 ttttttcctt taaatttttg aaattgtatc agtttttttg taatttttca tagtaatttt
    11581 tcacttcatt tttaatttca tcgcaaactt catgggtatc tagggtgctt cttatgaaag
    11641 atgaggcgat ttttatattg gtttttaaat ctttaaaatt ttttggaatt tctatatcat
    11701 tacgatttgc gatgataaat tctactaaag aattaagtct ttcaaaatca tgccaaagat
    11761 gaagtttttc taaatgatcc gcaccgatta gaagataaaa tttgctagga tgataaattt
    11821 tataaagata ttctacgctt tcaatgcttg gtacggggcg tttctgcttg atctcaaagt
    11881 cgcaaatttc tactttttct aaatttcccc aaagtttatt tacccaagca aatctttgtt
    11941 tttcatcggc aaaaaatcct tttttaaaag gattgataaa agtaggcaca ataatgagtt
    12001 tatcgatatc aagttttgcc aaagcttctt tgataatagc gtcatgtcct ttgtgtggtg
    12061 ggtcaaaact gccaccaaaa agtgcaattt tcattaaaat tttaaccttt ttttagtaaa
    12121 atattagcat aaaaaacttc gcaaaaggaa acaaaatggc cgtaaaagtt gctataaatg
    12181 gttttggtcg cataggaagg tgtgtagcaa gaattatttc aaaacgagat gatatcgaac
    12241 ttgtagcgat aaatgatact acagatatcg aacttacaaa atatcttttt aaatatgaca
    12301 cagtgcatgg agaatttgaa ggcagtgtgg aaaatgaagg ggatgattta attatcaatg
    12361 gtaaaaaaat caaagtgttt aaaagccgcg atataaaaga acttgatttt gcaaaatacg
    12421 gtgcacaaat tgttttagag tgcacagggg ctcatttgac aatagaaaaa tgccaaggat
    12481 ttttagatat gggagtgcaa aaagtgatca tgagtgctcc tgcaaaagat gatactccta
    12541 cttatgtttt aggtgtaaat tcacaaaatt ataaaggtga aaatatcatc tctaatgcaa
    12601 gttgtacgac taactgctta ggtcctgttt gtcgtgtttt acaagataat ttcggcatag
    12661 aaaaaggact gatgacaact atacatgctt atactaatgg acaaagcatt atcgatgcaa
    12721 agactaaaga taaacgccgc tcgcgtgctg ctgctcaaaa tatcattcca acttctacag
    12781 gcgcagcaaa agcgatgaag cttgtaatgc ctgaacttaa tggcaagctt cacgggcaaa
    12841 gtatgcgtgt gcccgttatt gatgtttcaa gcgtggattt aaccgctcaa cttagcaaaa
    12901 aagtaagcaa agaggagctt aatgaagcct ttagaaaagc tgcagttaca aatttaaaag
    12961 gcattttaat ggttgatgat gatgaaaggg tatcgagcga ttttatcact tgttcttatg
    13021 gagcggttgt ggtaagtgat ttgacccaag ttatagcaga tgattttgtt aaagttgttg
    13081 cttggtatga caatgagtgg ggatactcaa gccgcctagt agatatggca gtatatattg
    13141 caaataaggc ttaaaaatga gtgatattat ttctataaaa gatattgatc taagcaaaaa
    13201 aaaagttttt ataagatgtg attttaatgt ccctcaagat gattttttaa atatcactga
    13261 tgacagacgc atcagatcgg ctatccctac gataagatat tgtttagata atggttgcag
    13321 tgtgatttta gcttcgcatt tgggtcgccc aaaagagatc agttctaaat attctttaga
    13381 gcctgtagct aagcgtttag caaggctttt agataaagaa attgttatgg caaaagatgt
    13441 tataggagaa gatgcaaaaa gcaaagcagc aaatttaaaa gcaagtgaga ttttaatgct
    13501 tgaaaatttg cgttttgaaa agggcgaaac taaaaatgat gaaaatttag ctaaagaact
    13561 tgcttctatg gccgaggttt atatcaacga tgcttttggg gtatgtcata gagcacacgc
    13621 tagtgtagag gctatcacta aattttttga tgaaaaccat aagggtgcag gatttttact
    13681 acaaaaagag attgaatttg ctgaaaatct tatcaagcgt cctgcacgtc cttttgttgc
    13741 tgttgtgggt ggatcaaaag taagtggcaa gcttcaagct ctaacaaatc tacttccaaa
    13801 agttgataaa ctcatcattg gtggtggtat ggcatttact tttttaaagg cgcaaggttt
    13861 tgatatagga aattcacttt tagaagaaga gcttttagaa gaagccaata aaattcttac
    13921 aaaaggaaag aatttaggtg ttaaaattta cttacctgtg gatgtagttg ctgctcctgc
    13981 ttgctctcaa gaatcaccaa tgaaatttgt accttcgcaa gaaattccaa gtggctggat
    14041 gggtttagat ataggtcctg caagtgtgag actttttaaa gaggttattt ctgatgcaca
    14101 gaccatttgg tggaatggac ctatgggtgt ttttgagatc gataaatttt caaaaggcag
    14161 cataaaaatg agccatgcta tcagcgatgg acatgctact actgttgtag ggggtggcga
    14221 tacggctgat gttgtcgcgc gtgctggaga tgcagatgaa atgactttta tttccacagg
    14281 tgggggcgct tcgcttgagc ttatcgaagg taaagaattg ccaggtgtaa aagtcttaag
    14341 aagtggggga gtgcaatgat atttgctgca aatttaaaat gcaatcatac aagatcaagt
    14401 tttaaaattt atgcaaatat tttaaatcag tatttagaag caaaaaacga tgatatcatc
    14461 gtttttccac ctagtatagc ttttttagaa aatgaattaa attttataca aggggcgcaa
    14521 aatttttatc cttgtgtcaa tggagctttt acaggtgaac ttggaaaaga gcatttggat
    14581 gaatttggaa tcaaatgtgt tttgataggg cattctgaaa gaagggcttt gggtgatgaa
    14641 aatttaatca aagctaaatt tgattttgct aaagagcatg cttataaaat cgttttttgc
    14701 ataggcgagg atttaaagct taaaaactca aatcaaacct tagatttttt aaaaaaacaa
    14761 cttgaagtta ttgacctaga ttataaaaat ctcattatcg cttatgagcc tatttactct
    14821 ataggaagtg gtgtgagtgc taaaaaagaa gatattgcta aagtgcttga atttctttct
    14881 tcgcttacgc aagctccttt gctttatggc ggaagtgtaa atgaggacaa tatcaaagat
    14941 attttaaata taaaacattg cagcggtgtt ttaataggat ctgctgcatt aaaagctgaa
    15001 aattttataa aactaattaa aggataaatg atgataatga aaggcaaaaa aggccttata
    15061 gtaggcgtag ccaataataa atccatagct tatggtatag caaaagcttg ttatgagcaa
    15121 ggagcaagtt tagcttttac ttttttaaat gatgcattaa aaaagcgtgt tgagcctata
    15181 gcagaagaat ttggatcaaa ctttgtttat gagcttgatg taaataacag cgatcattta
    15241 gactctatcg ctgaaaaaat taaaaaagat ttaggtgaga ttgattttat agtacatgct
    15301 gttgcttatg cgccaaaaga agctttagaa aattcattct tagaaacttc aaaagaagct
    15361 tttgatatag ctatgggaac ttctgtgtat tctttacttt ctttaacgcg tgcggtattg
    15421 ccagtattaa aagaaaaggg tgcaattttg actttaagct atcttggcgg ggtaaaatat
    15481 gtgcctcatt ataatgttat gggtgtggca aaagcagctc ttgaaagttc tgtgcgttat
    15541 ttggcaagag atttaggtat caaaggaatt cgtgtaaatg cgatttcggc aggacctatt
    15601 aaaactttag cagcaagtgg aataggcgat tttagaatga tattaaaata caatgaaatc
    15661 aatgctccat taaaacgcaa tgtaagtatt gaagatgtag gaaattcagc gatgtattta
    15721 ctcagtgatt tagctcgtgg tgttacgggt gaggtgcatt atgttgatgc aggatataac
    15781 atcatgggaa tgggagatgt cacaaaagac gaaaatggaa atactgtgct ttgttgggat
    15841 aatcaaaaag gacaataatg gcaaaactca gcaatgaaga gttaaaagat atacttataa
    15901 aacgcattga aaaaatcgaa aattcagact tggtagataa aaaaactatc aatgaagaaa
    15961 gcgtaaaggc tcttgctaag catttatctt tgggaaatga aattccagct cttgcgcaaa
    16021 agtttttcga acttgctcct aagactaagg ttgtttggct tcatctttgc gaatgtacag
    16081 gttgtagtga gagtttattg cgtgcggatt taccaagttt tgatgaatta gtttttgact
    16141 ttttttcttt agagtatcac gaaactttaa tggcagcaaa tgggacaaaa gctgaagaac
    16201 ttttagagca tgttttaaaa gaagactttg ttttagcggt tgaaggcggt gttgcagcta
    16261 ttgatacatt ttttcttact ataggtgcag agggtgagag tggttatgaa attttggaaa
    16321 aattagcagc taaagccaaa gctatttttg ctgtgggaac ttgttcttct tatgggggaa
    16381 ttcaagctgc ttatccaaat ccaagcaaaa cttgcggtat ttctgaagtt ttaacccaaa
    16441 aagtagtcaa tatccctggc tgtcctccaa gcgatgtaaa tatcatcgca accttgactt
    16501 attttgcttt atttggaatt ttacctgaac ttgatgagca aaaccgcccc gtttgggctt
    16561 atggtaaatg tttgcatgat ttgtgcgaaa gaaaggctaa atttgagagt ggaatttttg
    16621 cagaacattt tgatgatgaa aaggctaaaa gtggagcttg tttatttaaa ataggctgta
    16681 aaggtcctta tacttataat aattgtccta aagtaaaatt taatgctaaa acttcttggc
    16741 ctgtggctgc agggcacggc tgtatagcct gtagtgaaaa gaatttttgg gatgaatttg
    16801 gaaattatga aaaacctatg gcaaatcctt tttcttatgc taagcttgta aatcaggaat
    16861 ttagtacaga atttgcccta gaagagcaaa ttcaaatcct atcttcgatg gattttgaat
    16921 ttgaaagtaa tttaaagctt attttgcaaa acattgctaa aaataaatta ggtgctttac
    16981 ttgtagaaaa ttacaaaaca tcttttgaaa aaaactttat ttttatagag caaaattttg
    17041 atgaaaatcc tatgccttct agtgatattt ggaagtattt tgagatcaat tttattttgg
    17101 caaagggtga gtttttacaa gataaaaacg attttttaaa agcggcgcaa aattatagct
    17161 ttaagcatgc aagtccttat gattttaaac ttactcttaa tgaaaaatca aaacttgatg
    17221 tgagtaaatc ttttcgtatg cctttgattt atctttgcgg agggcttgat tttgaagctc
    17281 ttgcttatag cgttttgaag gcttttgaaa aaaatattaa aagcgtgata gactttaata
    17341 aacaaaaagc gggttaattg attacaaatt ttgtaatatt taaccctata aaagccacta
    17401 tataggcgct gatgcaagta aaaagaaaaa ggaaaaaagt atattttatt tttccgcttt
    17461 cttttgaaaa gactatggtt gcagcaaagc aaggattata aatcattaca aataaaatat
    17521 acgccaccgc actaggcaaa ggaatatttt tagcaataat accttttaaa tcactgcttg
    17581 tttcatccac ttcttttcca agagaataaa gcacccccat ggtagaaatc attacttctt
    17641 ttgcggccaa accactgact aaagatacgc ttaatttcca atcaagctca agcggagaaa
    17701 aaataggctc aattgttttg ccaaattgcc ctagataact ttgctcaaca gctctttctt
    17761 gagcgctaaa atcatctaaa ttgctttcat tgtttggaaa attgcttgca aaccatataa
    17821 gtaaggaagc tacaagtata aaggtccctg cttttttaag atacatttta gctttattaa
    17881 agaccataaa ccatactaaa tgccaatttg gcatacgata ttttggcatt tccatcacaa
    17941 agggttcatc aataccgcga aatgcagtgg atcttaagaa tttggccgca ataagcccta
    18001 aaatagcacc tagaagataa attccaaaaa ggtaattccc cgcttcttca cttgggaaaa
    18061 atgcaccgat aaacaataca taaacaggaa gtcttgcccc acaactcata aaattaatca
    18121 caaagagtgt taaaagtcta tctcttttat ttttaagcgt gcgtgtagcc ataaaagcag
    18181 gcacagagca gccaaaacca gtgattagcg gaatgaagct ttttccatgt aaaccaaatt
    18241 tatgtaaaat tccatctagt aagaaagcta ctcttgacat atagcctgtg gtttctaaaa
    18301 gagctatgcc taaaaataaa attattatat taggtaaaaa aagtatcaca gcaccaacac
    18361 ctgcgataat cccatcagct aaagctgaag cgatgaaggt attagaaata ttgtttttaa
    18421 caagttcacc taaggcatta aagcctgatt ctatataatc cataggaatt tgccctaagc
    18481 taaaggtgag ttgaaataaa agccacatta aaaataaaaa tataggtaag ccaaagaatt
    18541 tatggataag taaggcatcg atttttttgg ttaaatttct ttcttctttt ttgtgtgtga
    18601 taattttttt tgaaagttca ttaataaaat ataataaatc ttctttttcc ggactttttt
    18661 cgcaaagcgg agtataaaat tgagatcttg gaataaattt actttcaaat aaaataataa
    18721 ttttttgcag caaaagttct aaattttctt ttgtttttgc tgaaatttca acaacttgac
    18781 tttgaaattc ttggcttaaa acagaagtgt caagctctat accttctttt ttggcttcat
    18841 cgcacatatt taaagctaaa agcatttttt tattaaggct taaaagttct gcactaagga
    18901 taagattacg ttctaaattg gtagcatcta aaacattaac aataacatca tagtcatttt
    18961 gatttaaaaa atggcgtgtg attttttctt cttcactata tccatctaaa gaataagttc
    19021 ctggtaaatc aatgacttca aattcatagt ttttgtaaaa agtttttgca cttgcttttt
    19081 ctatagtaac tccgctaaaa tttcctactt tcatattagc tttgcaaagc gcattaataa
    19141 gaagactttt gcctacatta ggctgaccta caagggctat tttgattttt ttcatataag
    19201 attcacttct atggttttag cttcatcaga tcttaggata acacaacttg tatcaagttc
    19261 taccattatg gtggcatttt ttaaagagga atgaattttt ttcaagtttt tatttttaat
    19321 aaatccaaag cttaaaagtc tatttttgag ttctttgtga gcgtttaaat tgacaataat
    19381 agctttttgt ccatctttta act
//
LOCUS       DBBXRO010000021        19219 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.021, whole genome shotgun sequence.
ACCESSION   DBBXRO010000021 DBBXRO010000000
VERSION     DBBXRO010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19219
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.021"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..757)
                     /locus_tag="ACJFEZ_000546"
     CDS             complement(<1..757)
                     /locus_tag="ACJFEZ_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HGG0916687.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVEDLEKNYKIKAKAYEFNILEPETYKELFEKIDMDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSNKASWVTGHTFIV"
     gene            complement(757..1653)
                     /gene="dapA"
                     /locus_tag="ACJFEZ_000547"
     CDS             complement(757..1653)
                     /gene="dapA"
                     /locus_tag="ACJFEZ_000547"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HGG0916688.1"
                     /translation="MDKNIIIGAMTALITPFKNGKLDEQSYARLIQRQIDNGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVDICKGTKVKVLAGAGSNATHEAVDLAQFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIANSVDIPVLLYNVPGRTGCEICTETIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMILISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SKLTHLALEENYKEAKKINDELYNINKILFCESNPIPIKTAMYIAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            complement(1656..2897)
                     /locus_tag="ACJFEZ_000548"
     CDS             complement(1656..2897)
                     /locus_tag="ACJFEZ_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HGG0916689.1"
                     /translation="MIDYSKITLKNKLDVYTFPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCSKKNLDKTL
                     ELFAELMENLSLKDEEFQPERSVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSTYYQPKNAILIVSGDIDSEEVFSGAKKHFEKIKNTKPI
                     PKIHTKEPKQDGAKRIEIKKPTQTELLAIGFKIPNFKHKDIPALNALAELLGNGKSSM
                     MNEILVDELNLVNEFYSFANDCIDENLFIFICNCNVGVKAEKVEQELWKIIDRLKKGD
                     FSSKDLQKVKNNVKSDFIFSLDTASAVSNTYGSYLARGDLKPLLEYESNIAHLCEQDL
                     VKSAKKYFDRSNSTTLILRKD"
     gene            complement(2894..3952)
                     /locus_tag="ACJFEZ_000549"
     CDS             complement(2894..3952)
                     /locus_tag="ACJFEZ_000549"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HGG0916690.1"
                     /translation="MLYNFIKPLLFKLDPENAHALVEGSLRSLNATLPGSLSFFAYNY
                     IVNDDSLKQKLLGLDFNNPVGLAGGFDKNATMIRPLAALGFGFLEFGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNQGAEKIAARLSKIYPFVLPLGANIGKNKITSNDKALE
                     DYFTLFRNFKDLCDYFIVNISSPNTKNLRELQNDDFLSHLLEEARKITNKPILIKIAP
                     DMPIDSALKLCENAILKGADGFIIANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     LAKVLFGKTLLIASGGIDSGELAYERIKNGANLIQVYTALIFKGPSLVRDINKTLIEL
                     LKQDGFMHISEAVGANLK"
     gene            complement(3998..5731)
                     /locus_tag="ACJFEZ_000550"
     CDS             complement(3998..5731)
                     /locus_tag="ACJFEZ_000550"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0916691.1"
                     /translation="MHKDMTLKDVLIRFKPFYKKYKKEFAIAIFGMILTSIGTAGSFA
                     SLKPILDYIFVEKNEALLYTLPFLLVIIYILKNLGFYLQTYYLSFIGMDTLRILRFKV
                     LKNLLKLDMDFFKRNRSGELVSRCTNDINALQSIVSNIIPDFFRELLTIVGLLIVVFY
                     QSPILAFFALVVLPCAILPLVHFARKLKKYARSIQETNSDLLSRLSEIFSNIELIKAS
                     NTQNKESEKFAKQNNELCRLNLKSTRIDALTSPLMEIIGSLGVAAVIIIGGREVIHGT
                     MSVGSFFAFITALFAIYTPLKRLSSLYGRLQGAIAASERTFYLLDLEPQILNGSKNLE
                     SIARIEFKQVDFAYENPYKSVLKDINFEFNKGEILALVGTSGGGKSSIINLLMRFYDK
                     QKGEILLNDLDISEFSIESLHDRIGLVTQNIYLFNDSFAENVAYSEEPNKEKIIKALK
                     LANAYEFVQEMGGIYAEIKEHGKNLSGGQKQRIAIARALYKNPDLLIFDEATSALDNE
                     SEKAIIETIENLKKDRLVLMIAHRLSTIENADKIAVIDQGQMIAIGSNEELLQSCELY
                     QKFKNKEVDKV"
     gene            complement(5732..7114)
                     /gene="cysS"
                     /locus_tag="ACJFEZ_000551"
     CDS             complement(5732..7114)
                     /gene="cysS"
                     /locus_tag="ACJFEZ_000551"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HGG0916692.1"
                     /translation="MKLMDSVLKEKIELDQDNVNIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLSLGYRVQFARNYTDIDDKILKKMSESGKSLNELVEFYIANYERDMKALNVL
                     EPDFKPRATYYIEPMLDLIHKLSKNGFTYTLEDGVYFDTSKDEDYLSLSHRNTEENVS
                     RLSNEVEKRNESDFVLWKFDENFYDSEFGKGRPGWHTECVAMIDSIFGDTLDIHAGGV
                     DLLFPHHENEAAQCRCACKRTLAKIWLHNGFVKINGDKMSKSLNNSFFLKDALKDFMG
                     EALRFYLLSSHYRAHFNYSLDDLENVKKRLDKFYRLKKRLAVGKTPDFGILNDIEIHS
                     NIAKQILEVLSDDLNISKALALLDEFITNANLELDQQSKNKELKQKIKEALSELAKIF
                     GFGFMDENLYFQWGVAKELKEKIQDQILQRNEAKKNKDFAKADQIREDLLKLGIALQD
                     TPQGTIWEKI"
     gene            complement(7114..8565)
                     /gene="murJ"
                     /locus_tag="ACJFEZ_000552"
     CDS             complement(7114..8565)
                     /gene="murJ"
                     /locus_tag="ACJFEZ_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HGG0916693.1"
                     /translation="MKSLVFKNFIINALGILFSRVLGLARDVLIALFLGAGIYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMYQFSVIVFLFCLLVSFFS
                     SFFTKLFAFGFSSDTIALASPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKDAPQDTLYYFSYATVLSGVAQLILHLMVLRKNPVIRAMALSVKF
                     RRAKAKLEGFYSNFFHGVLGSSATQISSLLDTTIASFLMTGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALSFMQRALAVLSILLIVSSIVGSVFALEISKL
                     LFERGNFTHEDSIITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAFIAFKALLI
                     SALCSVLFIFLIKDESLKVIAVALSSSLSAFYLLIANIKEFGFKNFFALISFKFCFLM
                     ITGLVVFTILLYEIKPYLIEALLWIVASVKGVF"
     gene            8669..10534
                     /locus_tag="ACJFEZ_000553"
     CDS             8669..10534
                     /locus_tag="ACJFEZ_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HGG0916694.1"
                     /translation="MALDEKIISYTENPSRELLSVASRTNIALNELDFHLLAFSTQYC
                     LENTEWIKIAEKDLTLFEKDEVFLKEDLQIKQEYKIEIFHQTRQDKTANAIKLIANKN
                     LTKIVAQINFNELKYHEKLAFELLQIIYKKMLKLKFLIGIRIFDFKKELIRICNEHKK
                     NTLNKTLQINVAKGVEPIQSQDEALVLLYKEKAKDYTIDEKRSGIIAVDENEVVLRYN
                     KFKQGKEGKDLNLHTLKVIDANQNKIKFNCSSLAFKTVEYEDYTEYLALKKGYVVEDQ
                     DKFDIANLLEFNNKVDFKNIGIIRAGLDKNVKINIKFISDMQDAVNSGVGIECEELNI
                     TGSVGSNTNLKATRMRVEGTTHTKSKIYAKEAYIKTHRGFAQADKLNIDLLEGGNIKA
                     KEVRIKKSLGGVIEADRIYIEQLESNNSCVFYNNVVIERFEGENNKFHTKIKKMDKDY
                     DQELLKIKNEISSLHHKISKLKQYILSNKNNVLDIEKKVLELKNQGQNIPSQYEKFLK
                     NFSIQNANLNKLQNQEKELLEYRKKIHDELLALEEDLFKAKFINKSGKWSDMNEIRFS
                     LLEPKEDIFYSSSTKESAKFIALKKIIQNNQEYIEIDKKLDYEEKDIEWLLPSKE"
     gene            10510..11061
                     /gene="ruvA"
                     /locus_tag="ACJFEZ_000554"
     CDS             10510..11061
                     /gene="ruvA"
                     /locus_tag="ACJFEZ_000554"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HGG0916695.1"
                     /translation="MVVAIEGIITKKEPTFAIIKCASGLSYGVFISLFCAAKLETHQK
                     YELFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSLDVNSFYKAL
                     NLGDESVLKKVPGIGPKSAKRIIVELGDAKVQLESVSDDKSEALAALLSLGFKQDKIL
                     SVLSTCNGKDTSELIKEALKKLA"
     gene            11071..12111
                     /locus_tag="ACJFEZ_000555"
     CDS             11071..12111
                     /locus_tag="ACJFEZ_000555"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HGG0916696.1"
                     /translation="MKLAILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFY
                     LIPSEKMNSKTFSGGAYQKEKELFLRQKAFYHKSLWSEKNLNLDCVINLIHGRDGEDG
                     KIASLLEFFDIKFIGPRVEASVLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQDFTAH
                     FPCILKPARLGSSIGISIAKNEKELDYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMI
                     KDEFIFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKQKLKDNFAKIYNPLF
                     KGALIRCDFFILDNEVYLNEINPNPGSLANYLFKDFNKIIEQLALSIESEKKIKITYE
                     FLHSINGQKGKL"
     gene            12171..12386
                     /locus_tag="ACJFEZ_000556"
     CDS             12171..12386
                     /locus_tag="ACJFEZ_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HGG0916697.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPLIEKLKKSESGKMVILKNNKFEA
                     VLLSMKEFERLQNAMQLLENIYKNQKV"
     gene            12388..13119
                     /locus_tag="ACJFEZ_000557"
     CDS             12388..13119
                     /locus_tag="ACJFEZ_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HGG0916698.1"
                     /translation="MALVNVIYNNDTYELSYEILNQDKKKSLLILHGWGANKELMKQA
                     FSKNLNDFCQIYLDLPGFGNSSAPKSLYSQDYVNIIKEFLKEKKLDIDIFLGHSFGGK
                     IAALLVLDFQKAQLVLLSNSGILAKKSFKVRFKIMLFKFLKKLGLGRFYRYFASKDGA
                     NLNSLMYQTFKNVVDEDLSQTFAKIDNKSLIFWGIDDKATPLKSGEAMHKLIKNSEFY
                     PLEGDHFFFLKHSLFIANKIKENQC"
     gene            13113..14540
                     /locus_tag="ACJFEZ_000558"
     CDS             13113..14540
                     /locus_tag="ACJFEZ_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HGG0916699.1"
                     /translation="MLTNTLYFINSLFFNFCVAFYLMSALQWYSYKFKRVFFHYHRPL
                     WHLYFLFLPYFFFLTFPLYSLAYFALIHTPILYFWNKSIDKKLVFTSKVKWFFVFVFI
                     YNTLFAILALRFSFLFNLFALPFALISLKIFELFSNLYFKNKAKAKLQNNPQLKIILI
                     TASFGKTSIKNFLYELLKDDFKTYKTPRSVNTLLGIIADINTNLSDDTQIYIAEAGAR
                     VKGDIDVITRFLEPQICIVGEIGNAHLEYFKNIENTRKTKLEALNSKRLEKAFLHTST
                     QKSEDELILLYDDKLQDIQASLQGLEFKINLENKTYEFKSQILGDFNAQNLCACILCA
                     NYLGVKIEKIQKQVLKINSVEHRLQIISKEPKFIIDDGFNGNYKGMSASYKLCKNYKG
                     RKVLVSPGIVEVDKDENVKLAKIINECFDLAVITAQVNADIFKKELKIKTIILKEKAD
                     LVKVLAKETQQGDLILFSNDAPSFM"
     gene            14689..18198
                     /locus_tag="ACJFEZ_000559"
     CDS             14689..18198
                     /locus_tag="ACJFEZ_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HGG0916700.1"
                     /translation="MQKNSFLKIYGLIPFLLVAFINAFVDLGHKIIIQNTIYKVYEGS
                     TQLLLTAIVNALILLPFILMLSPSGFLADKYPKNLIMKLSAAFSVMLTIIICISYYNG
                     AFWTAFTLTFIMGIQAALYSPSKYGFIKELVGKDLLAMGNGAVNAVSIVAILAGMSLF
                     SLSFESLYDINHNSSEEVLKQVAPLGFLLILFSLIELYLAWRLPKLKDEIKELKFDSK
                     RYLSGKLLMSNLKLIFENKVIWLCIVGISIFWAISQLYLISFPVFSKNELFIENTFFV
                     QVSLGFSGIGVVLGSLIAGRFSKNYIELGLIPFGALGVFLMALIMPYFTSLITYSFIF
                     FIFGFCGALFIIPLNSLIQFHAKENELGKILAGNNFIQNIAMLTFLVLATLFANLEIN
                     VIYLFYFITLVAFLGAIYVVFKLPFSLVRMLLSIAFLGRYRLLVEGFKNIPEKGGALL
                     LGNHISFIDWAIVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGVIPVSSAASKASLEL
                     IAERIKQGDLVCLFPEGVLSRHGQLNEFKGGFEHVCSNLEEDDGVILPFYIRGLWGST
                     FSRSDEEFSARNRTLSKRNIAIAFGAPMSLHSKKEEVKAKVFELSFMAWKSQCEAMHT
                     IARAFITSAKRNLSNIAIIDSLAGAISYRKLLSLSFILSTLIKENSKKINSNFERGSY
                     APKEECVGILLPASFASSLLNLSVLLAQKVVVNLNFTAGEKALQAAVKSAQISQIYTS
                     KKFLEKLESKGVSLNFGEEVNLIYMEDVVEIFKKQKSKILAMMMAVSILPSFILKAIF
                     APSKNNLAIAAILFSSGSEGTPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLESIKSITFADPTDALGIAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDAIMFESLRVVVSGAEKLKSEVRSAFEMKFKKSIFEGYGATETTPVASVNLPNRFDA
                     DYWIVHRASKEGSVGMPLPGTAVRIVDPNTYETLKTNEDGLILIGGHQVMVGYLNNKE
                     KTDEVIKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGALEEEIAKF
                     IDTNIVKFCTVALEDEKKGEQVALLIECDEEFFEGVCEAIKSSSMPAIFKPSRYLKVE
                     KIPLLGSGKVDLKGAKELAKSLV"
     gene            complement(18277..19188)
                     /locus_tag="ACJFEZ_000560"
     CDS             complement(18277..19188)
                     /locus_tag="ACJFEZ_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HGG0916701.1"
                     /translation="MFIFSPLFTIFILLAGGYFAKRVGILKQKQARTFLDFAIVFALP
                     CLIFDKAYHLNFDFSLIVLIFIGFFSCALAAFIVVFLGFIFNFSKATLVSMFLLSCFG
                     NTIFVGMPIVEGIFANAQFGAEVILYDALATTLPISLLGPFILSLGSGEKVSLVANIK
                     KILSFPPFLALLLGFLCKLISLPEFIFSPIRLFGGAATPVALFAIGLGLGFMAIKTAY
                     KPTILVILAKMVLAPLIFVLLLKLFGFEMKASIIVAIIESATPTMTLAGAMVMKAKLD
                     SNLAVSTVAFGVLFAFISMPILVWALA"
BASE COUNT         6835 a         3221 c         2868 g         6295 t
ORIGIN      
        1 ctacgatgaa agtatgtcct gttacccagc ttgctttatt tgagcaaaga aaaagacaag
       61 caccagctag atcttcaggc tgtcccatac gatttaaagg acttaaattt atagttgctt
      121 gtttaacctc ttcataattt gtaaaagctc ttaaagcatc tgtttcaatc ggcccaccgc
      181 tgactacatt tacacggata tttttttctc caagctctgt tgctgcatat cttgccattg
      241 cttcaaccgc agcttttgct gtgccgtgtc ctgagtaatt ttctatataa accaaatttc
      301 cagtagaaga aattgaaata atacttccac cccctacttt ttccattctc ttagctgctt
      361 cttgagctcc tacaacaaaa gcatttacag tagcggtaaa gatattgtta attccttttg
      421 gttttaactt cataaattta gtataaccac ccacaactgc acgacctgaa ataatggcat
      481 ttgaaataaa ataatccact ctatcaaaat ccatatcaat tttttcaaaa agctctttat
      541 aggtttcagg ttctaaaata ttaaattcat aagcttttgc tttgatctta taattttttt
      601 ctaaatcctc aaccatttca tcagcaattt gcgcattaga attataagta aaagctatat
      661 ttgcacccac tttagcaaat tcataaacta tagctttgcc tatcccgcga gttccaccgc
      721 taatcactaa agtttttcct tgaaattctg tattcattaa aatcctttga tcttatattt
      781 tttcatcact tcttcaattt tagcaaaatt ttccttactt ggagaacaaa gaggaagtct
      841 aaattccaaa ctttcaataa gtcctgctat atacatggca gtttttatag ggatgggatt
      901 gctctcgcaa aataaaattt tattgatatt ataaagctca tcattaatct ttttagcttc
      961 tttataattt tcttccaaag ccaaatgagt aagcttgcta atcatatcag gcaacaaatt
     1021 tgaagtaact gaaatcaccc ctttgccccc attagaaagt ataggataat tgatcgcatc
     1081 ttcacctgaa atcaatatca tccttggttc atgcgcaagc aaatcaacgc atttgtctat
     1141 atttccgctt gcttccttaa ccccatagat attttcacaa tctctaaata atttaataat
     1201 agtctcagtg caaatttcac agcctgttct tccagggaca ttgtataaaa gcacaggaat
     1261 atccacacta tttgcgatcg ctttataatg ctcataaagt ccttgctgtg ttggtttgtt
     1321 ataataagga gccacactta aaattccatc tgctccatgc tctttggcaa attgagccaa
     1381 atccacagct tcatgggtag cattacttcc agcacccgct agaactttaa ccttagttcc
     1441 tttacaaata tctactgcaa tttcaataca agttctatgt tcttcatggg ttaaagtcgc
     1501 gctctctcct gttgtcccaa caggaactac cgcatcgatg ccattatcaa tttgtctttg
     1561 tatcaatctt gcataacttt gctcatctaa cttgccattt ttaaaaggtg taatcaaagc
     1621 tgtcattgct ccgataatga tatttttatc catttttaat cctttcttaa aatcaatgta
     1681 gtcgaatttg atctatcaaa atatttttta gcgcttttaa ccaaatcttg ctcgcacaaa
     1741 tgggctatat tgctttcata ttctaaaaga ggttttaaat cccctctagc caaataagaa
     1801 ccataagtat ttgaaaccgc acttgctgta tcgagtgaaa agataaaatc actcttgaca
     1861 ttatttttta ctttttgcaa atccttgctc gaaaaatcgc cctttttaag tctatctatg
     1921 atcttccaaa gctcttgttc tactttttct gcttttacgc ccacattgca attacaaata
     1981 aaaataaaca aattctcatc tatacaatca tttgcaaaag aataaaactc attgactaaa
     2041 tttaattcat cgactaaaat ttcattcatc atagaacttt ttccatttcc taaaagttct
     2101 gctaaggcat ttaaagcagg tatatcctta tgtttaaaat taggaatttt aaaacctatg
     2161 gcaagaagtt cggtttgagt tggtttttta atctctatcc ttttagctcc atcttgttta
     2221 ggctctttgg tatgaatttt tggaataggt ttagtgtttt tgattttttc aaaatgtttt
     2281 ttggctccac taaaaacctc ttcgctatca atatccccac ttactatcaa aatagcattt
     2341 ttaggctgat aataagtact atgaaattct ttaatatctt ctatgctcca attttctata
     2401 tccttaaaaa agcctatagg ggtccaatga taaggatgat acataaaagc gtgattaaaa
     2461 agtctaaagt acaaataccc taaaggatta ttatccgttc tccatctacg ctcttctaag
     2521 accacacttc tttcgggttg aaattcctca tctttaaggc ttaaattttc cataagctcc
     2581 gcaaaaagct ctaaggtttt gtctaaattt ttcttagaac atttgatata ataatgagta
     2641 taatcaaaac ccgtgctggc gttatcaacc ccgccaaagc ccttaactat ctcatcaaat
     2701 tcccctgctt ttaaattttt agtgctttta aaatttaaat gttcaagcat atgagctata
     2761 ccgctttttc ccatgatctc atttcttgaa cccactttat aaaaaatatc tacactgata
     2821 acatcgctgt ttttatttac aggaaaagta taaacatcta gtttattttt tagtgtaatt
     2881 ttactatagt ctatcatttt aaatttgctc ccaccgcttc gctaatatgc ataaaaccat
     2941 cttgttttaa taattctata agagttttat taatatctct taccaatgaa ggccccttaa
     3001 aaatcaatgc tgtataaact tgtattaaat tagctccatt tttgattcgc tcataagcaa
     3061 gctcgccgct gtctatccct ccacttgcaa taagtaaagt ttttccaaat aaaaccttag
     3121 caagctcttt aaagaaaata ccgctttttt cagtgatgag ccttccgctt atgccgccaa
     3181 aagttctgtt attatcaaga agagaataat ctacacttgt attggctatg ataaaaccat
     3241 ctgctccttt taagatagca ttttcacaaa gctttaaagc gctatctata ggcatatcag
     3301 gagcgatttt tatcaaaata ggtttgttag tgatttttct agcttcttca agaagatgac
     3361 ttaaaaaatc atcattttga agttctctta aatttttagt attaggtgaa gaaatattga
     3421 cgataaaata atcacacaaa tctttaaaat ttctaaataa agtaaaataa tcctccaaag
     3481 ctttatcatt gcttgtgatc ttattttttc ctatgtttgc tcccaaaggc aaaacaaaag
     3541 gataaatttt tgataatctt gcggcgattt tttctgctcc ttgattatta aaacccattg
     3601 cattttgtat gctttcttgt tttacaaggc gaaataaacg cggtttttca tttccctctt
     3661 gaggctttgg agtaaaggtt ccaaactcta aaaaaccaaa accaagagcc gctaaagggc
     3721 gtatcatggt ggcattttta tcaaatcctc ctgctaaacc cacaggatta ttaaaatcaa
     3781 gtcctagtaa tttttgtttc aagctatcat catttacaat ataattataa gcaaaaaagc
     3841 tcaaagagcc tggcaaagtg gcatttaagg accttaaact gccctccact aaggcatgag
     3901 cattttcagg atcaagctta aaaagtaagg gttttataaa attataaagc atattattcc
     3961 tcgttttttt aaaattttaa ctaaatttaa cttaaaacta gactttatct acttctttgt
     4021 ttttaaattt ctgataaagt tcgcaacttt gcaaaagctc ttcattgctt cctatagcaa
     4081 tcatttgccc ctgatcaatc actgcgatct tgtctgcatt ttctatagtg cttaaacgat
     4141 gggcaatcat taaaacaagt ctatcttttt ttaaattttc tatagtctcg atgatggctt
     4201 tttcactttc attatcaaga gctgaagttg cttcatcaaa aataagcaaa tcaggatttt
     4261 tatacaaggc tctagctatg gcaatgcgtt gtttttgacc cccgcttaaa tttttaccat
     4321 gctcttttat ctctgcataa attcctccca tttcttggac aaattcataa gcattggcta
     4381 gttttaaagc tttgataatc ttttctttat taggctcttc gctgtaggct acattttcag
     4441 caaagctgtc gttaaaaaga taaatatttt gtgttacaag gcctattcta tcatgcaagc
     4501 tttctatgct aaattcactg atatctagat catttaataa aatctcaccc ttttgcttat
     4561 cataaaaacg cattaaaaga ttgatgatag atgattttcc acccccgctt gttccaacaa
     4621 gtgcaagaat ttcacccttg ttaaattcaa aattaatatc ttttaaaaca ctcttataag
     4681 gattttcata agcaaaatct acttgtttaa attcaatcct tgctatactt tctaagtttt
     4741 tacttccatt tagaatttgt ggctctaaat caagcaaata aaaagtcctc tcgcttgctg
     4801 ctattgcgcc ttgtagtcta ccataaagcg aagataatct ttttaagggt gtataaatag
     4861 caaaaagtgc tgtaataaaa gcaaaaaaac tacccacgct catcgtacca tggatcactt
     4921 ctcttcctcc gatgataatt accgcagcca ctccaagcga tccaataatc tccataagtg
     4981 gactagttag agcatcaatg cgagtggatt ttaaattcaa acgacaaagc tcgttgtttt
     5041 gtttggcaaa tttttcgctt tctttgtttt gagtattgct cgccttaata agctcaatat
     5101 ttgaaaaaat ttcactcagt cttgaaagca aatcagaatt tgtttcttgt atacttctag
     5161 cgtatttttt taattttcta gcaaaatgca ccaagggcaa aatcgcacaa ggtaaaacta
     5221 ctagagcaaa aaaagccaaa ataggacttt gataaaatac cactatcaat aaacccacaa
     5281 tggttaaaag ctctctaaaa aaatcaggaa tgatattaga aactatgctt tgaagagcgt
     5341 taatatcatt agtgcaacga cttactagct ctccgcttct gttgcgttta aaaaaatcca
     5401 tatcaagctt taaaagattt tttaaaacct taaaacgcaa aattcttaaa gtatccattc
     5461 ctataaaact taaataataa gtttgtaaat aaaaacccaa attctttaaa atataaataa
     5521 taacaagtag aaaaggtaag gtatagagca aggcctcatt tttttcaaca aaaatataat
     5581 ctaaaatagg ctttaaagat gcgaaacttc cagctgttcc tatactagta agtatcatcc
     5641 caaaaatagc aatggcaaat tctttcttgt attttttata aaaaggctta aaacggatta
     5701 aaacatcttt aagagtcata tctttatgca tttaaatttt ctcccaaatc gttccttgcg
     5761 gcgtatcttg caaagcaata ccaagcttga gcaagtcttc tctgatctga tctgctttgg
     5821 caaaatcttt atttttctta gcttcgtttc tttgcaaaat ttgatcttga attttttctt
     5881 tcaactcttt ggcgacaccc cattgaaaat ataaattttc atccataaaa ccaaagccaa
     5941 aaattttagc cagttcgctt aaagcttctt tgattttttg ttttaattct ttatttttac
     6001 tttgctgatc aagctctaaa tttgcattag ttataaactc atctaaaagc gccaaagcct
     6061 tagagatatt taaatcatca cttaaaactt ctaagatttg cttggcgata ttgctatgaa
     6121 tctctatatc atttaaaatt ccaaaatctg gggtttttcc cacagcaagt ctttttttaa
     6181 gacgataaaa cttatccaag cgttttttta cattttctaa atcatctaaa gaataattaa
     6241 aatgagctct ataatgagaa cttaaaagat aaaatcttaa agcctctccc ataaaatctt
     6301 tgagtgcatc ttttaagaaa aagctattgt ttaaactttt gctcatcttg tctccattga
     6361 tttttacaaa gccattgtga agccaaattt ttgccaaagt tcttttgcac gcacaacgac
     6421 attgtgctgc ctcattttca tgatgaggaa ataacaaatc cactccacct gcatgtatat
     6481 caagagtatc gccaaaaata gaatcaatca tagccacaca ttcagtatgc caacctggtc
     6541 gcccttttcc aaattcacta tcataaaaat tttcatcgaa tttccaaaga acaaaatcac
     6601 tctcatttct tttttcaact tcattactca gtcttgaaac attttcttct gtgttacgat
     6661 gagataagct tagataatcc tcatctttgc tagtatcaaa atacactcca tcttctaaag
     6721 tataagtaaa gccattttta ctaagcttat ggataagatc taacataggt tctatataat
     6781 atgtcgcacg aggtttaaaa tcaggctcta aaacatttaa agctttcata tctctttcgt
     6841 aatttgctat ataaaactca acaagctcat ttaagctctt accgctttca ctcatttttt
     6901 ttaaaatttt atcgtctata tctgtataat ttctagcaaa ttgcacccta tagcccaaag
     6961 aaagtaaaac tctacgcaac aaatcaaaac aaacactgct tctagcatga cccaaatgcg
     7021 catcatcata cacagtaggt ccacataaat aaatattgac attatcttga tcaagttcga
     7081 ttttttcttt taaaacgcta tccattaatt tcatcaaaac actcctttaa cactagcaac
     7141 gatccacaac aaagcctcta taagataagg cttgatctca taaagcaaaa ttgtaaaaac
     7201 aacaagtcct gtaatcatta aaaaacaaaa tttaaaagat attaaagcaa aaaagttctt
     7261 aaaaccaaat tctttgatat tggcaataag caaataaaaa gcacttaaag agcttgaaag
     7321 cgccacagct ataaccttta aactctcatc tttgattaaa aaaataaaaa gcacagagca
     7381 taaagcacta ataagcaaag ctttaaaggc gataaaagcg gctgtttttt gtttgaattt
     7441 agcataaagc cataaagaaa ataatttttg taagccaaaa ggcaaaagcc ctatcaaata
     7501 agcgattaaa acataagctg tgataatact atcttcgtga gtaaaattcc ctctttcaaa
     7561 taaaagcttt gaaatttcta aagcaaatac agaacctaca atacttgaaa caatcaacaa
     7621 aatacttaaa accgctaaag ctctttgcat aaaacttaag gctaaatttt cttgatcgct
     7681 ttttaaatgc tttaaaattt taggaaaaga aacttgagtt aaggctatag caaaaagagc
     7741 taaaggaagc tgaaaaacgc ggtttgcata ataaagataa gaaatactac ccgtcattaa
     7801 aaaactcgct attgtcgtat caagcaaaga gcttatttgt gtagcagaag agcctaaaac
     7861 tccatgaaaa aaattgctat aaaaaccctc tagtttagcc tttgctcgtc taaatttcac
     7921 acttaatgcc atagcgcgta tcacaggatt ttttcgcaac accattaaat gcaaaatcaa
     7981 ttgtgccaca ccgcttaata cagtcgcata agaaaaataa taaagcgtat cttgaggagc
     8041 atctttatca acaaaaaatg cggctataac tatacttaga ttaaacaaag ctgccgaaaa
     8101 agaagtgatg aaaaattttt gtctataatt taaaatcgct cctaaaaagg taaccaaaaa
     8161 aataaaaaac aaataccaaa aattaatcgc caccaaagga gaggctaaag ctatagtatc
     8221 ggaactaaac ccaaaagcaa aaagcttggt aaaaaatgaa gaaaaaaagc ttactaaaag
     8281 acaaaataaa aacactataa cactaaattg atacatcaca ctcacgcaaa aagcgccttt
     8341 tttctttgct ttgacaaagt taggtaaaaa gctttgccca aacgcccctt cagcgaaaat
     8401 tcttctaaaa aaggcaggca tttttaatgc tacaaaaaaa atatcactat aaattccagc
     8461 ccccaaaaaa agagcgatta aaacatcacg cgctagaccc aaaacgcgag aaaataaaat
     8521 tcctaaagca ttgataataa aatttttaaa cactaaactc ttcataaatt ttcacaaaat
     8581 ttcaaatata aaagctatca ttttaactaa atttgattaa aaattgacta taatattgaa
     8641 tttaaattaa acaataaagg ggaaagtttt ggctttagat gagaaaatca tttcctatac
     8701 cgaaaatcct tctcgcgaac ttttatctgt agcttcaaga actaatatcg ctttaaatga
     8761 acttgatttt catcttttag ctttttcgac acaatattgt cttgaaaata ccgaatggat
     8821 aaaaatcgct gaaaaagatc tcactctttt tgaaaaagat gaagtatttt taaaagagga
     8881 tttgcaaatc aaacaagagt acaaaatcga aatttttcat caaacacgcc aagataaaac
     8941 cgcaaatgct atcaagctga ttgctaataa aaatttaaca aaaattgtcg ctcaaatcaa
     9001 ttttaatgag ttaaaatatc atgaaaaatt agcttttgaa cttttgcaaa ttatctacaa
     9061 aaaaatgtta aagcttaaat ttttaatagg cattcgtatc tttgatttta aaaaagaact
     9121 catccgtata tgcaatgaac acaagaaaaa tactttaaat aaaaccttgc aaatcaatgt
     9181 agccaaaggt gttgaaccta tacaaagcca agatgaagcc ttagttttgc tttataaaga
     9241 aaaggctaaa gattatacta tagatgaaaa acgctcgggt attatagcag ttgatgaaaa
     9301 tgaagttgta ttaagatata acaaattcaa gcaaggcaaa gaaggaaaag acttaaattt
     9361 acatacttta aaagttatag atgctaatca aaacaaaatc aaatttaact gctcctcatt
     9421 agcatttaag actgtagaat acgaagatta cacagaatat ttggcactaa aaaagggtta
     9481 tgtagttgaa gatcaagata aatttgatat tgcaaacttg cttgaattta ataataaagt
     9541 tgattttaaa aatataggca taatccgcgc aggattggat aaaaatgtaa aaataaatat
     9601 caaatttata tccgatatgc aagatgctgt taattcaggt gtaggaatag aatgcgaaga
     9661 actcaatatc acaggaagcg ttggaagcaa tacaaattta aaagctacaa gaatgagagt
     9721 tgaaggcacc acgcacacaa aatctaaaat ttatgccaaa gaagcctata taaaaacaca
     9781 tcgcggtttt gctcaagcag acaaactaaa catagatctc ttagagggtg gcaatataaa
     9841 agccaaggaa gtaaggatta aaaaaagctt aggtggagtg atagaagcag atagaattta
     9901 tatagaacaa ttagaaagca ataattcatg tgtgttttac aataatgttg tcatagaacg
     9961 ctttgaaggt gaaaataata aatttcatac taaaataaaa aaaatggata aagactacga
    10021 tcaagaactt ttaaaaataa agaatgaaat ttcatctctt catcataaaa taagcaaact
    10081 caaacaatac attctatcaa acaaaaacaa tgttttagat atagaaaaaa aagtcttaga
    10141 gcttaaaaat caaggacaaa atataccaag ccaatatgaa aaatttttaa aaaatttctc
    10201 tatacaaaat gcaaacttaa ataaacttca aaaccaagaa aaagaacttt tagaatatag
    10261 aaaaaaaatc cacgatgagc ttttagcact agaagaggat ttatttaaag ctaaatttat
    10321 caacaaaagt ggaaaatgga gcgatatgaa tgaaatcaga ttttcgcttt tagaacctaa
    10381 agaagatatt ttttattctt cttccactaa agaaagtgca aaatttatag ctttgaaaaa
    10441 aatcatacaa aataatcaag aatatataga gattgataaa aaacttgact atgaagaaaa
    10501 ggatatagaa tggttgttgc catcgaagga ataatcacaa aaaaagaacc cacttttgct
    10561 atcataaaat gcgctagtgg tttaagctat ggggttttta tctcactttt ttgtgctgct
    10621 aagcttgaaa ctcatcaaaa atacgagctt ttcatcactc aaatcatcaa agaggattct
    10681 aataaattct atggtttttt agataaagat gagcaaaaaa tgtttgaaat gcttttaaaa
    10741 gtaaatggag tgggcgcaag cactgcgatg gctatatgct caagtttgga tgtaaattct
    10801 ttttataagg ctttaaattt gggagatgag agtgtgctta aaaaagttcc aggcattggt
    10861 ccaaaaagcg ccaaacgcat catcgtagaa cttggagatg ccaaagtcca actcgaaagc
    10921 gtgagcgatg ataaaagcga agccttggct gctttgcttt ctttgggatt taaacaagat
    10981 aaaatattaa gcgttttaag tacttgcaac ggaaaagata caagcgaact tatcaaagaa
    11041 gcactaaaaa aactagcata aggaaaaata atgaaattag cgatactttt tggcggaaat
    11101 tcttacgaac atgaaatcag cattgtaagt gctgtggtat taaaaaaagt gataaatacg
    11161 gatttgacat ttattttttg cgatgaaaaa aggagatttt atttaattcc tagcgaaaaa
    11221 atgaattcta aaacctttag cggtggtgct taccaaaaag aaaaggagtt atttttaaga
    11281 caaaaggctt tttatcataa aagtctatgg agtgaaaaaa acttaaattt agattgtgtg
    11341 atcaacctca tccacggaag agatggagaa gacggaaaga tagcttcttt gcttgaattt
    11401 tttgatatca aattcatagg tcctagggtt gaagcaagtg ttttatcttt caataaagag
    11461 ttcacaaaac tttacgcaca aagcgttggg gttaaaactc tagattatca aatgcttaga
    11521 aaaagtcaaa agcaagattt tacagctcat tttccttgca ttttaaagcc tgcacgactt
    11581 gggagcagta tagggatcag catagctaaa aatgaaaagg aattggatta tgctaaggat
    11641 gtgggttttg agtttgatac tgatattttg gtagaggatt ttaaaagtaa catcaaagag
    11701 tacaatcttg caggatgtat gatcaaagat gaatttatct tttcaatcat cgaagaacca
    11761 aagaaaaaag aatttttgga ttttgagcaa aaatatctta gtttttcagg ccataacgaa
    11821 cttatcgaag ctgatttgag cgaagaatta aagcaaaagc ttaaagataa ttttgccaaa
    11881 atttataatc ctttatttaa aggtgcttta atccgttgtg attttttcat cctagataat
    11941 gaagtttatc tgaatgaaat caatccaaat ccaggctctt tagcaaatta tcttttcaaa
    12001 gattttaaca aaattataga gcaacttgct ctaagtatag aaagcgaaaa gaagattaaa
    12061 atcacttatg aatttttaca ttctattaat ggacaaaaag gcaaattata aagctttaag
    12121 agaaagtatg ttaaatttta cataaaattt tatgtatttt aggaaaattt atgctttctt
    12181 ttaaacaaga tgaaatctat accgccacag aagttgtgcg aaactttagc cctttgatcg
    12241 aaaaactaaa aaaaagcgaa tcgggcaaaa tggtcatctt aaaaaataat aaatttgagg
    12301 ccgttttgct cagtatgaaa gaatttgaac gcttgcaaaa tgctatgcaa ctcttagaaa
    12361 atatttacaa aaaccaaaag gtttaagatg gcgcttgtaa atgtgattta taataatgat
    12421 acttatgaat taagttatga aattttaaat caagataaga aaaaatcttt actcatattg
    12481 catggatggg gtgcaaataa ggagcttatg aagcaagctt tttctaaaaa tttaaatgat
    12541 ttttgtcaaa tttatctaga tttacctggt tttggaaatt caagtgcgcc aaaaagtctt
    12601 tatagtcaag attatgtaaa tatcataaaa gaatttttaa aagaaaaaaa actagatatt
    12661 gatatttttc taggacattc ttttggtgga aaaatagctg ctttacttgt tttggatttt
    12721 caaaaagctc aacttgtttt gctttcaaat tcaggcatac ttgcaaaaaa atcttttaaa
    12781 gtgcgtttta aaatcatgct gtttaaattt ctaaaaaaat tgggtttggg tagattttat
    12841 cgttattttg caagcaaaga tggagcaaat ttaaactctt tgatgtatca aacttttaaa
    12901 aatgtagtag atgaagatct gagtcaaact tttgctaaaa tcgacaataa aagccttatt
    12961 ttttggggga ttgatgataa agccacccct ttaaaaagcg gagaagcaat gcacaagctt
    13021 atcaaaaata gcgaatttta tcctttagaa ggggatcatt ttttcttttt aaaacattct
    13081 ttatttatag ccaataaaat caaggaaaac caatgctaac caatacactt tattttatca
    13141 attctttgtt ttttaacttt tgtgtagctt tttatcttat gagcgcttta caatggtatt
    13201 cttataaatt taaacgcgta ttttttcact atcatagacc tttgtggcat ttgtattttt
    13261 tatttttacc ttattttttc tttttgactt ttcctttata ttctttggcg tattttgcac
    13321 ttattcatac tccgatttta tatttttgga ataaaagcat agataaaaaa ctcgtcttta
    13381 caagcaaggt taaatggttt tttgtttttg tatttatcta taataccctt tttgccatac
    13441 ttgctttgcg tttttctttt cttttcaatc tttttgccct gccttttgct cttataagtc
    13501 ttaaaatctt tgagctattt agcaatttat attttaaaaa taaagccaaa gcaaaacttc
    13561 aaaacaatcc acaattaaaa atcatactca ttactgcaag ttttggaaaa acaagtatta
    13621 aaaatttcct ctatgagctt ttaaaagatg attttaaaac ctacaaaacc cctcgctctg
    13681 taaataccct acttggcatt atcgcagata tcaatacaaa tttaagcgat gatacacaaa
    13741 tttacatagc agaagcagga gcaagagtaa aaggcgatat tgatgttata acgcgttttt
    13801 tagagcctca aatttgcatt gtaggagaga taggaaatgc gcatttagag tattttaaaa
    13861 atatagaaaa tacgcgaaaa accaaactcg aagctttaaa ttccaaaaga ttagaaaaag
    13921 cttttttaca tactagcacc caaaaaagcg aagatgagct tatcttgctt tacgatgata
    13981 aattacaaga cattcaagca agtcttcaag gtttggaatt taagatcaat ttagaaaata
    14041 aaacatatga atttaaaagc caaattctag gagattttaa tgctcaaaat ctttgcgctt
    14101 gtatactttg tgcaaattat ctaggcgtaa aaatagaaaa aattcaaaag caagttttaa
    14161 aaatcaattc agtagaacat cgcttacaaa tcatctctaa agagcctaaa ttcatcatcg
    14221 atgatggttt taatggaaat tataaaggta tgagtgcaag ctataagctt tgcaaaaact
    14281 ataaagggcg caaggtttta gttagccctg gtatagtaga agtagataag gatgaaaatg
    14341 taaaattagc caaaatcatc aatgaatgct ttgatcttgc cgtcatcaca gcacaggtta
    14401 atgctgatat ctttaaaaaa gaacttaaaa taaaaaccat catactcaaa gaaaaagcag
    14461 atcttgttaa ggttttagca aaagaaaccc aacaaggcga tttgatactt ttttctaatg
    14521 atgcacctag ttttatgtaa gtttatcttg tgaataattt taaagataaa gatatttaag
    14581 aaagatttct aattcttatc ttaaatcatc ttctatttta ttgttagaat tttatgataa
    14641 aatcaatgcc acttttataa agttttcata aatttaggag taaattatat gcaaaaaaat
    14701 tcttttttaa aaatctatgg gctcataccc tttttgcttg tagctttcat caatgctttt
    14761 gtagatttag ggcataaaat catcattcaa aatactattt ataaggttta tgaaggtagc
    14821 acacagcttc ttttaacagc cattgttaat gctcttatcc ttctaccttt tattttaatg
    14881 ctttcaccct caggattttt agcagacaaa tatccaaaaa atcttatcat gaaactctca
    14941 gcagctttta gcgttatgct tacgattatc atttgtataa gctattataa tggggctttt
    15001 tggacagctt ttacacttac tttcatcatg ggaattcaag ctgcacttta ttctcctagc
    15061 aaatacggct ttattaaaga attagtcgga aaagatttac ttgcgatggg aaatggtgca
    15121 gttaatgcag taagcatcgt ggctatacta gctggaatga gtcttttttc tttaagtttt
    15181 gaaagcttat atgatataaa tcataacagc tcagaagagg ttttaaagca agttgcacct
    15241 ttgggatttt tacttatact tttttcactc atagagcttt acttagcgtg gcgtttacct
    15301 aaacttaaag atgagataaa agaattaaaa tttgattcta aacgctattt gagtggaaaa
    15361 ttgttgatga gcaatttaaa acttattttt gaaaataaag taatttggct ttgtatcgtt
    15421 ggaatttcga tattttgggc gatatcgcaa ttatatctta taagttttcc cgtatttagc
    15481 aaaaatgaac tttttattga aaatactttt tttgtacaag tttctttagg attttcaggg
    15541 attggagtcg ttttaggctc tttaatagcg ggtaggtttt ctaaaaatta tatcgagctt
    15601 ggactcattc cttttggggc tttgggcgtg tttttaatgg ccttgattat gccctatttt
    15661 acaagtttga ttacatatag ttttatcttt tttatctttg gtttttgcgg tgcgttattt
    15721 atcatacctt taaattctct tatacaattt catgcaaaag aaaatgaact gggtaaaatt
    15781 ttagcaggca ataacttcat acaaaatatc gccatgctta cttttcttgt tttggcaact
    15841 ttatttgcca atttagaaat caatgtaatt tatttatttt acttcattac acttgttgct
    15901 tttttgggtg cgatttatgt agtctttaaa ctcccttttt ctttagtaag aatgctttta
    15961 agcatagcat ttttaggacg ctatcgtttg cttgtggaag gctttaaaaa tatccctgaa
    16021 aaaggcggcg ccttgctttt gggcaatcat atttctttta tcgattgggc tatagtgcaa
    16081 atggcaattc ctagaaaaat ttattttgtc atggagcgaa gtatttattc taaatggtat
    16141 atcaaaattt ttcttgataa atttggtgtc attcctgttt caagtgcagc aagcaaggct
    16201 agcttagagc ttattgcaga gcgtattaaa caaggggatt tggtttgtct ttttcctgaa
    16261 ggcgtgcttt caagacatgg gcaactcaat gaatttaaag gtggatttga acatgtttgc
    16321 tcaaatttag aagaagatga tggggtgatt ttaccttttt atatacgcgg actttggggt
    16381 agcacttttt caagaagtga tgaggagttt tcagctagaa atcgcacctt aagcaaaaga
    16441 aatatcgcta tagcctttgg tgctcctatg tctttacatt ctaaaaaaga agaggtaaaa
    16501 gctaaagttt ttgaactttc ttttatggct tggaaatctc aatgcgaagc aatgcatacc
    16561 atagcaagag cttttatcac cagcgctaag agaaatctta gtaatatagc tataatcgac
    16621 tctttagcag gagcgattag ctatagaaaa ttattgagtc ttagttttat tttaagcacc
    16681 cttataaaag aaaattcaaa aaaaatcaat agcaattttg aacgcggatc ttatgcgccc
    16741 aaagaagaat gtgtaggaat tttacttcct gcttcttttg ctagttcttt gctaaattta
    16801 agtgtcttgc ttgcacaaaa agttgtagta aatttaaatt ttactgcggg agaaaaagcc
    16861 ttacaagcag cagtaaaaag tgctcaaatt tcacaaattt atacttctaa gaaattctta
    16921 gaaaaattag aaagcaaagg cgtgtcttta aattttggtg aagaagtaaa tcttatctac
    16981 atggaagatg tggttgaaat ctttaaaaaa caaaaaagta aaattttagc aatgatgatg
    17041 gcagttagta ttttacctag ctttatatta aaagcgatct ttgctccttc taaaaacaat
    17101 cttgccatag cagctattct ttttagcagt ggtagcgaag gcactccaaa aggcgtaatg
    17161 ttaaataacc gaaatatcct aagcaatatc gctcaaattt cagatgtgct ttgcacaaga
    17221 aacaacgatg taatactttc atccttgcca ccttttcatg cttttgggct aactgttact
    17281 acatttttac ctttacttga aagtattaaa agcattactt ttgctgatcc aaccgatgct
    17341 ttaggcatag caaaagctgt agccaaaaac aatgttacga taatgtgtgg aacctcgacc
    17401 ttcttaggaa tttacgctag aaataaaaag cttgatgcca ttatgtttga aagcttaaga
    17461 gtggttgttt caggagctga aaagcttaaa agcgaagttc gatctgcctt tgaaatgaaa
    17521 tttaaaaaga gtatttttga gggctatgga gcgactgaaa ccactcctgt tgcaagcgtg
    17581 aatttgccta atcgctttga tgcggattat tggatagttc accgcgcaag caaagaagga
    17641 agtgtgggca tgcctctacc tggaactgca gttcgcattg tcgatcctaa tacttacgaa
    17701 actctaaaaa caaatgaaga tgggctgata ctcataggcg gacaccaagt catggtagga
    17761 tatcttaaca acaaagaaaa aaccgatgaa gtcatcaaag aaatcgatgg cataagatgg
    17821 tataacaccg gcgataaagg gcatttagat gaagatggat ttttgtatat cgtagatcgt
    17881 tattcgcgtt ttgcgaaaat cggtggagag atgatatctt taggtgctct agaagaagaa
    17941 atcgctaaat tcatcgatac aaatatagtg aaattttgca ccgtagcttt agaagatgag
    18001 aaaaaaggcg aacaagttgc cttgcttata gaatgtgatg aagaattctt tgaaggtgtt
    18061 tgcgaagcta taaaaagctc aagtatgcct gctattttca agccaagtcg ctatctaaaa
    18121 gtagaaaaaa ttccactttt aggctctgga aaagtggact taaaaggcgc taaggaatta
    18181 gcaaaaagct tggtttaaaa taataaattt ttagcaaaga gataaatact ctttgctttt
    18241 ttaatttttt cttataattc tttcatatat ttaaatttac gccaaagccc aaactaaaat
    18301 tggcatagaa ataaaagcaa aaagcactcc aaaagccaca gtacttacag ctagattgct
    18361 atctaattta gccttcatta ccatagctcc tgctaaagtc attgtaggcg tggcactttc
    18421 tatgatggca actatgattg aagctttcat ttcaaaacca aaaagcttta ataaaagcac
    18481 aaaaattaaa ggtgctaaaa ccattttagc taaaatcaca agaatagtag gtttataagc
    18541 agttttaatc gccataaaac caagccccaa acctatggca aaaagtgcca ctggagtagc
    18601 tgcaccacca aataaacgaa taggggaaaa aataaattca ggcaaggata ttaatttaca
    18661 caaaaaaccc aaaagcaaag ccaaaaaagg tggaaaagaa agaatttttt taatatttgc
    18721 taccaaactt actttttcac cacttcccaa agaaaggata aaaggcccca aaagagaaat
    18781 aggcaaagta gtagctaaag catcatatag tattacttct gcgccaaatt gcgcattagc
    18841 aaaaatgcct tcaacgatag gcatacccac aaaaatagta tttccaaagc aagagagtaa
    18901 aaacatactc actagtgttg cttttgaaaa attaaaaata aaacctaaaa atacgactat
    18961 aaaagcagca agagcacaac taaaaaatcc tataaatatc aaaacaatca aagagaaatc
    19021 aaaatttaaa tgataagctt tatcgaaaat taaacaaggc aaagcaaaaa cgatagcaaa
    19081 atctaaaaag gttcttgctt gtttttgttt taagataccc actcttttag caaaataccc
    19141 acctgctagt aagataaaaa tcgtaaacaa aggactaaaa ataaacatac catatcctct
    19201 tcttgtttca ttacttata
//
LOCUS       DBBXRO010000022        19182 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.022, whole genome shotgun sequence.
ACCESSION   DBBXRO010000022 DBBXRO010000000
VERSION     DBBXRO010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19182
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.022"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..411
                     /gene="uraH"
                     /locus_tag="ACJFEZ_000561"
     CDS             <1..411
                     /gene="uraH"
                     /locus_tag="ACJFEZ_000561"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033971 - hydroxyisourate hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006144 - purine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HGG0916702.1"
                     /translation="LSTKKILLALISIPIFLNATEYQLSTHILDINSGQPASNVKVEL
                     YNLDQNRQWVKISEKFTKKNGRIADFLPYEKTENRSFGVYKLKFYTKDYYISHKVDSF
                     YPFVEVSFELLKDQKHYHIPITLSPFGYSTYRGS"
     gene            435..1778
                     /locus_tag="ACJFEZ_000562"
     CDS             435..1778
                     /locus_tag="ACJFEZ_000562"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II 3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HGG0916703.1"
                     /translation="MTWTKNSWKNFSIKQQPIYSNQEELNKVLNKLEKLPPLVFAGEV
                     RELQSALVRVCRKEAFLLQGGDCAESFANFGAVNIRDMFKILLQMAIVLTFAGGCPVV
                     KIGRMAGQFAKPRSSDYEEINGVKLPSYRGDIINGFEFNEKARIPDPNRMLEAYYQSA
                     TTLNLLRGFAKGGLANLHEVHRWNLGFLKKSELHQQYTDISEKISQALDFMEACGINT
                     YNTPSLKEVDVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRGLDEAHV
                     HFLSGVRNPLGVKIGPNASADDVIALANALNPNNEEGRLNIIIRMGAEKIATQLPKIF
                     SKLKKEGLNLVYSIDPMHGNTVKAGDFKTREFDKIMQEVRYFFEIAMSEGVYAGGVHL
                     EMTGQDVTECTGGASNVTAQSLEKRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            1775..2104
                     /locus_tag="ACJFEZ_000563"
     CDS             1775..2104
                     /locus_tag="ACJFEZ_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spx/MgsR family RNA polymerase-binding
                     regulatory protein"
                     /protein_id="HGG0916704.1"
                     /translation="MKVYGIKNCNSVKKALEFLDKKALEFDFIDIKKIDLGVLENWLK
                     YKRFSEIINTAGTTSKKLGLNKDKIESLSELELKNIILENPSCIKRPVIEKDNQIYIG
                     KEYEQIL"
     gene            2304..5906
                     /gene="dnaE"
                     /locus_tag="ACJFEZ_000564"
     CDS             2304..5906
                     /gene="dnaE"
                     /locus_tag="ACJFEZ_000564"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HGG0916705.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMRSEGLKPIIGLEAYLHNHEDISDKSSRQRFHLCLYAKNEVGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEEHSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGY
                     EAAKEAALWYKKVFGDDFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIA
                     NKCNLELNLGNPTPPNFKFTREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEER
                     LKFVDVSKHEEYKTRLEVEINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVAYSLKITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLARGVIRDVARVCDMSIPDADELAKLIPEELKITLDAAYEKEPKIKE
                     FIERHPKGPEVWEYAKALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTLINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQ
                     SGNTLGIFQIESGGMQNLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     KIEYPFDTLESVLEPTYGIIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKSEFADGAEKQGYDRVKAEELWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSVNKAIREFSAVEQEDGKDAIVYG
                     LGAIKSVGIPAVENLLEARERGEFKNIDDFLSRIEPTKINKRTLESLIKAGAFDEFGY
                     TRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDELTVGLQVNIVAKNEEFEVMEKLE
                     FEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKGSGEILSIGKIESFKSMMSKN
                     NKRYGRLEILDFYSTFEVTVFESNIEEIENILKNEASKNEAYGFLLSYKAEEGKLDSL
                     ALRSIKTLEELQEGEIKAVKKFNAKKNTQENKDFIAEPKEFENNIIELDLSRLNRELV
                     YEIHEIARSAHNPNEKGNKKLVLKIVSTGSCLLYHTDFVISDSVSEKIINKYAG"
     gene            complement(5923..6555)
                     /locus_tag="ACJFEZ_000565"
     CDS             complement(5923..6555)
                     /locus_tag="ACJFEZ_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HGG0916706.1"
                     /translation="MTLEQILEKTKNIRLVAASKYVDANIIEKLFTQGITEFGENQVQ
                     ALVQKKEILDKKDLNIKWHFIGTLQSNKINLLIKQKPILWHSCNGLKIAKAMDKRLNY
                     KLDTLLEINSANELSKSGLNPDQAIEEYLQIQEECPNLNLCGVMSIGSHSKVQREIEK
                     SFETTYKIYEKLQKHGAKICSMGMSNDFEIAIKCGSNMVRLGSILFKNLK"
     gene            complement(6592..7341)
                     /gene="flaC"
                     /locus_tag="ACJFEZ_000566"
     CDS             complement(6592..7341)
                     /gene="flaC"
                     /locus_tag="ACJFEZ_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HGG0916707.1"
                     /translation="MMISDASMMQQNYYLNNAQKASEKALENIAAVRAISGIDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALSDS
                     QKSMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLTTSGLSID
                     NQDNITNFMDQLGALRSEIGSGINAITSNINASVQNSINTKAAENNLLNNDMAKNVND
                     FNSNYLKENAAAFVAAQSNMQLQSKIASLLQ"
     gene            complement(7375..7848)
                     /locus_tag="ACJFEZ_000567"
     CDS             complement(7375..7848)
                     /locus_tag="ACJFEZ_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HGG0916708.1"
                     /translation="MKAINLFLLAAMIGIELILGIVVAPVIFYPANLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSIINLLFEIYSFAKEDMKFQIKFSKLMLAILILILSLVFV
                     LYFTNTIIELQNLGEQATKSQEFLSIHNASEVVIKIILLMQVFLYFLSFKIAKKC"
     gene            complement(7890..8690)
                     /locus_tag="ACJFEZ_000568"
     CDS             complement(7890..8690)
                     /locus_tag="ACJFEZ_000568"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HemK/PrmC family methyltransferase"
                     /protein_id="HGG0916709.1"
                     /translation="MTIKNALIEAKTRLEKHENEALFILCEYLKKDRTWIFLNQDLEF
                     DSKPYFELIKRFQSGEPFEYIFEKADFWGLEFKVKKGVLIPRYDSEILLSQVLKICKN
                     NNFQNILEIGFGSGILSIVLAKELGIKITACDINPKALQLALENAKLHKVEHLIDFKL
                     CDFKQIKENYDFIFSNPPYIQNSYPIDLWVQNEPKEALFGGEKGYEILEEIITFSFER
                     KVKFLACEFGYDQKVILKQILYQKNFQAEFFQDEQGYDRAFVAQFAKK"
     gene            complement(8687..9874)
                     /locus_tag="ACJFEZ_000569"
     CDS             complement(8687..9874)
                     /locus_tag="ACJFEZ_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HGG0916710.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYMLIVNIAWIGFGFLYLKELLISENSRLENTLFLLAFLIITS
                     ILNLPLSIYESFVKDKAHGFSNMTLKLFIKDTIKSLILTLIFGFLILYALLFCYDFFG
                     TFWWLAAFIFAFCVIVIINVIYPTLIAPIFNKMEKLEDENLLSKINDLMKQCGFNANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALSERELLAVLGHELGHFVHKDII
                     KALINGAITMFLLFFIFAHLPDFVYQESHLEGVNGGVFALLFIFANIFSFIISPLINA
                     LSRKNEFAADQHGSKLTSKEDMKNALLALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            10003..10188
                     /locus_tag="ACJFEZ_000570"
     CDS             10003..10188
                     /locus_tag="ACJFEZ_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HGG0916711.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVRANKF"
     gene            complement(10185..10727)
                     /gene="mog"
                     /locus_tag="ACJFEZ_000571"
     CDS             complement(10185..10727)
                     /gene="mog"
                     /locus_tag="ACJFEZ_000571"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HGG0916712.1"
                     /translation="MDIINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLVDEKECDLVITSGGTGPALRDVTPEATEVVCDKLMPGFGEL
                     MRLESLKFVPTAILSRQTAGIRNKSFIINLPGNPKAIAECLEPVFPAIPYCIDLIGGA
                     CIEGNDEVIQVFRPKKKCQN"
     gene            complement(10748..11731)
                     /gene="corA"
                     /locus_tag="ACJFEZ_000572"
     CDS             complement(10748..11731)
                     /gene="corA"
                     /locus_tag="ACJFEZ_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HGG0916713.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSVAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLIREFKNNDEEQNSIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDRDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            11849..12895
                     /locus_tag="ACJFEZ_000573"
     CDS             11849..12895
                     /locus_tag="ACJFEZ_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HGG0916714.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYDIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            12906..14230
                     /locus_tag="ACJFEZ_000574"
                     /pseudo
     CDS             12906..14230
                     /locus_tag="ACJFEZ_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
     gene            14227..15036
                     /locus_tag="ACJFEZ_000575"
     CDS             14227..15036
                     /locus_tag="ACJFEZ_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HGG0916715.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            15033..15872
                     /locus_tag="ACJFEZ_000576"
     CDS             15033..15872
                     /locus_tag="ACJFEZ_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916716.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYHF
                     KVL"
     gene            15873..16652
                     /locus_tag="ACJFEZ_000577"
     CDS             15873..16652
                     /locus_tag="ACJFEZ_000577"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916717.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFSALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAISNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            16656..17645
                     /locus_tag="ACJFEZ_000578"
     CDS             16656..17645
                     /locus_tag="ACJFEZ_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0916718.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSDCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            17642..18280
                     /locus_tag="ACJFEZ_000579"
     CDS             17642..18280
                     /locus_tag="ACJFEZ_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0916719.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(18304..19074)
                     /locus_tag="ACJFEZ_000580"
     CDS             complement(18304..19074)
                     /locus_tag="ACJFEZ_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0916720.1"
                     /translation="MKKFLTAFLVAFTGLFLVACQNTKTENNASNEANTTLTLKVGTA
                     PNYKPFNFKQDSKLTGFDTDLIEEIAKKNGIEIVWVETNFDGLIPALKSGKIDMIASA
                     MSATDERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKA
                     IKNAQVQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFS
                     FAFDKNKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
BASE COUNT         6538 a         2646 c         3320 g         6678 t
ORIGIN      
        1 ctttctacaa aaaaaatttt attggctctc ataagcatac caatatttct aaatgcaact
       61 gaatatcagt taagtaccca tattttagac attaactctg gccaacctgc atctaatgta
      121 aaagtagagc tttataactt ggatcaaaat cgacaatggg tcaagataag tgaaaaattt
      181 acaaaaaaga atggtaggat agcagatttt cttccttatg aaaaaacaga aaatcgttct
      241 tttggagttt ataaactcaa attttatacc aaagattatt atatatcaca taaagttgat
      301 agtttttacc cctttgtaga agtaagtttt gaacttttaa aagatcaaaa acattatcat
      361 atacctatta ccttatctcc ttttggttac tcaacctata ggggaagtta aaattatatc
      421 tttaggaaat aacgatgact tggactaaaa attcttggaa aaatttttct attaagcagc
      481 agcctattta ttctaatcaa gaggagctaa ataaagtctt aaataaactt gaaaaacttc
      541 ctcctttggt ttttgcaggt gaagtaagag agcttcaaag tgctttagta agagtatgcc
      601 gaaaagaagc ttttttactt cagggtggag attgtgcaga aagttttgca aattttggag
      661 cagtaaatat acgagatatg tttaaaattt tacttcaaat ggctatagtt ttaacttttg
      721 cgggtggttg tcccgttgtt aaaattggtc gtatggcggg gcagtttgct aagccaagaa
      781 gtagcgatta tgaagagata aatggagtaa agcttccaag ttatagaggt gatatcatta
      841 atggctttga atttaatgaa aaagctagaa ttcctgatcc aaatagaatg cttgaagctt
      901 actatcaaag tgctactact ttaaatttat tgcgcggttt tgctaaaggg ggattagcta
      961 atttacacga ggtgcatcga tggaatttag gttttttgaa aaaaagcgag ctgcatcaac
     1021 aatacaccga tatcagtgag aaaatttctc aggccttaga ttttatggag gcctgtggta
     1081 ttaataccta taatactcca agcttaaaag aagttgatgt ctatacttct catgaagctt
     1141 tgcttttgcc ttacgaggaa gctttaacta gagtggatag cttaagtggc gaaatttatg
     1201 attgttcagc tcatatgctt tggataggtg agagaactag gggtcttgat gaagctcatg
     1261 tacacttttt aagtggagtt agaaatcctt taggagtaaa aataggccca aatgcaagtg
     1321 ctgatgatgt gatcgcttta gctaatgctt taaatccaaa caatgaagag ggtagattaa
     1381 atatcatcat tagaatgggt gctgaaaaaa tagcaactca attgcctaaa attttctcta
     1441 aacttaaaaa agagggatta aatttagttt atagtataga tcctatgcat ggtaatacgg
     1501 taaaagcagg ggattttaaa acgcgtgaat ttgataaaat catgcaagaa gtaagatatt
     1561 tctttgaaat agctatgagc gaaggtgtat atgcaggtgg agttcatctt gaaatgacag
     1621 gacaggatgt aaccgaatgt acgggtggtg cgagtaatgt tactgcgcaa agtttagaaa
     1681 aacgctatga gacacagtgc gatccaagac ttaatgcaga tcaggcactt gagcttgcgt
     1741 ttttgattgc tgatttggtt aaaaaggcaa gaaaatgaaa gtctatggga ttaaaaactg
     1801 taattccgta aaaaaagctc tagagttttt agataaaaaa gctctagaat ttgattttat
     1861 tgatattaaa aagattgatt tgggcgtgct tgaaaactgg cttaaatata aaagatttag
     1921 tgaaattatc aatactgcag gcactacttc aaaaaaactc ggtttgaata aagacaagat
     1981 agagagctta agcgagcttg agttgaaaaa tattatttta gaaaatccaa gttgtattaa
     2041 acgccctgtt atagaaaagg ataaccaaat ttatattggc aaagaatatg aacaaatttt
     2101 gtgattttat ctcttgaaag atgattcatt ctttcaatct taaaaacttt taccatttta
     2161 ttttttaaaa tatatttgct gatggtgata aaattatcat gataaatttc aggtaatttt
     2221 tagtgataaa ttctttcaaa ttcagcaata aaaatttata atttttatca aaatctttag
     2281 tatttatatt ttcaaggaag acgatgagcc aatttaccca tcttcatttg catacagaat
     2341 attctttact tgatggagcc aataagctta aggaattagc taaaaccctt aaagagcagg
     2401 gtgctacaag tgtagccatg acagatcatg gtaatatgtt tggagcaatt gatttttatc
     2461 agactatgcg ttctgaggga ttaaaaccca tcataggtct tgaagcgtat ttgcataatc
     2521 atgaagatat ttcagataaa agctcgcgtc aaagatttca tctttgctta tatgcaaaaa
     2581 atgaggttgg ttatcaaaat ttaatgtatc taagttctca aagctatatc aagggtttgt
     2641 attattatcc acgcatcaat aaaaagcttt tggaagagca tagcgaaggg cttatctgtt
     2701 cttcggcttg cttgcaaggt gaggtaaatt ggcatttaaa tattcatagt gaaagaaatg
     2761 ttcgttttgg agccaagggt tatgaagcgg ctaaggaagc ggctttatgg tataaaaaag
     2821 tttttggcga tgatttttat tttgaaatta tgcgtcatgg tataggagat caaagagcca
     2881 tagacgatga tattataaga ctctcaaaag aattgaatat taaaattatt gctacaaatg
     2941 atacccatta tacttttaag gaaagagcgg ctgcccatga agtatttatg tgtattgcta
     3001 tgggcaaaaa gctgaatgat cctgatcgtt tacgccatag tgttcatgaa ttttatgtca
     3061 aatctccagc gcaaatgagc gagctttttg ctgatatacc tgaagctatt gaaaatactc
     3121 aagaaattgc taataaatgt aatttagagc taaatttagg aaatcccact ccgccaaatt
     3181 ttaaattcac aagagaatat gcaaaagaat ataatataag cttgcccgaa gagggtaaag
     3241 aatttagttt tgataatgat gatgtggttt ttgatgagct ttgcaaaaaa ggacttgagg
     3301 aaaggctaaa attcgttgat gtaagcaagc atgaagaata taaaacaagg ctcgaagtcg
     3361 aaatcaatat cataaaaaaa atgaaatttt caggctatat gctaatcgtt catgatttta
     3421 tcaaagtggc taaagataaa ggaattcctg taggtcctgg aaggggttca gctgcgggta
     3481 gtttggtcgc ttattctttg aaaatcacgg atttagatcc tattccttat agtttgcttt
     3541 ttgagcgttt tttaaatcca gaacgcgtat cgatgcccga tattgatgtg gatttttgtc
     3601 aagatagacg cgcagaagtg attgattatg tgattgataa atacggagcc gataaggttg
     3661 cacaggttat tacttttggt aagcttttgg ctcgtggagt gattcgtgat gtggcaaggg
     3721 tttgtgatat gagtattcct gatgcagatg aacttgccaa gcttatacct gaagaactta
     3781 aaatcactct tgatgcagct tacgaaaaag aaccaaagat taaagaattt atagagcgtc
     3841 acccaaaggg tcctgaagtt tgggagtatg ctaaggctct tgaaggactc aatagaaatg
     3901 caggtatgca cgcagcaggt gttgtgattt ctaatgaaag tttatggaaa aaaactcctc
     3961 tttttagaca gagtaaaaac gatgaaagac atttagttac acaatactct aaagatcatt
     4021 tagaggatgt agacttaatc aaatttgatt tcttgggttt aaaaacctta actttgatca
     4081 acaatgctat taaactcatt aaaaagcgtt acaataaaga cataatctgg gaagctatcg
     4141 atgtaaacga tgctaaagtt tataaaacca tacagagtgg gaatacctta ggaatatttc
     4201 aaatagaatc aggcggaatg caaaacttaa atgcaagatt aaagcctgag cgttttgaag
     4261 atattatcgc ggttcttgct ctttatcgcc caggtcctat ggaatcagga atgcttgatg
     4321 attttataga taggaaacat gggcttaaaa agatagaata tccatttgat actcttgaaa
     4381 gtgtattaga gcctacatac gggattattg tctatcaaga gcaagttatg caaattgttc
     4441 agattatagg aggattttca ctaggtggtg ctgatgtggt gcgccgcgct atgggcaaaa
     4501 aagatcctga aaaaatgaaa aaattaaaaa gtgaatttgc tgatggtgct gaaaagcagg
     4561 gttatgatag agtaaaagcc gaagagcttt gggaattgat tgttaaattt gcaggatatg
     4621 gttttaacaa atctcactct gcggcttatg ccttgatcac ttttcaaaca gcgtacttaa
     4681 aaacctacta tcctagtgaa tttatggcag cattgctaac aagtgaagaa aataatgtcg
     4741 ataaaatcgc tgtttatatc gatgaaatga aaaaaatgaa tatcaaactt cttccacctt
     4801 ctgttaataa agccatacgc gaatttagtg cagtagagca agaagatggt aaagatgcta
     4861 ttgtttatgg acttggagct attaaaagtg tgggaattcc tgcagttgaa aatttactcg
     4921 aagcaagaga gcgaggcgaa tttaaaaata ttgatgattt tttaagcagg atagagccta
     4981 caaagatcaa caaaagaacc ctagaaagtc ttatcaaagc gggtgctttt gatgaatttg
     5041 gctatacgag aaagtgcttg tttgataata tggacaattt aaccgaaggc tctaaaaaaa
     5101 tggccgatgc aagaaaaaat gcagcaagtt ctctttttgg agaagatgaa ttaactgttg
     5161 gtttgcaagt taatatagtg gctaagaatg aagaatttga ggttatggaa aaacttgaat
     5221 ttgaaaaaga gattttggga atttatgttt caggacaccc actcgatcgt ttttatgata
     5281 aatttaagga aatagattat gtaaaaagta tagatttttc aacacttaaa ggcagtggag
     5341 aaattttaag tataggaaag attgaaagct ttaaatctat gatgagtaaa aataataagc
     5401 gttatggcag gcttgagata ttggattttt attctacttt tgaagtgacg gtttttgagt
     5461 ctaatataga agagattgaa aatattttaa aaaatgaagc ctctaaaaat gaggcttatg
     5521 gatttttatt aagctataaa gcagaggagg gcaaattaga tagcttggct ttaagatcaa
     5581 ttaaaactct agaggagctt caagaaggag agattaaggc ggtaaaaaaa tttaacgcca
     5641 agaaaaatac tcaagaaaat aaagatttta tagcagagcc taaagaattt gaaaacaata
     5701 ttatagaact tgatctttca agattaaatc gagagcttgt ttatgaaatt cacgaaatag
     5761 caagaagtgc acataatcca aatgaaaaag gcaataaaaa gcttgtctta aagatcgtta
     5821 gcactggttc ttgcttgctt tatcatactg attttgttat ttctgatagt gttagtgaaa
     5881 aaattatcaa taaatatgca gggtaaagga ttaggggaga ttttatttta aatttttaaa
     5941 taaaatactt ccaagcctta ccatattaga tccacactta atggcgattt caaagtcatt
     6001 actcatcccc atggagcaaa ttttagctcc gtgtttttga agtttttcat agattttata
     6061 ggttgtttca aaactttttt caatttctct ttgaactttg ctgtgtgaac ctatgctcat
     6121 aactccacaa agatttaaat taggacattc ttcttgaatt tgtaaatatt cttctatagc
     6181 ttgatccgga ttaagtccgc ttttgctgag ttcattggca ctattgattt ctagtaaggt
     6241 atctagttta taatttagtc ttttatccat ggcttttgct atttttaatc cattacaaga
     6301 atgccagagt attggttttt gcttgattaa aagattgatt ttattgcttt gtagcgttcc
     6361 tataaaatgc cattttatat ttaaatcttt tttatcaaga atttcttttt tttgtactag
     6421 ggcttgaact tgattttctc caaattctgt aattccttga gtaaaaagtt tttcgataat
     6481 atttgcatca acatatttgc ttgctgctac aagacggata tttttggttt tttctaaaat
     6541 ttgttctaaa gtcattttta taaaaagaga agccctagat tagggctttt atcattgtaa
     6601 taagctagca attttgcttt gaagttgcat gttagattgt gcagcgacga aagcagctgc
     6661 attttctttt aggtaattgc tattaaaatc attgacgttt tttgccatat cattattcag
     6721 caaattattt tcagctgctt tagtattgat gctattttgc acactagcat tgatattaga
     6781 agtgatggca ttgatacccg atcctatttc acttcttaaa gcaccaagtt gatccataaa
     6841 atttgtaata ttgtcttgat tatctatgct aagaccacta gttgtcaatg gatttaaatt
     6901 ggtcgtttca gttccacttc ctactacaaa attcatagtt tggaatacat tttttccatt
     6961 ataggtagca ttattaaaag aatcattgat ggactcttgt atgcgtgttg cttctgttct
     7021 tagcatgctt ttttgagaat cacttaatgc tgcattattc atctttacgg agagttcatt
     7081 aagtctatca gcactttgag aaatatttgt caggcttgca tctgcaattt gtaaaacacc
     7141 aatagcatca taggcatttg cgacaccttg atctatagtg cttgattgag atcttaaaga
     7201 atcagcaata gctaaattag cactatcaat cccacttatc gcacggacag ctgcaatgtt
     7261 ttctaaagct ttttcactag ctttttgagc attatttaaa taataatttt gttgcatcat
     7321 gcttgcatca gagatcatca tagcctactc ctccttataa atttttattg gattttagca
     7381 tttttttgct attttaaagc ttaagaaata tagaaaaact tgcattaata aaataatttt
     7441 tataaccact tcgcttgcat tatgtatact aagaaattct tggctttttg tagcttgttc
     7501 acccaaattt tgaagttcaa taatggtatt tgtaaaatac aaaacaaaca ctaagctcaa
     7561 aattaaaatg agtatagcaa gcattaattt tgagaattta atctgaaatt tcatatcttc
     7621 ttttgcaaaa gaatagattt caaataataa attaataata gaaacaaaaa ttaacaaata
     7681 tcccatttta atgaaaattt gagtcatcat taagccactt tgaaaatgac ttaaaactcc
     7741 ctcgcctata aggttagctg ggtaaaaaat tactggtgca acaactatgc caagtataag
     7801 ctctatgcca atcatagctg caagtaaaaa tagattgatt gctttcaatt tttctcctta
     7861 attttttaac ttatcatatc atacaaagct tattttttag caaattgagc gacaaaagca
     7921 cgatcatatc cttgttcatc ttgaaaaaat tcagcttgaa aatttttttg atataaaatt
     7981 tgttttaaaa ttactttttg atcatagcca aattcgcatg ctaaaaattt aacctttctt
     8041 tcaaaggaga aagttataat ttcttctaaa atttcatatc ctttttctcc tccaaatagg
     8101 gcttcttttg gttcgttttg tacccaaaga tctatggggt atgaattttg gatataggga
     8161 ggatttgaaa aaataaaatc ataattttct tttatttgtt taaaatcaca aagtttaaag
     8221 tcgattaaat gttcaacttt gtgtaattta gcattttcta aggctaattg taaagctttg
     8281 gggttgatat cacaagctgt aatttttatt cccaattctt tagctaaaac tatacttaaa
     8341 attccgcttc caaagcctat ttctaatata ttttgaaaat tattattttt gcaaatttta
     8401 agaacttgtg aaagtaaaat ttcgctatca tagcgtggga ttaaaacccc tttttttact
     8461 ttaaattcca agccccaaaa atctgctttt tcaaagatgt attcaaaagg ttcccctgat
     8521 tgaaagcgtt tgataagttc aaaatagggc ttggaatcaa attctagatc ttgatttaaa
     8581 aaaatccaag tcctatcttt ttttagatat tcacaaagta taaataaggc ttcattttcg
     8641 tgtttttcaa gtctagtttt agcttctata agagcgtttt ttatggtcaa gaaagagcct
     8701 tgattctatc actaatgctt ggatgactaa gataaaaaaa ggtataaatc ttgcttgttt
     8761 taataaaagc tttattttct cttgctagag ctaagagtgc attcttcata tcttccttgc
     8821 ttgtaagttt gcttccgtgt tgatctgctg caaattcatt ttttctactt aaggcattta
     8881 ttaaaggaga gatgataaaa ctaaaaatat ttgcaaatat aaacaaaaga gcaaaaacac
     8941 ccccattaac tccttctaga tggctttctt gatatacaaa atcaggcaaa tgggcaaaaa
     9001 taaagaaaag taaaaacata gtgattgccc cattgattag ggcttttatt atatctttgt
     9061 gaacaaaatg tccaagttcg tgccctaaaa ctgctagaag ctctctttcg cttaaggctt
     9121 ttaaaagtgt gtcaaaaagc accactcttt tgcttttaaa aagcccacca aaataagcat
     9181 ttaaacgctt atctctttta ctagcatcaa tcacataaac cccattcgca ttaaagccac
     9241 attgtttcat tagatcattg attttactta gcaaattttc atcttctaat ttttccattt
     9301 tgttaaatat aggagcgatt agagtaggat aaataacatt tatgatcact atcacacaaa
     9361 aagcaaaaat aaaggccgca agccaccaaa aagtaccaaa aaaatcatag caaaaaagta
     9421 gggcataaag gattaaaaat ccaaaaatca aagttaaaat aaggcttttt atagtgtctt
     9481 tgataaaaag ttttaaagtc atatttgaaa aaccatgagc cttatcttta acaaagcttt
     9541 cataaatgct tagaggcaaa tttaaaatac ttgtgataat taaaaaagca agtaaaaata
     9601 gagtattttc aaggcgagag ttttcgctga ttaatagttc ttttaagtaa agaaatccaa
     9661 aacctatcca tgcgatatta acaatcagca tataaaaatt tgaaaaaagc ttgaattttt
     9721 cattttctat agcaatatcg gctgcgtttt gatagtcttt ttcgcttaaa atttgagctt
     9781 gtttgtcttt ttctctttct aagaaacgaa tttgagcata ggaaatccaa gataaaagtg
     9841 ctgtgtaaag acataaaatt gcaattaaag tcatttattt tttccttgat ttattttttg
     9901 cgaattctag cttaaaataa tgaaataaag ttaatagttt aaaatctaaa ataatattct
     9961 tttcaactaa gttggtgtat atttataaaa aaggattaaa gaatgttttt taagaaaaag
    10021 atttcacaaa agcaaaaaga aaagcctaaa attccaatca atgatgtgat tttagatgac
    10081 aggctttgta agtttaaaaa taaagtacaa aagataagca aagatgaagc ttcggcaagt
    10141 ctgcttgcta gacaattaag cagacttgtt agggctaata aattttaatt ttgacatttt
    10201 ttcttaggtc taaaaacttg aattacttca tcatttccct ctatacaagc tccacctatt
    10261 aaatcaatac aataaggtat tgcaggaaat acaggctcta gacattctgc tatggcttta
    10321 ggattgccag gtagattgat gatgaaagat ttattgcgaa ttcctgctgt ttgtcttgaa
    10381 agtatagctg tgggtacaaa ttttaagctt tctaaacgca tgagctctcc aaagcccggc
    10441 attaatttat cacataccac ttctgtagct tcaggggtta catcgcgaag tgctggtcct
    10501 gttcctccac tagtgattac taagtcacat tctttctcat ctactagata aagtaatttt
    10561 ttaataatta aatcataatc atcagggatt aattctttat gataaataat atcatttttt
    10621 atatatgaat ttaacactct ttcaatttca gcagtggctt tatcttcgta tataccacta
    10681 cttgctctat cgcttagggt taaaattcct atgtttatta tatccattgt ttctccttaa
    10741 taaattttta taaccatcct tttttcttga aaacaaccaa aggtaaaatg atagaaatta
    10801 ccatcacgcc aagcactatg ggataagcat agtgaagttc aagttcgggc atgaatttaa
    10861 aattcatacc ataaacagtt cctattaaag taggtggcat catggcaaca gttgcaacgg
    10921 tgaaaatttt aatgattttg ttttgttcta tgttgatttg gctggctaaa atggtttgaa
    10981 tattatctaa gatattaagt tgagaaacgc taaattcaac taaagaattc aaatctttta
    11041 aaactatggt taaattttgt tttatatctc tatcgatttt atcactttta agtaatgagg
    11101 tcatcgcacg acgcttgtca aataaagagt ctctaactcg catattaagc tcttgtaaac
    11161 ttgaaatatc ctttagcatt tcatcataac tatattcatc ttttttttct aaaacacttg
    11221 ttcttaagcg tcttgcttct ttatctatcc attctagtaa atccgcatct ttttcaacac
    11281 gcacttcaaa cattttatca ataatatcaa aaccatcttc aaaattcttt ggacttgcca
    11341 atatccttgc ctgaatttct tcaaaggtac taaattcatt atatcttatc gtaaataaaa
    11401 tatttttagc tgttgcaaaa gtgacaattt ccgtgcgaag cttgattgaa ttttgctctt
    11461 catcattatt tttaaattct cgaattaaaa aatgagcatt gatagttatg gtagcattat
    11521 cttcccaata ttttgcgcta agttctattt cctctctttc ttcttttgta ggaaactcaa
    11581 gattaaattc acttgatata aaagcaattt ctgctacact tggatgaagt aaatcaatcc
    11641 ataaaatatt ttgcggtagt tcttgactat cgagattaaa attgattctt tgaactaaag
    11701 cattttgagt tttgatataa atataaagca tgatcgctcc ttgtttatga ctttaaaatt
    11761 ataaccttgt ttgcttaaaa attaacttgt ttctaaaatg tttctaaaac tcattaaatt
    11821 tccaaaatat tttttgaaag gaaaaaaaat gagtaagaaa tttttcttaa gtttaggtct
    11881 tgttgcttta ttgttttcaa attcacaagc tattgatgag aatttgatta aagctgcgca
    11941 agcagaaggt agggtaaatt ctttagctat gcctgatact tgggcaaact ggaaggatac
    12001 ttgggcagat cttaaaaatc tttatgacat agaacatagt gatacagata tgagttcagc
    12061 tcaagaaatt gctaaattta aagccgaaaa gaaaaatgca agcggtgata taggggatgt
    12121 aggggcgtct tttggagaga tagcggttaa acaaggagta gctcagcctt ttaagacaag
    12181 ttactgggat caaattccaa cttgggctaa agataaagat ggaaattggc ttttagctta
    12241 tacaggaacc atagctttta tagtcaataa agatgtagta aaagatatac ctaaaacttg
    12301 gcaagatttg cttaagggaa attataaaat taccgtaggt gatgtaagtg tagcggctca
    12361 agctgtgagt gcagttttgg cagctaatta tgccttaggt ggggatgaaa aagatttaag
    12421 tcctgcttta gcttttttta atactttagc caaacaagga agacttgtaa ataatgatgt
    12481 aagtatagcc aatcttgaaa aaggtgaagt tgaagtgggt ttagtttggg attttaatgg
    12541 tttaggctat agagataaag tgggcaaaga tcgttatgaa gttttaatcc ctgctgatgg
    12601 tagtgttatt tcgggttata caactattat caataaatac gcaaaacatc caaatgcggc
    12661 taaattagcc cgtgaattta tactttctga taaaggacaa atcaatctag caaaaggtta
    12721 tgcaaggcca ataagaattg atcatattac cttgccagat gatataaaag ctaaactttt
    12781 accaagtgag caatacaaaa atgcaagagc aatcaaagat caaaaagctt gggaaaaaag
    12841 cgctaaagaa ttgccacaac tttggcaaga aaaagttata gtggatatga aataaaggag
    12901 attggatgaa aaaggttatt ttaacaagtg ctatgctttg cagtgtttta tttggagttc
    12961 aagagtatga ggccaattta gcagggcata ttatcataga ttctaaaagt acagtaaaac
    13021 ctcctaagga tgctcctgat ttttttaaaa cttatgggaa atttgcaaat atcactagag
    13081 aagaaaaaat tggaactttt aaatccaagg gaaacaggga aacagatttt tatttacctt
    13141 ttaaaaatca acctatacaa ggacatagtg ggataaaata tattccaaaa aaagatgttt
    13201 tttgggtgat tagtgataat ggcttgggta aaaagtataa ttcttatgat gctatgcttt
    13261 atgctcacga gtttaaattt gattttaaaa actcaaaata cgaactttta aaaacagttt
    13321 ttttaaagat agtgataaaa aataccccta tcctataacc accgaaacaa ccaaagaaag
    13381 gtatttaagt ggggttgatt ttgatactga gagtatacag gttatcaatg atgaatttta
    13441 tataggtgat gaatttggtc cttatttgct tcattttgat aagaatggga atttaaaaga
    13501 agtttttgat gtgtatgtgg agggtaaaaa acttatttct cctgataatc caagtttaaa
    13561 atttagcgat aagcctgatg gagaaaatga gaaatttaat atcaaacgtt ctaaaggctt
    13621 tgaagctatg gcaagctcta aagatggttc taaactttat ttgcttttag aaggaagcat
    13681 ttataataac aacgcttatg agaatgaaaa aggcaaagaa tatctaagaa tcatagaatt
    13741 tgatgtaaaa aataaaaaat tcaccggaaa aacttataaa tatttcttag aagataaaag
    13801 ccattccata ggtgatttta atatgataga tgataaatac ggcatcatca tagaaagaga
    13861 tcaaaaagaa ggcactaaag ataagacttg caaagaaggt gaagatacta agcattgttt
    13921 taataatgta gcccaattta aaagaattta caaggttaaa ttagatgata aaacccatga
    13981 agctcaaaaa atttcttata tagatctttt aaatattaaa gatagaaata aaatttctaa
    14041 aaagcctttg gtaaatgata aatttgtttt tccttttgaa gccatagaag gtgtggatat
    14101 agtagatgac tctcatatag tcgtagaaaa tgacaataac tttccttatt cttcaagtag
    14161 agaacctaat aaaactgatg ataatgaatt tattttactt gaagtaaaag attttttaaa
    14221 gagtaaatga tgtccaaagt tattttagtt gtgcttgatg gcttaaattg taaaagtgct
    14281 agtataaata tgggatattt aaatgcgctt tgcaaagaga atttaggcaa attttattct
    14341 ttagaatgcg aacttcctag tatgtctcgt cctttatacg agtgcttatt aacaggcgta
    14401 aagcctgttt taagtgggat aattaataat aaattgagtt tttcaaaaca aacaagcatt
    14461 tttgaccttt gtaaagaaca aggcttaaaa gctggaggcg cagcttatca ttgggttttt
    14521 gagctttata ataaaaaaga atttattcct tctttacatc gccatataga ggatgaaaat
    14581 ttaactttgc cttatggaca tttttattat gaagatgatt atttagattc tcatttattt
    14641 gcagatggag agcatttaag aaacaaatat aatctagatt ttactcttat acactctatg
    14701 aatatagatg atgcaggaca taaatttggc tcacactcta ttgagtatgc taataaaacc
    14761 aaaaaagttg atattttgat ttctgagtat ttgcctactt ggttagaaca aggtattaat
    14821 gtaatcatca caagcgatca tggtatgaca gagggtaaaa gtcatggagg cttaagtgaa
    14881 gatgaaattt tagtgccttt tttcactttt ggtagtgctt tttcgtatga aaatgccaag
    14941 ataaaacagg atgaaatttg tggcagtatc tgtgaaattt taggacttaa acacgataag
    15001 agatataatg atgaaatttt aaaggccaaa aaatgaaaga aaaatttcta gcctttttaa
    15061 gtattttacc tttttttata gtttttactt tttttatgat agcacctttg atttggattg
    15121 tttttaatgc tttttatgta gaagaggatg aaatttattc tttagccaat tttatacata
    15181 tttttgagtc caaattctat ctacaaagca ttataaattc tttacaaatc agttttattt
    15241 ctagtatttt tggactttta atagggcttt tggcgagcta ttctttattt gttttagctc
    15301 catcaaaaat atgtaaattt cttttttctt taaatactat gataagtaat ttttcaggag
    15361 ttcctttagc ttttgctttc attatagttc ttggaagcaa tggtgtagtt aatgtgtttt
    15421 tgaaaaattt aggcatagag ccttttgtta gtgtttatgc taatttcggg gtaaatattg
    15481 tttatgtgta ttttcaaatt cctttggcaa tcttgctttt gcttccagct tttaaaagtc
    15541 ttgaaaattc acatttaaat gcttgtaaaa tgttaggtgg aggcaatttt ttatattggt
    15601 taaaaatagc tttgcctttg ctcgctcctg ctttgtttgg tgtttttgtg attttatttg
    15661 ccaatgcttt tggagcttat gcgactattt atgctttaag ttcgggaaat tttaatgtcg
    15721 ctcctgtaag aatcgctgct ttaatcgcag gcgatatcaa tcttgatcct tatatggcta
    15781 gtgctttaag tatcattata actattatca tgcttgttgt tacctttata gccaatttcc
    15841 tttctaaaaa atatcatttt aaggtgcttt aaatgaatga aaatttgagt ttaaaagcta
    15901 aaatttatca ttatgcagtt ttgtttttgg tttttttgtt ttcagctttg cctttaatgg
    15961 ctactttttt atattctatt tccacttctt ggggtgtaag tgttttgcct gatgatctta
    16021 cgcttaaatg gtatcaagaa ctttttcatg acgaaagatt tttacttgct ctttggcatt
    16081 ctttgcttgt ttgtgtgggc agtattttac tttctgtgat tcttgttttt cctttggttt
    16141 ttgtgctaaa ttattatttt ttaaaattaa aagcctttgt aaatatactt attatcatgc
    16201 cttttgctgt acctcctata gttagctgtg tggggctttt gcaactttat gctgacaata
    16261 taggaggcac agcttggata ctcattttta cttattttac tatagctttg ccttttatat
    16321 atagggcttt agataatgct atatctaatg tcaatctaaa tgaactcatc gcatctaatg
    16381 ctatgcttgg aggttcttta atgggagcga tttttaagct tgtcttgcct aatttaagaa
    16441 atggaatttt ggtggcagtt tttttaagtt tttctttttt aataggcgaa tttttatacg
    16501 caaatattct tgtaggaagt gcttatgaga ctttgcaagt ttatctttat aatatcaaaa
    16561 atcaaagtgg gcattattct agtgctttgg taatagttta ttttgtgtta atttttataa
    16621 caacttttat agctagtttg attaaggagt aaaaaatggc ttatttaaag attaaaaatt
    16681 ttaaaaaagc ttatggggat aaaattattt ttgaagatat taattttagt gctaaaaagg
    16741 gtgagtttat aacccttttg ggcccaagtg actgtggaaa atccactctt ttaaggtgta
    16801 tagcagggct tagccaaatt aatggaggaa aaatttcttt aaatgataaa gatcttacta
    16861 aattaagtcc tcaaaaaaga aatataggta tggtttttca aaattacgct ctttttccaa
    16921 atcttaacgt ttttgaaaat gtagcttttg gtttaaagat caaaaaaatg gataaaaagg
    16981 acatagaaaa aagagtgaaa aaaatgttaa aactcgtcga gcttgaagaa tacgctaaaa
    17041 cttatccaca taagctttca ggcggacaaa tgcaaagagt ggctttagca agatctttgg
    17101 tgactaaacc tgatttactt ttgcttgatg agcctttatc ggcacttgat gctaaaattc
    17161 gtaagcattt aagggtgcaa attaaagaaa ttcaaaaaga acttgaactc accactattt
    17221 ttgtaacgca cgatcaagaa gaagctttag agttatccga taggattatt ttaatgaatg
    17281 agggtaaaat catacaaaat tccaacgcaa acaatcttta tcttttgcca gaatctcatt
    17341 ttgtggctag ctttatagga aattacaata ttttaagccc taaagagctt gatagcttgg
    17401 gtttaaaaca cgattttaaa aaagatatag ccttgcgtcc tgaaaccata gaaatttcta
    17461 acgaaggctt agaggctaag atcaaagaaa aatcattgct aggtaatatc atacgctata
    17521 gggttagagt gcaagaaatt gaatttaagg tagatacttt aaattttagc actcatagta
    17581 cttatgaagc aggtgataaa atcgctttaa aattcaatct ttctttagca aaagagttaa
    17641 aatgaagctt gttttatttg atttagatga tactttaata caaggcgata gtgctaaact
    17701 ttggcttaaa ttttgtgttg aaaaaggttt tttacctcaa gaatatttag aaaaaatcgt
    17761 tttttatcaa aaacaatatc aagaaaaaaa gcttgatatg gatgaattta tgactttttt
    17821 tcttcaaagt gttaagggta aaaatgaaga tagaatttca tctttagtag atgaatttat
    17881 aaaaatttat ataaaacctt atgaaaaagc taaagaactt ataatcaaat atcaagatca
    17941 aaggtgtatt ataatttcag ctacggctga atttttagtt agaaaaatcg cctctttttt
    18001 gggagtgaga gaaagcatag ccataaaatg cgagcgtgtg ggtgataaat ttagtggaaa
    18061 agcttacggg atttatagct ttaaggaagg caaggtttta agacttaagg aatatttggg
    18121 taaagattat gaaaaatgga tgaaagattc ttattttttt agtgattcta tcaatgattt
    18181 acctttacta gagtctgtta gcaaagcctt tgtatgtaat ggcgatgaaa aaattttaaa
    18241 aattgcaaaa gagagaaaat atgaaatttt aactttttaa gctataagcg tgaaaattca
    18301 cgcttattct aattcatatt ttttaattaa agtatcataa aatccatcag tttttgcttc
    18361 atctatgcct ttgttaaata tttcaataat atctttttgt ttatttttat caaaagcaaa
    18421 actaaagcct tctcctccat ctgtttcttg gtagaaactt accaattctg gattttcagc
    18481 taaaaaacct ttagcagtat cttgatcagc tacaatagca tcgattttgt tgttttttag
    18541 tgctaaaaca gctatgttta aatctttatt gctttgtact tgtgcatttt tgatagcttt
    18601 tgcagtattt tcttgtaaag ttcctaattg aactcctatt tttttgcctt ctaaatcatt
    18661 ttttgtttga agagagtcgt tgttttttag cttaagataa agatttttac tcatatagta
    18721 aggtttggta aaatcaacac tttgtcttct ttcatcagtt gcgctcatag ctgaagcaat
    18781 catatcaatc ttacctgatt tgagagcagg aatcaatcca tcaaaattgg tttcaaccca
    18841 aacaatttca ataccatttt ttttagcaat ttcttcaatc aaatcagtat caaaacccgt
    18901 aagtttagaa tcttgcttaa aattaaaagg tttataattt ggagcagttc caacctttaa
    18961 agtgagtgta gtattagctt cattgcttgc attattttct gttttagtgt tttggcaagc
    19021 caccaaaaat aagcccgtga aggcaactaa gaaagcggtt aaaaactttt tcattgtttt
    19081 cctttatagt aaaattttct ctatgattat atcaaagtta gctagccaat tggcaaaaaa
    19141 atccagtttt taattttttg ccaaaattaa ttaaaaaaat aa
//
LOCUS       DBBXRO010000023        18759 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.023, whole genome shotgun sequence.
ACCESSION   DBBXRO010000023 DBBXRO010000000
VERSION     DBBXRO010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18759
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.023"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1233
                     /locus_tag="ACJFEZ_000581"
     CDS             <1..1233
                     /locus_tag="ACJFEZ_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium channel activity
                     [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HGG0916721.1"
                     /translation="NAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCFI
                     VFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMMF
                     ALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAGG
                     GVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGEM
                     NDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVDI
                     YASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVNP
                     NVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEEV
                     EQKGLDVSLHGEKAYTLA"
     gene            complement(1293..2204)
                     /gene="hemH"
                     /locus_tag="ACJFEZ_000582"
     CDS             complement(1293..2204)
                     /gene="hemH"
                     /locus_tag="ACJFEZ_000582"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HGG0916722.1"
                     /translation="MKLVLFLNMGGATNLQDCETFLKNMFNDPYILGIKNKFIRRFVA
                     WIITKSRVKAMRENYKQMGGKSPLNELTQSLCEKLNAKTKDFKFDFVNLYVPPFANEV
                     LQKYTLSENDEIILFPLYPHHSSTTVTSSLEVLQNEISKQNIKAKVKTMDIFYENTLY
                     NEMIVSHILAKKSEFDAKTLIFSAHSLPQSIIDKGDLYEKHVNHHVELLKERLKDHFD
                     EIILAYQSKLGPVKWLEPNTSDILANLDNKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(2325..3179)
                     /locus_tag="ACJFEZ_000583"
     CDS             complement(2325..3179)
                     /locus_tag="ACJFEZ_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HGG0916723.1"
                     /translation="MKVGIVGLGKMGQNHLNELSKNKNFKINALFDMVENKNLNAPFF
                     INLDEFLNQDNDIIIIATPTNSHLEIARKVFCKCKCVLIEKPLALNLNEINEISNLAK
                     DHNVKVGVGFCERFNPAVLALKKELQNEEIISINIQRFSTYPQRISDVGILQDLAVHD
                     LDLLHFLSAEKITNANILKSFNKDNQREDESIITCKLEKTIACVHQSWNSTQRLRKIT
                     LVSKNHFYEANLADFSLSKDGQSLELMRQTPLFGEHMALYDLFLNKENYLANIQNAYA
                     VQEILEKF"
     gene            complement(3176..4288)
                     /locus_tag="ACJFEZ_000584"
     CDS             complement(3176..4288)
                     /locus_tag="ACJFEZ_000584"
                     /inference="COORDINATES: protein motif:HMM:NF005085.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase II
                     family protein"
                     /protein_id="HGG0916724.1"
                     /translation="MKLDQVGSFLRPKILKEARENFALGKIDEEQLRSIEDSCIRDLL
                     EECDKAGIYYLSDGELRRSWWHLDFYWGFGGIKKIKKEKGYIFKGIETRAEGIEIESK
                     IECNNHPFLKDFERLMQIAKGLKIDTNRLKLTIPSPSMLLYMLFIRGGKNTEFNYYGK
                     DFTKLKNDILNAYENFYKEFEALGGVYLQLDDTSFGSLCDYEFCALNEINADDICEEY
                     VDFLNESLKTMPKNIMSAIHICRGNYRSRYVASGGYMKVAKKLFGELRVDKFFLEFDD
                     ERAGNFEPLKYINDQIAVLGILTSKTNESPSVEELKARVKIAAQFLNPKQIEISTQCG
                     FSSTEEGNEIFTHSQWEKIKLLKQVLSELENEGFFS"
     gene            complement(4285..5364)
                     /locus_tag="ACJFEZ_000585"
     CDS             complement(4285..5364)
                     /locus_tag="ACJFEZ_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HGG0916725.1"
                     /translation="MNFINLQAQYLKYKEEIDSEIASVLSSSSFIGGAKLNEFETNLA
                     QYTHVQHAIGCSSGTSALYLALRALDIKQEDEVIVPSFTFIATAEMVALLGAKPVFVD
                     INLDNFNIDFELLKNAITPKTKAIIAVSMFGQMSNLQELNAFCESKNISLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCNDESIAKKLRILLNHGQTDRY
                     KHEFIGINARLDTLQAAILNVKLKHLDEEINKRQEIAKFYNENLTNCQIPKIDENAIS
                     TYAQYSVLVEDRARVLKAFEKANIPYAIHYPTPLHKQPCFSEFSHLKLEKSEFASKHI
                     LSLPFSAFLSQSEQESVIKVFKEGL"
     gene            5481..8009
                     /gene="alaS"
                     /locus_tag="ACJFEZ_000586"
     CDS             5481..8009
                     /gene="alaS"
                     /locus_tag="ACJFEZ_000586"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HGG0916726.1"
                     /translation="MDVRSEYLNFFKSKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FIGEVPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHESDDEAFELWQKHIQKERIYRFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGEEYFNGEEDYMGGDGDRFLEIWNLVFMQYERSADGKLTPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIIDEIAKLCGKTYIYESGASFRVIADHIRS
                     SVFLLAQGTSFDKEGRGYVLRRILRRALRHGYLLGLKKPFMYNLVDVVCKLMGEHYTY
                     LNEKKDFIKEQICLEEERFLSTIENGIEIFNKELKNTKEVFSGEVAFKLYDTYGFPLD
                     LTQDMLREKNLVVDEAKFEELMNEQKNRAKASWKGSGDKVASGDFKNLLEKFGENCFV
                     GYEKTECQATVLALLDEDFKEVSSLKGLGWVMLDNTPFYATSGGQIADTGYIGTSEVL
                     DTQKFFNLNLSLVKANEEIKLNDKIIAKIDTDKREQTARHHSATHLLHHALREILGSH
                     ISQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIISSSEAILENMPLEDAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSRAALEFCKTFMNENLNLKEELKSNDLSLGVKKLKNEILKLKNELKNSNKSQLNSSN
                     INGVQICVECVESGDIKTMIDEFKNKFEKAAILLIQTKDDKITLAAGVKNCPLKAGNL
                     VKNIAQILGGNGGGRDDFATAGGKDISKIDEALKQALDLIQKGL"
     gene            8013..8564
                     /gene="maf"
                     /locus_tag="ACJFEZ_000587"
     CDS             8013..8564
                     /gene="maf"
                     /locus_tag="ACJFEZ_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HGG0916727.1"
                     /translation="MLILASSSVSRSNLLKEAKIEFQQISFDYDENLDKNLKPSIYVQ
                     KIVLEKERQFCTTYEEKFKDETLLFADSIVCIGDKILTKANTKEEACEMLDLQDGKCA
                     SILSAFLLKNLKKRVFSLSKTTLYFSKFDPRDLKDYVENGFYKGKAGAIMCEGFHKNY
                     IIKQEGNLNTALGLDTQNLKAYL"
     gene            8561..10492
                     /locus_tag="ACJFEZ_000588"
     CDS             8561..10492
                     /locus_tag="ACJFEZ_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HGG0916728.1"
                     /translation="MKILKYIFSFFVVCLIAVFIYVAYLFANADTQGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYASYEELPPRLIEALVAIEDTSFFEHDGVNIDAIFRAI
                     VKIIRSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILSKEQILER
                     YLNYIFFGHGYYGVKTAAQGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIA
                     RANNVVARMYTLGWISKAEYDEAMKEIPQVYDDTLTQNAAPYVVDEVIKQLSPSIKDL
                     KTGGYKITLNIDLDVQEMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSTRQPGSSFKPFVYQAAINLGYSPMSEIADISRIFEGGAGD
                     NKDWKPKNDGGKFLGLITLKEALTRSRNLATINLALGMGLDVLHSKLVEFGFRDIPAN
                     LSIVLGSFGISPLEYSKFYTMFGNYGVIKEPQIIKQVQDRNDQIIMEFNSNEYRVSDE
                     AQSFLVLDMMRNVVEHGTGRNARVEGIEIAGKTGTTNKNIDAWFCGLTPEIEALIWYG
                     NDNNKPMRYTEGGARTSAPVFKEFLNKYLEKFPDTTRKFSIPNGVYRGSYKGQNAYYT
                     IKSPLPRTNMKFNESEILF"
     gene            complement(10535..13108)
                     /locus_tag="ACJFEZ_000589"
     CDS             complement(10535..13108)
                     /locus_tag="ACJFEZ_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0916729.1"
                     /translation="MANIQEFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALIVDS
                     SSILNQICNKFNISKEALELEIKSRISNLATSSNVNRENVRFSNEFINSLESAKGLMS
                     ANGDNYLSVDTWLISESEKNPIREILAKFIDIKEFQKELQNLRAGRKIESKTSDETLD
                     SLNKFGIDLTAKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKARKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQSALNSQFENEKAVFDSISAKKKEIDSLKNEAVFAKNKGEFQKAAELEYGKIPE
                     CEKEVANLEEKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYVGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNILLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQKSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADKLNENDEIVIDAKNDEIVIEK
                     A"
     gene            complement(13243..13524)
                     /locus_tag="ACJFEZ_000590"
     CDS             complement(13243..13524)
                     /locus_tag="ACJFEZ_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HGG0916730.1"
                     /translation="MKHTHTHSPKHIKAISNRLSRTIGHLEAIKKMVERDEDCSDILI
                     QLAAVKAAVNNTAKAILKEHLAHCMYHAVMEKDTQSIEDLNKAIDMFVK"
     gene            13667..15004
                     /locus_tag="ACJFEZ_000591"
     CDS             13667..15004
                     /locus_tag="ACJFEZ_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HGG0916731.1"
                     /translation="MLEFILSSKRFLAAITGFTGSLALCVFLASNLQAKPKNPSDLMQ
                     QRLESLDKLTKTLAIVEQYYVDDENITDLIDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTSGEFGGLGITVSMKDGALTVISPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTRDIIKVESVYAKLIEDENILYLRVTNFD
                     KNVVDMTSKELKKYPNVKGVILDLRNNPGGLLNQATGLVNLFVDKGVIVSQKGRVTSE
                     NQEYTANPKNKISDSSLVVLVNGGSASASEIVSGALQDLKRAIIVGENTFGKGSVQQI
                     IPINETEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFNIKESDLKQHL
                     ESELEKLDKNEKKEDKKEQKNDKNIITQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            15007..15717
                     /gene="purC"
                     /locus_tag="ACJFEZ_000592"
     CDS             15007..15717
                     /gene="purC"
                     /locus_tag="ACJFEZ_000592"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HGG0916732.1"
                     /translation="MKKKELLYEGKGKKLYTTEDENFLISEFKDDLTAFNAEKKGSES
                     GKGALNCKISTELFHLLEKNGIKTHLVETISDNEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKNDELGDPFINDEHCLILNLVQNEAQIKEIKEMAKKIN
                     AILTPFFDAKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            15726..15971
                     /gene="purS"
                     /locus_tag="ACJFEZ_000593"
     CDS             15726..15971
                     /gene="purS"
                     /locus_tag="ACJFEZ_000593"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HGG0916733.1"
                     /translation="MKILVNVFLKNGVLDPQGKAIEKALHSLNFNEIKEVRVAKQIVL
                     DLDESDEQKAKERVKSMCEELLVNSVIEDYELIVSEK"
     gene            15971..16615
                     /gene="purQ"
                     /locus_tag="ACJFEZ_000594"
     CDS             15971..16615
                     /gene="purQ"
                     /locus_tag="ACJFEZ_000594"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HGG0916734.1"
                     /translation="MKVAIIRFPGTNCEFDTQYAFEKLGVKAQIIWHEEKEIDADLVV
                     LPGGFSYGDYLRCAAIAKIAPAMQGVIAHAKRGGYILGICNGFQILLESGLLEGAMKH
                     NNNLSFISKNQNLRVVSNDNVFLKNFQKDEIINLPVAHGEGNYYADEATLKKMQDKDL
                     ILLKYEPNPNGSVLDIAGICDENKKIFGLMPHPERACDKILGNDIGLRMLEGFM"
     gene            16612..17811
                     /locus_tag="ACJFEZ_000595"
     CDS             16612..17811
                     /locus_tag="ACJFEZ_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916735.1"
                     /translation="MRIIFFLVFVCLSLFARSEISVFDGQDENMQRELQKLPKEEQQI
                     YQNIAPSDENSDFDSNIYDPFIPQSSLVLTTDDYVNKVYVGEVFPIVLHAKITEDTNF
                     DFNITLQKSKDLIFLNPDLKWEYIKGDYRAVLWFEAKTSNANLEQISVSLLRNGKIFQ
                     SASISIGAIHFENTPNNKNFSHLVASSLEVKKIKTSYFDDSSIITMIELSATNANLKS
                     FFVNGVEKQGIENLKGDFNSSNAFYYAIFPSTKTDFEFSYFNKDTKKMENMSFKLKIS
                     DDEVSTQSDLNPTNRDFNIYKQYALWALTLILALWFVWKKNYFILAGALLCFILGFLV
                     DTNTENAILKAGSRAKILPTESSTYFYTANSNEKVEVLGKRLHYVKVLFRDDKIGWVE
                     SSDLQKN"
     gene            17792..18484
                     /locus_tag="ACJFEZ_000596"
     CDS             17792..18484
                     /locus_tag="ACJFEZ_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HGG0916736.1"
                     /translation="MIYKKIKALYFWLFFIISVAFVVLCFCFMKSQDTLWKLRKSWAR
                     FQKNILFCKYEVIGEFDLKANMILMNHQSTLDIIALEDLYPKNLCWIAKKELGEIPLF
                     KIAIKKPKLLCIDRKNPRDLVRVLKEAKQRLSEDRVLAIFPEGTRSRNEKLLKFQSGA
                     KILSEKLDLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTSDKKWLENTRKKM
                     QELLDQERAKLC"
     gene            18478..>18759
                     /locus_tag="ACJFEZ_000597"
     CDS             18478..>18759
                     /locus_tag="ACJFEZ_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HGG0916737.1"
                     /translation="MLNTILVVGLGGFIGAVLRMLSINLINKILPHSISFGTLFVNVL
                     GSFMMRLLFSYAHHKGLSPALKSFISTGFLGAFTTFSTFSYENLLLLQSG"
BASE COUNT         6173 a         2751 c         3303 g         6532 t
ORIGIN      
        1 aatgcgataa attcaagttt tattgtgttg tgtactttgc tagttttgct tatgactcca
       61 gctttggcaa tgttttattc aggtatggta agaagtaaaa atactcttaa taccataatg
      121 aattgcttta ttgtttttgg tgttattact ttacaatggg tagtgcttgg atttagtctt
      181 tcttttggta aagatgaagg acttgggctt gtaggaaatt tcgagaattt cctcttagag
      241 ggtattagcg gatacaacgc ttcaggcgtt ccaaatattc tttttgtgat ttttcaaatg
      301 atgtttgcac ttattgcatc tgctattata acaggctctt tggtgggaag aatcaaactg
      361 ggtgttttgg tgatatttct acttttttgg agtactttag tttatgatgt gttagcgcat
      421 atgatttgga gcagtgaggg atttttgctt aaaagaggaa gtcttgattt tgctgggggc
      481 ggtgttgtgc atatcagctc tggggttgcc ggacttgtag gagctttgat ggtaggcgct
      541 agaaaaagtg atgatgagga taaaaacgcg cattctattc cttatgcttt cttgggtgcg
      601 attttgcttt ttataggatg gttaggtttt aatgctggaa gtgctggcga aatgaatgat
      661 attgctatca atgcttttat agtaagtatt atatcagcag cttgcggctt tttatcttgg
      721 gtggtacttg agtggctcat ccataaaaaa ccgactattt taggtggact tagtgggctt
      781 gtagcagggc ttgtgggaat tactccagct tgcggttatg tagatattta tgcttctctt
      841 gttataggga ctttgtcttc tgtgttttgt tattttggtt taagttttat taaatacaaa
      901 ctcaaatggg atgattcttt agatgccttt tctttacatg gaatcggagg tatttgggga
      961 ggaattgcca cagggctttt tgcaagtgct aaagtaaatc ctaatgtgat tgcccaaaat
     1021 gcacttggcg agggattttt tatcagcgga agtttggaac ttttaaaaga gcaaattttt
     1081 gctattgtga tttgtgtggt tttgtcagct cttataagct ttgttatttt taagattatc
     1141 tcttgtttta cagacttaag agtaaaagaa gaagtagagc aaaaaggctt agatgtgagt
     1201 ttgcacggag aaaaagctta tactttagct tagttggcta aatttttact aaaaagtcct
     1261 tgcaatcata aacaaggact tcaaaatcat tcttaattaa aatcagacaa atactttaaa
     1321 ataaagtgga taaattcatc actatcattt gggcaagtga ttaaatcata atcgcacttt
     1381 gctaaatgtt tatactccat acctagctca aaaatcgttt cagaacaatc tatgcaaaaa
     1441 gaaataggat aaatcaaagc tttgttatct aaatttgcca aaatatcgct cgtatttggc
     1501 tcaagccatt ttactggacc tagttttgat tggtaagcta agataatttc atcaaaatga
     1561 tcttttaatc tttcttttaa aagctctaca tggtgattga catgtttttc atataaatcg
     1621 cccttgtcga taatactttg cggtaaagaa tgtgctgaaa aaatcaaagt tttagcatca
     1681 aactcacttt ttttagccaa aatgtgagaa acaatcattt cattataaag cgtattttca
     1741 taaaaaatgt ccatagtctt tacttttgct ttgatgtttt gttttgaaat ttcattttgt
     1801 aaaacttcaa gcgatgaggt aactgtggtg cttgagtgat gtggataaag tggaaaaaga
     1861 atgatttcat cattttcact taaagtgtat ttttgtaaaa cttcattggc aaaaggtggc
     1921 acataaagat tgacaaaatc aaatttaaag tcttttgttt ttgcattaag cttttcgcac
     1981 aaactttggg taagttcatt gagtggagat tttccaccca tttgtttata attttctctc
     2041 atagctttta cgcgagattt cgtaataatc cacgccacaa atcttcttat aaatttattt
     2101 ttaataccca aaatataagg atcattaaac atatttttta aaaaagtttc acaatcttgt
     2161 aaatttgtgg ctccgcccat atttaaaaat aaaactaatt tcatctaaaa accttttttt
     2221 taattttatt ttacttcagt atggatttaa aatcaataaa tttttatcta agtgttttat
     2281 tgaaactcaa gttatttgga gtttattgca ttattttaga aaaattaaaa tttttctaaa
     2341 atttcttgca cagcataagc attttgtata tttgctaggt aattttcctt atttaaaaac
     2401 aaatcatata aagccatatg ttcgccaaaa agcggagttt gcctcatcag ctccaagctt
     2461 tgtccgtctt tgcttaaaga aaaatctgct aaatttgcct cgtaaaaatg atttttactc
     2521 acaagtgtaa tttttcttag tctttgcgta ctgttccagc tttgatgcac acaagcgatc
     2581 gttttttcta gcttgcaggt tataatgctt tcatcttctc tttgattgtc tttgttgaaa
     2641 ctttttaaaa tgttagcatt tgtaattttc tctgcgctta aaaaatgaag caagtcaaga
     2701 tcatgcacag ccaaatcttg caaaattcct acatcactga ttctttgcgg ataagtggaa
     2761 aatctttgta tattgatgct gataatttct tcattttgaa gctctttttt tagagctaaa
     2821 accgcaggat taaatctttc gcaaaatccc acacccactt ttacattatg atctttagcc
     2881 aaatttgaaa tttcatttat ttcatttaaa tttagtgcta aaggtttttc gatcaatacg
     2941 catttacatt tacaaaaaac ctttctagct atttctaaat gtgaatttgt cggtgttgca
     3001 atgatgatga tgtcattatc ttgatttaaa aattcatcca aattaataaa aaaaggcgcg
     3061 tttaaatttt tattttcaac catatcaaac aaagcgttga ttttaaaatt tttattttta
     3121 ctaagctcgt ttaaatggtt ttgccccatt tttccaaggc ctacaattcc tactttcaag
     3181 agaaaaatcc ttcattttca agttcgctta aaacttgttt taagagtttg attttttccc
     3241 attgagaatg agtgaagatt tcatttcctt cttcagtgga gctaaagcca cattgtgtgc
     3301 tgatttcaat ttgttttgga tttaaaaatt gagctgctat ttttactctt gcttttaact
     3361 cttctacgct tggactttca ttggttttgc tagtaagaat tcctaaaacc gcaatttgat
     3421 cgttgatgta ttttaaaggt tcaaaatttc cagccctttc atcatcaaat tctaagaaga
     3481 atttatcgac tctaagttct ccaaaaagct tcttagcgac tttcatatag cccccacttg
     3541 ctacatagcg actgcggtag tttccacgac aaatatgaat tgcactcatt atgttttttg
     3601 gcatagtttt taaactctca tttaaaaaat ctacatattc ttcacaaata tcatctgcgt
     3661 tgatctcatt taaagcgcaa aattcataat cacataaaga accaaagctt gtatcatcaa
     3721 gttgcaaata tactccacca agagcttcaa attctttgta aaaattttca taagcattta
     3781 aaatatcatt tttaagtttt gtaaaatctt taccatagta attaaattct gtgtttttgc
     3841 ccccgcggat aaaaagcata tataaaagca ttgaagggct tggaatggta agttttaagc
     3901 gatttgtatc tatttttaaa ccttttgcaa tttgcattaa tctttcaaaa tcttttaaaa
     3961 aaggatggtt attacactcg attttacttt caatttctat gccctcagcc cttgtttcta
     4021 tccctttaaa gatataaccc ttttcttttt tgattttttt aatgccgcca aaaccccagt
     4081 aaaaatcaag atgccaccaa gaacggcgta attccccatc acttaaataa taaattcccg
     4141 ccttatcgca ctcttctaaa agatctctta tgcaagaatc ttcaatgctg cgaagttgtt
     4201 cttcatcgat ttttcccaag gcaaaatttt ctctagcttc ttttaaaatt ttaggtctta
     4261 aaaaagatcc cacttgatct aatttcatag tccttcctta aacactttaa ttacactttc
     4321 ttgctcactt tgacttaaaa atgctgaaaa tggcaaggat aaaatatgct tactcgcaaa
     4381 ttctgatttt tctaatttta aatgcgaaaa ttcactgaag caaggttgct tgtgaagtgg
     4441 tgtaggataa tggatagcat aaggaatgtt tgctttttca aaagctttta aaactctagc
     4501 tctatcctct actaaaacgc tatattgcgc ataagtactg atggcgtttt catcaatctt
     4561 tggaatttgg caatttgtca aattttcgtt gtagaatttt gctatttctt gtcttttgtt
     4621 aatttcttca tctaggtgtt ttaattttac atttaaaatg gctgcttgaa gagtatcaag
     4681 acgagcattt atccctataa attcatgttt ataacgatca gtttgtccat gattgagtaa
     4741 aattcttaat tttttagcta tgctctcatc gttacaaaaa atcgctccac catcaccata
     4801 agcccccaaa ggcttagaag gaaaaaagct agtgcatgaa attttggcaa tagagcaaga
     4861 tttttcaccc ttaaagcttg ctccaaaact ttgtgcgcca tcttcaatca agcttatatt
     4921 tttgctttcg caaaaggcgt ttagttcttg taaattactc atttgaccaa acatactcac
     4981 agcaataatt gcttttgttt taggagtgat agcgtttttt aggagttcaa aatcgatatt
     5041 aaaattatct aaatttatat ctacaaatac aggcttagct cctagtagtg ctaccatttc
     5101 agcagtagct ataaaagtaa agctaggcac tatgacttca tcttcttgtt tgatatctaa
     5161 agcccttaaa gcaagatata aagcacttgt gccacttgag catcctattg cgtgttgtac
     5221 atgagtgtat tgggctaaat ttgtttcaaa ttcatttaat tttgcacccc ctataaaaga
     5281 ggagcttgat aaaacacttg cgatttcaga atcgatttct tctttatatt taagatattg
     5341 agcttgaaga ttgataaaat tcataaaaaa ccttgaaaat taaagaaatt aattaaaaag
     5401 gcttattgta ttttagtttt acttaattta aagtaatttt ggtatgatat gcttttataa
     5461 aaatttctta ggaaaatctt atggatgtta gaagtgaata tttaaatttt tttaagtcta
     5521 agggtcatga aatcacccct tcaagtcctt tagttcctga tgatgcaacc ttgcttttta
     5581 caaatgcagg aatggtgcct tttaaaagta tatttatagg agaagtgcct cgtccaaatc
     5641 caccacgcaa aacaagttgc caaacttgta taagagcagg gggaaaacac aatgatttag
     5701 ataatgtagg ctataccgct cgccatcata ctttttttga aatgttagga aatttcagct
     5761 ttggggatta ttttaaagaa caagctatcg cttatgcttg ggaatttgta accgaggtat
     5821 taaaacttcc taaagataga ctttatgtaa ccgtacatga aagcgatgat gaagcgtttg
     5881 aattgtggca aaaacatatc caaaaagaaa gaatttatag atttggcgat aaggataatt
     5941 tttggcaaat gggcgataca ggtccttgtg gtccttgtag tgagattttt tatgatcaag
     6001 gcgaagagta ttttaatggc gaagaagatt atatgggtgg agatggagat aggttcttag
     6061 aaatttggaa ccttgttttc atgcagtatg aaagaagtgc tgatggtaaa cttacgcctt
     6121 tgccaaaacc aagtattgat acaggaatgg ggcttgaaag ggttacagct atcaaagagg
     6181 gtaaatttag caattttgac agctcgcttt ttatgcctat tatcgatgaa attgcaaaac
     6241 tttgtggtaa aacttatatt tatgaaagtg gagctagctt tagagttatc gctgatcata
     6301 taagatcgag tgtatttttg ctcgctcaag gaacgagttt tgataaagag ggtaggggtt
     6361 atgttttacg ccgtatttta cgccgtgctt taagacatgg gtatttattg gggcttaaaa
     6421 aaccttttat gtataattta gttgatgtag tttgcaagct tatgggtgag cattatacct
     6481 atcttaatga aaagaaagat tttataaaag agcaaatctg cttagaagaa gagagatttt
     6541 tgagcactat agaaaacggt attgaaattt ttaataaaga gcttaaaaat accaaagaag
     6601 tttttagcgg agaggttgca ttcaagcttt atgatactta tggttttcca cttgatttaa
     6661 cgcaagatat gttaagagaa aaaaatcttg tggtagatga agctaaattt gaagaattga
     6721 tgaatgaaca aaaaaatcgt gcaaaagctt cttggaaagg aagcggcgat aaggtagcaa
     6781 gtggagattt taaaaattta cttgaaaaat ttggagaaaa ttgctttgtg ggttatgaaa
     6841 aaacagaatg tcaagccacc gttttagctc ttttagatga agattttaaa gaagtttcaa
     6901 gtcttaaagg tctaggctgg gttatgcttg ataatactcc tttttatgca acaagtgggg
     6961 ggcaaattgc tgatacagga tatataggaa ctagcgaagt gctagatact caaaagtttt
     7021 tcaatctcaa tcttagtctt gtaaaagcta atgaagaaat caagcttaat gataagataa
     7081 tagcaaaaat tgataccgac aaaagagaac aaactgcacg ccatcattca gctactcatc
     7141 ttttacatca cgctttaaga gaaattttgg gttctcatat cagtcaagca ggttctttgg
     7201 ttgaaagcaa taaattaaga tttgatttta ctcatcacaa agctttaagc aaggaagaat
     7261 tagaaagtat tgaaaaaaga gttaatgaaa tgatcattag ctcaagcgaa gcaattttag
     7321 aaaatatgcc tttagaagat gctaaaaaaa gtggagctat tgctttattt aatgaaaaat
     7381 atcaaggtaa tgtacgcgtt ttaaccttag gtgaaagtaa agagctttgc ggaggaactc
     7441 atgtaaaaaa tacagctcaa ataggaagtt tttacatagt taaagaaagt ggtgtaagtg
     7501 caggtgtaag gcgtatagaa gcggttgttt caagagcagc tttagaattt tgcaagactt
     7561 ttatgaatga aaatctaaac cttaaagaag agcttaaaag caatgattta agtcttgggg
     7621 taaaaaaact taaaaatgaa attctaaaat taaaaaacga gcttaaaaat tctaacaaat
     7681 cacaacttaa ctcaagcaat atcaatggag ttcaaatttg cgttgaatgc gtagaaagcg
     7741 gtgatataaa aaccatgatt gatgaattta aaaacaaatt tgaaaaagct gctattttac
     7801 taatacaaac aaaagatgat aagataaccc ttgcagcagg tgtgaaaaat tgtcctttaa
     7861 aagctggaaa tttggttaaa aatattgctc aaattttagg tggcaatggc ggcggaagag
     7921 atgattttgc tacagcaggc ggtaaagata taagcaagat agatgaagct ttaaaacagg
     7981 ctttggattt gatccaaaaa ggactttaag caatgttaat tcttgcttca agttctgttt
     8041 ctagatcgaa tttgctcaaa gaggcaaaga ttgaatttca acaaataagc tttgactatg
     8101 atgaaaattt agacaaaaat ttaaagccta gtatttatgt gcaaaaaatc gtcttagaga
     8161 aagaaagaca attttgcacg acttatgaag agaaatttaa agatgaaact ttactctttg
     8221 cagacagcat agtttgcata ggagataaaa ttcttactaa ggcaaatacc aaagaagaag
     8281 cttgtgaaat gcttgattta caagatggaa aatgtgctag tattttaagt gcttttttgt
     8341 taaagaattt aaaaaaaaga gttttctctc tttcaaaaac aacgctttat ttttcaaaat
     8401 ttgatcctcg tgatttaaaa gactatgtag aaaatggatt ttataagggt aaagcagggg
     8461 cgattatgtg tgagggtttt cataaaaact atatcattaa acaagaggga aatttaaaca
     8521 ccgctttagg acttgatact caaaatttaa aggcttattt atgaaaattt taaaatatat
     8581 attttcattt tttgttgtgt gtttgatcgc tgtatttatt tatgtggcct atctttttgc
     8641 aaatgcagat actcaaggat atacttttaa agagtataaa cctccactta caacgcaaat
     8701 ttacgataga aatggaaaat tagtagccaa tatctttgaa caacatcgtt tttatgcaag
     8761 ctatgaagaa ttacccccgc gtcttataga agctcttgta gctatagaag atactagctt
     8821 ttttgaacat gatggggtaa atattgatgc tatttttagg gctattgtta aaattataag
     8881 aagtggtgga aaaaccatgg agggagcttc aacgcttact caacaattta tcaaaaatac
     8941 agaattaacc cctgaaagaa ctatcactcg taaaattcgc gaagccttgc tcgcctataa
     9001 aatggaaaca attttaagca aagagcaaat tttggaaaga tatttaaatt atatcttttt
     9061 tggacatgga tattatgggg ttaaaacagc tgcgcaagga tattttcata aaaatctaaa
     9121 tgagttaagc cttaaagaga ttgctatgct tgtgggtatg ccaaaagcac caagtagcta
     9181 tgatcctaca aaacatttag atctttctat cgcaagggca aataatgttg tagcaagaat
     9241 gtatacatta ggttggattt ctaaagcaga atatgatgaa gctatgaaag aaattcctca
     9301 agtttatgat gatactttaa cgcaaaatgc agctccttat gttgtagatg aggtgattaa
     9361 gcaattaagt cctagcatta aagatcttaa aacaggcggc tataaaatca ctttaaatat
     9421 agatttagat gtgcaagaaa tggctcaaaa tgccttaaaa tttggttatg atgaaatagt
     9481 aaagcgtgat aaggatgcaa atttaagtac gctaaatgga gctatggtgg tggttaatca
     9541 tcaaagtgga gatgttttag ccttagtggg tggggttgat tatgaaaaaa gtaattacaa
     9601 ccgagctact caaagcacac gacaaccagg cagctccttt aaaccttttg tgtatcaagc
     9661 agctattaat ctaggctatt cgcctatgag tgagattgca gatatttcta gaatttttga
     9721 aggtggagca ggggataata aagactggaa acctaaaaat gatggaggta aattccttgg
     9781 cttgattacc ctaaaagaag ccttaacacg ttcaagaaac ctagctacta tcaatcttgc
     9841 tcttggtatg ggacttgatg tgcttcattc aaagcttgta gaatttggct ttagggatat
     9901 tccggctaat ttatcgattg ttttaggaag ctttggaatt tctcctttgg agtattctaa
     9961 attttatact atgtttggaa attatggagt tataaaagag ccacaaatca ttaagcaagt
    10021 acaagataga aatgatcaaa ttattatgga atttaactca aatgaataca gagtgagcga
    10081 tgaagcgcaa agctttttgg ttttggatat gatgagaaat gttgtagagc atggtacagg
    10141 acgcaatgca agggttgaag gcatagaaat agcaggcaaa acaggaacta ccaataaaaa
    10201 tatcgatgct tggttttgtg gcttaacacc tgagattgaa gctttgattt ggtatggaaa
    10261 tgacaataat aagcctatgc gttatacaga gggtggggct aggacttctg ctcccgtgtt
    10321 taaggaattt ttaaataaat acttagagaa atttcctgat actacaagaa aattcagcat
    10381 tccaaatggg gtatatagag gaagttataa ggggcaaaat gcttattata ctatcaaatc
    10441 acctctgcca agaacgaata tgaaatttaa tgaaagtgag attttatttt aaaagtatgt
    10501 gaagaaatag aaaaatctat ttcttctaaa agagttaagc cttttcgata acaatctcat
    10561 cattttttgc atcgataaca atctcatcat tttcattaag cttgtctgca agtatcatat
    10621 cgcttagctt gtcttcgatt aaatcataaa tagcccttct taaaggtcta gcaccaaagt
    10681 caggatcaaa tccgtcctta gcgattaaaa gcgcagcatt ttcactaaga cttgctttta
    10741 tacccttatt ttccaaactt ttttgcaagt ctttaaataa aagtttaact atctcatatg
    10801 cctcatcttt tccaagtgga ttaaaggtga tgatatcgtc taagcggttt aaaaattcag
    10861 gtttaaagaa attttttaac tcatttttta ccgcatcttc ttgttctttt ccgcttaaat
    10921 tcatgatagc acttgaggcg atattagaag ttaaaataat aatggtattt ttaaaatcca
    10981 cagttacacc cttgctatca gttgccctac catcgtctaa aattcctaaa agtatattaa
    11041 acacatcctt gtgggctttt tcgacttcat caaataaaag cacgctataa ggttttctac
    11101 gcaccgcttc agtaagctct ccgccttctt catgccctac ataacctgga ggcgctccta
    11161 agagtcttga aacgctatgt ttttccataa attcactcat atcaaagcga atcattgctt
    11221 tttcatcatc aaataaaaat ttcgccaaag ccttagcaga ttgtgttttt cctactcctg
    11281 taggccctaa aaataaaaag cttcctatag gcttattgtc tgcatttaat cctgctttat
    11341 tgcgtttgat agctcttgct aaagcgctta gagccttatc ttgcccaatc acactttctt
    11401 ttaagtgttt ttctacttcc aaaaattttt gcttctctga agtcagcatt ttttgcacgc
    11461 taattcctgt ccatttgctt aaaattccag caaccaaatc ttcatccact tgatttttaa
    11521 gcaagactcc attttcgctc atttttttcc atttttcttc taaatttgcc acttcttttt
    11581 cgcattctgg aattttgcca tattctaatt ctgcagcttt ttggaattca cccttatttt
    11641 ttgcaaaaac agcttcgttt ttaagactat cgatttcttt tttctttgcg cttatgctat
    11701 caaaaactgc tttttcattt tcaaattgtg aatttaaagc actttgtttt tcttttaaat
    11761 tggccagttc tttggcaatt tcatctagtc ttttttgatt tttttcatca ttttccatct
    11821 ttagagcttc attttctact tctaaagttt ctatgtcttt gcgtgccttt ctcaaagagc
    11881 ttggttcgct ttcaatttgc attttaagtt cagccgcagc ttcatcgatt aaatcaattg
    11941 ctttatcggg taaaaaacga tcggcaatat agcgttttga aagcttagct gccgctacta
    12001 aagcactatc attgatggtg acattgtgat gaatttcaag tttttcttta atacccctta
    12061 gcattgctaa agcttcattt acgctaggtt cgcctacatt tacaggttga aaacggcgtt
    12121 gcaaggccgc atctttttca aagtatttac gatattcttt aagagtggtt gctcctatgg
    12181 tgtgaagttc gcctcttgca agtgccggct ttaaaatatt tgcagcatcc atacttcctt
    12241 cgcttgctcc tgcgcctact atggtgtgaa tttcatcgat aaaaagtatg atattttcac
    12301 ttttaatgac ctcatttacc accgctttta atctatcttc aaattctcca cgatattttg
    12361 ctcctgcgat caatgcactc atatcaagag ctatgacttt tttattttgt aaagattttg
    12421 gcacatcttt tttgataatt ctttgtgcta aagcttctac gatcgctgtt tttcctactc
    12481 ctggttcacc taaaagtata gggttgtttt ttgttttgcg tataagaatt tgcattaagc
    12541 gttcgatttc ttcttctctg cctataacag gatcaagctt tccttcactt gcttttgcgg
    12601 ttaaatctat accaaattta tttaagctat ctagggtttc atcacttgtt ttgctttcga
    12661 ttttgcgtcc tgctcttaaa ttttggagct ctttttgaaa ttctttaata tctataaatt
    12721 tggctaaaat ttctctaata ggattttttt cgctttcgct tataagccaa gtatctacac
    12781 ttaagtaatt atcaccattg gcactcataa gtcctttagc actttctaag gaattgataa
    12841 attcattaga aaaacgcaca ttttcacgat tgacattaga gcttgttgca agatttgaaa
    12901 ttctgctttt gatttcaagt tctaaagctt cttttgaaat attaaattta ttacaaattt
    12961 gatttaaaat acttgaactg tctacaatta aagcccataa aagatgtaaa gggacaactt
    13021 cattattttt agaatgaatc gccaaagacg ctgcactttc aaggtttgaa agcatattgt
    13081 cggttaaaaa ttcttgtata tttgccattg tatatccttt ttcaagtttt atatatgaag
    13141 tattatataa ctttagtcaa ataatgtcaa gttattttat aaaatttttg aaataaaatt
    13201 aagtatattt tagaaagtat tgaattttaa gcacttaaat agctatttta caaacatatc
    13261 aatagccttg tttaaatcct ctatgctttg cgtatctttt tccatcaccg catgatacat
    13321 acaatgggct aaatgttctt taagtatggc tttagcggta ttgttaaccg ctgctttaac
    13381 cgcagcaagc tggataagaa tatcactaca atcctcatct ctttcaacca tttttttaat
    13441 agcttctaaa tgtcctatag tgcgacttaa acgattactt atggctttga tatgttttgg
    13501 agaatgcgta tgagtgtgtt tcatttatat tctttcttgc tttgaaatta aaaaatataa
    13561 aatattttag cattaatttt tttaaatcca ttaaacttat aacaaattta gtattattta
    13621 cgaattttta agcaaaagtt attaaaattt gggcttaaaa tatttaattt tggagttcat
    13681 tttgagtagt aaaagatttc tagccgctat tacaggtttt acaggctctt tggctctttg
    13741 tgttttttta gcaagcaacc tacaagcaaa accaaagaat ccatctgatt taatgcaaca
    13801 acgcttagag tctttagata aattgactaa aactttggct atagttgagc agtattatgt
    13861 agatgatgaa aatattacag atttgattga taaatcactt tctggacttt tgagcaatct
    13921 tgatgcgcat tcttcttttt taaatgaaaa agattttaat gatatgaaaa ttcaaacaag
    13981 tggtgaattt ggtggacttg ggatcactgt aagtatgaaa gatggtgcct tgactgttat
    14041 ttctcctata gagggaactc cagcagataa agctgggatt aaatcaggcg atataatatt
    14101 aaaaatcaat gatgaggcta ctttgggaat caatttaaac gatgcagtgg ataaaatgcg
    14161 cggaaaacca aagacgcaaa tcactcttac tatatttaga aaaggagcaa ctaagccttt
    14221 tgatgttact ttaacgcgtg atattatcaa agtagaaagt gtttatgcaa agcttatcga
    14281 agatgaaaat atactttatt taagagttac gaattttgat aaaaatgttg tggacatgac
    14341 aagtaaagag cttaaaaaat atcctaatgt aaagggtgta attttggatt taagaaataa
    14401 ccctggcggt cttttaaatc aagctacagg gcttgttaat ttatttgtag ataaaggagt
    14461 aattgtttct caaaaaggac gcgttacaag tgaaaatcaa gagtatacag caaatccaaa
    14521 aaataaaatt tctgacagtt ctttagtagt gcttgtgaat ggcggaagtg cgagtgctag
    14581 tgagattgtt agtggggctt tgcaagatct taagcgagct ataatcgtag gagaaaatac
    14641 ttttggaaaa ggcagtgttc agcaaattat tccgatcaat gaaactgaag ctttaagact
    14701 tactattgca agatattatt tgccaagtgg gcgcactata caagcagtag gtgtaaaacc
    14761 tgatattgaa gtatttccag gaaaagttaa tactcaagaa gatggcttta atatcaaaga
    14821 aagtgattta aagcagcatt tagaaagtga attggaaaaa cttgataaaa atgagaaaaa
    14881 agaagacaaa aaagagcaaa aaaatgataa aaatatcatt actcaaaagc aaattaatga
    14941 tgatgcgcag ttaaaatctg ccatagatac cattaaaata ttaaatatta aacaaggaca
    15001 ataattatga aaaaaaaaga attactttat gaaggtaagg gtaaaaaact ctatacaacc
    15061 gaagatgaaa attttcttat aagcgaattt aaagacgatt taacagcctt taatgctgaa
    15121 aaaaaaggaa gtgaaagtgg aaagggtgca ttaaattgca aaatcagcac agaacttttt
    15181 catttgcttg aaaaaaatgg cataaaaact catttagttg aaaccattag tgataatgag
    15241 caagtggtaa aaaaatgcaa aattgtgcct attgaggtta tagtgcgcaa tgttgcaaca
    15301 ggatcgctta caaaaagatt gggtattaaa gacggcacag ttttgccttt tgctttggtg
    15361 gaattttgtc ttaagaacga tgagttagga gatcctttta tcaatgatga gcattgtttg
    15421 attttaaatt tagtacaaaa tgaagcacag attaaagaaa ttaaagaaat ggctaaaaaa
    15481 atcaatgcga ttttaactcc tttttttgat gctaaaaatt taagacttat tgactttaaa
    15541 attgagctag gtttaactaa agacaatgag cttgttttag ccgatgaaat cagtcctgat
    15601 agctgtagat tttgggataa atttagcaat gaaaagctag acaaagatag atttcgtcaa
    15661 gatttaggaa atgttaaaat ggcctatgaa gaagttttaa aaagaatttt aaactaagga
    15721 atatcatgaa aatacttgtc aatgtttttt taaaaaatgg tgttttagat cctcaaggaa
    15781 aagctataga aaaggcttta cattctttaa attttaatga aatcaaagaa gtaagagtag
    15841 ccaaacaaat cgtgcttgat ttagatgaga gtgatgaaca aaaagcaaaa gaacgcgtga
    15901 aaagtatgtg tgaagagctt ttggtaaata gtgtaatcga agattatgag cttattgtaa
    15961 gtgagaaatg atgaaagttg ctattattag atttcctgga acaaactgcg aatttgatac
    16021 ccaatatgct tttgaaaaac ttggtgtaaa agcacaaatc atttggcatg aagaaaaaga
    16081 aattgatgca gacttagtgg ttttgcctgg aggattttcg tatggagatt atctaagatg
    16141 tgcagccatt gctaaaatcg ctcctgctat gcaaggtgtt atcgcacatg cgaaaagagg
    16201 aggatatatt ttaggaattt gcaatggctt tcaaatcttg cttgaaagtg gacttttaga
    16261 aggtgctatg aagcacaata ataatttaag ctttatctcc aaaaatcaaa atttaagagt
    16321 tgtttcaaat gataatgttt ttttaaagaa ttttcaaaaa gatgaaatta tcaatcttcc
    16381 tgttgctcat ggtgaaggaa attattatgc agatgaagct accttgaaaa aaatgcaaga
    16441 taaagattta attcttttaa aatacgaacc aaatcctaat ggctctgtgt tggatatcgc
    16501 aggaatttgt gatgaaaata aaaaaatttt tggccttatg cctcatccag agcgcgcttg
    16561 cgataaaata ttaggtaatg atataggctt aagaatgctc gaaggtttta tgtgagaata
    16621 atattttttt tagtttttgt ttgtctgagt ctttttgctc gaagtgaaat ttctgttttt
    16681 gatggtcaag atgaaaatat gcaaagagaa ttgcaaaaac ttccaaaaga ggaacagcaa
    16741 atctatcaaa atatcgctcc aagtgatgaa aattccgatt ttgatagtaa tatatatgat
    16801 ccttttatac ctcaaagttc attagttctt actactgatg attatgttaa taaagtatat
    16861 gttggagaag tatttcccat agttcttcat gctaagatta cagaggatac aaattttgat
    16921 tttaacatca ctttgcaaaa aagcaaggac ttgatctttt taaatcctga tttaaaatgg
    16981 gaatatatta aaggcgatta tagggctgtt ttgtggtttg aggctaaaac ttcaaatgca
    17041 aatttagaac agatttcagt cagcctttta agaaatggaa aaatttttca aagtgctagt
    17101 attagtatag gtgctatcca ttttgaaaat acacctaata ataaaaattt ttcacatctt
    17161 gtggcaagtt ccttggaggt taaaaaaatc aaaaccagtt attttgatga ttcaagcatt
    17221 attacaatga ttgaactaag cgccacaaat gcaaatctta agagcttttt tgtaaatgga
    17281 gtcgagaaac agggtattga aaatttaaag ggtgatttta attcttctaa tgctttttat
    17341 tatgctattt ttccatcgac taaaacagat tttgaatttt cttattttaa caaagatact
    17401 aaaaaaatgg aaaatatgag ctttaagctt aaaatcagcg atgatgaggt gagcactcaa
    17461 agcgatttaa atcctacaaa tagggatttt aatatttata aacaatatgc tctttgggct
    17521 ttgactctta ttttggcatt atggtttgtt tggaagaaaa attattttat tttagcagga
    17581 gcgcttttat gttttatact tggttttctt gtagatacta acacagaaaa tgcaatttta
    17641 aaagcgggtt ctagggctaa aattttacca actgaatcat caacttattt ttatacagca
    17701 aattctaacg aaaaggttga ggtgttaggc aaaagacttc attatgttaa agtgcttttt
    17761 cgcgatgata agataggatg ggttgaaagt agtgatttac aaaaaaatta aagctttata
    17821 tttttggctc ttttttatta taagcgtagc ttttgttgtg ctatgttttt gttttatgaa
    17881 atctcaagat acgctttgga aacttcgaaa atcttgggct agatttcaaa aaaatattct
    17941 tttttgcaaa tatgaagtca taggggaatt tgatcttaaa gcaaatatga ttttaatgaa
    18001 tcatcaaagt accttagata tcatagcttt agaggatttg tatcctaaaa atttatgttg
    18061 gattgccaaa aaagaattag gcgaaattcc tctttttaaa attgccatta aaaaacctaa
    18121 acttctttgc atagatagaa aaaatccacg cgatttggtg cgtgttttaa aagaagctaa
    18181 acaaaggctt agtgaagata gagttttggc gatttttcct gaaggaacgc gttctaggaa
    18241 tgaaaaattg cttaaatttc aaagtggtgc taaaatttta agtgaaaagc ttgatttaaa
    18301 agtgcagcct attttgattg ttgattctgc gaaaatttta gacactaaaa gttttagtgc
    18361 tagttctgga gtattgaaaa tcatttgcat ggatttagtg gatacgagtg ataaaaaatg
    18421 gcttgaaaat actagaaaaa aaatgcaaga attactagat caagaaagag ctaagctttg
    18481 ctaaatacca ttttagttgt tggtcttggg ggttttatag gggcggtttt aagaatgctt
    18541 tctatcaatt tgataaataa aattttaccc cattctataa gctttggtac tctttttgtt
    18601 aatgtcttag gatcttttat gatgaggctt ttgttttctt atgcacatca taagggttta
    18661 tctcctgcgc tcaaaagctt tataagtaca ggatttttag gagcttttac aactttttct
    18721 acattttctt atgaaaattt actgctttta caaagtgga
//
LOCUS       DBBXRO010000024        18648 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.024, whole genome shotgun sequence.
ACCESSION   DBBXRO010000024 DBBXRO010000000
VERSION     DBBXRO010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18648
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.024"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            9..1007
                     /gene="cadF"
                     /locus_tag="ACJFEZ_000598"
     CDS             9..1007
                     /gene="cadF"
                     /locus_tag="ACJFEZ_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HGG0916738.1"
                     /translation="MRKLLLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLELGLEHYSDVKYTNSTLTTDITRTYLSAIKGIDLGEKFYF
                     YGLAGVGYEDFSKGAFDNKSGGFGHYGAGLKFRLSDSLALRLETRDQISFHDADHSWV
                     STLGISFGFGAKQEKVVVEQTKEVVNKPQVVTPAPAPVVSQSKCPEEPREGALLDENG
                     CEKTIYLEGHFDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDNIGSRSYNQK
                     LSERRANSVAKELEKFGVDKSRIQTVGYGQDKPRSSNETKEGRADNRRVEAKFILN"
     gene            1007..1645
                     /locus_tag="ACJFEZ_000599"
     CDS             1007..1645
                     /locus_tag="ACJFEZ_000599"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0916739.1"
                     /translation="MKKTILFDLDGTLIDSTDAILNSFQGAFKILGLTPKNNEEIKNL
                     IGHPLEHMFKILYHEKAHLSQEFVLAYREIYSQIYLEQTTLLPKAKEALELAFEIADL
                     GIVTTKGGKFTPLLLEHLGVKKFFKTLITLEDVTNPKPHAEPILLALEKMQKTKENAY
                     MIGDTILDIQAAMAANITPLALSCGYGDEDELKRYSMVFPSAYKSVLYIKND"
     gene            1749..5309
                     /gene="nifJ"
                     /locus_tag="ACJFEZ_000600"
     CDS             1749..5309
                     /gene="nifJ"
                     /locus_tag="ACJFEZ_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HGG0916740.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGTVHGSLQTGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLCA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYEHFDRLLDRKALLEFRNSALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPERIVIAM
                     GSVTQTLEEVVDHLNSKGEKVGIVKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDIKSAFYGKENAPIIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLQTGEKISLGDESAIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPSWKNLE
                     IKEKEQINAYKGTEFVEKIVKPMNAAKGDELPVSTFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKESTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIIANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRYRIENIMNENMQKVPNALA
                     ALFKEWIANKDKGAESVEIKDKMIPILEQNTDIKAVQDILNLKHFLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYSHLIKAIMAAEAYDGPSLIICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTMVGKEPDWDLYESFLMNEVRYNSL
                     KKSNPEHAKELFERNKKDAQRRYRQLKRIAMADFSDEVES"
     gene            5333..5644
                     /locus_tag="ACJFEZ_000601"
     CDS             5333..5644
                     /locus_tag="ACJFEZ_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HGG0916741.1"
                     /translation="MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKD
                     IKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKEIILRYDTLDFKIAFKNNDKINI
                     Y"
     gene            5622..7040
                     /gene="mshL"
                     /locus_tag="ACJFEZ_000602"
     CDS             5622..7040
                     /gene="mshL"
                     /locus_tag="ACJFEZ_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HGG0916742.1"
                     /translation="MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELA
                     SYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIFKLFIEEQDLAYKFDGKILKISA
                     LQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
                     EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVII
                     DVSILAVNLNKNHSSGINWQNFNIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNF
                     DSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESSKGTENGTTVSESY
                     SNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKL
                     SSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFII
                     TPSIVDNTHIPSLRELGFKYNE"
     gene            7033..7629
                     /locus_tag="ACJFEZ_000603"
     CDS             7033..7629
                     /locus_tag="ACJFEZ_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0916743.1"
                     /translation="MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLAL
                     YHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGMYSPNVLELIRIYSDEMSFVLSS
                     HKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
                     RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK"
     gene            7626..8222
                     /locus_tag="ACJFEZ_000604"
     CDS             7626..8222
                     /locus_tag="ACJFEZ_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDC27 family protein"
                     /protein_id="HGG0916744.1"
                     /translation="MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQ
                     DFYKQKALALEALEYKKTLNWQITQAQIANEKNKILQERLSKDESKDELEEELKTQID
                     IYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
                     VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD"
     gene            8215..9777
                     /locus_tag="ACJFEZ_000605"
     CDS             8215..9777
                     /locus_tag="ACJFEZ_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HGG0916745.1"
                     /translation="MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYS
                     TLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIASSKPCSLELLDEIRIFYEVKNI
                     EVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
                     EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKA
                     QDGNFELKIKENRYDFRISSLPLQNGESIVIRILKHNEEILDLENLNLGEKNLTILKK
                     ALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPIEYKMPLIQQILLNP
                     KAGLEFNNALRAILRQDPDIIMVGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTI
                     DRLIDMSAKPYLIASALRLVIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHH
                     SGYQGRELISECLYIDEEIAQVIREGGYKNKILELAKVKGFQSMFEQGLQKAKEGITS
                     IDELLRVLNEAL"
     gene            9764..10939
                     /locus_tag="ACJFEZ_000606"
     CDS             9764..10939
                     /locus_tag="ACJFEZ_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HGG0916746.1"
                     /translation="MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQ
                     KASFKRLDDARFILFFQELSLLCEVGISIKDALKELDKIYSHKMIAKLCDNLNLGQNL
                     SLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
                     VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIAL
                     ILFLTLFLYRKYYFFSYFCDSLLLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEA
                     FKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLVFSMLSIAMKSSKLE
                     FLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF"
     gene            complement(10936..11700)
                     /locus_tag="ACJFEZ_000607"
     CDS             complement(10936..11700)
                     /locus_tag="ACJFEZ_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HGG0916747.1"
                     /translation="MGFEHLDTIYYFVLFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAYGIFFTALGAAIGSYSVLFVKDEH
                     LKLIILIFLTLTFLYTALRPSLGKHESEAKIKNIKFFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMKKASINTKILNFTSNVVALFIFLWQYELLWIVGLLMGVGQILGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(11703..12467)
                     /locus_tag="ACJFEZ_000608"
     CDS             complement(11703..12467)
                     /locus_tag="ACJFEZ_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HGG0916748.1"
                     /translation="MKNFTPLKNKLDSLVEEKNTNKALFESPDPLQVAKFHNDEFIAL
                     LCALFAYGNAKNIVNFLKKLDFSLLDLSQKQIQKELKNLKYRFQNEKDIQEIFLTFAR
                     LKNEISLHELFSTAYQKRENTTDAILAFLQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHTHKISLTLGLLKRKIYDYKSV
                     LELTHNLKRLDANDPIKYDFALYRLGQNKELSKLKE"
     gene            complement(12484..14310)
                     /gene="flgK"
                     /locus_tag="ACJFEZ_000609"
     CDS             complement(12484..14310)
                     /gene="flgK"
                     /locus_tag="ACJFEZ_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HGG0916749.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTTVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGVNFHPLKLDYDDKNKAYSIYYET
                     PDEKVRDLTAKINGGQLGAQLDLRGRNYSKSEGKYSDGIIQGYMDSLNTFAKTMINET
                     NNLYASSAKSSVTSDYLPGLTEDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITVD
                     VNTTMEDIMRQITANTDDNGNNNANDDVDNHINASFSYDAKTGDSLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTNASDIKVKDSILNDPSTVRASLNGVDSGNDMANKIIQ
                     LQYDKVNFYNEDGTIDNLTMEEYYRKLTGKIGSDGENNNVVNASNQTLYNSVYSEYQS
                     KSGVNTNEELAALIQWQSSYGAAAKIVTTVDQMLDTLLGLKS"
     gene            complement(14320..14754)
                     /locus_tag="ACJFEZ_000610"
     CDS             complement(14320..14754)
                     /locus_tag="ACJFEZ_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HGG0916750.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            complement(14797..14994)
                     /gene="flgM"
                     /locus_tag="ACJFEZ_000611"
     CDS             complement(14797..14994)
                     /gene="flgM"
                     /locus_tag="ACJFEZ_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HGG0916751.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            complement(15057..15398)
                     /locus_tag="ACJFEZ_000612"
     CDS             complement(15057..15398)
                     /locus_tag="ACJFEZ_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916752.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            complement(15398..16444)
                     /locus_tag="ACJFEZ_000613"
     CDS             complement(15398..16444)
                     /locus_tag="ACJFEZ_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HGG0916753.1"
                     /translation="MRVLIFFLLLMTSVFATQIKDIANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTARPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQDSDLTLSLKVADFKTASDIERILNTIFEEDVARAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYTPQSKVIIDERTGTVIAGVDIEVEPVLITHKDITIKIDP
                     NNNAAAAQNEIDMKDGGFVDPNSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            complement(16507..17196)
                     /locus_tag="ACJFEZ_000614"
     CDS             complement(16507..17196)
                     /locus_tag="ACJFEZ_000614"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HGG0916754.1"
                     /translation="MNNEFISVKDFLQGKKNIHFNDSTQPNKKEKTKKTLPKLYTSIE
                     SGIYKGKKLLLPSLQTTRSTKSIVKKCVFDVLRSDLRNKIFIEAFGGSALMAAEALSN
                     YALKAYAIELDLNAYKIALENAKNIDTNLKVIHANTFEILPKLIEDSKEDIILYLDPP
                     FDIREGFSGIYEKIYNFLEKLKLDALFCIILEHNSKIKTPDNIANFTKIKEKKFGSTS
                     LSFYQKNILEE"
     gene            complement(17189..17572)
                     /locus_tag="ACJFEZ_000615"
     CDS             complement(17189..17572)
                     /locus_tag="ACJFEZ_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916755.1"
                     /translation="MKISLECKDLIIEKALELFLKEHLVMKKDCDFIISDEKISTQKP
                     LFIIAKNSPFLSLPFSKEALMNSLNEFDSALKATAQKLADERRRVLEARIDEIASEFK
                     RDYQSKIDLAISELKDKLVKALMYE"
     gene            complement(17569..18642)
                     /locus_tag="ACJFEZ_000616"
     CDS             complement(17569..18642)
                     /locus_tag="ACJFEZ_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HGG0916756.1"
                     /translation="MKNLELRIFRFDKQKDYEAYYKPYVYNNYENFATLYDLLLQVQN
                     DDIYFDFEKNDKSYIVVNKEFLPLNTPLDILVKKYDFNLIIEPLSTKRSVKDLIINKD
                     DFLEKFKYLAPFANEEDKKLYEKYDYLYYSSEILDFLPEYMGDAVFYLASKMIEKYPD
                     KKIKILKTICDTQKGIFYHLTSKNEDLENTIKNLQKEIIDLKLINEAALEFDLPKINA
                     FDNEIKELGEIKYDFNDFNIACYGFKIKDDIKSKIKAHFISYENSDKNNGFSLLQLNP
                     ELSYKMAANIILDAYDSGADFMVVNQAKDFYMFDTCSKKLMQSSGREFKDFYVLSYFE
                     FLSLIQGIKNPSLQNHDLKVSLI"
BASE COUNT         6276 a         2756 c         3155 g         6461 t
ORIGIN      
        1 ggcttttgat gagaaagtta ttgctatgtt tagggttggc aagcgtttta tttggtgcag
       61 ataacaatgt aaaatttgaa atcactccta ctttgaatta caattatttt gaaggtaatt
      121 tagatatgga taatcgctat gcaccaggga ttagactagg gtatcatttt gatgattttt
      181 ggcttgatca attagaacta ggtttagaac attactcgga tgtaaaatat acaaattcta
      241 ctcttaccac cgatattact agaacttatt tgagtgctat taaaggcatt gatttaggtg
      301 agaaatttta tttttatggt ttagctggtg tgggatatga ggatttttct aaaggcgctt
      361 ttgataataa aagtggagga tttggccatt atggagcagg tttaaaattt cgccttagtg
      421 attctttagc tttaagactt gaaacaagag atcaaatttc tttccatgat gcagatcata
      481 gttgggtttc aactttgggc attagttttg gttttggcgc taagcaagaa aaagttgtag
      541 tggagcaaac aaaagaagta gttaataaac ctcaagttgt aacccctgct ccagctcctg
      601 tagtctcaca atcaaaatgt cctgaagaac caagagaggg tgctttgttg gatgagaatg
      661 gttgcgaaaa aacaatttat ttagagggac attttgattt tgataaagta aatatcaacc
      721 cagcctttga agaacaaatc aaagaaattg ctcaaatttt agatgaaaat gtaagatatg
      781 atactatttt agagggtcat actgataata taggttctag atcatacaat caaaaacttt
      841 cagaaagacg cgctaacagc gttgcaaaag agcttgaaaa attcggtgta gataaaagtc
      901 gtatccagac agttggttat ggtcaagata aacctcgctc aagcaatgag accaaagagg
      961 gtagagcaga taatagaaga gtagaggcta aatttatttt aaattaatga aaaagactat
     1021 tttatttgac ttagatggca ctttgattga ttctactgat gccatcttaa attctttcca
     1081 aggagctttt aaaatccttg gattaactcc aaaaaataac gaagagatta aaaatcttat
     1141 aggccatcct ttagagcata tgtttaaaat tctttaccat gaaaaagcgc atttgagtca
     1201 agaatttgtt ctagcttatc gtgaaattta ttcacagatt tatttagagc agactactct
     1261 tttgcctaag gcaaaagaag ctttagaatt agcttttgaa attgcggact taggtatagt
     1321 aacaactaag ggtggaaaat ttactccctt gttgttagag catttaggag tgaaaaaatt
     1381 ctttaaaact ttaataacac ttgaagatgt aacaaatcca aagcctcatg cagaacccat
     1441 acttttagcc ttagaaaaaa tgcaaaaaac taaagaaaat gcctatatga taggcgatac
     1501 gatcttagat atccaagcag caatggcagc aaatattacc cccttagctt taagttgtgg
     1561 ttatggagat gaagatgagt taaaacgcta ttctatggta tttccaagtg cctataaatc
     1621 ggttttatat ataaaaaatg attaaactaa cttcaagttt ttgttaaacg ccttttaaga
     1681 gaatttatag taaattgata gctaaaaaat tataaaaatt atcaattaat aataaaagga
     1741 aggtttctat gggtaaaatt atgaaaacta tggatggaaa tgaggccgct gcatatgctg
     1801 catacgcctt tactgaagta gccggtattt atcctattac acccagctct cctatggctg
     1861 attatactga tatgtgggca gctgcgggta aaaaaaatct ttttggtgtt ccagtaaaaa
     1921 tcgttgaaat gcaaagtgag gcaggtgcag caggtactgt gcatggatca ctgcaaacag
     1981 gagctttaac cacaacttat acagcttctc aaggtttatt actaaaaatt ccaaatatgt
     2041 ataaaattgc agggcaatta ctcccctgtg taatccatgt ggcagcgcgt tctttagcag
     2101 cgcaagcttt atctatcttt ggtgatcatc aagatattta tgctgcaaga caaattggtt
     2161 ttgctatgct ttgttcgcat tctgtgcaag aaactatgga tttagctgga gttgcacatt
     2221 tatgtgcgat taaaggaaga gtgccatttt tgcatttctt tgatggtttt agaacttcgc
     2281 atgaaattca aaaagttgaa gtaatggatt atgagcattt tgatagattg ttagatcgca
     2341 aagctttgct tgaatttaga aatagtgctt taaatcctga aaaccctaaa acacgcggta
     2401 cggcacaaaa tgatgatatt tattttcaaa caagagaagt aagcaatcgt ttttatgatg
     2461 ctttaccaga tgttgtaaat gaatatatgc aagaaatttc aaaaatcaca ggtagagaat
     2521 ataagccatt tacttattat ggacacaaag aacctgaaag aattgttata gctatgggtt
     2581 ctgtgactca aacccttgaa gaggttgttg atcatcttaa ttctaagggt gaaaaagtag
     2641 ggattgtaaa ggtttattta tatcgtcctt ttagtttaaa atatttcttt gatgttatgc
     2701 caaaatctgt gaaaaaaata gctgttttag atagaactaa agagccagga agtcttggag
     2761 agcctttata tcttgatatt aaatcagctt tctatggtaa agaaaatgct cctattatcg
     2821 taggaggaag atatggactt tcttctaaag atgttgatcc tgcacaaatg atagcggtat
     2881 ttgaaaatct taaacttgat aatccaaaag atggttttac agtgggtatt atcgatgatg
     2941 ttactcatac ttctttgcaa acaggtgaaa aaatttcact aggagatgaa agcgctatag
     3001 aatgtttatt ttatgggcta ggtgcagatg gtactgtggg tgctaataaa aattctatta
     3061 aaatcatcgg agataaaaca gacttttatg cacaagcgta ttttgcttat gattctaaaa
     3121 aatcaggggg ctatacaaga agccatttaa gattttctaa aaaaccaatc cgctcaacct
     3181 atcttgtttc aactccacat ttcatcgctt gttcggtagc ggcttatctt gaaatttatg
     3241 atgttttagc aggaatccga aaaggaggaa ctttcctttt aaatagtatt tggaatgctg
     3301 aagaaactat aagacaactt ccagatgcag ttaagaagac tttggctgaa aaagaagtga
     3361 atttttatat tatcaatgct acaaaacttg ctcgtgatat aggacttgga aatcgcacaa
     3421 atactattat gcaatctgcc tttttcaaac ttgcaaaaat cattccttat gaagatgctc
     3481 aaaaatatat gaaagaatta gcttataagt cttatagcaa aaaaggcgat gctattgtag
     3541 agatgaatta caaagctatt gatgtaggag cagatggact tgtaaaagta gaagttgatc
     3601 caagttggaa aaatttagaa atcaaagaaa aagaacaaat caatgcttac aagggtactg
     3661 aatttgttga aaagatcgtt aaacctatga atgcagcaaa aggagatgaa ttacctgtat
     3721 ctactttctt aggttatgaa gatggaagct ttgagcatgg aacgaccgaa tacgaaaaac
     3781 gcggcgttgg ggtaatggta ccaagatgga tagaggctaa ttgtatccaa tgtaatcaat
     3841 gtgcttctgt atgtccgcac gcggttatta gaccattttt aatcaatgat gaagaaatgg
     3901 ctaaagctcc aagaggagta aaagatcacg ctttagaagc taagggtact aaaggtgaaa
     3961 aattgagctt caaaattcag gtttctccac ttgattgtac gggctgtgag ctttgtgtgc
     4021 atgagtgtcc tactaaggaa aaatctttgg ttatggttcc tcttcaagaa gaaatggatt
     4081 ttggtgagca agaaaatgca gattatttat ttaaagaaat tacttacaaa gatgatattt
     4141 taaataaaga aagcaccaaa ggggctcagt ttgctcaacc tttatttgaa ttccatggag
     4201 catgtccagg ttgtggtgaa actccttata ttactttgat tactagatta tttggtgaaa
     4261 gaatgattat cgctaatgct acgggatgta gttcgattta tggaggttca gctccttcta
     4321 ctccttatag aaaaagcgtg aaaaatggac atggccctgc ttgggggaat tcattgtttg
     4381 aagataatgc cgaatttggt ttgggtatga aaattgcaac tgaaaataca agatatcgca
     4441 ttgaaaatat tatgaatgaa aatatgcaaa aagtacctaa tgctttagca gcattgttta
     4501 aagaatggat tgctaataaa gacaaaggtg cagaatcggt agaaatcaaa gataagatga
     4561 tacctatttt agagcaaaat actgatatta aagctgttca ggatatttta aatttaaaac
     4621 attttttaag taaaaaatct cattggattt ttggtggtga tggctgggct tatgatatag
     4681 gttatggcgg gcttgatcat gttttagcaa gcggtgaaaa tgtaaatatt ttagtacttg
     4741 atacagaagt gtattctaat acagggggcc aaagttcaaa atcttcaaga acaggtgcag
     4801 ttgcgcaatt tgccgcagca ggaaaaccta tacagaaaaa agatttgggt cagattgcta
     4861 tgacttatgg ttatattttt gtagcacaag ttaattctac ggcaaattat agccatttaa
     4921 tcaaagctat tatggcagct gaagcttatg atggtccttc tttgattata tgctattctc
     4981 cttgtatcgc tcatggtatc aagggtgggc ttggatattc aggcgagcaa ggtgaacttg
     5041 ctacaaaatg cggttattgg cctctttata cttttgatcc aagactagaa gaacaaggca
     5101 aaaatccttt aactatggta ggaaaagagc ctgattggga tctttatgaa agctttttaa
     5161 tgaatgaggt gcgttataat tctttgaaaa aatcaaatcc agagcatgca aaagaattat
     5221 ttgagcgcaa taaaaaagat gcacaacgcc gttatagaca gcttaaaaga attgctatgg
     5281 ctgattttag cgatgaggtt gagagctgat aaaatatttt ttaagtataa cattgtgctt
     5341 ttgcactttg ttatcatatg aggattttga agaatatttt aagattttaa acaccaagca
     5401 gaatgtagag cttggaaatc ttcaaaatcc attctttaat cctacttttg aaaaaatcaa
     5461 agacataaaa attattgcta ttatgcttga tagagtaaag attgataata aatggtataa
     5521 aaagggtgat aagatagggg aggccgtgat tactgatatt actacaaaag aaattatttt
     5581 aagatatgat actttggatt ttaaaatagc gtttaaaaac aatgataaga ttaatattta
     5641 ttaagattct attttttacc aatcttattt atgccatgga atgccaaaaa cgcttatttg
     5701 atataaatat caatgaagat ctaagcatag aagaaagcct aaaagaactt gctagttatt
     5761 gctcttttag cgtggtaatt aaagatacaa ttgctaagga aaaactaaaa gccattcaaa
     5821 gcagtatcaa tatccaccaa atgagtttag atgaaatttt taaacttttt atagaagaac
     5881 aggatctagc ttataaattt gatggcaaga ttttaaaaat ttctgctttg caaactagaa
     5941 tttttaaaat caactatatt acttcagtta gagaaggaca aagcataacc aaggcttcgg
     6001 tggattctaa gccaaggcaa agtgagtatt atagcgcttt tgaagataat gaagataata
     6061 tgattaaaag tatggaaaaa tttgactttt ggcaaaatat agaaaaagag attatgattt
     6121 tgcttagctc ctcacatgaa aactatgata taaaagcacc tatagtcaat ccaaatgctg
     6181 ggcttgttat cgttactgga acgcattctc agcttcaacg cgtaaaagct tatttacaaa
     6241 agcttgaaag tcgtcttaaa aaacaagtta ttatagatgt gagtatactt gctgtaaatc
     6301 ttaataaaaa tcattctagt gggatcaatt ggcaaaattt caatatagga ttaaattctc
     6361 aaacgagcga taatacaaat tcttttatgc aaatacaaaa tggtcaaggt tttgttaaaa
     6421 atttgggttt aagagcgaat ttgaattttg attccattgt caatttttta tctcaaagtg
     6481 gaaaaaccag tgttttatct aatcctaaat taatggcttt aaacaatcaa caagccatta
     6541 tttccatagg cgatactgtg aattatcaag taaaagaaag ctctaaaggt actgaaaatg
     6601 gcacaactgt aagtgagagt tatagtaatt attctatttt cataggaatt ttgcttaata
     6661 ttttgcccga aatttctgat gatggaaaaa tcatgcttag gatcaatcca agtctaagcg
     6721 actttaaata cccagaggac aataaaagac aaaaagaacc ccgcactatc gcgcctgata
     6781 caattcaaaa aaagctttca agtgtggtgc aagtagaaaa taatcaaact ttaattttgg
     6841 gcggacttat ctctcataat cgctcacaaa atgataattc tgttaatttt ttatctaaaa
     6901 ttcccatttt gggttcttta tttagaagtg aagatgaaaa ttccaatatc acagaaattg
     6961 tttttatcat caccccaagc atagtagaca atacacatat acctagtctt agggagttag
     7021 gatttaaata caatgaataa tataattgct tttagacaag aatgttttga tcaaatcaat
     7081 gccttattaa aaaataaagc tttgatttta ctttggggta aaagcggtag tgggaaaagt
     7141 gttttattgc aaagacttgc gctatatcat aatgaagatt ttaccaatga aatttttaca
     7201 gatgaaaaag attttcatca ttttatacaa gataaaaaac gaaaaattat catactagat
     7261 gaagtgggga tgtatagtcc taatgtatta gaactaattc ggatttatag cgatgaaatg
     7321 agttttgtgc ttagctcgca taaaaaaatc aatctttttg aagaggagta ttttaaaagt
     7381 cgttttagtg ctattttttg gcttcaaaaa cctgatataa atgaattaag caattatatc
     7441 aaaatgaaat ttaatcaaga ctttccccaa aaatctttaa aatttcttat gaaaatttat
     7501 caaggaaatt taaggtattt agacaagata cttcaaagtt tttgcgaatt aaacacctat
     7561 ttaaacaata aaaaaagtca agattatatt ttaagactaa gcgcattaga gcagggattt
     7621 ttaaaatgaa tatagaagaa agagtgcgcg agcttgagga taaatataaa agatatttat
     7681 tgaaaaaata ttttaagttt ttatttatct ttgccatttt gatagcatgc atgcttataa
     7741 gcttttttat ggtgcaagat ttttacaaac aaaaggcctt agctttagaa gctttagaat
     7801 ataaaaaaac actcaattgg caaattacac aagcgcaaat tgcaaatgaa aaaaataaaa
     7861 ttttacaaga aagattatcc aaagatgaaa gcaaagatga gttagaagag gagttgaaaa
     7921 ctcaaattga tatttattct aagattttaa atataagtga tttaaaaagg agtttttacc
     7981 aaaatccaag ctatcaaaaa gccatgaatt tagctactca gtattatgaa aacaaagatt
     8041 atgaaaagtc tattttttgg tctttaaaag ccaatgacat cgatagaaaa aattcagact
     8101 catgggtttt atttgccaag gctaaacaag ctttaggaaa agatgaggag gctaagcaag
     8161 ctttggatac ttatgtaagt tattatggct tgattgaatt tgataaggag atagatgatt
     8221 gagcgatttt tatttgaaga ttatattaat ggtaaaatca cccttgagca aattgatcgt
     8281 gagcataaaa tcgatagtga aatttttcta aaagctttgg ctagtgataa aaatatttct
     8341 tattctactt tagaggaact tgatcttagt ttgggtgaaa aatttccatg tagttttctt
     8401 tttaaattta aaatcttgcc cattttaagt aaagaaaata cacttcatat agcaagctcc
     8461 aaaccttgtt ctttagagct tttagatgag attagaattt tttatgaagt taagaatata
     8521 gaagttttga tcgcaagcga atttaagatt atgaaatttt tatataaact tcaagttaga
     8581 gaaaaactta aaaatttaag caccaatctt agattagaat ggaaagaaaa tagaagtcaa
     8641 gatgagcaaa gttgtatcag tcaaattttt gattttatac tcgatgaaat tcttgaattt
     8701 aatcctagcg atatacatat agaagcaaga gaaaatgata ctttgataag atttagagta
     8761 gatggaattt tacgcgaatt tgcttgtctt gaaaaagata tttatgaggc tttggttttt
     8821 catattaaat ttttatcgca gcttaatgtt gcagaatcaa gaaaggctca agatggaaat
     8881 tttgagctta aaatcaaaga aaatagatat gattttagga tttcatcttt gcctttgcaa
     8941 aatggcgaaa gcattgtgat aagaatttta aaacacaacg aagaaatttt ggatttagaa
     9001 aatttaaatt tgggcgaaaa aaatcttaca attctaaaaa aagccctata caacccttat
     9061 ggaatgattt tactaacagg tcctacagga agtggaaaaa gtacaagttt atatgcttgt
     9121 ttaaatgagc taaaaagcat agaaaagaaa ataatttctg tggaagatcc tatagaatat
     9181 aaaatgcctt taattcagca aattttgcta aatccaaaag caggacttga atttaataat
     9241 gccctaagag ccattttaag acaagatcct gatattatca tggtaggaga aatcagagat
     9301 gaggagagcc ttgatatagc gattaaggct tccttaacgg ggcacttgct tttaagtact
     9361 ttgcatacaa ataatgccat ttctaccata gatagattaa ttgacatgag tgcaaagcct
     9421 tatttgatcg cttctgcttt aaggcttgtc attgcccagc gtttagtgcg caagctttgt
     9481 cctaaatgca agcaaaaaag cactaaggtt tatgaaataa aaggtgattt ttttgaagct
     9541 aaaggctgcg agtattgtca tcatagtgga tatcaaggta gagaactcat cagtgagtgt
     9601 ttatatatcg atgaggaaat agctcaagtt attagagagg gtggttataa aaataaaatt
     9661 ctagagcttg ctaaagtaaa gggttttcaa agtatgtttg agcaaggttt gcaaaaagca
     9721 aaagagggta taactagcat agatgagctt ttaagggtac ttaatgaagc tttatgagct
     9781 cgagattaaa ggcaaaacaa aacagacaaa gcatttaagg gctaaaaatt taaacgaagc
     9841 tcaagcaaaa gctatcgcta aaaaatggga aattttaaat atcaaagaga tacaaaaagc
     9901 aagttttaaa agattagatg atgcaagatt tatccttttc tttcaagaat tatctttgct
     9961 ttgcgaagta ggaatcagca taaaagatgc tttaaaggag cttgataaaa tatattctca
    10021 caagatgatt gccaagcttt gcgataattt aaatttagga caaaatttaa gccttgcttt
    10081 tgaaaatgca aattttggac ttactcatgc ggaattagcc cttattaaaa cttcccaaaa
    10141 cacaggaaaa ttaagtgaaa ttttcatgca aatttcaaga ttaagacaaa ataatgtaga
    10201 aaatgaacaa agagtcaaaa aagctttaag atatcctttg attgtttttt taagtgtgtg
    10261 cgcggctttt gttttactca tgctttttgt tgtgcctaat tttaaagatt tatttgagga
    10321 tttaaattta gccttaccct ttataaccga gcttataatt tatatttata attttttgga
    10381 taagtatatt ttgcttgtgt tttgtttgat cgcacttatt ttatttctta ctttattttt
    10441 gtatagaaaa tattatttct tttcatattt ttgtgatagc ttgcttttaa aacttccttt
    10501 gttgtctaaa tttattattt atcagcaaaa ttattctttt tttatgattt tctctttact
    10561 tttaaaaagc ggcatttctc ttttggaagc ttttaaatta gccactttgg ccttaaataa
    10621 taaaaaggta ttattgtatt atcaagaaat tagaacattt atggattctg gccttgaaat
    10681 aagtcacgcc tttaaaaaag tagatctttt tgatcctttg gttttttcta tgttgagtat
    10741 agctatgaaa agttctaagc ttgagttttt gagcgaggag attgcgaaat attataaaaa
    10801 caaaagtgaa aatttaatgg acaagttttt aagcttttta gaacctataa tgactttatg
    10861 ggttgcgatt ttagtattgt ttttagcact tggaattttt ttacctatat gggaacttag
    10921 ctcaggagta aatttttaag aaaaataatc ccaagcaacc ttgatgatag tagcacctac
    10981 gacgattaaa aacaaggttt ttataaattt gccattggtt ttaagtacta attttgaacc
    11041 aagataggcc cctaaaattt gtcctacacc cataagcaaa cctactatcc ataaaagttc
    11101 atattgccac aaaaagataa aaagagcaac gacattgctg gtgaaattta gaatttttgt
    11161 attaatactt gcttttttca tattaaaacc cagtagcatt acgcaagcaa aaatccaaaa
    11221 tgaacccgtc ccaggcccta aaaaaccatc ataaaaaccc aaagttaaac cacaaattaa
    11281 atgaaaaaat ttgatatttt ttatctttgc ttcactctcg tgtttaccca aactaggacg
    11341 caaagcagtg tataaaaaag tcaaagttaa gaaaatcaaa atgataagtt ttaaatgctc
    11401 atcttttaca aaaagcacgc tgtaacttcc tatggctgcg cctaaggctg tgaaaaaaat
    11461 accataagca agatgaggta gggtggttga tttaaaataa gttaaagtcg ctgtaaaaga
    11521 gccaaagaca ctttggagtt tattggttgc caaagaaaga tgtgcaggaa ttccacaggc
    11581 tataagcgca ggaagtgtga taagcccacc tccacccaca atagaatcaa taaatcctgc
    11641 aaaaagagct acaaaaaaca atacaaaata ataaatcgta tctagatgtt caaagcccat
    11701 ttttactcct ttagtttgct aagttcttta ttttgcccca aacgataaag cgcaaagtca
    11761 tattttatag gatcatttgc atccaatctt tttaaattat gcgtgagttc taaaacgctt
    11821 ttatagtcgt atattttacg ctttagaaga cctaaagtca aggaaatttt atgtgtatgt
    11881 gtatcaagag ggattaaaag atctttggtg tgaattttgg taaaaagtcc aagatcaagc
    11941 tcatcttttc taaccatcca tcttagatac atattataac gcttaagagg tgaagtaggg
    12001 gtattttgcc aaattttacc aaagaaaaaa tcataaccat aactcgaata cgaatttaaa
    12061 gtcttgattt tttgcaaaaa agctaggatt gcatcggtgg tattttctct tttttgatag
    12121 gctgtactaa aaagttcatg gagtgaaatt tcatttttaa gccttgcaaa agtgagaaaa
    12181 atttcttgta tatccttttc attttgaaag cgatatttta aatttttaag ttctttttga
    12241 atttgttttt ggcttaaatc aagcaaagaa aaatcaagtt tttttaaaaa attgactata
    12301 tttttagcat tcccataagc aaataaagca caaagtaaag cgataaattc atcattatga
    12361 aatttagcaa cttgcaaagg atcaggactt tcaaaaagag ctttgttggt atttttttct
    12421 tcgaccaaag aatcaagttt gtttttaagt ggagtaaaat ttttcactag ataccgctag
    12481 agcttaggat ttaagcccta ataaggtatc tagcatttga tctactgtgg ttacgatttt
    12541 tgctgcagca ccatagcttg attgccattg tatgagagcg gctaattctt cgttggtatt
    12601 taccccgctt ttagattgat attcgctata aacggagtta taaagcgttt gattactcgc
    12661 atttacaaca ttattgtttt caccatcaga gcctatttta cccgtaagct tgcggtaata
    12721 ctcttccata gtaagattat caattgttcc atcttcattg taaaaattca ctttatcata
    12781 ttgaagttgt atgattttat ttgccatatc atttccacta tcaacaccgt ttaggcttgc
    12841 tcttactgtg cttggatcat ttaagataga atcttttact ttgatatcgc tagcattagt
    12901 tccgctaaaa aatcctccta tgctaaatgc accggcaaaa ttggttccct tatcttctat
    12961 ggctacttta aagcctgatt ttgcattgat ttgaaataaa ctatcccctg tttttgcatc
    13021 atagctaaaa cttgcattga tatgattatc aacatcatca tttgcattat tgttgccatt
    13081 atcatctgtg ttagcagtga tttgacgcat gatatcttcc atagtggtat ttacatcaac
    13141 ggtaatggtt tttgtaagtt ttttatcgcc cttatcatca taaataacta tatcaaaact
    13201 tccaggctgt atggttctat cataatttac caaaggaatg tcctctgtaa gtcctggaag
    13261 ataatcagaa gttactgagc tttttgctga gcttgcgtaa agattattgg tttcattgat
    13321 catggttttt gcaaaggtat ttaaagaatc catatagcct tgaatgattc catcgctata
    13381 ttttccttcg cttttgctat aatttcttcc gcgtaagtca agttgagctc caagttgtcc
    13441 accgttaatt tttgcagtta gatcgcgaac tttttcatct ggagtttcat aataaatgct
    13501 ataagcttta tttttatcat cataatcaag ttttaaagga tgaaaattaa caccatctac
    13561 tatactaaaa ccttctatgc tgagattgta ttgatgtcct ggatcagtga tggttgtatc
    13621 aaggcgattg tcttgattga tttcattttt gcttgcaact gcactaacta gctttgaaag
    13681 agtaagctca agttcatctc ttctatccct aagttcattt gcgtgttctg ttggtaaggc
    13741 ttcttgtcca taaatttgtt tatttatagt agcaatttct tcgccaattc tattaatctc
    13801 atcaactgta tttttaatat catcatttac ttttttttgg attttatcta aggtagcaaa
    13861 ggtattattt acactttctg tcaaggtttg agaagctttt acaagggcta ttttggtggc
    13921 attttcattt ggatttgaag caaagtcatt ccatgcttta ttgtaatttt ctaaatcttg
    13981 caaaattcca gtattttgta agtcgggaaa acgctgcgca atttcttgta aagtggaagc
    14041 catatattta gtatattcta gttgagtaga tgcacctttt aatttatagt aagaatactc
    14101 atcatgcaaa cgcactatac tttctacagt agttcctgta cctacttgaa ctccacctgt
    14161 ggtaatatac ccatttgtag tttgcaccac tctttggcgt gtataaaaag ttgcattagc
    14221 atttgagata ttatttccag ttgttgcgat ttgaacttcg cttgccttta agcctgtaac
    14281 acctgtgtat aatgttccaa aaatacccat tataaatcct tatacattga tcttgaaaat
    14341 tgactctgga tttgtctttt tatctccata agcattattt gttccatcat tgatatcaaa
    14401 cattttattt actaagccat caagaaaatc tttgacaata agaacaaatt tagcatactc
    14461 tttgttttta ctatgaaggt tttgaagatt ttttttaagt agatctagtt tttgtttatc
    14521 ttcatcatct aagagttcac taagcccttt tgtagagcta ttatttagct caaccaaggc
    14581 aacatcaagt tgttttttag ctgtaataaa ttccgcgata agtttgtttt tttcttctac
    14641 acttggcgtt acactctcat gtttagccac tttgatattt tctatatctt cttcggttaa
    14701 agcgataagt tttgctaaga tagcatttac ttcatcaagt ctttgtttaa gcatattttc
    14761 tccttttctc tctcaaaaaa aggagaatga aggtttttag attaaagagt cagcaatcgc
    14821 agcagccgta gcttttgtat cgattttata agtaccattt ttaatctgct ctgcgatttt
    14881 actcgcttta tcattttccg ttttttgagt atcgtttgtt ttagtttctt tatctattct
    14941 atttgtattt aatgcggtat ttgccacata actttgttgt ataggattga tcatttctgc
    15001 ctccttgatc ttagttataa tcctctacaa accatatcga cctaaattta aaaaacttaa
    15061 cccctttctt ttaaaaaatc gtataataat tttgaaaaac ccatacctcc acttaaagct
    15121 ttactcatgg tatcattata catggaagag tatatttcat cgctggcatc ttttccaaag
    15181 agtgaatttt gactttttaa agatacatct aaaacttgct ttaaaaaaaa tgcctcaaaa
    15241 gcatccgttt gttcttttaa ggcttcatct tctttgctct ttgtaactat atcattgtca
    15301 tttattttga tgcttgattc taaacttctt gctttggctg cacgatcaag taaagcgcta
    15361 ttcatactat aagtatttaa aaaattatcc actttcatta gatgatctcc aaatccgcgt
    15421 taattgcacc tgcgcgcttt aaattttcca tgatagcaat gatatcattt ggcgttgctc
    15481 caagtttgtt tagcattcta gcaatgtttg caactgtgct tttagcattg ttgattctta
    15541 gggtatttga attagggtct acaaagccac catctttcat atcgatctca ttttgagctg
    15601 ctgctgcatt attgtttgga tcaattttta tggtaatatc tttatgggtg attaaaacag
    15661 gctcaacctc aatatccact cctgcaatca ccgttcctgt tctttcatcg ataattacct
    15721 tactttgagg agtataagca atatcttgct ctaaaactct tgccataaaa tcaacattag
    15781 aaagatcttc aggtttttta agttttaccg tacgagaatc aatagctcta gccacatctt
    15841 cttcaaatat agtatttaaa attctttcta tatcgcttgc tgttttaaaa tctgctactt
    15901 ttaagcttag ggttaaatca ctatcttggc taaaattttg cggaatttct ctttctacat
    15961 tagcaccacc catcacagta gcagcagtag agtgagagcc tgctcctcct ggtctagcag
    16021 ttaatcctcc tgttgagata gaaccttgtg caatagcata aatttcccca tcgattccac
    16081 gaagtgcggt aagcaagagt gttccacctt gcaaagattt tgcatcgccc atagatgaaa
    16141 ctgtgatatc gagcttatct ccactttttg caaaggctgg aagtttagct gttaccataa
    16201 ctgctgctgt gttttttgat ttgatatcgt taggatctac tttgatattc ataccctgca
    16261 aaagattgga tatggattgt agtgtaaatt tcgagcttgt tccatctccg ctaccattta
    16321 atcctacaac aagaccataa cctatgagct gattatctct tacgcctacg gtattggcta
    16381 tatcttttat ttgtgttgca aaaacacttg tcatcaaaag taaaaaaaat attaaaaccc
    16441 tcatcgattc ttcctttaat ctgatagtta gaataaaaga agcaataagt gttccaagat
    16501 taaaatttat tcttctagaa tatttttttg ataaaaacta agactagttg atccgaattt
    16561 tttttctttt attttggtaa aatttgctat attatcagga gttttgattt tagaattatg
    16621 ttctaaaatg atacaaaata aagcatctaa ttttaatttt tctaaaaaat tataaatttt
    16681 ttcataaatt ccactaaaac cctcccttat atcaaaaggc ggatcaagat ataaaatgat
    16741 atcttcttta gaatcttcta taagtttagg cagtatttca aaagtattag catgaattac
    16801 ttttaagttt gtatctatat ttttagcatt ttctaaagcg attttataag cgtttaaatc
    16861 aagttctata gcataagctt taagagcgta attgcttaaa gcttcagcag ccattaaagc
    16921 acttcctcca aaagcttcga taaaaatttt atttcttaaa tctgatctta agacatcaaa
    16981 aacacatttt tttacgatac ttttagtgct tcttgtggtt tgaagactag gtaaaagcag
    17041 ttttttaccc ttatatatgc cactttctat gcttgtatat aatttaggca aggttttttt
    17101 ggttttttct tttttattgg gctgggtaga gtcgttaaaa tggatatttt tcttaccttg
    17161 taaaaaatcc ttaacgctta taaattcatt attcatacat taaagcttta accagtttat
    17221 ctttaagctc gctgatagca agatctatct tgctttgata gtctctttta aattcacttg
    17281 cgatttcatc tatccttgct tctagcactc ttcttctttc atcggctagt ttttgagctg
    17341 ttgcttttag cgcgctatcg aattcattta aggaattcat gagagcttct ttgctaaaag
    17401 gcaaacttaa aaagggtgaa tttttagcga tgataaataa aggcttttga gtagagattt
    17461 tttcatcgct tatgataaaa tcgcagtcct ttttcatcac taaatgctct tttaaaaaaa
    17521 gctctaaggc tttttcgatg atcaaatctt tacattctaa agaaattttc atatcaaact
    17581 tactttcaag tcatgatttt gcaaagaagg atttttaatg ccttggatta aagaaaggaa
    17641 ttcaaaataa cttaaaacat aaaaatcctt aaattctctt ccactacttt gcataagttt
    17701 tttcgagcaa gtgtcaaaca tataaaaatc ttttgcttga tttaccacca taaaatcagc
    17761 accactatcg taagcatcaa ggatgatatt tgctgccatt ttatagctaa gttcagggtt
    17821 tagttgaagt agtgaaaatc cattgttttt atcgctattt tcataagaga taaaatgagc
    17881 tttgattttt gattttatat catctttgat cttaaaacca taacatgcga tattaaaatc
    17941 attaaaatca tatttaattt caccaagttc tttgatttca ttatcaaaag cattgatttt
    18001 tggcaagtca aattccaaag ccgcttcgtt gataagtttt aaatctatga tttctttttg
    18061 taaatttttg atagtatttt ctaaatcttc atttttactt gtaagatgat aaaagatgcc
    18121 tttttgcgta tcgcaaattg tctttaaaat ttttattttt ttatcaggat atttttctat
    18181 catttttgaa gccagataaa acactgcatc gcccatatat tcaggtaaaa agtctaaaat
    18241 ttcgcttgaa taatacaaat aatcatattt ttcataaagc tttttatctt cctcatttgc
    18301 aaatggagca aggtatttaa atttttctaa aaaatcatct ttgttgataa tgaggtcttt
    18361 tactgatctt ttggtgctta gtggctctat gatgagatta aaatcgtatt ttttcaccaa
    18421 gatatctaaa ggtgtattta atggtaaaaa ttctttattg actacgatat agcttttatc
    18481 atttttttca aaatcaaaat aaatatcatc attttgcact tgcaaaagta aatcataaag
    18541 agtggcaaaa ttttcataat tattataaac atagggttta taataagcct cataatcttt
    18601 ttgtttatca aatctaaaaa ttctaagttc taaatttttc atgctttt
//
LOCUS       DBBXRO010000025        18455 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.025, whole genome shotgun sequence.
ACCESSION   DBBXRO010000025 DBBXRO010000000
VERSION     DBBXRO010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18455
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.025"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            179..1117
                     /gene="trbB"
                     /locus_tag="ACJFEZ_000617"
     CDS             179..1117
                     /gene="trbB"
                     /locus_tag="ACJFEZ_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer ATPase TrbB"
                     /protein_id="HGG0916757.1"
                     /translation="MSNIEFQARINEKIKREFGDILFYLEDKETIELMLNSDGKLWLE
                     KLGQDMICLGEFSEAKAKSIITAVSTLLDTTTNAENPILECELPLDGSRFEALLPPIV
                     AKPTFTIRKKAVKIFTLGDYVGSNIITPNQKEVLINAIIERQNILVVGGTGSGKTTFS
                     NAIIDGISKITPDHRIVIIEDTAELQCASENKVILRATDKVDMLRLLKATMRLRPDRI
                     IVGETRGKEALDLLKAWNTGHPGGIATIHANSANGGLTRMEQLISEATNAKMSKLIAE
                     AVNLIVFISKSKEGRKVKEIIKVIGYENDKYITQAI"
     gene            1127..1423
                     /locus_tag="ACJFEZ_000618"
     CDS             1127..1423
                     /locus_tag="ACJFEZ_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HGG0916758.1"
                     /translation="MKKFLILFLALGLGYALASTTGAGLPWEGPLEQIKASLSGPVAF
                     IMSILAIIGAGAGLIWGNEFSGFIKTLFYIVIVIALIVGANSFMSLFSTSGALI"
     gene            1423..1710
                     /gene="trbD"
                     /locus_tag="ACJFEZ_000619"
     CDS             1423..1710
                     /gene="trbD"
                     /locus_tag="ACJFEZ_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbD"
                     /protein_id="HGG0916759.1"
                     /translation="MEELQRIDIYSALNKPNLIFGADRELILMVGVISFALIFTGATL
                     LTSIIGIFLFFFCNMLLRLMAKSDPLMRQIFLCQIKYKKFYYAQSTPFSKD"
     gene            1714..4179
                     /locus_tag="ACJFEZ_000620"
     CDS             1714..4179
                     /locus_tag="ACJFEZ_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbE"
                     /protein_id="HGG0916760.1"
                     /translation="MLALKEFRSKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRA
                     GDISSMTINERNTLSARINSVLKTLGNGWAVHIDCSRIKTENYIDGDTFYKSNIAQIL
                     ENERKHYFDNVEHFENLFTMIFTYLPPHKSINKITDLMIIDETKNKNQGDKILEYFKN
                     TLQKLEDSLSNYIKIERMLPRIAIDEYNNEYILDDMLEYINFCICGERQKIILPNAPM
                     FLDCLLGGRHFETGMHPRIDNQYIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFI
                     FLDDFEAQNSLNKYRKKWQQKTKGWLDQLLDRPARKQDDHAVLMVQELDSALSESKSG
                     MIGYGYYTANIVVFDRDYESLEYKLKDIRKVLENLGFLSRTETINSVEAYLGTLPGFV
                     YPNLRRPILNTLNLTHLIPLASIWAGDKYNSSERFPPNSPPLMQVVTSGNTPFRLNLH
                     VSDLGHTLIFGPPGSGKSTLLANIFLAWQKYPNAKIYAFDKGQSLLAPTLATGGIHYD
                     VAGDHSSLAFAPLANIKTDAEIAWAEFWIETCLKLQNVNITPKQKKLIHEALISHINT
                     NSTSLTEFVSALQDSDLRDALNYYTISGTGGFLFDSEEDKLSLSSITTFEIEELMNLG
                     DQYIIPALLYIFNRIEKGLDGSPTLLIIDEAWIALKHPAFKDKIVNWLKVLRKANVAV
                     IMATQSLSDSAKSGILDILQEYCPTKIFLPNPEAYKKGSENVLAPYDFYKIFGLNDVQ
                     ISIINNAIQKREYYYTSPLGTRLFNLALGKTNLAFTTISDKVSVKKVRQLYEKHKENW
                     AYKWLEEKEINYKRFDNSQKEQI"
     gene            4176..4847
                     /locus_tag="ACJFEZ_000621"
     CDS             4176..4847
                     /locus_tag="ACJFEZ_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbM/KikA/MpfK family conjugal transfer protein"
                     /protein_id="HGG0916761.1"
                     /translation="MKNFIFGVKKITLALSATLLISSNAFADDILTGDTKLACEAILC
                     LSSGTRPSECSSSLARYFSIKFKKPWKTINARRAFLNLCPIQNDANIEDLVLNNLVDD
                     VLPVSDPRQCTPNYLNTQVETKRSYSTFGIMSYRINPNMPNFCHTLINHAYTDYKTPK
                     YKCTGEFYNSLEWKLSAKLQLITQQAYESLSDDQRYMISRTCGDRNCYDYYQKIPFTK
                     ECWTY"
     gene            4859..5296
                     /locus_tag="ACJFEZ_000622"
                     /pseudo
     CDS             4859..5296
                     /locus_tag="ACJFEZ_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815581.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
     gene            5302..5856
                     /locus_tag="ACJFEZ_000623"
     CDS             5302..5856
                     /locus_tag="ACJFEZ_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HGG0916762.1"
                     /translation="MSKVILFENEELGQVRTIRDKNNEPLFCLNDICKILNIKKTNSV
                     RDSINKEFDKGGVFEWHPFKTLGGIQKFIVINEPELYFVLMRSDKPKAKPFRQWVIKE
                     VLPSIRKQGYYASNNAPKLENYNKYKIPNTPYKENIIKAIMQTEQNRNCEFEELIAYE
                     IKEIYKDNKSHIEQKINFKVKGLI"
     gene            6444..7232
                     /gene="trbJ"
                     /locus_tag="ACJFEZ_000624"
     CDS             6444..7232
                     /gene="trbJ"
                     /locus_tag="ACJFEZ_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbJ"
                     /protein_id="HGG0916763.1"
                     /translation="MKKSLFGVKKATSTIIATLIIGTNNAFAGGIPVIDVSAIANQVK
                     DYAMQLQQYEQMYSQLQQQIQMVQMQKQNLERLTKEDWDNLGTVLYQTRNVMNKVNGI
                     SYDIGNVSRKFEDTYKNFEGYSNDLENATNESERNKIYSDRYKQIAETNQNTFNGTLQ
                     QLELRYQDLESEDVLIAKLKQNSQNSNGNLQAVQATNDLLAYQIDEIRKLRSVIMDQS
                     NMLTNYLASQNNKQILEQAKMEKLFQRNKNNNFYQSNSDAFKWK"
     gene            7281..7544
                     /locus_tag="ACJFEZ_000625"
     CDS             7281..7544
                     /locus_tag="ACJFEZ_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HGG0916764.1"
                     /translation="MKHFIFSGLIGLGALAFLAGCGDEAKTSDYYKAHLDEAKARVAE
                     CKKMEKMNETQQRDCSNANEAVLFQRDKNNKFYQSSPEAFEWK"
     gene            7531..8718
                     /gene="trbL"
                     /locus_tag="ACJFEZ_000626"
     CDS             7531..8718
                     /gene="trbL"
                     /locus_tag="ACJFEZ_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbL"
                     /protein_id="HGG0916765.1"
                     /translation="MNGSKLALVLFLCFLIPNLAFGAESPEGALTLIKNGLLSWTPLI
                     KTACLWVFWTLVAIDLIWTFGLKALSGFEFGEFLTTLIKKIIYIGIFLFLFNTDQWLQ
                     IIFNSFSQLATNVNNGIDVKPNNIISTAIDVVITILQSASIFSPVQSFFIAISGIIIL
                     ISFLLMAIDLLIVYLKFFLMNVIVFFALALGGLNHFKQIGLNPIMTAIKVGVELFMIQ
                     GLMGICFTMIGAIANEINQNITIENILIALVTPVIFCIITKMIPGIIEAVFNGSIGES
                     AGASAGFRAVATMAAGAATGAAVGAVGVTRAMNAAKALHLAEGGAGGMDLVKGVAKNL
                     ASAGGEHLRDNLTRGRMPNQMANRLQEKLRDIQGKASEGGISAGTPKEESYQSGVNPD
                     VAK"
     gene            9048..9743
                     /locus_tag="ACJFEZ_000627"
     CDS             9048..9743
                     /locus_tag="ACJFEZ_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VirB8/TrbF family protein"
                     /protein_id="HGG0916766.1"
                     /translation="MNIFRQKQKIEKNEFDTSSNPYLNAKTEWLERYGDYITRAKNWQ
                     MVAIISLAMCFVCVLFIGYIGSQNKLIPYVIEVDKLGNTAKVGMVQNIDLKNPNVIKY
                     SLNTFIYSWRSVWGNAETQRKFIFDAYAYVEPRSKAFNYLNSEFQKNNPFTRSTKENV
                     RVKIKNIVPQNIDTWQVEWEETTTNLNEDILSKETYRGLIQIKQIIPNTEEQILKNPL
                     GIFITDINFAKIL"
     gene            9754..10908
                     /gene="trbG"
                     /locus_tag="ACJFEZ_000628"
     CDS             9754..10908
                     /gene="trbG"
                     /locus_tag="ACJFEZ_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbG"
                     /protein_id="HGG0916767.1"
                     /translation="MKKFIFNTNTATREIHHTPTSGARLKSLDYNYTKEYNYNYDEFY
                     GIHLSSFRGLDFRHKGDDLVANTPKNYTQKLKKLSLIASLLLFIGSSAYANNLNERDF
                     ANLTPKEKKDLAIAQKWINSKTTTIQGNNGEVIFLYGEAMPSIVTAPLRLTDISLEPG
                     EVIKDVQIGDSIRWAVSLSVSGEEPYLISHIIIKPTDKNLQTTMNIMTNKRVYRLNLI
                     SEAKKFMPAVSFNYPNSIIKTLEDYKNQMKAKSESKNFYKTKDDEIPSNIENLDFGYS
                     VEGNAPFKPLRIYNDGIKTYIQMPKNLKFYEAPALMILDSSNEKQIVNYRLKYDTFIV
                     DRLFNKAILLSNVGSKQEKIKITKHSNKANQDIVNNVLYDLSLQNKKENK"
     gene            10905..11348
                     /locus_tag="ACJFEZ_000629"
     CDS             10905..11348
                     /locus_tag="ACJFEZ_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916768.1"
                     /translation="MKILFLALIAFFITSCAKMNSDYFNSSFAVEETKINYNKIADDF
                     SQFIISYYAPNKTTFFINEDKNNQDFSNYFINTLRKKGYAISNDNSKKDLTFLSYQIS
                     QIDNENIVAIFNINESKINVIYKIIENKLVKPNITSFNFTPKTKG"
     gene            11352..12593
                     /locus_tag="ACJFEZ_000630"
     CDS             11352..12593
                     /locus_tag="ACJFEZ_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HGG0916769.1"
                     /translation="MLEVNMSPNKFLPKNNKRLSKVPIIIIFAIIAIVLFSIFYVALS
                     RKQNLERQTAQTTPKEETQIATNHNNDLNLYIDELQVQKAQENNIISPPMPNAAQQPI
                     QETNSQTTQQPPNNTPILVQNNAIDEKEMKIKKDMQLKALLSNTKLDIKTEATDSKKN
                     QAINFNPPNNNEDINLGAINPQNTGLGLESGTNKDVQGQQFLSQKKDNGYLKYVKQKP
                     LSTYEIKAGWNIPAILITGVNSDLPGQILAQVTQNVYDSATGKYLLIPQGTKVVGAYS
                     SNIIYGQSRLLVAWNKLIFPNGDTLNLDGMQGTSQDGYTGFEDQVDNHYFRIFGSAFL
                     LSSISAGIALSDNSDTNSEKETASDKAIAQAIQQMGQVASEMIRKNMNISPTLKIRPG
                     YKFNIFVTKDIILEPLELNND"
     gene            12586..13131
                     /locus_tag="ACJFEZ_000631"
     CDS             12586..13131
                     /locus_tag="ACJFEZ_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HGG0916770.1"
                     /translation="MIDIALIEQCKNPNVETQIIQKIIQVESNNQQFAININKVGSFI
                     LKNKKEAENLANNFIKGGYSVDIGLMQFNSNNLKSSTFSHYSVEDLLDTCKNIKAGSD
                     IFYLAYEMTNKNLAKEDRINQALSIYNTGDLKKGFSNGYVAKYDSTAKTIDDLEEKAR
                     KSDTRIKITYNLFNLQTQKKE"
     gene            13228..13590
                     /locus_tag="ACJFEZ_000632"
     CDS             13228..13590
                     /locus_tag="ACJFEZ_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HGG0916771.1"
                     /translation="MINNITIGGRLTADAELRHCNQGSIICTFTLANNRKYKEIENST
                     YIEVSLFGSFANAMHPYLKKGISVDVVGELTQDTWEHEGKIYSKHRIKAKEIDFRTPK
                     KEKQTIPNIEEGENYEGF"
     gene            13577..13717
                     /locus_tag="ACJFEZ_000633"
     CDS             13577..13717
                     /locus_tag="ACJFEZ_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916772.1"
                     /translation="MKDFKELETIPNFSYEVDPLTAEELGAFKENALSEDDAKEGTED
                     QG"
     gene            13722..15932
                     /locus_tag="ACJFEZ_000634"
     CDS             13722..15932
                     /locus_tag="ACJFEZ_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zincin-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HGG0916773.1"
                     /translation="MKNKDFIQETADKIIESLKNGTAPWIKPWKGIDLANNMPYNPIT
                     NKPYNGINSINLMLQNYNDPRWLTYKQAQSINAQVRKGEKSTLIQYWQFSEMVDKLDE
                     EGNVITNENGEVEQIEVKLENPKVFFAYVFNAEQIENMPKLEQKQEIDNFQIIKEAQK
                     ILDDSKAIIHHKGNRAFYNAANDTITLPPKENFLSEGAYYTTALHELGHWSGHESRLN
                     RDLKNPFGSKEYAKEELRAEIASFLFNGKIGLDYDPGQHLSYIDSWVQILEDKPNEIF
                     KATSDATKIVNFIESLSLEQKQKIELENSNTQNQALKQDKELNLATRKTYLYVPFEEK
                     EFAKKAGAKWDKEAKMWYAPKGADLKNFNQWLNQEQTQIYNNAYDEFKAFLEKHELNI
                     EGQPIMDGKLHRVSVIGDKGREKSGAYVGFLNGHPAGFVQNYKTGIKENWKSANSFEN
                     TKNQEIDFKNAMEHNKAIKEAREKELTQAYEKTALKLEDEYNNARWANSEHPYLKEKG
                     FDKNFYLKQDKNGNLLIPLRDIDGKYWATQRIFANGDKMIGATRTAEEKEQGIEYPAK
                     KQGNFFLLGAKNLNNVNEVYICEGFATSASVYEATKSPTIMGVDAGNLEIIVTNIKEK
                     YPKMNIIIAGDNDVKKELNGNKNVGKETALGIQKKYPEVKVVLPNFTNQEAQKGLSDF
                     NDLMKSRGLEEIKKQLKEQIAKQLMVEKATTKALDKNKGINKEITAKKDIGISL"
     gene            15929..17752
                     /locus_tag="ACJFEZ_000635"
     CDS             15929..17752
                     /locus_tag="ACJFEZ_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HGG0916774.1"
                     /translation="MKKQTNQTLVYILAITGILIAFIIISQIATQYLAKSFNYSPSLG
                     ETLLYGFYNPFKWISWSYTYYSFYPDFFKKFFMVMFAGIAFCFIVFILVKLAFLRKAK
                     AIENLHGSAHWATLEEVKESGVFDKDKGVYIGGFEHKKTLHYLRHDGPEHVMLFAPTR
                     SGKGVSLLLPTLLSWGESALIFDIKGELWALTAGWRQKYAKNKVLKLDPTCLDDSAVK
                     FNILEEIRLERMHEIKDTQNIAINLIFKGETPPTNPTQGSTSYFKSEAGNFLVSIILY
                     ALHLKKYRGENTPNLTDIYKFINDPNQSIDELLEEMVECDISTMDKNTQEIIQSISRS
                     MKNKATQELSGVVGTASEALNLYIDPILAKNTAKSDFKIKDLMNHESPISLYLIIPPG
                     QKDRLRPFFNLLINQIFRTLTDDSLNFKNGENIKRYKHKMLVLADELTMFGKLGVLEE
                     NLAYMAGYGMKFYGSIQDIQQLYSIYGEKETIISNCHIRIAFAPNKIETAKLLSEMGG
                     ITTIIKKSLTSSGKRTAVMLGNVSETIQEVQRPLITADECMRLPSAKKDKDDKIIAPG
                     DMLIFIAGQAPIYGKQILYFKDPAFLARSKVTLDKQVSDIL"
     gene            17763..>18455
                     /locus_tag="ACJFEZ_000636"
     CDS             17763..>18455
                     /locus_tag="ACJFEZ_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraL"
                     /protein_id="HGG0916775.1"
                     /translation="MAKIHFVLNGKGGIGKSFISSLLCQYFLDKGESIVAIDTDPNNT
                     TLLNVKALKAKFLQLIDDDGKFDVRAFDKIVELAFEKKAKNYIIDSGATTFIPLIDYL
                     KENEVLDFLTSNSLEVYMHVPIVGGQARDDTILGLTQLTQAFNCSFVVWVNEYHGSII
                     KDNSEFEETKEYQAIKEKIKAIIYLNALSKDTFGKDLLELTSKNLTFGEAMQDKSFSL
                     MSKQRLKIFKDKA"
BASE COUNT         7235 a         2689 c         3087 g         5444 t
ORIGIN      
        1 aaataaactt aatttttgct taacggttag agagagagag agagagagag agagagagag
       61 agagagcaga ataatcttaa acttttctta atttttaaac ttttacaact ccacaatcca
      121 tacaaaaaaa atcctgacaa atttttaact cttgcaattg aatcaaaagg actcttcaat
      181 gagtaatatt gagtttcaag caaggattaa cgaaaaaatc aaaagagaat ttggcgatat
      241 tttattttat ttggaagata aagaaacaat agaacttatg ctaaattcag acggcaaact
      301 ttggcttgag aagctaggtc aagatatgat atgtctaggc gaattttcag aagctaaagc
      361 aaaatctatc attaccgcag tttctacact tcttgataca accacaaatg cagaaaatcc
      421 tattttagaa tgtgaattgc cacttgatgg ttcaagattt gaagctctat tgcctcctat
      481 tgttgcaaaa ccaaccttta caatcagaaa aaaagctgtc aaaatcttta ctcttggtga
      541 ttatgtgggt tctaatatta ttacaccaaa tcaaaaagaa gttttgatta atgccattat
      601 cgaacgccaa aatattttag ttgtgggcgg aactggtagt ggtaaaacca ctttttcaaa
      661 tgctattatt gacggcattt ctaaaatcac tcccgatcac agaatagtaa ttattgaaga
      721 cacagcagaa cttcaatgtg cgagtgaaaa caaagtaatt ttaagggcta cggataaagt
      781 agatatgctt aggcttttga aagccacaat gcgacttcgc cccgatagaa ttatagtggg
      841 cgaaacaaga ggcaaagaag ctttagactt gctaaaagct tggaatacag gacaccctgg
      901 aggaatagct acaatccacg ctaattccgc aaatggagga ctcacaagaa tggagcaatt
      961 aatctctgaa gcaacaaatg caaagatgag caaattaatt gctgaagctg tgaatttaat
     1021 tgtttttatc tcaaaaagca aggagggtag aaaagtaaag gaaatcataa aagtaattgg
     1081 ttatgagaac gacaaataca ttacacaagc aatttaagga gtttaaatga aaaaattttt
     1141 aattttattt ttggcgttgg gattaggata tgctttagcc tcaacaactg gagcgggttt
     1201 gccttgggaa ggtccattag aacaaattaa agcgagctta agtggtcctg tagcctttat
     1261 tatgtcaatt ctagcaatca ttggagctgg agcgggttta atttggggca atgaatttag
     1321 cggttttatt aaaaccctct tttatatcgt aattgtaata gcattaatag taggcgcaaa
     1381 cagctttatg tcgctttttt caacaagtgg agcattaatc taatggaaga attgcaaaga
     1441 atagatattt atagcgccct caacaaacca aatttaatat ttggcgcaga tcgagagctt
     1501 attcttatgg ttggagtgat ttcatttgca ctaatcttta caggtgcaac gctccttaca
     1561 agcattatag gtatattctt attttttttc tgcaacatgc ttttaagatt aatggcaaaa
     1621 agcgatccac ttatgagaca aatatttttg tgccaaatta aatataaaaa attttattat
     1681 gcgcaaagca caccattttc aaaggattaa aatatgctag cacttaaaga attcagaagc
     1741 aaagcaaaag catttcccga tattctaaac tatgcaagtt ttatcgatga aggcattttg
     1801 ctcaacaaag acggaagttt aacagctggt ttttattatc gtgcagggga tatcagttcc
     1861 atgacaataa atgaaagaaa cactttaagt gctaggatta atagtgtttt aaaaactcta
     1921 ggtaatggct gggcggtgca tattgattgc tccaggataa aaacagaaaa ctacattgat
     1981 ggcgatactt tttataaaag caatattgca caaattcttg aaaatgaaag aaaacattat
     2041 tttgacaatg tagaacattt tgaaaatctt tttacaatga ttttcactta ccttccaccg
     2101 cacaaaagca taaataaaat caccgatttg atgataattg acgaaacaaa aaacaaaaat
     2161 cagggtgata aaatattaga gtattttaaa aacacccttc aaaaattaga agatagttta
     2221 agcaattata taaaaatcga aagaatgcta ccaagaatag ctattgacga atataataat
     2281 gagtatattt tagatgatat gcttgaatat attaattttt gtatttgtgg tgagagacaa
     2341 aaaataatac taccaaatgc ccctatgttt cttgattgtt tattgggtgg aaggcatttc
     2401 gaaacaggaa tgcacccaag aattgataat caatatatag gaattattgc tattgagggc
     2461 tttccaagcg aaagttatcc aaatatctta aatgcactca cagagcttaa tttcgattac
     2521 agattcaaca ctagatttat atttttagac gactttgaag ctcaaaattc acttaataaa
     2581 tatcgtaaaa aatggcaaca aaaaacaaaa ggttggcttg atcagttact agatcgccct
     2641 gcaagaaaac aagatgatca tgctgtgtta atggtgcaag aactagattc tgcattatca
     2701 gaatcaaaaa gcggtatgat aggatatggc tattataccg caaatattgt cgtttttgat
     2761 agagattatg agagcttaga atataaatta aaagatataa gaaaagtttt agaaaattta
     2821 ggctttctat caagaaccga aacaatcaat tcagtagaag cgtatttagg aactttacct
     2881 ggattcgtat atccaaattt acgccgtcca atattaaata cacttaactt aacacattta
     2941 attcctttgg cgtctatttg ggcgggggat aaatataatt caagtgaaag atttcctcca
     3001 aattctcccc cattaatgca agttgtaact tctggcaata cgcctttcag gttaaattta
     3061 catgttagcg atttaggaca cactttaatt ttcggtcctc ctgggagtgg taaatctact
     3121 cttttggcaa atatttttct tgcttggcaa aaatatccaa atgctaaaat ttacgcattt
     3181 gataaaggac aaagcttgct agctccgaca ctggcaacag gtggaattca ttatgatgta
     3241 gcaggagatc attcatcttt ggcttttgct cctttggcaa atatcaaaac agatgccgaa
     3301 atcgcatggg ctgaattttg gattgaaaca tgcttaaaat tacaaaatgt aaatattaca
     3361 ccaaaacaaa aaaaattaat acatgaagcc ttaatttctc atatcaatac aaattctacc
     3421 tctttgactg aatttgtatc agctttgcaa gatagtgatt taagagatgc tttaaattat
     3481 tatacaattt ctggaacagg tggtttttta tttgacagcg aggaagataa attaagctta
     3541 agcagtatca caacatttga aatagaagaa ttgatgaatt taggagatca atacataatc
     3601 cctgccttac tctacatttt caatcgtata gaaaaaggct tagatggaag tcctacatta
     3661 ctcatcattg atgaagcttg gattgcacta aagcaccctg cgtttaaaga taaaatagtt
     3721 aattggctta aagttttaag aaaagcaaat gtagccgtta taatggctac acaaagctta
     3781 agcgatagtg caaaaagtgg aattttagat attctacaag aatattgccc tactaaaata
     3841 tttttaccta atcccgaagc ttataaaaaa ggaagtgaaa atgttttagc tccttacgac
     3901 ttttataaaa tttttggact taacgatgtg caaattagca ttatcaataa tgccattcaa
     3961 aaaagagaat attattacac ctctccactc ggcactagac tttttaattt ggcactcgga
     4021 aaaactaatt tagccttcac aacaataagc gacaaagtaa gtgttaaaaa agtaagacaa
     4081 ctttatgaga aacataaaga aaattgggct tataaatggt tagaagaaaa agaaataaac
     4141 tacaaaagat ttgataattc acaaaaggag caaatatgaa aaattttatt tttggcgtaa
     4201 aaaaaattac attagcttta agtgcaactt tattaattag cagtaacgct tttgctgatg
     4261 atattttaac aggcgataca aaattagcat gcgaggcaat tttatgttta agtagtggca
     4321 cacgcccgag cgagtgttca tcttctttag caaggtattt ttctattaaa tttaaaaaac
     4381 cttggaaaac gattaatgca agaagagcat ttttaaattt atgccctata caaaatgacg
     4441 caaacataga agatttagtg ttaaataact tagtcgatga tgtattacct gtaagtgatc
     4501 ctaggcaatg cacaccaaat tatttaaaca cgcaagtaga aactaaaaga agttattcta
     4561 cttttggaat tatgagctat agaatcaatc caaatatgcc taacttttgc cacacattaa
     4621 tcaaccatgc ttataccgat tataaaactc caaaatataa atgcacaggg gaattttaca
     4681 attccttaga atggaaacta agtgcaaaat tacagcttat aactcaacaa gcttatgaaa
     4741 gcctttctga cgatcaaaga tatatgattt ctcgaacttg cggagatagg aattgttatg
     4801 actattatca aaaaatacca ttcactaaag aatgctggac ttactaaaag gagtagatat
     4861 gagcaataca agcataatca acataaacaa tcaagaagtt atttttgaaa acaaagatga
     4921 acaagttttt tgcacaagtt tagatgtggc taaggttttt gggaaaagac atgatgatgt
     4981 tttaaaagct attagaaata ttttaaacga cttacgagaa ataggggatt tgcaatgtat
     5041 ccgcaatttt acggaatcat ttcaataccg aaaaatagag ggttttagag gtagaggaaa
     5101 aaaatatcca tactatcaac ttacaaaaga tggtttctca tttatagcta tgggattaac
     5161 gggtagaaaa gcggataaat tcaaaatcgc tttcattaat gcttttaatg aaatggaaag
     5221 aattattaaa aatcaataca caccaaaact agaaaattat aataaatata agattcctaa
     5281 cacattctac aaggagatag catgagcaaa gttattttat ttgaaaatga agaattggga
     5341 caagtaagaa caattagaga taaaaataat gagcctttgt tttgcctaaa tgatatatgc
     5401 aaaatattaa atattaaaaa aacaaatagc gttagagact ctataaataa ggagttcgat
     5461 aaagggggcg tttttgagtg gcaccccttt aaaactcttg gtggaataca aaaatttatt
     5521 gtaataaatg aacctgaact ttactttgtc ttaatgagaa gtgataagcc aaaagcaaag
     5581 ccttttagac aatgggttat taaagaagtc ttaccaagca ttagaaagca aggttattac
     5641 gcgtctaaca acgcaccaaa actagaaaat tataataaat ataagattcc taacacacct
     5701 tataaagaaa atattattaa agcgattatg caaaccgaac aaaatcgtaa ttgtgaattt
     5761 gaagagctaa tcgcatatga aattaaagaa atatataaag acaataaatc tcatatcgaa
     5821 caaaaaatta attttaaagt aaaaggatta atatgaaatt ttaatttttg gcgatacaaa
     5881 ataaacatta aaaatttaaa agaaaggaga agtagaagtt taagaggtag gttaccgcat
     5941 aaccccaaca agtagggcaa ggctaataag ccttgactat tattatacat aatagtataa
     6001 taacaatgat tacgcggtca atcatggaca taaaatcact cactttcacg ggtaaaattt
     6061 agccataggg ggtcagacct acggctaacc cttaatgggt attctaacta aaacctactt
     6121 aaacttcaaa aatatacaaa atgaaaaaaa ccaacataga aattgtttaa tcaatcaaaa
     6181 taaacattaa aaattaaaag aaaggagata aataaagtta gtataaaagc caaagggttt
     6241 ctagtaaccc ccttaaagaa agggagaagt caaagctaat aagccttgac tattattata
     6301 catagtagta taataattac tagaattttg ttaatcaagg tttctcacct tctttctaag
     6361 gcaagttttg attaaccaaa ggctggaacc ctttggttaa tcagccttaa ctgcaattat
     6421 actaacttat ttcaaaatta caaatgaaaa aatctttatt tggcgtaaaa aaagccactt
     6481 caacaataat tgcaacttta attataggaa ctaataatgc ctttgcaggt ggtattcctg
     6541 ttattgatgt tagcgctatt gccaatcaag taaaagatta tgcaatgcaa cttcaacaat
     6601 acgagcaaat gtattctcaa ttgcaacagc aaatacaaat ggtgcaaatg caaaaacaga
     6661 atttagaaag attaactaaa gaagattggg ataacttagg aacggttctt tatcaaaccc
     6721 gaaatgtaat gaacaaagta aatggaattt cttatgatat aggtaatgtt tcgcgcaaat
     6781 ttgaagatac ttacaaaaat tttgaaggtt atagtaatga tcttgaaaac gcaacaaatg
     6841 aaagcgagag aaataaaatt tattctgata gatacaagca aattgcggaa acaaaccaaa
     6901 atacatttaa cggaacattg caacaactcg agcttcgata tcaagactta gaaagtgaag
     6961 atgtgcttat cgcaaaactt aagcaaaatt cacaaaattc taatggaaat ttgcaggctg
     7021 tgcaagccac caatgatctt ttagcttatc agattgatga gataagaaaa ctaagatcgg
     7081 tcattatgga tcaaagcaat atgcttacta attatttagc atcgcaaaat aacaagcaaa
     7141 ttttagaaca agcaaaaatg gaaaaacttt ttcaaagaaa taaaaacaat aatttttatc
     7201 aatcaaattc tgatgctttt aaatggaaat aaaatgatgt taaaatattt tgtttctata
     7261 ttaaatcaag gagaaaaaca atgaaacatt ttatttttag cggattaatt ggtttaggtg
     7321 ctttggcttt tttagcaggt tgtggcgatg aggcaaaaac aagcgattat tataaagcgc
     7381 acttagacga ggcaaaagct agagttgcag aatgtaaaaa aatggagaaa atgaatgaaa
     7441 ctcaacaaag ggattgctct aatgcaaatg aagcggtatt atttcaaaga gacaaaaata
     7501 ataaatttta tcaatcaagt cctgaagctt ttgaatggaa gtaaattagc tttagtttta
     7561 tttttatgct ttttgattcc aaatttagct tttggggctg aaagtcccga aggggcgtta
     7621 acactaatca aaaatggact cttatcttgg acgcccctta ttaaaaccgc ttgtttatgg
     7681 gtgttttgga ctttagttgc tattgatttg atttggactt ttggtttaaa agctttgagc
     7741 ggttttgaat ttggagagtt tttaaccacc cttattaaaa aaataatata tataggcata
     7801 ttcctatttt tatttaacac agatcaatgg ctacaaatta tttttaatag cttttcgcaa
     7861 ttagccacaa atgtaaataa tggtattgat gttaaaccta acaatatcat aagtacagca
     7921 attgatgttg taatcactat actacaatct gcaagtattt ttagtcctgt tcaaagtttt
     7981 tttattgcta tctctggaat tattattcta atatcattct tattaatggc aattgatttg
     8041 ctgattgtct atttaaaatt tttcttaatg aatgtaattg tattttttgc tttggcgtta
     8101 ggtggattaa atcattttaa acaaataggc ttaaatccta taatgacagc cattaaagta
     8161 ggtgtagaac tctttatgat acaaggatta atgggaattt gctttactat gataggagca
     8221 atagcgaatg aaattaatca aaatattact atagaaaata tattaatcgc attagttacc
     8281 cctgtaatct tctgcataat tacaaaaatg attcctggca ttattgaagc cgtatttaat
     8341 ggtagtattg gcgaaagtgc aggggcttca gcaggtttta gagcagttgc cacaatggca
     8401 gcaggagctg cgacaggtgc agccgttgga gctgttgggg ttactcgggc tatgaatgca
     8461 gctaaagcct tacatttagc agaaggtgga gctggtggaa tggatttagt taaaggagta
     8521 gctaaaaatc tagcaagtgc gggaggcgaa catttaagag ataatcttac aagaggtaga
     8581 atgccaaatc aaatggctaa tcgcttacaa gaaaagctta gagatataca aggaaaagct
     8641 agtgaaggtg gtatatcggc aggaacacca aaagaagaaa gctatcaatc aggagtaaat
     8701 cccgatgttg caaaataata aaactaacgc aagggtggta agtccttgca ttagcgtttc
     8761 acaaacggcg ataatttact ttttaggctt aaaaaagatt tttcttattt cttctctaaa
     8821 aagtgtaatt actactgcaa ttaccgcaat gaaaagatta aaaagttcca ttatggactc
     8881 ctgtaaaata aagtgtttcc accccaagcc caacttaata gccaaaaaaa aagctcaatt
     8941 cctattgaaa gaattgagcc aaacacatta taaacaggtt gtgaaacttt tagtccatct
     9001 accaaatgga ttaaattaat tatatcataa aaaggagtaa aaaaataatg aatattttca
     9061 gacaaaagca aaagatagaa aagaatgagt ttgacacttc aagtaatcct tatcttaatg
     9121 caaaaaccga atggctagaa agatacggag attatatcac tcgtgctaaa aactggcaaa
     9181 tggtagcgat aattagttta gccatgtgct ttgtatgtgt tctctttata ggctatatcg
     9241 gctctcaaaa caagcttatc ccttatgtta ttgaagttga taagttaggc aatacagcta
     9301 aagtaggaat ggtgcaaaat atcgacttaa aaaacccaaa tgtaataaag tatagtctaa
     9361 atacttttat ttattcttgg cgttcggttt ggggaaatgc cgaaactcaa agaaaattca
     9421 tatttgatgc ctatgcttat gtggagccaa gatcaaaagc atttaattat ttaaattcag
     9481 aatttcaaaa aaacaatcct ttcacacgat ctacaaagga aaatgtgcga gtgaaaatta
     9541 aaaatatcgt tccacaaaat attgacactt ggcaagttga atgggaagaa acgactacaa
     9601 atttaaatga agatattctt tctaaagaaa cttatcgagg attaatccaa attaaacaaa
     9661 tcattccaaa tacagaagaa caaattttaa aaaatccttt agggattttc atcactgata
     9721 ttaattttgc aaaaatttta taaggagtta aatatgaaaa agtttatttt taatacaaat
     9781 acagccacaa gggaaatcca ccacacccca acaagtgggg caaggctaaa aagccttgac
     9841 tataattata caaaggagta taattacaac tatgatgaat tttatggcat tcatcttagc
     9901 tcctttaggg gcttagattt tcgccacaag ggtgatgacc ttgtggcaaa caccccaaaa
     9961 aattatactc aaaaactcaa aaaactttct ttaattgcgt ctttactttt atttattggt
    10021 agtagtgcat atgctaacaa tctaaatgaa agagattttg caaatctcac accaaaagaa
    10081 aaaaaagatt tagcaatagc tcaaaaatgg ataaattcaa aaaccactac tatacaagga
    10141 aataatggag aagtaatttt tctttatggc gaagctatgc caagcattgt aactgcacct
    10201 ttaagactta ctgatatttc tttagaacct ggtgaagtga ttaaagatgt gcaaataggc
    10261 gatagtataa gatgggctgt ttcattaagc gtaagtggtg aagagcctta tttaatctct
    10321 catatcatca ttaagcctac cgataaaaac ttacaaacaa ctatgaatat catgacaaat
    10381 aagcgagttt atcgcttaaa tttaatatca gaagctaaga aatttatgcc tgcggtttca
    10441 ttcaattatc caaatagtat cataaaaact cttgaagatt ataaaaatca aatgaaagca
    10501 aaatcagaat ctaaaaattt ctataaaaca aaagatgatg aaattccgag caatattgaa
    10561 aatttggact ttggctatag tgtagaaggt aatgcacctt ttaaaccttt aagaatttac
    10621 aatgacggca taaaaactta tattcaaatg ccaaaaaatt taaaattcta tgaagcacct
    10681 gcgcttatga ttttagattc tagtaatgaa aaacaaatcg taaattatcg cttgaaatat
    10741 gatactttta ttgtagatag gctttttaac aaagcgattt tactttcaaa tgtaggctca
    10801 aaacaagaaa aaattaaaat cacaaagcat tcaaacaaag ctaatcaaga tatagttaat
    10861 aatgtgcttt atgacttatc actccaaaat aaaaaggaaa acaaatgaaa attttatttt
    10921 tggcgttaat cgctttcttt ataacctcgt gtgctaaaat gaattcggat tattttaact
    10981 ctagctttgc agttgaagaa acaaaaataa actacaataa aattgcagac gatttttcgc
    11041 agttcattat ttcatattac gcacctaaca aaactacatt ttttatcaat gaagataaaa
    11101 ataatcaaga tttttctaac tattttatca ataccttaag aaaaaaaggt tatgcaataa
    11161 gcaatgacaa ttctaaaaaa gatttaacct tcttaagcta tcaaatttca caaattgata
    11221 atgaaaatat agttgcgata tttaatatca atgaaagtaa aatcaatgtg atttataaaa
    11281 tcatcgaaaa taaacttgta aaaccaaata taacaagttt taattttact ccaaaaacta
    11341 aaggttaaat tatgcttgaa gtgaatatgt ctcctaacaa atttttacca aaaaataaca
    11401 aaaggctttc gaaagttcct attataataa tatttgcaat catcgcaata gtattattta
    11461 gcatatttta tgtagcctta tcaagaaagc aaaatttaga aagacaaact gcgcaaacca
    11521 caccaaaaga ggaaacacaa atagctacaa atcataacaa tgatcttaat ttatatattg
    11581 acgaattaca agttcaaaaa gcacaagaaa ataatataat ttcaccacct atgccaaatg
    11641 ccgcacaaca acctattcaa gaaacaaatt ctcaaactac acaacagcca cctaacaata
    11701 ctcctatcct tgtccaaaac aatgctatag atgaaaaaga aatgaagatt aaaaaagata
    11761 tgcagttaaa agctttatta agcaatacca agcttgatat caaaacagaa gcaacggata
    11821 gcaaaaaaaa ccaagcaatt aatttcaatc cacctaataa taatgaagat attaatcttg
    11881 gagcaatcaa tccacaaaat acaggactgg gcttagaaag tggcacaaac aaagatgtgc
    11941 aagggcaaca atttttatct caaaaaaaag acaatggcta tttaaaatat gtaaaacaaa
    12001 aaccattaag cacttatgaa attaaagcgg gttggaatat acctgccatt ttaattacag
    12061 gtgttaattc ggatttacct ggtcaaatat tggcacaagt aacacaaaat gtttatgata
    12121 gcgcaactgg aaaatacctt ttaattccac aaggaactaa agttgtagga gcttattcaa
    12181 gtaatattat ttatggtcaa tcaagactct tagtagcatg gaataagctt atttttccga
    12241 atggtgatac cttaaatctt gatggcatgc aaggaacttc acaagatgga tatacaggct
    12301 ttgaagatca agtggataat cattatttta ggattttcgg ctctgctttt ttactttcat
    12361 cgatcagcgc aggtattgcg ttgtctgata attcagacac aaacagcgaa aaagaaactg
    12421 cttcggataa agcaatcgca caagctattc aacaaatggg tcaagtcgca agcgagatga
    12481 taagaaaaaa tatgaatatc agccctactt taaaaattcg tcctggatat aaatttaata
    12541 tctttgtaac taaggatatt attttagagc ctttggagtt aaataatgat tgatattgct
    12601 ctaattgaac aatgcaaaaa tccaaatgta gaaacacaaa tcatacaaaa gattattcaa
    12661 gtagaaagca acaatcaaca atttgcaatt aacattaata aggttggctc ttttatatta
    12721 aaaaataaaa aagaagctga aaatttagcg aacaatttca ttaaaggggg atatagtgta
    12781 gatattggac taatgcaatt taattctaac aatcttaaat cttcaacatt ctcacattac
    12841 agtgtagaag atttattaga tacttgtaaa aatattaaag cgggtagtga tattttttat
    12901 ttggcgtatg aaatgacaaa taaaaatcta gcgaaagaag atcgtataaa tcaggcttta
    12961 agtatttata atactgggga tttaaaaaaa ggattttcta atggctatgt agctaaatac
    13021 gattcaacag caaaaacgat agatgacttg gaagaaaaag caagaaaatc ggacacaaga
    13081 attaagatta cttacaatct tttcaatttg caaacacaaa aaaaggagta aaaatggaaa
    13141 atgaaaattt ggaagaaaat aaacctacac aatttgatga taatgagcca agcttatttg
    13201 ataacttaga agatgaggag caagataatg attaataata ttacaatagg cggaagatta
    13261 acagctgatg ctgaattaag acattgtaat caaggtagta tcatatgcac ctttacctta
    13321 gcaaacaaca gaaaatacaa agagatagaa aattcaactt atatcgaagt atctcttttt
    13381 ggttcttttg ctaatgccat gcacccatat ttaaaaaaag gcatttcagt tgatgtggtt
    13441 ggagaactaa ctcaagacac ttgggagcat gaaggaaaaa tttactcaaa acaccgaata
    13501 aaagcaaaag agatagattt tagaacacca aaaaaagaaa aacaaacaat acctaatatt
    13561 gaagaaggag aaaattatga aggattttaa agaactagaa acaataccaa atttcagcta
    13621 tgaggttgat ccattaactg ctgaagaatt aggtgcattt aaagaaaatg ccttaagcga
    13681 agatgatgcc aaagaaggca cagaagatca aggataattt catgaaaaat aaggatttca
    13741 tacaagaaac agccgataaa atcatagaaa gcttaaaaaa tggaactgca ccatggatta
    13801 aaccttggaa aggtattgat ctagctaaca atatgcctta taacccgatt acaaacaagc
    13861 cttataacgg cataaatagc attaatttaa tgctacaaaa ttataatgat cctaggtggc
    13921 ttacttataa acaagcacaa agtattaatg cgcaagttag aaaaggtgaa aaatcgactt
    13981 tgattcaata ttggcaattt agcgaaatgg ttgataaatt agatgaggaa ggtaatgtta
    14041 ttacaaatga aaacggagaa gtagagcaaa tcgaagtaaa attagagaat cctaaagtat
    14101 tttttgctta tgtttttaat gccgagcaaa tcgaaaatat gccaaaattg gagcaaaagc
    14161 aagagattga taattttcaa ataattaaag aagcgcaaaa aattttagat gattcaaaag
    14221 caattattca tcacaaagga aatagagctt tttataatgc cgcaaatgat actattacac
    14281 tacccccgaa agaaaatttt ttaagtgaag gcgcttacta tacaactgct ttgcatgaat
    14341 taggacattg gagcggtcat gaaagtcgat taaatagaga tttaaaaaac ccttttggtt
    14401 ctaaagaata cgccaaagaa gaattaagag ccgaaattgc aagttttcta tttaatggta
    14461 aaataggctt agattatgat ccaggacaac acttatcata tattgatagt tgggtgcaaa
    14521 ttttagaaga taagccaaat gaaattttta aagccacttc agacgctacc aaaattgtta
    14581 attttattga aagtctttct ttggagcaaa aacaaaaaat agagcttgaa aattcaaata
    14641 ctcaaaatca agcgcttaaa caagataagg agttaaactt ggcaactaga aaaacttact
    14701 tatatgttcc ttttgaggaa aaagaatttg ctaaaaaagc aggtgcaaaa tgggataaag
    14761 aagctaaaat gtggtatgcc cctaaaggtg cagatttaaa aaatttcaat caatggttaa
    14821 atcaagagca aacacaaatt tataataatg cgtatgatga atttaaggct tttttagaaa
    14881 aacacgaact taatattgaa ggacagccta taatggacgg caaactgcat agagtcagcg
    14941 ttataggaga taaagggcga gaaaaaagcg gagcttatgt agggttttta aacggacacc
    15001 ctgcgggatt tgtgcaaaat tacaaaacag gtattaaaga aaattggaaa agtgctaatt
    15061 cttttgaaaa tactaaaaat caagaaatag actttaaaaa tgcaatggaa cataataaag
    15121 ccataaaaga agctagagaa aaagagctta cacaagctta tgaaaaaaca gctttaaaac
    15181 ttgaagacga atacaataat gcaagatggg ctaattcaga acacccctat ttaaaagaaa
    15241 aaggctttga taaaaatttc tatctcaagc aagataaaaa cggcaattta ttaattcctt
    15301 taagagatat tgacggcaaa tattgggcta cacaaagaat cttcgctaat ggtgataaaa
    15361 tgataggagc tacacgcaca gcagaagaaa aagagcaagg catagaatac cctgcgaaaa
    15421 agcaaggtaa ttttttctta cttggtgcaa agaatttaaa taatgtcaat gaagtttata
    15481 tttgtgaagg atttgcgaca agtgctagtg tctatgaagc tacaaaatct cctactataa
    15541 tgggagtaga tgctggaaat ttagaaatta tcgtaacaaa tataaaagaa aaatacccta
    15601 aaatgaatat cattattgca ggggataatg atgtaaaaaa agaattaaac ggcaataaga
    15661 atgtaggcaa agaaacagcc ttaggcatac aaaaaaaata tcccgaagta aaagttgtat
    15721 taccaaattt tacaaatcaa gaagcgcaaa aaggtttaag tgattttaac gatttaatga
    15781 aaagcagagg attggaagaa attaaaaagc aattaaaaga acaaattgca aagcaactaa
    15841 tggttgaaaa agccactact aaagcgctag ataaaaataa aggtatcaat aaagagataa
    15901 cagccaaaaa agatataggg atttctttat gaaaaaacaa accaatcaaa ctttagttta
    15961 tatattggca ataactggta tcttaatagc atttatcata ataagccaaa ttgcaacgca
    16021 atatttggca aaatctttta attactctcc tagtttaggt gaaactttac tttatggatt
    16081 ttataatcct tttaagtgga tttcttggag ttatacttat tattcttttt atcctgattt
    16141 tttcaaaaaa ttcttcatgg taatgtttgc aggtattgca ttttgtttta ttgtttttat
    16201 tttggtgaaa cttgcctttt tgcgtaaagc aaaagcaata gaaaatcttc acggatcggc
    16261 acattgggct actttagaag aagttaaaga aagcggtgta ttcgataaag ataaaggcgt
    16321 gtatattggt ggttttgaac acaaaaaaac acttcattat ttaagacacg atggtcctga
    16381 acatgtaatg ctttttgcac ctacaagaag cggtaaaggc gtaagcttac ttttacccac
    16441 actcttatct tggggcgaat ccgctcttat atttgacata aaaggcgagt tatgggcttt
    16501 aactgcgggt tggcgacaaa aatacgccaa aaataaagta ttaaaattag atcctacttg
    16561 tttagatgat agtgccgtaa aatttaatat tttagaagaa atcaggttgg aaagaatgca
    16621 cgagattaaa gacactcaaa atattgcaat taatctcatt ttcaaaggcg aaacgccccc
    16681 tactaatcct actcaaggta gcacatctta ttttaaaagt gaggcgggaa atttcttagt
    16741 ttcaattata ctttatgctt tacatttaaa aaaatatcga ggcgaaaata ccccaaatct
    16801 aaccgatatt tataaattta ttaacgatcc aaatcaaagt atcgatgaac tattagaaga
    16861 aatggttgaa tgtgatattt ctacaatgga taaaaataca caagaaatta ttcaaagcat
    16921 ttcaagatca atgaaaaata aagctacaca agaattaagc ggtgtagtag gaacagcttc
    16981 ggaagcttta aatctttata ttgatcctat tttggcaaaa aacacagcaa aaagcgattt
    17041 taaaatcaaa gatttaatga atcatgaaag ccctatcagt ctttatttaa tcattccgcc
    17101 agggcaaaag gataggttgc gtccattttt taatttactt atcaatcaaa tttttagaac
    17161 tttaacggat gattctttga attttaaaaa tggagaaaat ataaaaagat acaaacacaa
    17221 aatgttagta ttagccgatg agctaactat gtttggaaag ttaggagtgc ttgaagaaaa
    17281 tcttgcttat atggcaggat atggaatgaa gttttacgga tctattcaag atatacaaca
    17341 actttattct atttatggcg aaaaggaaac aattatttca aattgccaca taagaatagc
    17401 atttgcacca aacaaaatag aaaccgcaaa actcttatcc gaaatgggcg gaattacaac
    17461 tattattaaa aaatctctta caagctcggg aaaaagaacc gccgtaatgc ttggcaatgt
    17521 aagcgaaaca atacaagagg tgcaacgccc tttaattact gccgatgaat gtatgcgatt
    17581 accttcagcc aaaaaagata aagatgacaa gataatcgct cctggcgata tgttaatttt
    17641 tattgcaggg caagccccta tttatggaaa acaaatttta tactttaaag atcccgcatt
    17701 tttagcaaga tcaaaagtaa cactagataa acaagtcagc gatattttat aaaggagtaa
    17761 aaatggcaaa aatacatttt gttttaaatg gtaaaggtgg tataggaaaa agctttataa
    17821 gctctttact atgtcaatat tttttagata aaggagaaag tatagtcgct attgataccg
    17881 atcctaataa tacaacttta cttaatgtaa aagccttaaa agctaaattc ttgcaactta
    17941 ttgatgatga tggcaaattt gatgtccgtg cctttgataa aattgtagaa ttagcttttg
    18001 aaaaaaaggc taaaaactat attattgata gcggtgcaac tacttttata cctttaattg
    18061 attaccttaa agaaaatgaa gttttagact ttttaacaag caatagttta gaagtttata
    18121 tgcatgtccc tatcgtaggc ggacaagcga gagatgatac cattttggga ttaacgcaac
    18181 tcacacaagc ttttaattgc tcttttgtgg tgtgggttaa tgaatatcat ggatcaatta
    18241 tcaaagacaa ttcagagttt gaagaaacta aagaatatca agctatcaaa gaaaaaatca
    18301 aagctattat ttatcttaat gctttaagta aagatacttt cggcaaagat cttttagaac
    18361 tcacttcaaa gaatttaact tttggtgaag ctatgcaaga taaaagcttt tctctaatgt
    18421 caaaacaaag gcttaaaatt ttcaaagata aagcg
//
LOCUS       DBBXRO010000026        17464 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.026, whole genome shotgun sequence.
ACCESSION   DBBXRO010000026 DBBXRO010000000
VERSION     DBBXRO010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17464
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.026"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1118
                     /gene="dnaJ"
                     /locus_tag="ACJFEZ_000637"
     CDS             <1..1118
                     /gene="dnaJ"
                     /locus_tag="ACJFEZ_000637"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HGG0916776.1"
                     /translation="SYYEILEITQSADKDTIKKAYRKMALKYHPDRNQGDKEAEDKFK
                     LVNEAYEVLSNEEKRAIYDRYGKDALKGGGFGSGGAGFGGFEDLGDIFSSFFGGGFSG
                     ASQRRKKSSDEKFQAELVVNLKLSFKEAVFGCKKNIDFTYKSSCKTCSGTGAKDGKLQ
                     TCPKCKGRGQVGISQGFITFAQTCPDCKGSGESASEKCKDCKGRGYEELKDSVEVNIP
                     EGIDNGMNLRVAAKGNLSKSGDRGDLYVKVIVEEDDTFIRDDEDIYIEFPVFFTQAIL
                     GQSIKVPTIRGEATLNLPKGAKDGQRFVLEREGVKDVHSSRIGNQIVQIAIKFPNSLN
                     DEQKELLEKLSESFGIKDGMHHEQKGLFEKITHWFKS"
     gene            complement(1258..2508)
                     /locus_tag="ACJFEZ_000638"
     CDS             complement(1258..2508)
                     /locus_tag="ACJFEZ_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HGG0916777.1"
                     /translation="MKLVKLSLVAALAAGAFSVANATPLEEAIKDIDVSGVLRYRYET
                     GNEWSDINGVAPNEGGSISGKQDHKYRAQLNFSGAIADNFKAFVQLDYSAKDGGYGTN
                     NGSTTRAYAADNSSTLNVRQLYLTYTDENVATSVILGKQQLNTIWTDNAIDGLVGTGV
                     KVVNNSIDGLTLAAFAVDSYNSDEQGGELGTVLNFSENLYGAAAIGSYEVFNGQLNPQ
                     LWLAYMTDNAFFYALDAAYNTTIFDGVNWTLEGAYLGNSLDNERKDLGNGNGNFFALN
                     GSIEVNGWDATLGGLYYGKKDKATVTVIEDQGNLGSLLAGEEIFYTKGSNLNGDTGRN
                     IFGFVKAGYTFNETVRLGADFVYGGTKTEAGNGGDKLEAVARVDYKYSPKLNFSAFYS
                     YVNVDKDTDSTHRDAVRLQALYKF"
     gene            complement(2790..4133)
                     /locus_tag="ACJFEZ_000639"
     CDS             complement(2790..4133)
                     /locus_tag="ACJFEZ_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HGG0916778.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCVAMILIGIPVILAENVIGRKSMTNSVDAFKGKWKFVGYMGLLGSFGIMAYYMVLGG
                     WVFVYIFELIIGNFNLSHTITKDFTEYFFNEKISFNPLGVGIFTTLFVLINYIILRRG
                     IIDGIEKSVKFLMPLLFICLILVVGRNLSLEGAINGVKFYLTPDFDKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLSKNENMAKTAIYTGVLNTLIAVLAGFMIFPALFAAGL
                     EPDKGPSLVFQTLPIAFSHIHFGTIICILFFILLLIAALTTSLPIYQVIISVLEEKFK
                     LSKKTAINLTLGSIFILGNIPCILTYGPWRDITLIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWVLGKEQSIKELSNEGKLKSMGFKIWFYYIKFIIPLIIFAIFIYGIAN"
     gene            complement(4184..4852)
                     /locus_tag="ACJFEZ_000640"
     CDS             complement(4184..4852)
                     /locus_tag="ACJFEZ_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HGG0916779.1"
                     /translation="MKLKSLQIGHIKDYKGFRSAFIKDLYLEEVDINSLGILNDNIAD
                     TKHHGGKNKALFANSYHNYALWENFLGKKLACGMMGENLTLENLHEQNVCIGDIHRFE
                     NAILQVSEPRKPCVKISKVHQNPNFTQEIFKTGLSGWYYRVLEGKKIHAHSKIELIEK
                     NPINLSVLELNHLFYNPHQALKQNPSLLEKLSKLDTLISQNWHETIQKRLKNTYNLDY
                     MQNL"
     gene            complement(4849..6549)
                     /gene="dsbD"
                     /locus_tag="ACJFEZ_000641"
     CDS             complement(4849..6549)
                     /gene="dsbD"
                     /locus_tag="ACJFEZ_000641"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)H) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HGG0916780.1"
                     /translation="MRFIFTLLFTCYFLFASVLSLNEAFEVKSSSYDSAVSIDIKLGK
                     DIYLYSNQLKLYLNQNDISSLINLPPSTQRLNEKVYYQDLNLALPNLLLERFAQNQNN
                     QIKLQFQGCSEQGLCYNPQTWYFDLKHKDNKFEISAPYKEKQKTLSAKSEESMIANFL
                     ATDNLFWILLSFLGYGLLLSLTPCILPMIPILSSLIVAKSETKFSKKHSFFLSFIYVF
                     FMSLAYAIAGVIASFLGASVQGLLQKPSVLIFFALIFVLLALAMFESFRFELPLKFQN
                     FLHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLTGALIYIANTGDALLGASALFIMS
                     FGMGIPLLFIGLGLGFLKAGAWMQKVKIFFGFVMLAMAIWILSRIIETRYILIAFGIL
                     GVFFSVFMGIFEQAFNAVAKIKKSLLILVLAYSLSIFLGGIFGAKNFLNPLKLNSNMP
                     LNSSKLNYNFINDLDTLQKEIKTSTRPIMFNFTASWCENCKLLDELTFSDERIQEKLK
                     NFHLIKIDLTQNSDKDLEIMKEFGVFGPPVLIFFEKGKENLRITGFISAHDLLQKLEK
                     "
     gene            6644..7525
                     /gene="ppk2"
                     /locus_tag="ACJFEZ_000642"
     CDS             6644..7525
                     /gene="ppk2"
                     /locus_tag="ACJFEZ_000642"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HGG0916781.1"
                     /translation="MQEKVPAKIQEETKKDEIYVSVKKKKSTIEYEKDLKNLQIELLK
                     FQNYVKAKGLKVLILIEGRDAAGKGGAIKRLIEYLNPRGCRVVALEKPSDVEKTQWYF
                     QRYVTHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSNLM
                     FFKFYFSVSKEEQKKRFEKRRIDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVDYADKKIGDFSKIDQDLVRSGEEEIRKMEAN
                     LEKIDNKKADEKIKDLD"
     gene            7530..8720
                     /locus_tag="ACJFEZ_000643"
     CDS             7530..8720
                     /locus_tag="ACJFEZ_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HGG0916782.1"
                     /translation="MLERVKNLSDKYYEKIVNLRHQIHMHPELEFEEENTARLVCEIL
                     DEYGIKYEKNIAKTGILASIEGRKPSTKKAQCVLLRADMDALPVQEETNLSYASKING
                     KMHACGHDGHTAGLLGAVLILNELRDEFSGTIKFMFQPAEEGSGGAKPMIEAGILENP
                     HVDAVFGCHLWGPLLENTAQIVSGEMMAGVDVFDLEFIGKGGHGAHPHTTIDPIVMAS
                     KFVSDVQCIISRRLRPVDAGVITIGKFHAGTTFNVIPQNAILQGTVRFLSDENQKLLQ
                     SSIENTARAVALEFGGDFKLDYKREYPPLINDENAAKIARKAFGKVLGEQNIISVAKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLKNPTLHHSSTFCWEDENLKVLMQGDSMMALE
                     FLNS"
     gene            8802..9974
                     /locus_tag="ACJFEZ_000644"
     CDS             8802..9974
                     /locus_tag="ACJFEZ_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0042802 - identical protein binding
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HGG0916783.1"
                     /translation="MKNRVVLIVVILALFGVGAYFIFFNDNEKITYLTQKVKKIDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGSHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIASKQYQREQKLYAAKASSLENLETQKNNFYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDQ
                     MEVRMEIAEADVGKIKIGTELDFSLLSDPQKTYQASIASIDPADTQISDSSTSSSSSS
                     SSSSSSSSNNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKDVIAVPTYAIKNDAK
                     GYYVEILQDQKAVKKYVKLGIKDSVNTQILEGLSEGELLVVSSSGDNAAPKLRLRF"
     gene            9974..11899
                     /locus_tag="ACJFEZ_000645"
     CDS             9974..11899
                     /locus_tag="ACJFEZ_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916784.1"
                     /translation="MIFLNNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDEPSSGSYIFDDYEVTQLNSDEKARLRREKIGFIFQRYNLLNLLSANDNVAL
                     PAVYAGKKVQERNFRAQELLGNLELEHKIESKPNELSGGQQQRVSIARALMNGGELIL
                     ADEPTGALDSKSGIMVLEILKKLNTQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDS
                     KKDKIVYQGQVKSMPKEKKTLTLLKNQAFECLKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLD
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLKLQVGRILNNEDIETNANV
                     AVLDFNAKKNLFPRQKSEDVLGRVVIFNSQPFKIIGVLQKDTEKPIEDNVVRLYMPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAVIRILEIKRGQRDFFTFNSDTFKQAIT
                     ANKRTTTIFTASVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICSMGAILGVLLSVFVIFGFNTLSTDFPMILNAYSVLLGLLSSVLIGVIFGFF
                     PARNAANLNPISALSKE"
     gene            11901..13265
                     /locus_tag="ACJFEZ_000646"
     CDS             11901..13265
                     /locus_tag="ACJFEZ_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HGG0916785.1"
                     /translation="MKNLLSILLAFFLSACGVKLSLPKEPTMSEESFKDLNITYDWYK
                     AYDNAKLNEFLNFVLLNNSDINIARSTLLTALARADLIDYDFYPTLSANLGLSGEKNL
                     NSGVQSKKFSNSLNLSYELDIYGRIRDSSSASDFSAKASAYDLENLKISMINTALNGI
                     FELAYFNDVDNLLKEYLANLEQMRELYAYKFELGKIEELDLLNIEQNLLKARQDLLRN
                     EQNRNLLIKNLQDLIGKQEGFAYIDYFKALTLSDFKNLNPNFNIPLEALVYRPDVRSK
                     LNTLKSAFKDYTSVQKSIFPSISLGGALNGSDKQFDDSFKFEVLSGNIKISLPFLDYG
                     RVKQNIKISQFDYESALVNYEQSLQSAMNEFALNYKDYQSNTMLLQILKDTSFKQELI
                     TQAYWEKYNLGKSELKDYLDASNTLNSAKQSLLGARFNLLKTINSYYQITALSYDERN
                     LEMP"
     gene            complement(13336..14505)
                     /locus_tag="ACJFEZ_000647"
     CDS             complement(13336..14505)
                     /locus_tag="ACJFEZ_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HGG0916786.1"
                     /translation="MQIKQFKAILLILIFSINLYANNTNHTIDEILSQTKNKSALSNY
                     ASKKDLKLLEQKLKEHKNIGIRIYGDSHTAADFFPRVIRGYLIKSNSIGFAYPLQPKY
                     QQNLNLDYSYKDYEILNSRNTDTAGIDFPLGGIIAKAKEKGAKITLDTNLDKKKFKVG
                     FVFKAPNNTNAFSIKDAQNKSYELRSVANKWSYKEYELVFPLQISALQKNAQLGGYFI
                     TSKEDNAYLDTIAINGAKSDLWMSWNKKVSEQELKLLSNDLILLAYGSNDALFKGFEK
                     NKFKKNLKDWIHTLKTYNKNALIMLVSPPTVVKKQGKKYTLAPDFFAIRQALYEVAKE
                     EKTLLFDMHQFMQDSGGKNKWIEQKLSLQDVHLTIKGYELMAKKLLDDLKKYVHY"
     gene            complement(14495..15475)
                     /locus_tag="ACJFEZ_000648"
     CDS             complement(14495..15475)
                     /locus_tag="ACJFEZ_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HGG0916787.1"
                     /translation="MKMIKFFFILIIVFVLVCLVMNQSIFSYIEQKYHFTFYPKNDIL
                     QEANGFKNKLEQIRAILSNEPLPQNIEENIMVQEDMDELNASNDFIDKNTTIEDIQQT
                     EDENVSFIDNTKLEVHKGDEFLFIGDSLMQGVAIALNRDLIDLGLKANDLSKQNTGLS
                     YKSYFDWAKATKEAFAKNPNIKYLVVLLGANDPWDIKKGGIYHRFGSDSWIDIYTYRV
                     NEIINIAKQHHAKILWFEIPPVKKNELNEKIQILNKIYSEEILKNKQIFINTKLFFSV
                     NDEFSTYIKNENNKSIKMRTDDGIHFTSNGAKEMSKLLLQHITIKEENAN"
     gene            complement(15476..16852)
                     /locus_tag="ACJFEZ_000649"
     CDS             complement(15476..16852)
                     /locus_tag="ACJFEZ_000649"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HGG0916788.1"
                     /translation="MTYFSLEFSILMIVFFAIYWAFKDNYKIQNILILAFSYLIYILI
                     NPYFALILFIYTFFIHFFALLIFVRRKRYIFATCITFIILNLCFFKYFPNIKGSLDQV
                     LSFLGLDFLNIELILPIGISFYTFASITYLVDVYKKHHLESFLNLATFLSFFPTLLAG
                     PIMRSAFFFEQAYQKREFKHANLIIILLIFGIVKKVLIANYLGIYAKNILDFPQSYNF
                     IQLLSAIYAYAVQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKEFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTVANILIAFILSGLWHGSTLAFGVWGLLHGLGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYNKNLEDALEYFKACYNNFFQIPS
                     YNDIYMLVSFGVLFMIYPLFINFKEYCVKILNLTPFLLKPFVITFILLLVFAFMPNGI
                     PDFIYSSF"
     gene            complement(16902..17402)
                     /locus_tag="ACJFEZ_000650"
     CDS             complement(16902..17402)
                     /locus_tag="ACJFEZ_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HGG0916789.1"
                     /translation="MLSKKVVDLLNEQINKEMYAANLYLSMSSWCYENSLDGAGLFLF
                     QHASEESEHARKLITYLNETDSHVELKEVKQPEQNFKSLLDVFEKTYEHEQSITKSIN
                     DLVEHMLGNKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLISDNGNGLYLADQYIKN
                     LALSKK"
BASE COUNT         6054 a         2551 c         3166 g         5693 t
ORIGIN      
        1 taagctacta tgaaatttta gaaattactc aaagtgctga taaagatacc attaaaaaag
       61 cttatagaaa aatggcttta aaataccacc ctgatagaaa tcaaggagat aaagaagctg
      121 aagataaatt caagcttgta aatgaagctt atgaagtttt aagcaatgaa gaaaaacgcg
      181 ctatttatga tagatatggc aaagatgctt taaaaggcgg tggctttgga tcagggggag
      241 caggttttgg tggctttgaa gatttgggtg atattttttc tagttttttt ggtggcggtt
      301 ttagtggagc atcgcaacgc cgcaaaaaat caagtgatga aaaatttcaa gctgaacttg
      361 tagtaaattt aaaacttagt tttaaagaag cggtatttgg ctgtaaaaaa aatatagatt
      421 ttacttacaa atcttcatgt aaaacttgta gcggaacagg agctaaggat ggaaaacttc
      481 aaacttgtcc aaaatgtaag ggcaggggac aagtaggaat ttctcaaggt tttatcactt
      541 ttgcgcaaac ttgtcctgat tgtaagggga gtggagaaag tgcaagtgag aaatgtaaag
      601 attgtaaggg taggggctat gaagagctta aggatagtgt agaagtaaac atccctgaag
      661 gtatagacaa tgggatgaat ttaagagttg cagctaaagg caatcttagc aaaagtggcg
      721 atagggggga tttgtatgtt aaagttatcg ttgaagagga tgatactttt ataagagatg
      781 atgaggatat ttatatagaa tttccggtat tttttaccca agctatatta ggacaaagta
      841 taaaggtgcc tactatacga ggggaagcga ctttaaattt gccaaagggt gcaaaggatg
      901 ggcaaagatt tgtgcttgaa agagagggtg taaaagatgt gcatagctct cgcataggca
      961 atcaaatcgt gcaaattgct atcaaatttc caaattcact caatgatgag caaaaagaac
     1021 ttttagaaaa acttagcgaa agttttggga taaaagatgg tatgcatcat gaacaaaaag
     1081 gattgtttga aaaaataacc cattggttta aatcttaatt ttcttcaagc tttttagctt
     1141 gggaaaattt ctttgaattt aagttagaaa gatattttat ataaatttaa gttttaaaaa
     1201 taaggcataa aaaaaggtgg agtaaaactc caccttgaac ttagacttta gagcttctta
     1261 gaatttgtaa agagcttgaa gtcttacagc atcacgatga gtgctatctg tatctttatc
     1321 aacatttaca taagaataga atgctgagaa gttaagtttt ggagagtatt tataatctac
     1381 tcttgcaact gcttcaagtt tatctccacc attgccagct tctgttttag ttccaccgta
     1441 tacgaagtca gcacctaaac gaactgtttc gttgaaagta taacctgctt taacaaatcc
     1501 gaagatattt ctaccagtgt caccatttag atttgaacct tttgtataga aaatttcctc
     1561 acctgcaagt aaagagccaa gattaccttg atcttcgatt acagttacgg tagctttatc
     1621 ttttttaccg tagtataaac caccaagagt tgcatcccaa ccatttactt caatactacc
     1681 gtttaaagca aagaagttac catttccatt tccaagatct ttgcgctcat tatcaaggct
     1741 gtttcctaaa taagcacctt caagagtcca atttacccca tcaaagatag tagtgttata
     1801 agctgcatct aaggcataga agaaagcatt gtcagtcata taagctaacc ataattgtgg
     1861 gtttaattga ccattaaata cttcgtaaga accgatagct gcagcaccat aaagattttc
     1921 actgaaattt aaaactgtgc ctaattctcc accttgctca tcgctgttat agctatctac
     1981 agcaaaagca gctagagtta aaccatcaat gctgttgttt actactttaa cacctgttcc
     2041 tactaaacca tcgattgcat tatcagtcca gatggtgtta agttgttgtt tacctaggat
     2101 tacacttgta gctacatttt catctgtgta agttaagtat aattggcgaa cattcaatgt
     2161 tgatgaatta tctgctgcat atgcacgagt tgtagaacca ttatttgttc cataaccacc
     2221 atcttttgca ctgtagtcaa gttgaacgaa agctttgaag ttgtctgcta tagcaccgct
     2281 gaagttaagt tgagctctgt atttgtgatc ttgttttcca gagatactgc caccttcatt
     2341 tggagctaca ccattgatat cgctccactc attgcctgtt tcgtatctat atcttaaaac
     2401 acctgataca tcgatatctt tgatcgcttc ttcaagtgga gtagcattcg ccactgagaa
     2461 agcacctgca gcaagagctg ctactaaact aagtttaact agtttcatga gaattctcct
     2521 tgtttaaaat taaataaaac gctgtaattg tagcacataa atctatagtt ttttcttaaa
     2581 aagcacttaa aataataaaa attctaaatt tttagagtgg aaaatataat aaaaataggc
     2641 ctagcttggt atttactagg cctatattaa ggagtttttc ttatgaatgt tttcggttca
     2701 tttggaagta taagtcttaa aagtaaatga gaagtaatca aacataaaag atgaaaattt
     2761 aattctctta tgtttatatt tataaaaaat taattcgcaa ttccataaat gaaaatcgca
     2821 aaaatgatca aaggtatgat gaatttaata taataaaacc aaattttaaa tcccatgctt
     2881 tttaatttac cttcattgct aagctctttt atgctttgct ctttgccaag aacccagccc
     2941 acataaatgc agcaaaaaaa ggctgttaaa acaaataaaa tatttccact gataaaatca
     3001 aaactatcaa aaatattttt ccctttgata agagtgatat ctctccaagg tccataagtg
     3061 agtatacaag gaatgtttcc tagtatgaaa atcgaaccta gggttaaatt aatagctgtt
     3121 tttttagaaa gtttgaattt ttcttctaaa acactgatga taacttggta tataggcaag
     3181 ctcgttgtta atgctgcgat gagtaaaagt ataaaaaata aaatgcaaat gatagtccca
     3241 aagtggatat gagaaaatgc aataggcagg gtttgaaaca ctaaagaagg tcctttatcg
     3301 ggctcaagtc ctgctgcaaa aagtgcagga aagatcataa agcctgctag tacggcgata
     3361 agagtgttta aaactcctgt ataaatggcg gtttttgcca tgttttcatt tttgctaaga
     3421 tgagatgaaa gggtgatcat cacgccaaaa cccagagaaa gtgcaaaaaa gacttgtcct
     3481 agaacatcga tgagtagttt tggggataga attttgtcaa aatcaggcgt aagataaaat
     3541 tttacaccat ttatagcacc ttcaaggctt aagttgcgtc ctacaacaag tataagacaa
     3601 atgaaaagca aaggcatgag gaatttaact gatttttcta taccatctat aatgccacgc
     3661 cttaaaatga tataattaat aagaacaaaa agtgtagtaa aaattcctac gcctaaagga
     3721 ttgaaagaaa ttttttcatt aaaaaaatac tcggtaaaat ctttggttat ggtatgggaa
     3781 agattgaaat tccctatgat caactcaaaa atataaacaa aaacccagcc gcctaaaacc
     3841 atataataag ccatgatacc aaaactaccc aaaagcccca tatagcctac aaatttccat
     3901 ttgcccttaa aagcgtcgac gctgtttgtc atggattttc taccgatgac attttcagct
     3961 aagataacag gaatgccaat gagtatcatt gctacgcaaa atactaaaac ataagcacca
     4021 cccccatttt ctcctacaag atagggaaaa cgccaagtcg caccaaaacc tatggttgct
     4081 cctgcgacgg ttaaaatata agtaagagtg ctactccatg tttgtctttg catgcttatc
     4141 ctttcaaaaa aattaaattg tagcctaaga atactttaaa aaattataaa ttttgcatat
     4201 agtctaaatt ataggtattt tttaagcgtt tttgtatagt ttcgtgccaa ttttgtgaaa
     4261 tcagtgtatc gagtttgctt aatttttcaa gcaagcttgg attttgtttg agtgcttgat
     4321 gggggttgta aaataaatga ttgagttcta ggacgcttaa atttatagga tttttttcta
     4381 taagctcgat tttagaatga gcatggattt ttttaccctc taaaacacga taataccacc
     4441 cacttaatcc tgttttaaaa atttcttgtg tgaaatttgg attttgatgg acttttgaaa
     4501 ttttaacaca aggtttgcgc ggttcgctta cttgcaaaat agcattttca aatcggtgta
     4561 tatcgcctat acaaacattt tgttcgtgta aattttcaag ggttaaattt tctcccatca
     4621 taccgcatgc aagttttttt ccaagaaaat tttcccaaag ggcgtagtta tgataagaat
     4681 ttgcaaataa ggctttattt tttccgccgt gatgttttgt atcggctatg ttatcgttaa
     4741 gaatacctaa agaattgata tctacttctt ctaaataaag atcttttata aaagcacttc
     4801 taaagccttt ataatctttg atatgtccta tctgtaagct tttgagtttc atttttctaa
     4861 cttttgtaac aaatcatgtg cactgataaa accagtgatt ctaagatttt ctttgccttt
     4921 ttcaaaaaat atcaaaaccg gtgggccaaa aacaccaaat tctttcataa tttctaagtc
     4981 tttgtcgctg ttttgagtca gatcaatttt gattaaatga aaatttttga gtttttcttg
     5041 aattctttcg tcgctaaaag taagctcatc taagagtttg caattttcac accaagatgc
     5101 tgtaaagtta aacatgatag ggcgggtgct agttttaatc tctttttgaa gagtgtcaag
     5161 atcgtttata aaattataat ttaattttga agaatttaag ggcatatttg aatttaattt
     5221 caaaggattt aagaaatttt ttgcgccaaa gattccgcct aaaaatatac ttaaagaata
     5281 agccaaaacc aaaatcaata agcttttttt aatcttagct actgcattaa aagcttgttc
     5341 aaaaattccc ataaatacac taaaaaatac gcccaaaatt ccaaaagcga tcaaaatata
     5401 tcttgtttca atgatacgag aaagtatcca aatagccata gctagcataa caaagccaaa
     5461 gaaaattttt actttttgca tccaagctcc cgcctttaaa aagccaagac ctaaaccaat
     5521 gaaaagcaaa ggaattccca tgccaaagct catgataaaa agggcactag ctcctaaaag
     5581 tgcatcgcct gtgttggcta tgtagatcaa agcaccggtt aaaggagcag ctacacaagg
     5641 gcctacgata agagccgata aaaagcccat gatggctata cctagcactc ctttgccttt
     5701 ttcacttttt ttgtggagaa aattttgaaa ttttaaaggc agttcaaagc gaaagctttc
     5761 aaacattgcc aaagcaagca atacaaaaat tagcgcaaaa aagatcaaaa cactaggttt
     5821 ttgcaaaagt ccttgaacgc ttgctcctaa aaaactcgct ataactccgg caatagcata
     5881 ggctaaagac ataaaaaata cataaataaa agataaaaag aagctgtgct ttttagaaaa
     5941 ttttgtttcg cttttagcta cgatgagtga agataatata ggaatcatcg gcaaaatgca
     6001 aggagtaagt gaaagtaaaa gtccatagcc taaaaagctt agtaagatcc aaaaaagatt
     6061 atctgtggct aagaaatttg caatcatact ttcttcggat tttgcactca aggttttttg
     6121 cttttcttta taaggggctg aaatttcaaa tttattatct ttgtgtttta gatcaaaata
     6181 ccaagtttga ggattgtagc ataagccttg ttcggagcag ccttggaatt ggagtttgat
     6241 ttgattgttt tgattttgtg caaaacgctc aagtagtagg ttaggcaagg ctagatttaa
     6301 atcttgataa tacacttttt cattgagtct ttgggtgcta ggtgggagat tgattaaaga
     6361 gctgatatcg ttttgattga gatagagttt aagttgatta gaataaagat aaatatcttt
     6421 tcctaatttg atatcgattg atacagcgct atcataagaa ctcgatttta cttcaaaggc
     6481 ttcatttaaa gataaaacag aggcaaataa aaaataacaa gtgaataaaa gtgtaaaaat
     6541 aaaacgcatt gtcatcctag gcttaaatgt aaaatttgtg attttaatgt gaattatagt
     6601 ttgttatggt aaatttgctt taaatatttt ataaaggttg ctcatgcaag aaaaagttcc
     6661 agcaaagatt caagaggaaa caaaaaagga tgaaatttat gtttctgtta aaaagaaaaa
     6721 aagcactata gaatatgaaa aagatttaaa aaatctacaa atcgagcttt tgaaatttca
     6781 aaattatgta aaagcaaagg gtttaaaagt gcttatactt atagaaggac gcgatgcagc
     6841 aggcaagggc ggtgcgataa agcgtttgat agagtattta aatcctaggg gatgtcgtgt
     6901 ggtagctctt gaaaaaccta gcgatgttga aaaaacgcag tggtattttc aacgctatgt
     6961 gacgcatttg ccttctgcgg gtgagattgt gatctttgat agatcttggt ataaccgcgc
     7021 aggagtagag cctgtaatgg gtttttgtac tccacagcaa cataaagact ttttaagaga
     7081 ggtgcctttg tttgaaaata tgatatcaaa tagcaatttg atgtttttta aattttattt
     7141 ttctgtttct aaagaggagc aaaaaaaacg ctttgaaaaa cgccgcattg atcctttaaa
     7201 acaatacaaa ctttctcctg tggatcaaaa atctcaagaa ttatgggata aatacacctt
     7261 agcaaagtat tccatgcttt tagcatccaa taccccaacc tgtccatgga ctatcatttc
     7321 ttcagatgat aagaaaaaag caaggcttaa tttattgcgt tttatattgt caaaagtgga
     7381 ttatgcggat aaaaaaattg gagatttttc aaagattgat caagatttag taagaagtgg
     7441 cgaagaagaa attcgtaaaa tggaagcaaa tttggaaaaa atagacaata aaaaagcaga
     7501 tgaaaaaata aaggatttgg actaaaacta tgttagaacg cgttaaaaat ttaagtgata
     7561 aatactatga aaaaattgtc aatttaagac atcaaattca catgcaccct gaacttgaat
     7621 ttgaagagga aaatacagca agattggtat gtgaaatttt agatgaatat ggcattaagt
     7681 atgagaaaaa tatagctaaa acaggaattt tagcaagcat agaaggaaga aaaccaagca
     7741 ctaaaaaagc tcaatgcgtg cttttaagag cggatatgga tgctttgcct gtgcaagagg
     7801 aaacaaatct tagttatgct tcaaaaatca atggaaaaat gcatgcatgt ggtcacgatg
     7861 gacacacagc agggctttta ggagcggttt tgatcttaaa tgaattaaga gatgaattta
     7921 gtggaacgat taaatttatg tttcagcctg ctgaagaagg aagcgggggt gctaagccta
     7981 tgatagaagc aggcatactt gaaaatcctc atgtggatgc agtttttgga tgccatttgt
     8041 gggggccttt gcttgaaaat actgctcaaa ttgtaagcgg tgagatgatg gcaggggttg
     8101 atgtttttga tcttgaattt atagggaaag gcggacacgg agcgcaccct catacgacta
     8161 tcgatcctat agtaatggca agcaaatttg tcagtgatgt acaatgtatc atttcaaggc
     8221 gtttaagacc tgtggatgca ggggttatca ccatagggaa atttcatgcg gggacaacct
     8281 ttaatgtgat cccacaaaat gctatcttgc aaggaacggt gcgtttttta agtgatgaaa
     8341 atcaaaaact tttacaaagt tctatagaaa atacagctag agctgttgct ttagaatttg
     8401 ggggtgattt taagcttgat tataaaagag aatatcctcc tttaatcaat gatgaaaatg
     8461 ctgcaaaaat agctagaaaa gcttttggca aggtattggg cgagcaaaat atcattagcg
     8521 tagctaagcc tgatatggga gctgaggatt ttgctttttt aacgcgtgaa agaatgggtg
     8581 cttatgtttt tgtgggtatt tcaaaggatt tgaaaaatcc taccttacac catagctcta
     8641 ctttttgctg ggaagatgaa aatttaaaag tcttaatgca aggcgatagt atgatggctt
     8701 tagaattttt aaattcttaa aaatatgaat ttaaaaattc acaaaaaatt cactttgtat
     8761 agatacaatt gcgagattta ttttttaatt taaggtttag aatgaaaaat agggtcgttt
     8821 tgattgtggt gattttagca ctttttggag tgggcgctta ttttatattt tttaatgata
     8881 atgaaaaaat cacctatctt acccaaaagg ttaaaaaaat agatatttct caaactatag
     8941 aagcagtggg gaaggtttat gctaaagatc aagttgatgt gggtgctcaa gtaagcgggc
     9001 aaatcattaa gctttatgtg gatgtgggtt cgcatgtaaa acagggtgat ttgatcgcgc
     9061 aaattgataa agataaacag caaaatgatt tagatatcac aaaggcgcag cttgaaagtg
     9121 ctaaggctaa tctagaaagt aaaaaagtcg cccttgaaat cgcaagtaaa caataccaaa
     9181 gagaacaaaa gctttatgct gctaaggcaa gttctcttga aaatttagaa actcaaaaaa
     9241 ataattttta cactttaaag gcaaatgttg cagaacttaa cgctcaagta gttcagcttg
     9301 aaattactct taaaaacgct caaaaagatt taggatacac aaccatcact gcgcctatgg
     9361 atggagttgt gatcaatgtg gcagttgatg aggggcaaac tgtcaatgca aatcaaaata
     9421 ccccaaccat agtccgcata gctaatttag atcaaatgga agtaagaatg gagatagccg
     9481 aagcggatgt tggtaagata aaaatcggca cggagcttga tttttctttg cttagtgatc
     9541 ctcaaaaaac ctatcaggca agtatagcaa gtatagatcc tgcagatact caaatcagtg
     9601 attcaagtac gagttctagc tcttcaagtt ctagctcttc aagttcaagt tctaataatg
     9661 cgatatatta ttatgctaaa ttttatgtgg caaataaaga cgattttttg cgtattggta
     9721 tgagtataca aaatgaaatt gttgttgcaa gtgctaaaga tgttattgct gtgcctactt
     9781 atgcaatcaa aaatgacgca aaagggtatt atgttgaaat tttgcaagat caaaaagcag
     9841 taaaaaaata tgttaaatta ggcattaaag attctgtaaa tactcaaatt ttagaaggtt
     9901 taagcgaggg tgaattacta gtagtaagtt caagtggtga taatgctgct cctaagttaa
     9961 gattgagatt ttgatgattt tcttaaacaa tatttgtaaa aatataggcg agaatgccat
    10021 tttaaaaaat gtaagtttaa gtatagaaaa gggtgaattt gtcgctatca tcggacaaag
    10081 tgggagcgga aaaacttcac ttttaaatat cataggcact ttagatgagc caagtagtgg
    10141 gagttatatt tttgatgatt atgaagtaac ccagcttaat agcgatgaaa aagcgagatt
    10201 aagacgcgaa aaaataggct ttatttttca acgctacaat cttttaaatc ttctaagtgc
    10261 aaatgataat gtcgcattac ctgctgttta tgcgggtaaa aaagtacaag aaagaaattt
    10321 tagagcccaa gaacttttag gcaatttaga gcttgagcat aagatagaat caaagcccaa
    10381 tgagctaagt ggaggacagc agcagcgtgt ttctatagct agagctttga tgaatggagg
    10441 agagcttatt ttagctgatg agccaacagg ggctttagat agtaaaagcg gtattatggt
    10501 gcttgaaatt ttaaaaaaat taaatacaca agggcatacc atagtgcttg taacacacga
    10561 tccaaaaatc gcagcacaag ctaaaagagt gatagaaatc aaagacggcg agattttaag
    10621 cgatagcaaa aaagataaga ttgtttatca aggacaggtt aaaagtatgc caaaagagaa
    10681 aaaaactctt accttgctta aaaatcaagc ctttgaatgt ttaaaaatag cttattcttc
    10741 catacttgca cacaaacttc gttccatttt aaccatgtta gggattatta taggtatagc
    10801 ttcggttgtg tgcgtagtag ctttagggct tggctctcaa gctaaggttt tagaatccat
    10861 cgcaagactt gggactaata ccattgaaat tcgtcctggt aagggatttg gggatttgcg
    10921 ttcgggtaag acaaggctta attttagtga tttagaaacg cttagaagtt tagattattt
    10981 agaagcagta gatgcacact ctaatacttc aggcgtggca acttacacga atatttcttt
    11041 aagcgctaga gctgaaggag tgggagtaaa taattttgct atagagggtt taaaacttca
    11101 agtgggtaga attttaaata atgaagatat agaaactaat gctaatgtag cggtgcttga
    11161 ttttaatgct aagaaaaatc ttttccctcg ccaaaagagt gaagatgttt tagggcgtgt
    11221 ggtgattttt aattctcaac cctttaaaat cataggagtt ttacaaaaag atacagaaaa
    11281 gcctatagaa gataatgtag tgcgccttta tatgccttat actacgctga tgaataagct
    11341 tacaggcgat agaaatttgc gtgaaattat agtaaaagta aaggatgatg tgagttctac
    11401 tttggctgaa aatgctgtca ttagaattct agaaatcaaa cgcggacaaa gggatttttt
    11461 cacttttaat tctgatacct ttaagcaagc tatcacagca aataaacgca cgactaccat
    11521 atttacggct tcggtggcgg tgattgcttt gattgttggg ggtataggcg tgatgaatat
    11581 catgcttgtt tcggtgagtg aaagaacaag agaaatagga attcgtatgg caataggcgc
    11641 tagaagagag gatatcatga tgcagttttt aatcgaagcg gtgatgatat gttctatggg
    11701 tgcgatttta ggagttttgc tttctgtttt tgtgattttt ggttttaata ctctaagcac
    11761 tgattttcct atgattttaa atgcgtattc tgtgcttttg ggtttattaa gttctgtttt
    11821 aattggggtt atttttggat ttttccctgc aagaaatgca gccaatttaa atcctattag
    11881 cgccttatca aaggaataaa atgaaaaatt tattgagtat tttactggca ttttttttaa
    11941 gcgcctgtgg tgtaaaactt agcttgccta aagagcctac aatgagcgaa gagagcttta
    12001 aagacttaaa tatcacttat gattggtata aggcttatga taatgctaaa ttgaatgaat
    12061 ttttaaattt tgttttgtta aataatagtg atataaatat agctagaagc actttgctga
    12121 cagctttagc aagggctgat ttgatagatt atgattttta tccgacttta agtgcaaatt
    12181 tggggcttag tggagaaaag aatttaaatt ctggagtcca aagtaagaaa tttagcaata
    12241 gtcttaattt aagctatgag cttgacattt atggaaggat aagggatagc tcaagtgcga
    12301 gtgattttag tgcaaaggct agtgcttatg atcttgaaaa tttgaaaatc agtatgatta
    12361 atacggcttt aaatggtatt tttgaacttg cttattttaa tgatgtggat aatttactta
    12421 aagagtatct agctaattta gaacaaatga gagagcttta tgcttataaa tttgagcttg
    12481 gaaaaatcga agaacttgat ttgcttaata tagagcaaaa tttattaaag gcaaggcaag
    12541 atttattacg caatgagcaa aatcgcaatt tacttataaa aaatttacaa gatttgatag
    12601 gaaagcaaga gggctttgcg tatattgatt attttaaagc tttaactctt tctgatttta
    12661 agaatttaaa tcctaatttt aatattcctt tagaagctct tgtgtatcgt cctgatgtgc
    12721 gttctaagct caataccctt aaatccgctt ttaaagacta tacttcggtg caaaaatcaa
    12781 tctttccaag catttcttta ggcggggctt taaatggcag cgataagcaa tttgatgata
    12841 gttttaaatt tgaagttttg agtggcaata taaaaatttc cttacctttc ttagactatg
    12901 gcagagtaaa gcaaaatatc aaaatttcgc agtttgatta tgagagtgcg cttgttaatt
    12961 acgagcagag tttacaaagt gctatgaatg aatttgcctt aaattataaa gactatcaaa
    13021 gcaatactat gctacttcaa attttaaaag atactagctt taagcaagag ttgatcactc
    13081 aagcttattg ggaaaaatat aatttgggta aaagtgaatt aaaagattat ttagatgctt
    13141 ctaatacttt aaattccgct aagcaaagtt tgctaggagc taggtttaat cttcttaaaa
    13201 ccatcaattc ttattatcaa atcacagctt taagctatga tgaaagaaat ttggaaatgc
    13261 cttaatttgt atcgctttat ctgctaaaat atcaagtaga taaggctttt ttaattatat
    13321 tgataaaatt aaaaatcaat aatgcacata tttttttaaa tcatcaagca attttttagc
    13381 cattaattca tagcctttaa tggttaaatg tacatcttgc aaagagagtt tttgctctat
    13441 ccatttattt tttccaccgc tatcttgcat gaattggtgc atatcaaaaa gaagggtttt
    13501 ttcttctttg gctacctcat aaagtgcttg ccttatagca aaaaaatcag gagctagggt
    13561 gtatttttta ccttgttttt ttactacagt aggaggagaa acaagcatga taagggcgtt
    13621 tttattgtaa gttttgagtg tgtgaatcca atcttttaaa ttctttttaa atttgttttt
    13681 ttcaaaacct ttaaaaagtg cgtcattaga accataagca agtaagatta aatcattaga
    13741 taggagtttt aattcttgct cgcttacttt tttattccac gacatccaaa gatcgctttt
    13801 tgccccattg atcgctatgg tatctaaata agcattatcc tctttgctgg tgataaaata
    13861 tcctcctaat tgagcgtttt tttgtaaggc agaaatttgc aaaggaaaaa caagttcgta
    13921 ttctttatat gaccatttat tggctactga tcttagctca tagcttttgt tttgagcgtc
    13981 tttaatgcta aaggcattgg tgttatttgg agctttaaag acaaaaccta ctttaaattt
    14041 tttcttgtct aaattagtat caagggtgat ttttgcaccc ttttctttag ccttagctat
    14101 tatcccacct aaaggaaaat caatacctgc ggtgtctgta tttcttgaat ttaaaatttc
    14161 ataatcttta taagaataat caagatttaa attttgttga tatttgggtt gcaaagggta
    14221 ggcaaagcct atggaatttg attttatcaa atatcctcta ataacacgcg gaaaaaaatc
    14281 tgctgccgtg tgagaatctc cataaattct aatacctatg tttttatgct ctttaagttt
    14341 ttgctccaaa agctttaagt cttttttgga agcataattg cttaaagcac ttttgttttt
    14401 ggtttggctt agaatttcat ctatggtatg gtttgtgtta tttgcgtata aattgattga
    14461 aaatataaga attaataata tagctttaaa ttgcttaatt tgcattttct tccttgattg
    14521 ttatatgttg aagcaagagt tttgacatct cttttgctcc gtttgaggta aaatgaattc
    14581 catcgtctgt tctcattttt atacttttgt tgttttcatt tttaatatag gttgaaaatt
    14641 catcattaac gctaaaaaat agttttgtat tgataaaaat ttgtttattt ttgagaattt
    14701 cttcgctata aattttgttt agaatttgta ttttttcatt gagttcattt tttttaacag
    14761 gaggaatttc aaaccaaaga atttttgcat gatgttgttt agctatattg atgatttcat
    14821 ttactctata ggtgtagatg tcaatccagc tatctgaacc aaagcggtga taaattccac
    14881 cttttttgat atcccaagga tcatttgccc ctagtaagac aactagatat ttaatgttgg
    14941 gattttttgc aaaagcttct ttggttgctt ttgcccaatc aaaataagat ttgtaagaaa
    15001 gtcctgtatt ttgcttgcta agatcattag cttttaaacc tagatcaatt aaatcacgat
    15061 tgagtgcaat tgcaacgcct tgcattaaag aatcgcctat aaataaaaat tcatcacctt
    15121 tatgaacttc taatttggta ttgtcaataa aactgacatt ttcgtcttct gtttgctgta
    15181 tatcttcaat agtggtgttt ttatcgataa aatcattact tgcattaagt tcatccatat
    15241 cttcttgaac catgatattt tcttctatat tttgaggtag aggctcatta cttagtattg
    15301 cacggatttg ttctagttta tttttaaaac cattggcctc ttgcaaaata tcgtttttag
    15361 gataaaatgt aaagtgatat ttttgctcga tataagaaaa aatgctttga ttcatcacaa
    15421 ggcaaaccag tacaaaaact ataatcaaaa taaagaagaa tttaatcatt ttcatttaaa
    15481 aactcgaata aataaaatca ggaatgccat ttggcataaa agcaaacact aaaagcaaga
    15541 taaaagtgat tacaaacggc ttgagtaaaa agggtgtaag atttaaaatt tttacacagt
    15601 attctttaaa attgataaat aaaggataaa tcataaaaag tacaccaaaa cttacaagca
    15661 tataaatatc attatagcta ggaatttgga agaaattatt ataacaagct ttgaagtatt
    15721 ctaaggcatc ttctaaattt ttattataat aaaagaaaat ccaagtaaaa catacaaatt
    15781 gaaaggttaa aaatcttcct aaagctggaa ttttttgaag gctgaattta cttaaagcaa
    15841 gtaaatggat aaatacaata cccaagccat gcaataaacc ccaaacccca aaagccaaag
    15901 tacttccatg ccataagccc gaaagaataa aagcgatgag tatattagct acagtgcgag
    15961 gcattccttt tctgttgcct cctaaaggaa tatagatata atctcttatg aaagttgaaa
    16021 ggctgatgtg ccatctagcc caaaattctt taagattttt agctagataa ggcatattaa
    16081 aattcggtgg caaggtaaaa cctaacatta aagcaaaagc acaaactaga tctacatatc
    16141 cactaaaatc gcaatatatt tgcaccgcat aagcgtaaat tgcacttaga agttgtataa
    16201 aattataaga ttgtggaaaa tctaaaatat ttttggcata aattcctaag taattagcaa
    16261 taagaacttt tttcactata ccaaaaataa gcaaaatgat gatcaaattt gcatgtttaa
    16321 attcgcgttt ttgataagct tgttcgaaaa aaaacgcact acgcataatc ggccctgcaa
    16381 gtagggtagg gaaaaatgat aaaaaggttg ctaaatttaa aaagctttct aaatgatgtt
    16441 ttttgtatac atctacaagg taagtaatag aagcaaaggt gtaaaaacta atgcctatag
    16501 gcaagataag ttcgatattt aaaaaatcaa gccccaaaaa gcttagcact tgatcaagac
    16561 ttcctttgat atttggaaaa tatttgaaaa aacataaatt taatattata aaagttatac
    16621 aagtagcaaa aatatatcgt tttcgacgca caaagataag caaggcaaaa aaatgtataa
    16681 aaaaagtgta aataaataaa attaaagcaa aataaggatt aatcagtata taaataagat
    16741 atgaaaaagc caagattaaa atattttgta ttttataatt atctttaaat gcccaatata
    16801 tggcaaaaaa tacaatcatt aaaatactaa attctaaaga aaaataagtc atacgctacc
    16861 taagatgaaa ttataatttt gcctttttca aggcaaaaat attatttttt agacaaagct
    16921 aaatttttga tatattgatc agctagatat aagccgtttc cattgtcact gatgagtttg
    16981 attttatcta ctataccacg gaaaagtgct tcttcttcgt gctgttcgct tacataccat
    17041 tgaagaaaat taaaagtaga ataatcttta ttgcctagca tgtgctctac aagatcgttg
    17101 attgattttg taatgctttg ttcatgctcg taagtttttt caaaaacatc aagtaaagat
    17161 ttgaaatttt gttcaggttg cttcacttct ttaagctcta catgtgaatc tgtttcatta
    17221 agataagtta taagttttct tgcgtgttcg ctttcttcgc ttgcgtgttg aaaaagaaag
    17281 agcccagctc catcaagact attttcatag caccaagaac tcatacttag atataaatta
    17341 gctgcataca tttctttgtt gatttgctcg tttaataaat caactacttt ttttgaaagc
    17401 attctatctc cttattttta tttttagaat gtttttaaaa tgatatattg atttttttaa
    17461 aaca
//
LOCUS       DBBXRO010000027        17082 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.027, whole genome shotgun sequence.
ACCESSION   DBBXRO010000027 DBBXRO010000000
VERSION     DBBXRO010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17082
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.027"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            1..697
                     /locus_tag="ACJFEZ_000651"
                     /pseudo
     CDS             1..697
                     /locus_tag="ACJFEZ_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935935.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1051..2718
                     /locus_tag="ACJFEZ_000652"
     CDS             1051..2718
                     /locus_tag="ACJFEZ_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002832353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916790.1"
                     /translation="MLNYSIIENSLNIKLECLRKQSLEYKDLISNTLKEQKTTQVDKK
                     QSIAKLHALLENQNLECIHGGKVILKSNKGKSFKSDGIPIMLESDLLNSSIVACPHTI
                     ANVSYPCTKVVDIKGSLSQKKVNGEYAILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPEEGLGEQSKNQIELKEARLRMYYKEHKYQKDNLFTNLYLNDTLYQNEQGLDKLEL
                     SKNDLFNLNDINVLNTLKQDFSKDYEFKECEIRLGMHLLKLIFVIPKNIAKVYKSAYK
                     EFKNKDLGVGYFTQLHEYDKDYRENENIIHHRVFLAPAKMQKIGFEIAKGLDEWLDNE
                     NVCCFNVYTKDYFNANDKDMLISDNIKDDTNITQAHTNENYNNTQEIIPDNVIRIQTQ
                     DGSGEFIEIIFDEFKEWEKSSSGAIKPLFTPLEGIVEDISNSLENVSIIGDALAMLGA
                     VKNPKNAKNIIKKKSKYATKQEVIEVLKNKYNLKTSKELGLGRSKNVFWVKDNKQIKE
                     IWEEITDGADILKDINQDKLGGTIKMRKLDDQTIIQYKKLLKVEVGP"
     gene            2827..3519
                     /locus_tag="ACJFEZ_000653"
     CDS             2827..3519
                     /locus_tag="ACJFEZ_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916791.1"
                     /translation="MFFPDIDYSLWKKTQLKENAYNNPSLIISSCLITKMDILELFEY
                     YILFICGKSMGASRWECNDLILLGTCNIDNLSNPFSLNTPKPTYISEYINILGQLFLA
                     GYIDFGSYCDEEDRNKIDYPSNLSYYKEDKYQAWIYFRDNFFYQDKFIRDLDDPETLD
                     EGGYSLILNDVSWDTPQYWSQYNIWVATTPKGTKYFNEILAPKFYNKYKDLEVEIDDK
                     GNIIRWIGKINR"
     gene            3561..4850
                     /locus_tag="ACJFEZ_000654"
     CDS             3561..4850
                     /locus_tag="ACJFEZ_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916792.1"
                     /translation="MSETYEIYTPDGLTLDVEKDTNKILFKENIKPTGNYTEEYSKAV
                     FKSYYIMKNSPYKDYQPKYLDPNFYTGKASTLLEFTEWQSIYLKDPIKGSIAPWTKAE
                     KAYYKSLKTKRERYKYLIIRSGIRSTVIDIPYDAYANVDEKGYLINEEYAYIYDEVNN
                     NKETLKSSLFRQEWGIAAGILGKPEYFVRSKNHGFNARMIQCFILYIQLTGGGYEELG
                     IKRGIYNYADNLLEIGIGMAGIHKKNPLRAKLVKELAKTIQPNEFGMLPFIDEIMGAD
                     WVIDLNKYDFAYDEEGRIIWALYNDIEKGKLKDPRDVDSTPESRNEFDDAMDGYRNGM
                     KTNFDVDIRNERDERSAKLTMDTLILSAKLAALTPPQGYPNAPYYFTPERLEWIYKRG
                     YLDKLLDPRFPAIYRYNFPKELRAKILKFGEENGIKD"
     gene            5126..5500
                     /locus_tag="ACJFEZ_000655"
     CDS             5126..5500
                     /locus_tag="ACJFEZ_000655"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HGG0916793.1"
                     /translation="MKIRIYYEDTDAGGVVYHSNYLKFCERARSEIFFAKNAPIFDAN
                     KGHFLLTKANCFFIKSAKLGDIIEVKTKLLKIKNASVDIAQEIYRDEILLFKVELTLA
                     YIQNEKPAKIDAGIKKLFEELF"
     gene            complement(5492..6688)
                     /locus_tag="ACJFEZ_000656"
     CDS             complement(5492..6688)
                     /locus_tag="ACJFEZ_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916794.1"
                     /translation="MKKIFLILCLCFGFVFAKEQKLVDVKPAENFYPKISTQECDSNC
                     LLELLEARLYLSFLSEFVDQHDQFLSNIYAKLLNSITDFDKNLQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLSQRAEIKVKVFLTGTEDNDKIRSTLEQVQAQGYQYAIAAL
                     TLKGVNQLKDYSGDMKIFIPTLHKNNVSFSNLNKNIIFGSIDYDAQVLALLNKANSDI
                     AAFSDGSMLSSNLNSRVLEQNANTRFYRVEGEKLDFYRLLRSQGSLNNASIFLNTPLI
                     KTALISSQLRVYNIQPFVLLSTQINYNPTFLSLTQEGDRKNFILANSIDNHDDNLSYL
                     NEIFNQSIDYNWIAYATSIGTDYFYTQFLNTKSDSLFDEKIQNSQILYKVRLMKGSKA
                     SFEELK"
     gene            complement(6685..7293)
                     /locus_tag="ACJFEZ_000657"
     CDS             complement(6685..7293)
                     /locus_tag="ACJFEZ_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HGG0916795.1"
                     /translation="MIRTLHYLKAMGYDFTDENLKLHSKIENFKDLRKNIQECTLCHF
                     SKSRCFTLMENEIKNASLMIVDTLAHKNENEKGVLLNSKKGERLKFYLKEILGLCEKE
                     FYFSYLFKCFSNGKFDDFSLQSCLPFFWNELELVQPKMILCLGEYPFKSLGFSDFNAL
                     RGEIFAYKNFFIMASFELEFIEKNPSCEKIFIQDLKKIKGFL"
     gene            complement(7290..7769)
                     /locus_tag="ACJFEZ_000658"
     CDS             complement(7290..7769)
                     /locus_tag="ACJFEZ_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase family protein"
                     /protein_id="HGG0916796.1"
                     /translation="MPKFEITTLKREELDILLEMIKEFAQYEEMEDSLQCSKEKLETS
                     LFDNQFARAFLLKEDENIIGYMIYFYTFSSFLGNGGIYLEDIYIRKIFRKKGYGRAVF
                     KFLGQICKKENLKRLDWVCLNENILGINFYEGLKAQHLKQWRNYRLSGENLEKLCEL"
     gene            7908..8042
                     /gene="rpmH"
                     /locus_tag="ACJFEZ_000659"
     CDS             7908..8042
                     /gene="rpmH"
                     /locus_tag="ACJFEZ_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HGG0916797.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            8039..8365
                     /gene="rnpA"
                     /locus_tag="ACJFEZ_000660"
     CDS             8039..8365
                     /gene="rnpA"
                     /locus_tag="ACJFEZ_000660"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HGG0916798.1"
                     /translation="MKTFGKFSENEEFSAVYKTGKKWYCDGIIIFYLKNDEQKMAVVA
                     SKKVGKAVIRNRSKRILRALFTQFENKLQNGKYIFVAKSEITQFPFSRLEKNLKWGLK
                     KLECLK"
     gene            8362..8706
                     /gene="yidD"
                     /locus_tag="ACJFEZ_000661"
     CDS             8362..8706
                     /gene="yidD"
                     /locus_tag="ACJFEZ_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HGG0916799.1"
                     /translation="MVCLKTLRFYQKFLSPLKPPVCRYYPTCSEYAFWQFQKRNCILA
                     FFSSFFRILKCNPFFKGGFDYPKITKNITSCNLCFKPIFLAQKQLCFLYIPHHQDKSF
                     YLVKIIFQRTNK"
     gene            8703..10298
                     /gene="yidC"
                     /locus_tag="ACJFEZ_000662"
     CDS             8703..10298
                     /gene="yidC"
                     /locus_tag="ACJFEZ_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HGG0916800.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQQIKLEQNIT
                     TTQADSQNATNINAPQQNPQANLNVAATSNTIPQDKIIADIKSEHFEAQIDSLGRIVN
                     FYLQDKKYQNEKGEAINLISKGNLPYPLEMRFSDPAINTQAFSVPYAADMSEVFIDEN
                     GSKTLKLTQQLSDLIVEKKITFYSKGNYDIEVKLSKNINYFISPGYRPSIAVDSYTVH
                     GALVMDDQETIHTYEDGDMDKDENIKNAWMTSAFDRYYAAFFYNFEKPLNVTISKDAQ
                     NNPLVFAMSDNEFKAGGYMGPKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLH
                     NHIGNWGWAIVIMVLIIRIILFPLTYKSMISMNKLKDLAPKMKELRERYKGDPQKMNM
                     HMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPY
                     FILPILMGVTMFIQQLITPMTIQDPMQAKIMKFLPIIFTFFFITFPAGLTLYWFVNNL
                     CSLVQQWVINKMFAKEHHKKQAE"
     gene            10303..11154
                     /locus_tag="ACJFEZ_000663"
     CDS             10303..11154
                     /locus_tag="ACJFEZ_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HGG0916801.1"
                     /translation="MRIEAKDLQSALTEASKSLECSVIDLEYEIIQYSKNGFLGFWRK
                     NTIIEARAKKQPYSKKNSRKDFNASKNDVHRNYEKPYRKFDDRSKIDNKKEFEVEARE
                     VKPKEKYVVKSDGIFDSFHKESGGTRNKEDILDEIRIQLENLLKATCFNISLVELRMY
                     DEESVFIRLDGDDAALLIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQG
                     MQIYLQGVIEKVKINGRGQTKPLDGVLIKIALEKLRAEFPNKYVGIKQNNDQRYVVIN
                     DFFKKDE"
     gene            11147..12475
                     /gene="mnmE"
                     /locus_tag="ACJFEZ_000664"
     CDS             11147..12475
                     /gene="mnmE"
                     /locus_tag="ACJFEZ_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HGG0916802.1"
                     /translation="MNDTIVAIATAHGVGSISIIRLSGERALEIALKLSKKNELCPRY
                     ATFTKLFNQKNEFLDEAIVIYFKAPFSFTGEDIVEFQVHGGFSVSEILLEELISLGAR
                     LAEPGEFSKRACLRGKMSPLKALNIQDLILAKSANAAKIIARNMQGSLGELLDKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSESKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYKRAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DEIEQIGIELSKKSIEDADIILAIFDNSRKKDEEDENIFKLLSQSDKKIFYLLNKSDL
                     KTQFDKPCDIDFIELSVQNDIQILKEKLEKYLNSLDSDGFLVSSIALINACKISSEAI
                     LRAKELLSENSLELFAFELNLAIGELAKFTKDFDRNEILDEMFGNFCLGK"
     gene            12486..14672
                     /gene="purL"
                     /locus_tag="ACJFEZ_000665"
     CDS             12486..14672
                     /gene="purL"
                     /locus_tag="ACJFEZ_000665"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HGG0916803.1"
                     /translation="MDKETIKAHKISDEEYEQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDGKCGKHQKYLVKGVVSGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGICKSEDIFYAKAEGIGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDQTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWN
                     LDAVVMGEVTDTGKMELFWHDELVGLIPIDPLSEKAPILDRPVSEPKYLNEIKDYNFT
                     LKMSQQELFEKMLKNENINNKAFIYDQFDSSVQTNTIKADGALGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIFPSPTIVNVGVLEDANKTLKANFEK
                     ENTIVYLLGESFGEFAASMAMKIQDKKVAGSLKELDYKAELRLWNLLYTANQNSLFEC
                     ANSVGVGGIAMTLAKMFAISSMGANLNSGFSDEKMIFDESASRAIVGLDKENEEAFLK
                     LAHELGVKATKLGFSTKEQSFKLDSINLSKDELNKLYFDSFKEQIQ"
     gene            14669..15439
                     /locus_tag="ACJFEZ_000666"
     CDS             14669..15439
                     /locus_tag="ACJFEZ_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HGG0916804.1"
                     /translation="MIFVLIILTILVFYWYYKTWGKQDFLNSVTRGAKGFAKGFARGV
                     MEERIDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMISQILDANAKDERERAFLKAS
                     FNEHKENIHDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALVDADFSAKKREILEQIA
                     KAFDIAKSELDNFIASISNLKSTKKELSLDEAYRILELSNNADLNAVKKQYRALAKKY
                     HPDILNANNVSEEELKKGVEKFQKINEAYEKIKKHLEK"
     gene            15555..>17082
                     /gene="purH"
                     /locus_tag="ACJFEZ_000667"
     CDS             15555..>17082
                     /gene="purH"
                     /locus_tag="ACJFEZ_000667"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HGG0916805.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFELLSTGGTFKLLKENGVKV
                     VEVSEFTKSPELFEGRVKTLHPKIHGGILHKRSDESHIKQAKENGILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKTIEALKKGEND
                     EKFRLNLMIKAYEHTANYDAYIANYMNERFNRGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSTNFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSISAYGGVVAVNGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPYLIRSFDSYDFKHIDGGFVYQNSDEVGEDELKNAKLVSQREASQ
                     VEIQDLEIAMKVATLTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIVKAQEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVIQAANEYGIALYFTGVRHF
                     L"
BASE COUNT         6335 a         2220 c         3021 g         5506 t
ORIGIN      
        1 aggaaaaaac gatcactcca taaaacctct tgttaatact ctctattttt attcttatct
       61 tttagaatta gatgctaact ataacaaagt taaagataaa agccttagtg agtgtataga
      121 gtatcttaat cattttatga aaaatattca aatttataca gaaacttttg tgttaaaaaa
      181 taatgctact aataaaaata gctcttttgg gttcaataaa aaccatccag aaaagattaa
      241 ccactttgag tattctcttt cattaatagc cactataatg caagaaacca atggtatttt
      301 agaagagctt ggagatagtt attatacaag ttataaagtt cctattatta gttaaacaga
      361 aattatagat tttattttaa aggtgcaaga aaaagaaaaa tatattttaa ttcttgataa
      421 aaatgatttt aataaataca gaaaagattg ttcctttatt aataatcaag aaaatttagc
      481 ccataaaatt gccattgggg aatttagaat tttcattgca gtttataaag atatgaaatg
      541 tcttgaaaat attaacaata taacaaaaat atatggatat aattcaaaag tttataggct
      601 aaaagatcaa atttgggatg agcggtattt aggtagagtt tgtaaaatat cgcaagcttt
      661 atattttagt ggaaaagcca aaataggtat tatttaggaa aattatgata ggtagagact
      721 ttttatattc tattcataaa gataaaaaag tatttatttt gtgaaaataa aagcatcatt
      781 gattgtcaaa gcatttatga agaactttat aaattagaag caacgacaga ttttactttt
      841 gaagaactcc aaagctatca agcttatatc ttccgaaact ccaccctcct tacaggctcc
      901 accgaacttc ctaataatcc tttttacttt ggagaattag atcaagataa tcttataaaa
      961 caagatatac ccagttatta tttttctcct aaagatgaag gcagtggttt aggaagactt
     1021 agtatctttt ataaaaatga tgaactttgc ttgcttaatt attctattat agaaaattct
     1081 ttaaatatca aattagaatg cttaagaaaa caaagcttag aatacaaaga tttaatttca
     1141 aacactctaa aagaacaaaa aaccacacaa gtagataaaa aacaaagcat agccaaactt
     1201 cacgctcttt tagaaaatca aaacctagaa tgtatccatg gaggcaaagt catacttaaa
     1261 tcaaacaaag gaaaatcctt taaaagtgat ggtatcccta taatgctaga aagtgattta
     1321 ttaaactcta gtatagtagc ttgtcctcac actatagcta atgtaagtta tccttgtact
     1381 aaggtagtgg atattaaagg ctccttatct caaaagaaag taaatggaga atacgctata
     1441 ttacaagaac tcatctcagc ttgtaaaaca gataaaggct ttgctttaaa agtaagcttt
     1501 acccctacta agtttaaatt tgatcacagc tttgatcctg aggagggctt aggagaacaa
     1561 agcaaaaatc aaatagagtt aaaagaagct agattaagaa tgtattataa agagcacaaa
     1621 tatcaaaaag acaatctttt cactaattta tatctaaacg ataccctata tcaaaacgaa
     1681 caaggtttag ataaattaga attatctaaa aatgatttat tcaatctaaa tgatattaat
     1741 gtactaaata ctcttaaaca agactttagt aaagattatg aatttaaaga gtgtgagatt
     1801 agacttggta tgcatttgtt aaaattaatc tttgttatcc ccaaaaacat tgccaaagtt
     1861 tataaaagtg cttataaaga atttaaaaac aaggatctag gagtagggta ttttacacag
     1921 ctacatgaat atgataaaga ttatagagaa aatgaaaaca tcatccatca tagagttttt
     1981 ttagctcctg ctaaaatgca aaagattggt tttgaaattg caaaaggttt agatgagtgg
     2041 cttgataatg aaaatgtgtg ttgctttaat gtttatacta aggattattt taacgcaaat
     2101 gataaagata tgcttataag tgataatata aaagatgata caaatatcac acaagctcac
     2161 accaatgaaa actataacaa tactcaagaa atcatccctg ataatgttat aagaatacaa
     2221 acacaagatg gtagtggaga gtttattgag ataatatttg atgaatttaa agaatgggaa
     2281 aaatcatcaa gcggagccat aaagccttta tttaccccat tagaaggtat agtggaagat
     2341 atttcaaatt cacttgaaaa tgtcagcatt atcggtgatg ccttagcaat gcttggtgca
     2401 gtgaaaaatc ctaaaaatgc aaaaaatatt attaagaaaa aatccaaata tgccactaaa
     2461 caagaagtga tagaggtgtt aaaaaataaa tacaatctta agacttctaa agaattagga
     2521 cttggtagaa gcaagaatgt tttctgggtt aaggataata aacaaataaa agaaatttgg
     2581 gaagagatta cagatggggc agacatatta aaagatataa atcaagataa acttggaggt
     2641 actataaaaa tgagaaaatt agatgatcaa actattatac aatataaaaa gcttctaaaa
     2701 gtggaggtgg gaccatagag gtaaattcta ataaaccaag aggaaatctt agaacaatac
     2761 atatagaaaa tggggtgaaa aatgaagtat aattatatca aatgaaataa agaagaaaaa
     2821 tgtgctatat tttttcctga tatagattat agcttatgga agaaaacaca attaaaagaa
     2881 aatgcctaca ataatccctc tttaattata tcttcttgcc tgataacaaa aatggatatt
     2941 ttagagttat ttgagtatta tattttattt atttgtggaa aaagcatggg cgcatcaaga
     3001 tgggaatgta atgatttaat tttattgggt acctgtaaca ttgacaatct tagcaaccct
     3061 ttctctttaa atacacccaa acctacctat ataagtgaat atataaacat cttaggacaa
     3121 ctattcttag caggatatat agactttggt tcttattgcg atgaagaaga tagaaataaa
     3181 atagactatc cctcaaactt atcttattat aaagaagata aataccaagc ttggatatat
     3241 tttagagata atttctttta tcaagacaaa tttattagag atttggacga tcctgaaaca
     3301 ttagacgagg gtggatatag tcttatttta aatgatgttt cttgggatac gccacaatat
     3361 tggtcacaat acaatatctg ggtagcaaca acccccaaag gcacaaaata ctttaatgaa
     3421 attttagctc ctaaatttta caacaaatac aaagatttag aagtagagat tgatgataag
     3481 ggtaatatta taagatggat aggaaaaatt aatagatgag tttatttgga ttttacattg
     3541 gattttacga aggataaata atgagcgaaa cttatgagat ttatacaccc gatggattaa
     3601 cattagatgt ggaaaaagat accaataaaa tactatttaa agaaaatatt aaacccacag
     3661 gcaattatac cgaagaatat tccaaagcgg tttttaaatc ttattatatt atgaaaaact
     3721 ccccctacaa agactatcaa cccaagtatc tagatcctaa cttttataca ggtaaagctt
     3781 ctactttact tgaatttaca gaatggcaaa gcatatattt aaaagatcct atcaaaggaa
     3841 gcatagctcc ttggactaaa gcagaaaaag cttattataa atctttaaaa actaaaagag
     3901 aaagatataa atatctaatt ataagaagtg gtataagaag tacagttata gatataccct
     3961 atgatgctta tgctaatgta gatgaaaaag gatatttaat caatgaagaa tacgcctata
     4021 tttatgatga agttaacaat aataaagaaa ccttaaaatc ttctcttttt agacaagaat
     4081 ggggtatagc agcaggaata ctaggaaaac ctgaatattt tgtgcgttct aaaaatcatg
     4141 gctttaatgc cagaatgata caatgtttta ttttatatat tcaactcaca ggtggaggat
     4201 atgaagaatt aggtataaaa agaggaattt ataattatgc tgataatctt ttagaaatag
     4261 gtataggtat ggcagggata cataaaaaaa atcctttaag ggctaaattg gtaaaagaat
     4321 tagctaaaac tatacagcct aatgaatttg gtatgctacc ttttatagat gagattatgg
     4381 gagcagattg ggtgattgat ttaaataaat atgattttgc ctatgatgaa gaaggcagaa
     4441 tcatttgggc tttatataat gatattgaaa aaggtaaatt aaaagatcca agagatgtgg
     4501 attctactcc tgaaagtaga aatgaatttg atgatgctat ggatggatat agaaatggga
     4561 tgaaaactaa ttttgatgta gatattagaa acgaaagaga tgaaagatct gctaaactga
     4621 ctatggatac cctaatatta agtgccaaac tcgcagccct cactcctcct caaggctatc
     4681 ctaatgcccc ttattatttt acgcctgaaa gattggaatg gatttataaa agaggatatt
     4741 tagacaaact ccttgatcca agattccctg ctatttatag atataatttc ccaaaggagc
     4801 ttagagctaa gatactaaaa tttggtgaag aaaatggcat taaagattaa aaaatcactc
     4861 aaaatcttta atatactttt ccaatgcttt cagggtaaga ttctcaaaaa gaatcttatc
     4921 ttctttaata ttgttttgta tggcagcttc aagatatctt aaaaagtaaa actgcatttt
     4981 aattttaatt tttataataa tgtaaagctt gattactttt taaatatgga taaaatttca
     5041 tttagatatg tttaaaatta gaaaaattta acatattttt tgatacatta gtttttgatt
     5101 gaatttttga caaaaggatt ctaaaatgaa aatacgcata tattatgaag atacagatgc
     5161 tggaggagta gtgtatcata gtaattattt aaaattttgt gaaagagcaa gaagtgaaat
     5221 tttttttgct aaaaatgcac cgatttttga tgctaataag ggacattttt tattaacaaa
     5281 agcaaattgt ttttttataa agtcagctaa acttggtgat attatagagg ttaaaacaaa
     5341 gcttttaaaa ataaaaaatg cttcagttga tattgcgcaa gagatttata gagatgagat
     5401 tttgcttttt aaggttgaac ttacccttgc gtatattcaa aatgagaagc ctgctaagat
     5461 agatgcggga attaaaaagc tttttgaaga attattttaa ttcttcaaaa ctagctttag
     5521 atcctttcat gaggcgaact ttatataaaa tttgagaatt ttgaattttt tcatcaaaaa
     5581 ggctatcgct tttggtattt aaaaattgag tgtaaaaata atctgttcct atgctcgtag
     5641 catatgctat ccagttgtaa tctatgcttt gattaaaaat ttcgtttaga tatgatagat
     5701 tatcatcgtg attatcaata gaatttgcaa gaataaaatt tttacggtcc ccttcttgag
     5761 taagacttaa aaatgtagga ttataattga tttgagttga taagagcaca aaaggttgga
     5821 tgttatatac gcgtaattga gagcttataa gtgctgtttt gattaaagga gtgttgagaa
     5881 atattgaagc attatttaaa ctgccttgcg agcgtaagag tctataaaaa tcaagttttt
     5941 ctccctcaac acgataaaat cttgtatttg cattttgttc aagtacgcga gaatttaaat
     6001 tactcgaaag catagatcca tcgctaaagg ctgctatatc ggaatttgcc ttgtttaaaa
     6061 gtgctaacac ttgagcatca taatctatgc ttccaaagat tatatttttg tttaaatttg
     6121 aaaaagaaac attattttta tgaagagtag ggatgaaaat tttcatatct cctgaataat
     6181 cttttaattg attcacgcct ttaagtgtta gtgcagcaat agcgtattga tagccttgag
     6241 cttgaacttg ctcgagtgtt gaacgaattt tatcattgtc ttctgtgccg gttaaaaaaa
     6301 ctttaacttt aatttcggcc ctttggctta aaagataggc aatgcttgag ttgattatgg
     6361 tattagaata actttttata gttttttcag gtatgatgat ggcaagcttt acagaagtga
     6421 ttttttgtaa atttttgtca aaatccgtaa tagaatttaa aagtttggca taaatatttg
     6481 ataaaaattg atcatgttga tcaacaaatt cgctcaaaaa actaagataa agccttgctt
     6541 ctaaaagttc tagtaggcag tttgagtcac attcttgtgt gcttattttt ggataaaaat
     6601 tttcagcagg tttaacatcg actaattttt gttccttggc aaaaacaaag ccaaagcata
     6661 aacataagat taaaaatatt ttcttcataa aaatccttta atttttttta gatcttgtat
     6721 aaaaattttt tcacagcttg gatttttttc tataaattca agctcaaaac ttgccattat
     6781 aaagaaattt ttataagcaa agatttctcc tctaagagcg ttaaagtctg aaaaacccaa
     6841 gcttttaaaa ggatactcac ctaaacaaag aatcatttta ggctggacaa gttctaactc
     6901 attccaaaaa aatggcaagc aagattgtag cgaaaaatca tcaaattttc cattagaaaa
     6961 acatttaaaa agataagaaa aataaaattc tttctcgcaa agtcctaaaa tttctttgag
     7021 ataaaatttt aatctttctc ctttttttga atttaacaaa actccttttt cattttcatt
     7081 tttatgcgct agtgtatcaa cgatcataag agaggcattt tttatctcat tttccataag
     7141 cgtaaagcag cgtgatttgg aaaaatgaca cagagtacat tcttgaatgt tttttcttaa
     7201 atctttaaaa ttttctattt ttgaatggag ttttaaattt tcatccgtaa aatcataacc
     7261 catggccttt agataatgta aagttcttat catagctcac aaagtttttc taaattttct
     7321 ccacttaaac gatagttacg ccattgtttt aaatgctgcg ctttcaaacc ctcataaaaa
     7381 tttataccta aaatattttc atttaaacac acccaatcaa gtctttttaa attctctttt
     7441 ttgcatattt gtcccaaaaa tttaaaaact gctcgcccat aacctttctt gcgaaaaatt
     7501 tttcttatgt aaatatcttc taaataaatt ccaccatttc ccaaaaagga tgaaaaagta
     7561 taaaaataaa tcatatatcc tatgatattt tcatcttctt taagtaaaaa tgctcgggca
     7621 aattgattat caaataaaga agtttcaagt ttttcttttg aacattgtaa agaatcttcc
     7681 atctcttcgt attgcgcaaa ttctttaatc atttcaagca aaatatccaa ttcttcacgc
     7741 ttgagtgttg taatttcaaa ttttggcatt ttttaaatat tcctttgttg atttgatttt
     7801 gcaaatttat caaaataaaa taaaaaatac tcttaattaa aagcaattta taagtaagat
     7861 taagataaaa tacaagctta ttttatattt ttttaaggaa aattgaaatg aaaagaactt
     7921 atcagccaca tggtacccca agaaaacgca ctcatggttt tcgcgttcgt atgaagacta
     7981 aaaatggtcg caaggtgatc aacgcaagac gcgctaaagg tagaaaaaga ctcgctgtgt
     8041 gaaaactttt ggtaaattca gcgaaaacga agaattttca gccgtatata aaacaggtaa
     8101 aaagtggtat tgcgatggca ttatcatctt ttatcttaaa aatgatgagc aaaaaatggc
     8161 agttgttgct agtaaaaaag ttggaaaagc agtgattaga aatcgctcaa aacgtatttt
     8221 aagagcttta tttactcaat ttgaaaacaa acttcaaaat ggaaaatata tttttgttgc
     8281 caaaagtgaa atcactcaat ttcctttttc tagattagaa aaaaatctaa aatggggatt
     8341 aaaaaaacta gaatgtttaa aatagtatgt ttaaaaactc ttcgctttta tcaaaaattt
     8401 ttaagccctt taaaaccccc tgtttgtaga tattatccca catgttcaga atacgccttt
     8461 tggcaatttc aaaaaagaaa ttgtattctt gcattttttt caagtttttt tagaatttta
     8521 aaatgcaatc ctttttttaa agggggattt gactatccaa aaattactaa aaatattact
     8581 tcttgtaatc tatgttttaa gcctattttt ttggcgcaaa aacagctttg ttttttatat
     8641 ataccccacc atcaggataa aagtttttat cttgttaaaa ttatctttca aaggacaaat
     8701 aagtgaataa ttcgaataat atttttcagc aaaaacgcat tcttttagct gtagttattt
     8761 cttttttatt ttttgttgtg tatgattatt tttttatacc taagcaacaa ataaaattag
     8821 agcaaaacat tactactaca caagctgatt ctcaaaacgc aaccaatatc aatgctccac
     8881 aacaaaatcc acaagcgaat ttaaatgtag ctgcaactag caatacaata cctcaagata
     8941 aaatcattgc cgatattaaa agcgagcatt ttgaagcgca gattgactct ttaggcagaa
     9001 ttgtaaattt ttatcttcaa gataaaaaat accaaaatga aaaaggcgaa gctatcaatc
     9061 ttataagcaa aggaaatttg ccttatcctt tagagatgcg ttttagcgat cctgctatca
     9121 atacgcaagc ctttagcgtg ccttatgctg cggatatgag tgaagttttt atcgatgaaa
     9181 atggcagtaa gacactaaaa cttacccaac agctttcaga tttaattgtt gaaaagaaaa
     9241 tcacttttta ttctaagggt aattacgata ttgaagttaa attaagtaaa aatataaatt
     9301 atttcataag tccaggttat cgtccaagca tagcagtaga tagctataca gttcatggag
     9361 ctttggttat ggatgatcaa gaaaccatcc atacttatga agatggcgat atggacaagg
     9421 atgagaatat taaaaatgct tggatgactt cggcttttga tagatattat gctgccttct
     9481 tttataattt tgaaaaacct ttaaatgtaa ctatcagtaa agatgctcaa aataatcctt
     9541 tggtatttgc gatgagtgat aatgaattta aagccggtgg ttatatgggc cctaaagaac
     9601 atgtgatttt aagatctata gatccgcgtc ttgaagctgt tgtagagtat ggttggttta
     9661 cttttatagc taagcctatg tttgaatttt taaatttttt acataatcat ataggaaatt
     9721 ggggttgggc tattgttata atggttttaa ttattcgtat aattttattc ccattaacct
     9781 ataaatctat gatttccatg aataaactta aagacttagc acctaaaatg aaagaattaa
     9841 gagagcgcta taaaggcgat cctcaaaaaa tgaatatgca tatgatggag ctttataaaa
     9901 aacatggtgc aaatcctatg agcggatgtt tgcctatact tttacaaatt cctattttct
     9961 ttgctattta tcgcgtatta ctcaatgcta tagagctaaa agctgcccct tgggcgtttt
    10021 ggatacacga cttatcagta atggatcctt attttatttt acctatttta atgggtgtaa
    10081 caatgtttat acagcaatta atcaccccta tgaccataca agatcctatg caagcaaaaa
    10141 ttatgaaatt cttgcctatc atttttacct ttttctttat tacttttcca gcgggtctta
    10201 ctctttattg gtttgttaat aatctttgtt ctttggtaca acaatgggta atcaataaaa
    10261 tgtttgcaaa agaacatcat aaaaaacaag cggagtgaaa aaatgagaat tgaagcaaaa
    10321 gatcttcaaa gtgcattaac agaagcttca aaaagccttg aatgctcggt tatagattta
    10381 gaatatgaaa tcattcagta ttccaaaaat ggatttttag gcttttggcg caaaaatact
    10441 atcatcgaag ctagagctaa aaaacagcct tatagtaaaa aaaattctag aaaagatttt
    10501 aatgcgtcca aaaatgatgt tcatagaaat tatgaaaaac cttaccgcaa attcgatgat
    10561 agaagtaaaa tagacaataa aaaagaattt gaagtagagg ctagagaagt taaacctaaa
    10621 gagaaatatg ttgtcaaaag cgatggaatt tttgatagct ttcacaaaga aagcggagga
    10681 actcgcaata aggaagatat tttagatgaa attcgcatac agctagagaa tttattaaaa
    10741 gcaacttgtt ttaatatctc tttagtggag ttaagaatgt atgatgaaga aagcgttttt
    10801 atccgtttag atggtgatga tgcagccttg ctaattggca aagaggctca tcgttacaag
    10861 gctatttctt atcttttgca taattggatc aacctcaaat acaatctttt agttcgtctt
    10921 gaaattgcac aatttttaga aaatcaaatt caaggaatgc aaatttatct tcaaggtgta
    10981 attgaaaaag ttaaaatcaa tggaagaggt cagacaaaac ctttagacgg agttttgatt
    11041 aaaattgctt tagaaaaatt aagggctgaa tttccaaata aatatgtagg tatcaaacaa
    11101 aacaacgatc aaagatatgt tgtaattaac gattttttta aaaaagatga atgatactat
    11161 agtagctatt gcaactgccc atggagtggg ttctatctcg attataagat taagcggaga
    11221 aagagcgctt gaaattgctt taaaattaag caaaaaaaat gaactttgcc cccgctatgc
    11281 aacttttaca aagcttttta atcaaaaaaa tgaattcctt gatgaagcca tagtgatcta
    11341 ttttaaagcc ccttttagtt ttacaggtga agatatagtt gaatttcaag tgcatggtgg
    11401 ttttagtgta agtgaaattt tgcttgaaga gttgataagc ttaggagcaa gactagcaga
    11461 acctggagaa ttcagtaaaa gagcttgttt aaggggtaaa atgagtccct taaaggcttt
    11521 aaatatacag gatttaatct tagcaaaatc tgcaaatgca gcaaagatta tcgcaagaaa
    11581 tatgcaagga agcttgggag aacttcttga taaaattcgc acagatttgg taaaaacttt
    11641 agcttttgtg gaaacgagta ttgattatgc tgatgatgat ttgccttctg atttactaga
    11701 acaaattagc acaatgtgtg aagaaaattc taaaattcta aaagaaattt atacactttc
    11761 agaaagtaaa aaaggattga tagagggttt taaaatcgct attgtgggta agcctaatgt
    11821 tggaaaatct tctcttttaa atgccttgct ttcttataaa agagctattg tttctgatat
    11881 agctggaacg actcgtgata ccatagaaga gagttttaaa ctaggtacgc atctattgcg
    11941 tattattgat actgcaggaa ttcgagaaag taaagatgaa attgagcaaa tcggtataga
    12001 gcttagcaaa aagagcattg aagatgcaga tattatctta gctatttttg ataattcaag
    12061 aaaaaaagat gaagaggatg aaaatatttt taagctttta agtcaaagcg ataaaaagat
    12121 tttttatctt ttaaataaaa gtgatttaaa aactcaattt gataaacctt gtgatattga
    12181 ttttatagaa cttagtgttc aaaacgatat tcaaatttta aaagaaaagc ttgaaaaata
    12241 tttaaattcg ctagatagtg atggattttt agttagttct atcgctctta ttaatgcttg
    12301 taaaatttca agcgaagcga ttttaagggc taaagaatta ctcagtgaaa attctttaga
    12361 gttgtttgcc tttgagttaa atttagccat tggcgaactt gcaaaattta ctaaagattt
    12421 cgatagaaat gaaattttag atgaaatgtt tggtaatttt tgtttaggaa aatgaaagga
    12481 taaaaatgga caaagaaacc ataaaagcac ataaaatcag tgatgaggaa tatgaacaaa
    12541 tattagaaat tttagggcgt gagccaaatt tacttgaact aggtgtcatt tctgcgatgt
    12601 ggagcgagca ttgttcttat aaatccagta aaaaatatct taatggtttt ccaactaaag
    12661 caccttgggt gattcaaggc ccaggagaaa acgcaggggt tattgatatt gggcaaggta
    12721 tggcagcagt ttttaaggta gaaagtcaca atcatcctag ctttatcgag ccttttgcag
    12781 gtgcggctac gggagtaggg ggaattttgc gtgatgtttt caccatgggt gcaagagtgg
    12841 ttgcagggct gaattcttta aaatttggcg atatccatga tgggaaatgt ggcaaacatc
    12901 aaaaatacct tgttaaaggg gttgtaagtg gaatttctca ttatggaaat tgcatgggag
    12961 tgccaactat aggtggagaa tgtgcttttg atgagtgttt taatggaaat attttagtca
    13021 atgcttttgc tttgggtatt tgtaaaagtg aagatatctt ctatgctaag gccgaaggca
    13081 taggaaatcc tgtgatttat gtaggctcta aaacgggccg agatgggtta ggtggagctg
    13141 taatggcaag tgatagcttc aatgaagaaa gtaaaagttt aagacctact gttcaaattg
    13201 gcgatccttt cagtgaaaaa cttttaatgg aagcttgctt ggagcttttt aaaacagatt
    13261 atattgtagg tattcaagat atgggtgcag caggacttac ttcaagctct tttgaaatgg
    13321 caggaagaag tggtagcggt atgaagcttt atcttgatca aactcctatg cgagaaagcg
    13381 gtatgacgcc ttatgaatta atgctgagtg agtctcaaga aagaatgtta atttgtgcta
    13441 aaaaaggcta tgaagataag gttatagaaa tctttaaaaa atggaatttg gatgctgtgg
    13501 ttatgggtga agtaactgat actggaaaaa tggagctttt ttggcatgat gagcttgtag
    13561 ggcttatacc tattgatcct ttgagtgaaa aagcgccgat tttggatcgt cctgtgagtg
    13621 aaccaaagta tttaaatgaa attaaagatt ataacttcac gcttaaaatg tctcaacaag
    13681 agctttttga aaaaatgcta aaaaatgaaa acattaacaa caaagccttt atttatgatc
    13741 agtttgattc tagtgtgcaa acaaatacta taaaagcaga tggagcttta ggtgcgagtg
    13801 tgatacgcat caaagaaaat ggtgcaagtg tagcaatggc tatagagtgt aattcgcgtt
    13861 taaattatgt aaatcctaaa ataggagcag ctttagcagt agcttcagca ggaagaaaag
    13921 ttgcttgcac gggggctaag cctttggcaa taagtgattg tttaaattat ggaaatccgc
    13981 aaaatcctga agtgatgtgg caatttgcac aaggttgcga aggcattaaa gaagcttgta
    14041 aagagttaaa taccccagta gtaagcggca atgtttcact ttataatgaa actgaaggtg
    14101 ttagcatatt tccaagtcca actatagtta atgtgggcgt tttagaagat gcaaataaaa
    14161 ccctaaaagc aaattttgaa aaagaaaata ctatcgttta tcttttaggt gaaagttttg
    14221 gagaatttgc ggcttcaatg gctatgaaaa tacaggataa aaaggtagca ggtagtctca
    14281 aagagcttga ttataaggct gaacttagac tttggaattt gctttataca gcaaatcaaa
    14341 actccttgtt tgaatgtgct aatagcgtgg gtgtaggtgg tattgctatg actttagcaa
    14401 aaatgtttgc tatttctagt atgggtgcaa atttaaatag tggctttagt gatgaaaaaa
    14461 tgatttttga tgaaagtgct agtcgtgcta tcgtaggcct tgataaagaa aatgaagaag
    14521 catttttaaa actagcacat gaattgggtg taaaagctac aaaactaggt tttagcacta
    14581 aagagcaaag ttttaaactt gatagtataa atttaagcaa agacgaactt aataaacttt
    14641 attttgatag ctttaaagag caaattcaat gatatttgtt ttaattattt taactatctt
    14701 agtgttttat tggtattata aaacttgggg aaagcaagat tttttaaatt cagtcacgcg
    14761 aggagccaaa ggttttgcta aaggctttgc tcgcggagtt atggaagaga ggatagatga
    14821 atttaaaagg cgtatgaatt actatgtcat cgcacttttg gcaaagatag caaaaagtga
    14881 tggtagggta agcgaaaatg aagcagaaat gatcagtcaa attttagatg caaacgccaa
    14941 agacgaaaga gaaagggctt ttttaaaagc aagctttaat gagcataaag aaaatatcca
    15001 cgatgctttt tatgtggcaa aggatttttt aaaagaagtt cctttaccga aaaatgaacg
    15061 ctttaatgta cttcgcgtac ttgtgtttat ggccttggtt gatgcagatt ttagtgcaaa
    15121 aaagcgtgaa attttagaac agattgcaaa agcttttgat attgcaaaaa gtgagcttga
    15181 taattttatt gcgagtattt caaatttaaa aagtactaaa aaagaactaa gccttgatga
    15241 ggcttatcgt attttagagc tttcaaataa tgcggattta aacgcggtaa aaaaacaata
    15301 tagagcttta gctaaaaaat atcaccctga tattttaaat gcaaacaatg tcagcgaaga
    15361 agagcttaaa aaaggtgtag aaaaatttca aaaaatcaac gaagcttatg aaaaaattaa
    15421 aaagcattta gaaaaatgat tttaaaagaa aaatattttc ctttaagaat cttatctaag
    15481 aacgagtgga ctttatctag tataaattaa atttataaaa atatttcaaa cgaaatttaa
    15541 aaaaaggagt gaatatgaga gcgttattaa gtgtgagcga taaagaaggt atagtagaat
    15601 ttggaaaaga acttgaaaat ctaggttttg agctactttc aacgggcggt acttttaagc
    15661 ttttaaaaga aaatggagta aaggttgtag aagtaagtga atttacaaaa agtcctgagc
    15721 tttttgaagg gcgcgtaaaa actttgcatc caaaaattca cggcggaatt ttacataaaa
    15781 gaagcgatga aagtcatatc aagcaagcaa aagaaaatgg aattttaggc attgatttag
    15841 tttgtgtaaa tttatatcct tttaaaaaaa ccactataat gagcgatgat tttgatgaaa
    15901 ttatcgaaaa tatcgatata ggcggccctg cgatgataag aagtgcggct aaaaattata
    15961 aagatgtgat ggtgctttgc gatccgcttg attatgaaaa gacgattgaa gctttaaaaa
    16021 agggtgaaaa tgatgagaaa tttcgcctaa atttgatgat aaaagcttat gagcatacgg
    16081 caaattatga tgcttatatt gcaaattata tgaatgaaag atttaatagg gggtttggag
    16141 cgagtaaatt catagtaggt caaaaagttt ttgatacaaa atatggcgaa aatccacatc
    16201 aaaaaggagc tttgtatgaa tttgatgcct tttttagtac caattttaag gctctaaaag
    16261 gcgaggcaag ttttaacaat cttactgata ttaacgcagc tttaaattta gcaagtagtt
    16321 ttgataaggc tcctgctatt gctatcgtaa aacatggcaa tccttgcggt tttgcgataa
    16381 aagaaaattt agtacaaagc tatatacatg ctttaaaatg cgatagtata agtgcttatg
    16441 gaggagtggt tgctgtaaat ggaacccttg atgaggcttt agcaaataag atcaatgaaa
    16501 tttatgtaga agtgattatc gcagcaaatg tagatgaaaa agctttggct gtatttgagg
    16561 gtaaaaagcg tattaaaatc tttactcaag aaagtcctta tttgattaga agttttgata
    16621 gctatgattt taaacatatt gatgggggct ttgtatatca aaatagcgat gaagtgggtg
    16681 aagacgagct taaaaatgcc aagcttgtaa gccaaagaga agcaagtcaa gtagaaattc
    16741 aagatcttga gattgctatg aaagttgcaa ctcttacaaa atcaaacaat gttgtttatg
    16801 taaaaaatgg cgctatggta gccataggaa tgggtatgac aagtaggatt gatgcggcta
    16861 aagcagctat tgtcaaagca caagaaatgg gacttgattt gcaaggttgc gttttagcta
    16921 gtgaagcctt ttttcctttc agagatagca tagacgaagc aagtaaagta ggggttaaag
    16981 ccatagtaga accaggtgga agcataagag atgatgaagt gatacaagca gcaaatgagt
    17041 atggtatagc gctttatttt acaggagtga gacatttttt ac
//
LOCUS       DBBXRO010000028        16718 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.028, whole genome shotgun sequence.
ACCESSION   DBBXRO010000028 DBBXRO010000000
VERSION     DBBXRO010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16718
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.028"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(12..671)
                     /locus_tag="ACJFEZ_000668"
     CDS             complement(12..671)
                     /locus_tag="ACJFEZ_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0916806.1"
                     /translation="MENVFNAQNIEFLMQGLVLTLKIALATCIISIIFGTFLAITKNY
                     GDRFSRLLATCYIDIFRNTPLLLWMLAACFVLPSFFPQMPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFSKFFTLFYIILPQTFRKVVPSLLSQIVTTVKDTAY
                     LAGLQIAELTYNSKNILARLTSFDEILATIGFVAVIYFAICFSLSMLVRYYAKKTAYV
                     S"
     gene            complement(682..1434)
                     /locus_tag="ACJFEZ_000669"
     CDS             complement(682..1434)
                     /locus_tag="ACJFEZ_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0916807.1"
                     /translation="MNESVGFVDKLRQLLSSWGLYDESSTNPFAIWKFLDALDNGDAF
                     ISGFIYTLEVSILALLIAIVFGTIGGVMATSKIKILRAYTRVYVELFQNIPLVIQIFF
                     LYFALPGLGIHLDIFTIGVLGIGAYHGAYVSEVVRSGILSVPRGQFEASASQGFTYVQ
                     QMRYIIVPQTIKIILPPMTNQMVNLIKNTSVLLIIGGAELMHSADSYAADYGNYAPAY
                     IFAAILYFIICYPLAYFAKVYEDKLKKAHLTR"
     gene            complement(1436..2215)
                     /gene="peb1A"
                     /locus_tag="ACJFEZ_000670"
     CDS             complement(1436..2215)
                     /gene="peb1A"
                     /locus_tag="ACJFEZ_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HGG0916808.1"
                     /translation="MVFRNSLLKLAALALGACMAFTSANAAEGKLEAIKAKGELVIGV
                     KNDVPHYALLDQATGEIKGFEVDVAKMLAKSILGDENKVKLIAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRVYNFSEPYYQDAVGLLVLKEKNYKSLADMNGATIGVAQAATTK
                     KVINTAAKKIGVKVKFSEFPDYPSIKAALDAKRIDAFSVDKSILLGYKDENNEILPDS
                     FDPQSYGIVTKKDDANFSNYVNDFVKQNKTEIDALAKKWGL"
     gene            complement(2240..2968)
                     /locus_tag="ACJFEZ_000671"
     CDS             complement(2240..2968)
                     /locus_tag="ACJFEZ_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HGG0916809.1"
                     /translation="MIELRNVNKYYGTHHVLKNINLCVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKLRQEAEETAYQYLKVVGLVDKANVYPATLSGGQQQRVAIARALCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISTQRNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     VPSEFFSNPKTERARLFLGKILKN"
     gene            complement(3131..3919)
                     /locus_tag="ACJFEZ_000672"
     CDS             complement(3131..3919)
                     /locus_tag="ACJFEZ_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HGG0916810.1"
                     /translation="MEEKINPSELELNEFIKIINEISGIDLNEKRNILVLKLSKFVSS
                     TGVKTFAEFLSKLQINRQLRQDTLDFVTIGETYFLRELSQLKEIIFYAKSLEKTVNIL
                     SAPCSSGEEVYSMAILGAQNFLKDMMILGIDINSNVIEKAKVGKYQGRTLQRLSESEK
                     RRFFTDIGEQTFSINKSELCTCRFELCNVFEDKFLRLGKFDIIVSRNMMIYFDYDSRI
                     KLMERFYQILADNGRLYVGNADLIPETTFFKKVFSPRGVYYEKI"
     gene            complement(3932..4486)
                     /locus_tag="ACJFEZ_000673"
     CDS             complement(3932..4486)
                     /locus_tag="ACJFEZ_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheB methylesterase domain-containing protein"
                     /protein_id="HGG0916811.1"
                     /translation="MKLLLIGSSTGGPNQLKFLLKDVDIKNTCVVIAQHMSASFIPSF
                     VNQFNKEALSEVSLLNDKEVLANKIYICQKNTILSGNLNLMANWKEVVTSFKPNVDLL
                     FHSAVPLVKTNKILAVILTGMGDDGAKGLFELYKVGVKCLCENEADSIVYGMPKKAKD
                     INPKLRPMSLKEIKQEILNFINEE"
     gene            4655..5092
                     /gene="rpiB"
                     /locus_tag="ACJFEZ_000674"
     CDS             4655..5092
                     /gene="rpiB"
                     /locus_tag="ACJFEZ_000674"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HGG0916812.1"
                     /translation="MLRKKIYIASDHAGFMLKEKICTFLKEKQIPFDDLGTNDPTSCD
                     YPDYAHLLASKIDEQSFGILICGSGIGISIAANRHKNIRCALCNESLSAKLARKHNDA
                     NVLAFGGRLIGIDAAIDMIENFIQTPFDQGRHVKRIQKIEVDC"
     gene            5092..5424
                     /locus_tag="ACJFEZ_000675"
     CDS             5092..5424
                     /locus_tag="ACJFEZ_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916813.1"
                     /translation="MFANWFILTALICATIYLVVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            5421..5969
                     /gene="apt"
                     /locus_tag="ACJFEZ_000676"
     CDS             5421..5969
                     /gene="apt"
                     /locus_tag="ACJFEZ_000676"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HGG0916814.1"
                     /translation="MTKLTQNEQQFLSESIRVIPNFPKEGIIFRDITTLLNNQKALSF
                     LLDHLSKRYQTMNLDFIAGTESRGFIFAAMICAKLNLPFVPIRKPNKLPSNTYSCEYE
                     LEYGTDRVEIHQDAFRNIKNAKILLVDDLIATGGTALASFELIKKAGGECIEACFLMN
                     LKNLGGEEKLQKHCSVYSVLEF"
     gene            6069..6668
                     /locus_tag="ACJFEZ_000677"
     CDS             6069..6668
                     /locus_tag="ACJFEZ_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HGG0916815.1"
                     /translation="MEEFIIRIWNEHVETWGYLILFCWSILEGELGLIFAGLAAHDGK
                     MHVVLAIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLRSQRRKFAVAHLLLQRFGWPII
                     FIQRYMYGFRTVIPMSIGITRYSAKKFAIINLLSAWIWAAITILLAWHFGNLIQNFLT
                     WAKNHWYLAAIMIICFLSLLVFTFKQIEKAILKEKRKKK"
     gene            6665..8116
                     /locus_tag="ACJFEZ_000678"
     CDS             6665..8116
                     /locus_tag="ACJFEZ_000678"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HGG0916816.1"
                     /translation="MIFELSDKKIHGIKADFELVFIQDKNLKPFTNEKDFFKLNNYTG
                     EGILLDLNNKRLFIELKSLNYEDIRLALYTAYKNLEKLNIKSVKLPSILGDCVVRSFT
                     SLVEGVLFGAYKFDKYKSEKKESTLEKFIISAEELNAKKFNLDEAKIGLLRGEILANA
                     TNFAKDIVNEIPEIYTPLKMAEDAQNLAKKNKNITCKICDEKFLAKEKMNAFLAVNRA
                     SAHPPRLIHLSYKAKNAKKRIVFVGKGLTYDSGGLSLKPADYMLTMKADKSGAAAAMG
                     IIKAVAELALELEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSYAQDLKPDLLIDMATLTGACVVGLGEFTSGIMGNNEELQNEFYLSSKKSGEYTT
                     ILHFNPHLKELIKSNIADVSNSASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YIEKSWGYNSFGAGGTGVRMCVNFLIHLLRKNK"
     gene            8113..9216
                     /gene="ychF"
                     /locus_tag="ACJFEZ_000679"
     CDS             8113..9216
                     /gene="ychF"
                     /locus_tag="ACJFEZ_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HGG0916817.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLGKKIEKLNKEARANTKGAK
                     ESLEMANSLLEHLNKGLPASTYLQKEDEIFQALNKELRLLSAKEVIYGANVDENGISE
                     DNGYVKILKDYANKNNHEVIKLCAKIEEELVGLSNEESAEFLSSLGVNESGLDQIIRT
                     AFSKLGLISYFTAGVLEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDFITY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(9223..10608)
                     /gene="argH"
                     /locus_tag="ACJFEZ_000680"
     CDS             complement(9223..10608)
                     /gene="argH"
                     /locus_tag="ACJFEZ_000680"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HGG0916818.1"
                     /translation="MKNEMWSGRFSEASNELLKEFNASLNIDRALYVEDIEGSIAHAT
                     MLENCGILKKDELEAIVKGLEQVRVEIEQNRFVFNIEDEDIHMAIEKRLSELIGSEIG
                     GRLHTARSRNDQVATDFKLFTKKSHLELIMLLKELIQTLLSHARAHKRTIMPSFTHLQ
                     HAQPISFSFYILSYAFMFMRDIKRLQNSLELADFSPLGSCACAGTSYATNRNLSAQIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSASEFGFLTISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGLFDSV
                     KTAKDSLIILNAMLKEVKINEENMLKSCKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEKQGIDISDIEDLSKIDPIFDEKAMKLLDFENSLNSKQSEGSSSVASVEKQI
                     QILEKFLECLG"
     gene            complement(10618..12192)
                     /gene="pckA"
                     /locus_tag="ACJFEZ_000681"
     CDS             complement(10618..12192)
                     /gene="pckA"
                     /locus_tag="ACJFEZ_000681"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HGG0916819.1"
                     /translation="MKKFENLGLENIKKVYHNLSFDELYEHEKKNEEGQCTDNGTFTV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQAITKELFDELLMKARKELSNKEIYVQ
                     DVFCGASLKSRKAIRFVTEIAWQAHFVKNMFIRPNDKELDEFKADFIVYNACKCVNKD
                     YEKNGLNSEVFVIFNIEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKGDVALFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     SEPEIYGAIKRNALLENVVLRSDKSVDYSDASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIDKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITQCEFENFDVFNLAIPKTLAGVESSLLNPINTWKDKDEFIATRNKLAKMFSDNFKRY
                     EDVKEGVEYSQFGPKI"
     gene            complement(12201..13994)
                     /locus_tag="ACJFEZ_000682"
     CDS             complement(12201..13994)
                     /locus_tag="ACJFEZ_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HGG0916820.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMQDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFEMMDKFRSIVGKDANLQTLARGVNTVTLDTGSKELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIKKYGLKHEITITLMDLPPNCQGAHD
                     VPFYERILKEILAAEIPFDSICFKDASGTSNPNKIYETIKMARKNLPQDVHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKNYDLGGLEEEKI
                     LKYEAVLKDSLKEYFLPPEATMVSPLIPFSPMPGGALTANTQMMRDNNILDKFPEVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWEKIAEGYGKMVLGYFGKTPVEPD
                     AEVKKLAAKQLNLEPTTELAIDIADKDETKSIAYVKSLLEKEGIAVSEENIFIAAACK
                     EKGIAYLKGEAKVNVRKNVSAPKQNSTGIDENKFTVSVNGNKYHVEISAGFDKDVNIK
                     SIHKADTQEDIMQDADSSEGIQAGISGNVFKIYINEGEEVKSGQVVMILEAMKMEIEV
                     SAPKDGIIEKICVKTGDSVSENNLVAIYKNN"
     gene            complement(14017..15366)
                     /locus_tag="ACJFEZ_000683"
     CDS             complement(14017..15366)
                     /locus_tag="ACJFEZ_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HGG0916821.1"
                     /translation="MRTYFSKIGFILAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLSIGFSIFLAEVSMGRLSRSDLANAYYTLAKSHARRWRYGGIFTLGGIFVLSFYL
                     VIMGWVLKYALTSLYYLPKNLEQAGSDFSTLISADLSNSILFFSLSFFLTLLIVSKGL
                     IKGIERLNVVIMPSLFIMLIFMLLYCMSFQNGFKQAFSYLFYPDFSNFKLSSIAEALG
                     LAFFTLCLGIGCIVTYSAALSKKINFIKSSIFIVLINLLISFIMGLIVFTFIFEFEAN
                     PNIQGPGIVFVSLMSLFNELGILGYVLAFCFFLALFFAGITSAVSMIEPLTFYVVNNY
                     KISRIKALSFIGFIVFVLGICCILSLNTHFSSLFSIFGKDFFTLLDKVTSNILLPLGA
                     IVSSIFVGFFVDKKRIYKIFSKFVNRQIFTIWLFFIRFISPIAIICIMCYQIFVKIS"
     gene            complement(15380..16714)
                     /locus_tag="ACJFEZ_000684"
     CDS             complement(15380..16714)
                     /locus_tag="ACJFEZ_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HGG0916822.1"
                     /translation="MNSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYAGFTMIGAILIVSFYT
                     LVIGWILKYAYLSISGNLYPELNTSSAEFGKLISSDFVSQFVCFTLIFLIVFYTVSKG
                     VKNGIEKLNVWMMPALFILLVLMLIYAMTKDGFMMAVEFLFVPDFSKISTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPERTNFITSTLNIIFINLLIGLLMGLVVFTFIFEFGFD
                     ASKEGPGLIFVSLATLFQKLGAIGHILGAAFFISLIFAGITSAVSMIEPFAFYLINSF
                     GMSRKKALILIGIIVYTLGILCILSSLDSTAFKIFGLSVFDLLDTLSSKIIMPLGGIL
                     AAIFVGFVIKKEALQILFGPYMKGIFFELWYIFLRFISPLAVIVVMISAFLK"
BASE COUNT         5909 a         2925 c         2395 g         5489 t
ORIGIN      
        1 atacatattt tctaagaaac ataagcggtt tttttagcat aatatcttac aagcatggat
       61 aatgaaaagc atatagcaaa ataaatcaca gcaacaaaac ctatagtagc taaaatttca
      121 tcaaaactcg taagtctagc caaaatattt ttagaattat aagtcagttc tgctatttgt
      181 aaacccgcca aataggccgt atcttttaca gtggtaacaa tttgagaaag caaagacgga
      241 acaacctttc taaaagtttg aggtaaaata atataaaaaa gagtaaaaaa tttactaaat
      301 ccttgagaat aagctgcttc aaattgtcct tttggaatag aatttaaacc accacgtata
      361 atctcagcca taactgaact tgtgtatagc gaaaatccta tagttcccca aaaagcttgt
      421 ggcatttgtg gaaaaaatga tggcaaaaca aaacaagcag caagcatcca taaaagcaat
      481 ggagtatttc taaatatatc aatgtaacaa gttgctaata acctgctgaa tctatctcca
      541 taatttttag taatagctaa aaaagttcca aaaatgatag atataataca agtcgccaag
      601 gcaattttaa gggtaaggac tagaccttgc attaaaaatt caatattttg agcattaaaa
      661 acattttcca taccaaaccc cttatcttgt taaatgagct ttcttaagct tgtcttcgta
      721 aacttttgca aaatatgcca aaggataaca aatgataaaa tataaaatcg ccgcaaaaat
      781 atatgcaggt gcgtaatttc catagtcagc agcataacta tctgcagaat gcataagctc
      841 tgctccacct ataatcaata atacagaagt atttttaatc aaatttacca tttgatttgt
      901 cataggcggc aggataattt ttatagtttg tggaactata atataacgca tttgctgtac
      961 ataggtaaaa ccttgagagg ctgaagcttc gaattgtccc ctaggaacag ataaaattcc
     1021 acttctaact acctcactta cataagcacc atgataagca cctataccca aaacaccgat
     1081 ggtaaaaata tcaagatgaa ttcctaagcc aggcaaagca aaatataaaa agaaaatttg
     1141 tattaccaag ggaatatttt gaaaaagctc aacatacact cgagtgtagg ctcttaggat
     1201 tttaatttta cttgtggcca tcacaccacc tatagttcca aaaacaatcg ctataagtaa
     1261 tgcaagaatg ctcacttcta aagtataaat aaaaccgcta ataaaagcat ctccattgtc
     1321 caaagcgtct agaaatttcc aaattgcaaa aggatttgta ctactttcat catacaaacc
     1381 ccaagaacta aggagttgcc ttaatttatc cacaaagcct acactctcat tcattttata
     1441 aaccccattt tttagctaaa gcgtcgattt cagttttgtt ttgttttaca aaatcattga
     1501 cataatttga aaaatttgca tcatcttttt ttgtaactat gccataactt tgaggatcga
     1561 aactatcagg taaaatttca ttattctcat ctttataacc tagtaaaata gatttatcaa
     1621 ctgaaaacgc atcaattctt tttgcatcta aagctgcttt tatgctagga taatcaggaa
     1681 attcgctgaa ttttacttta acacctattt ttttagccgc agtattgata acttttttag
     1741 tagttgctgc ttgagctacc cctatagtag caccattcat atctgctaaa gatttataat
     1801 ttttctcttt taaaactaaa agccctacag catcttgata atacggctct gaaaaattat
     1861 acactctttt tctctctgga gtgatagtaa aagttgctat aaccgcatca acgctaccat
     1921 tatcaagtaa tggacctctt gttttagcat ttactgctat aagtttaact ttattttcat
     1981 ctcctaaaat actcttagca agcattttag caacatcaac ttcaaagcct ttaatttcgc
     2041 ctgtagcttg atcaagtaaa gcatagtgtg gtacatcatt ttttacacct ataaccaact
     2101 ctcctttagc cttgatagct tcaagttttc cttcagctgc atttgcacta gtaaaagcca
     2161 tacaagctcc taaagcaagt gctgctaatt ttaataaaga atttctaaaa accattgttc
     2221 tctcctttta aaatttggtt taatttttaa gaatttttcc taaaaagagt cttgctcttt
     2281 cagttttagg attggaaaaa aactcactag gaacattttc ttccacaata gcaccatctt
     2341 ccatgaaaat aattctatcg gcaacttctt tagcaaaacc catttcatga gttaccacaa
     2401 ccatagttgt atttctttgt gtagaaattt ctttcattac atctaaaact tcttgtatag
     2461 tctcaggatc aagtgctgaa gtaggttcat caaacaagat ataaggtttt ttagtacata
     2521 gcgctcttgc gatagcaaca cgttgttgct gaccacctga aagcgtggct ggataaacat
     2581 ttgccttgtc tacaagtcca accaccttaa gatattgata ggctgtttct tcggcttctt
     2641 ggcgtaattt tttttgaagt ttcataggag ctaaagttaa attttgcaaa acagtcatat
     2701 gaggataaag attgaaatgt tgaaaaacca tagcacaata tttcctacaa atttcaatct
     2761 tatttttatg atttaaaaca agattattta caacaacttc acccgaactc acctcttcaa
     2821 gtccattcat gcagcgaata gtagtacttt ttccacttcc gctagggcct atgataacaa
     2881 gtttttcacc ttctttaaca caaaggttaa tatttttaag aacatgatgg gttccataat
     2941 atttatttac atttcttaac tctatcaaaa tctttccttt tttgattaaa cttaaaaatt
     3001 aataataaca agggtttatt atattgacaa tattatagca ccaaaatcaa aatttaagct
     3061 aaaaatagta actttatttt agcgaagata taaaaaagtg taactttttg taaaatttaa
     3121 gaaaatataa tcaaattttt tcatagtaca cacctcgagg tgaaaaaact ttcttaaaaa
     3181 atgtggtttc aggaatcaaa tcggcattgc ccacatacaa cctaccgtta tcagctaaaa
     3241 tttgataaaa acgctccatt aatttaattc tagaatcata gtcaaaataa atcatcatgt
     3301 tcctagagac aataatatca aatttaccca gtcttaaaaa tttatcttca aaaacattac
     3361 ataattcaaa tctacatgtg caaagctcgc ttttattaat gctaaatgtt tgctctccaa
     3421 tatctgtgaa aaatcttctt ttttcacttt cgcttaaacg ctgtaaagtt ctaccttgat
     3481 atttacccac ctttgctttt tcgatgacat ttgaatttat atcaattcct aagatcatca
     3541 tatccttaag gaaattttga gctcccaaaa tcgccataga atacacctct tcgccactag
     3601 aacaaggagc acttaaaata tttactgttt tttcaagact tttagcataa aaaataattt
     3661 cttttaattg cgacaattct cttaaaaagt atgtttcccc tatagtaaca aaatctaaag
     3721 tgtcttgtct aagctgtcta tttatttgaa gtttgcttaa aaattcagca aaggttttta
     3781 cacccgtact tgaaacaaat tttgataatt ttaaaactaa aatatttctt ttttcattta
     3841 aatctatacc gctgatttca ttaataatct taataaattc attaagctct aattcgctag
     3901 gattaatttt ttcttccata aatttaaacc ctcattcttc atttataaaa tttaaaattt
     3961 cttgtttaat ttcttttaaa ctcataggcc ttagttttgg atttatatct tttgcttttt
     4021 ttggcatacc atatacaata ctatcagcct cattttcaca caaacattta actcctactt
     4081 tatacaattc aaacaatccc ttagccccat catctcccat gcctgttagt attacagcta
     4141 aaattttgtt tgtctttacc aaaggtacag ctgagtgaaa caacaaatct acatttggtt
     4201 taaagcttgt gacaacttct ttccagtttg ccataagatt taaatttcct gataaaatag
     4261 tatttttttg acaaatataa attttatttg ccaaaacctc tttgtcgttt aaaagactta
     4321 cttcgcttaa ggcttcttta ttaaactgat ttacaaaaga aggtataaaa cttgcactca
     4381 tatgttgagc tataactacg caagtatttt ttatatccac atcttttaat aaaaacttca
     4441 gctgattagg gcctccggta gatgatccta tcaataggag tttcatttaa ttttccttct
     4501 atttgttaaa atggattaaa attcttaaaa tgtatattgt aacatatata caaaaaataa
     4561 agcttagttt taaatttatt ttgaaaacaa aaagcttttt ttatgatttg ttatgttaat
     4621 atagatgctt taatttttaa attttggatt ttttatgctt agaaaaaaaa tttatattgc
     4681 tagcgatcat gcgggtttta tgcttaaaga aaaaatttgt acctttctta aagaaaagca
     4741 aattcctttt gatgatcttg ggacaaatga tcctactagt tgtgattatc cagattatgc
     4801 acatttgtta gcttctaaaa tagatgaaca aagctttgga attttaattt gtggttcagg
     4861 gataggaatt tccatcgctg ctaatcgtca taaaaacatt cgctgtgcct tatgtaatga
     4921 aagccttagt gctaaacttg ctagaaaaca caatgatgca aatgttttag cttttggagg
     4981 tagattaata ggcattgatg cagctatcga tatgatagaa aattttattc aaaccccttt
     5041 tgatcaaggt agacatgtaa aaagaattca aaaaattgag gtagattgtt aatgtttgca
     5101 aattggttta ttttaactgc acttatttgt gctactattt atctagttgt tatgttgttt
     5161 tattataaaa ccctgcttaa taaagaaaaa acttcaaaag attttataaa aaacaatctt
     5221 gatgatactg aaatagtcat tagaaaacta caaattcaac ttcaacgcag tcttgggaat
     5281 atcgatattt taaccgaaga gctcaataaa ataaaagcgg atttaacttc tctaagaaca
     5341 agaaattctc aataccgttt agaaaatgat aaactaagac aaagaattaa agagctagaa
     5401 gcaaaaatcg aggcattatt atgacaaaac ttacacaaaa cgaacagcaa tttttatcag
     5461 aaagcatacg cgttattcca aattttccaa aagaaggtat tatctttcga gatattacaa
     5521 ccctacttaa caatcaaaaa gccttatctt ttttactgga tcatttaagt aagcgttatc
     5581 aaactatgaa tttagatttt atagcaggaa ctgaaagcag aggttttatt tttgcggcaa
     5641 tgatttgtgc taagctaaat ttaccttttg ttcctatacg caaacccaat aaacttccat
     5701 caaataccta ttcttgcgag tatgaacttg agtatgggac agatagagta gaaattcatc
     5761 aagatgcatt tagaaatata aaaaatgcaa aaattttgct tgtagatgat cttatagcta
     5821 caggtgggac agcacttgcc tcttttgaac ttattaaaaa agcaggagga gaatgtatcg
     5881 aggcttgttt tttaatgaat ttgaaaaact taggcggtga agaaaaatta caaaagcatt
     5941 gttctgtata tagtgtttta gaattttagg agggtgcgat gagaaaatgg tttaaatttt
     6001 ttatctttat cgttttaatt gctctaataa tttatgtgat tcatggtttg gttaaaaatg
     6061 atttctcctt ggaagaattt attataagaa tttggaatga acatgttgaa acttggggct
     6121 acttgatact tttttgctgg agtattttag agggtgagct tggacttatt tttgctggac
     6181 ttgcagccca tgatggaaaa atgcatgtag tattagctat atttatagct ggcttgggtg
     6241 gctttgttgg ggatcaaatt tatttttata taggaagata taacaaacgc tatattcaaa
     6301 agaaactccg ttcgcaaagg cgtaaattcg ccgtagcgca cttactttta cagcgttttg
     6361 gttggcctat tatttttata caacgctata tgtatggttt tagaactgta atccctatga
     6421 gcataggtat tacgcgttat agtgctaaaa aatttgccat tatcaatctt cttagcgctt
     6481 ggatttgggc tgctattacc atacttttag cttggcattt tggtaattta atccagaatt
     6541 ttttaacctg ggctaaaaat cattggtatt tagctgctat tatgataata tgttttttat
     6601 ctttacttgt tttcaccttt aaacaaattg aaaaagctat acttaaagaa aaaaggaaaa
     6661 aaaaatgata tttgaattaa gtgataaaaa aattcatggt ataaaagcag attttgaact
     6721 tgtttttata caagataaaa atctaaaacc attcacaaat gaaaaagatt tttttaaatt
     6781 aaataactat acaggcgagg gaattttact cgatttaaac aataaaagat tatttataga
     6841 acttaaaagt ttaaattatg aggatataag attagcactt tacactgctt ataaaaattt
     6901 agaaaaatta aacattaaaa gcgtaaaact tcctagcata ttaggtgatt gcgttgtgag
     6961 aagttttact tctttggttg agggtgtgct ttttggagct tataaatttg ataaatacaa
     7021 aagcgaaaaa aaagaaagca ctttagaaaa atttataatt tctgccgaag aactaaatgc
     7081 taaaaaattt aatctcgatg aagcaaaaat aggtctttta cgcggtgaaa ttctagccaa
     7141 tgcgacaaat tttgccaaag atatagttaa tgaaattcct gaaatttata ctcctttaaa
     7201 aatggcggaa gatgctcaaa atttagctaa aaaaaataaa aatatcacat gcaaaatttg
     7261 cgatgaaaaa tttcttgcta aagaaaaaat gaatgcattc ttagctgtca atcgtgcttc
     7321 tgctcatccg ccgcgtctga tccaccttag ctataaagct aaaaatgcta aaaagcgtat
     7381 agtatttgta ggcaaaggct taacttacga tagtggtggc ttgagcctaa aacctgctga
     7441 ttatatgctt actatgaaag cggataaaag cggagctgca gctgcgatgg gaattattaa
     7501 agcggttgcc gagctcgctt tagaattaga agtacattgc atcttaggtg caactgaaaa
     7561 tatgataggt ggaaacgctt ataaaccaga tgatgtttta atttcgcgcg aaggcgtgag
     7621 tatagaagta agaaataccg atgctgaagg gcgtttggtt ttagctgatt gtttatctta
     7681 tgctcaggat ttaaaacctg atttactcat tgatatggcg actcttacag gagcttgcgt
     7741 tgtggggctt ggggaattta caagtggtat tatgggaaat aatgaagaat tgcaaaatga
     7801 attttattta agctctaaaa aaagtggaga atatacaacc atactacact ttaacccgca
     7861 tttaaaagaa cttataaagt caaatattgc tgatgttagt aattctgctt ctagtcgtta
     7921 tggtggtgca attacagctg ggttattttt agataaattc atacgcaaag aatataaaga
     7981 taaatggctc caccttgaca tagcaggacc tgcttacata gaaaaatctt ggggctataa
     8041 tagctttggt gcgggtggaa caggagttag aatgtgtgtt aattttttaa ttcatctttt
     8101 aaggaaaaat aaatgagttt aagcgtcggt atagtaggtc ttccaaatgt tggaaaatca
     8161 actactttta atgccttaac caaggcacaa aatgcacaaa gtgcaaatta tcccttttgt
     8221 accatagaac ctaataaggc tatggttgaa gttcctgatc taagattaaa tgaacttgcc
     8281 aaaattgtaa aacctgaaag aattatgcat tcattgatag aatttgtaga tattgcaggg
     8341 cttgtaaaag gtgcgagcaa gggcgaggga ttgggaaata agtttctctc caatatacgt
     8401 gaaacagaag taattttaca cattgtgcga tgttttgatg aagaaaacat cacccatgtt
     8461 gaaggaggcg ttgatccttt aagggatgtt gagatcatta atacagagct tattttagca
     8521 gatatagaac agcttggtaa aaaaatagaa aaactcaata aagaagctag agcaaatacc
     8581 aaaggtgcaa aagaaagtct agaaatggca aattctttgc ttgaacattt aaataaaggt
     8641 cttccagcta gcacctattt gcaaaaagaa gatgagattt ttcaagcttt aaataaagag
     8701 ctaagacttc tttctgccaa agaagtgatt tatggggcaa atgttgatga aaatggtatt
     8761 agcgaagata acgggtatgt aaaaatttta aaagactatg ctaataagaa caatcacgaa
     8821 gttatcaagc tttgtgctaa gatagaagaa gaattagttg gcttaagtaa tgaggaaagt
     8881 gctgaatttc taagctcttt aggtgtaaat gaaagtgggc ttgatcaaat catacgcact
     8941 gctttttcta aacttggact cataagctat tttacagcag gagttttaga agtgcgttct
     9001 tggactatta aaaaaggctg gaaagctcca aaagctgcta gcgtgattca taatgatttt
     9061 gaaaaaggtt ttatcaaagc agaagtgatt tcttatgaag attttatcac ctacaaagga
     9121 gaaaatggcg ctaaagaggc gggaaaattg cgtcttgaag gaaaagatta tatcgtctta
     9181 gatggcgatg tgatgcactt tagatttaat gtttaggcaa aattagccta aacattcaag
     9241 aaatttttct aaaatttgaa tttgtttttc tacactagca actgagcttg aaccttcact
     9301 ttgtttagaa tttaaagaat tttcaaaatc aagcaatttc atcgcttttt catcaaagat
     9361 aggatctatt tttgaaagat cttcgatatc acttatatca atcccttgtt tttcagcttg
     9421 tgcgaccaca ttaccgacta taaaatgcgc ttttctaaaa ggaatatttt tttctcgcac
     9481 taaataatct gccaaatctg tagccaacaa atgccctttt ttgcaagatt ttaacatatt
     9541 ttcttcattg atttttactt cttttaacat agcatttaaa ataatcaaac tatcttttgc
     9601 tgttttaaca ctatcaaaaa gtccttcttt atcttcttgc atgtctttat tgtaagctaa
     9661 aggaagtgcc ttcataatcg ttaaaagaga aatcaaattt ccataaacac gccctgtttt
     9721 tccgcgtata agttcgcaaa catcgggatt ttttttctgt ggcatgatag aacttcctgt
     9781 tgaaaaacta tcgcttatgg ttaaaaatcc aaattctgaa gcagaaaata aaatcatctc
     9841 ttcgcaaagt cttgaagtgt gtgtaaaaat cactgctata tcataaagta aatcaagcgc
     9901 aaaatcccta tcactcactc catccatggc atttggcata atgtctttaa agcctaaaat
     9961 ttgagcgcta agattgcgat ttgttgcata gctagttccc gcacaagcac aagaacctag
    10021 cggggaaaaa tccgcaagct ctaaactatt ttgcaaacgc ttgatatcac gcataaacat
    10081 aaaagcatag cttaagatat aaaaagaaaa acttataggt tgtgcatgtt gcaaatgcgt
    10141 aaagcttggc ataatagttc ttttatgcgc tctagcatga gaaagtagag tttggataag
    10201 ttcttttaaa agcattataa gttctaaatg ggactttttg gtaaataatt taaaatcagt
    10261 tgcaacctga tcattgcgac tgcgagctgt gtgaagtctt ccgcctattt cacttcctat
    10321 aagctcactt aaacgctttt ctatagccat atgaatgtct tcatcttcta tattgaaaac
    10381 aaagcgattt tgctctatct cgactctaac ctgctctaaa ccttttacaa tagcctctag
    10441 ctcatctttt tttaagattc cgcaattttc aagcatagta gcatgagcaa tagaaccctc
    10501 tatgtcttcc acatacaaag ctctatctat atttaaactt gcattaaatt cttttaagag
    10561 ttcgttactt gcttcgctaa agcgtcctga ccacatctca tttttcatca atgcgcctta
    10621 aattttaggt ccaaactgac tgtattctac accctctttg acatcttcat agcgtttgaa
    10681 attatcgctg aacatttttg ctaatttatt tctagtggcg ataaattcat ccttatcttt
    10741 ccaagtattg ataggattta aaagagagct ttccacacca gctaaagttt taggaatagc
    10801 taaattaaat acatcaaaat tttcaaattc acactgtgta atacttccat ctaaaatagc
    10861 attaatgcaa gctctagtag cctttatact cattcttttg cccacgccat agcttccacc
    10921 gctccagcct gtattaacaa gataaacatt tacttcatgt ttgtcaattt tttctccaag
    10981 caatcttgca taaactgttg gatgcaaagg cataaaaggc tcgccaaagc aagctgaaaa
    11041 agtagcttga ggctctgtaa tccctctttc tgttccagct acttttgctg tataaccact
    11101 taaaaaataa tacatagcct gctctttgct aagtttgctt acaggaggta aaattccaaa
    11161 agcatctgca cttagaaaaa taatattttt tggatgacct gcttttaagc ttggttcatg
    11221 attttctata tgttctatag gataagaaac tctagtattt tcagtctttg aagcatcgct
    11281 ataatctacg ctcttatcac ttcttaaaac cacattttcc aaaagtgcat ttctcttaat
    11341 cgctccataa atttcaggtt cactctcagg atcaagattg atagtttttg cataacatcc
    11401 accctcgaag ttaaacactc cttcatcatc ccatccatgc tcgtcatcgc ctataagctt
    11461 tctttttgga tcggtagaaa gagttgtttt tccagtgcca ctcaggccaa agaaaagtgc
    11521 aacatcgcct ttttcaccaa catttgcact acaatgcata gaaagcttat tttcaagagg
    11581 tagccaataa ttcatcatgg aaaaaattcc ttttttcatc tcgccgccat accaagttcc
    11641 gccaataact gcaatatttt cttctatgtt aaaaatcaca aaaacttcag aatttaaacc
    11701 attcttttca tagtctttat tgacacattt gcatgcatta taaacgataa aatcggcttt
    11761 aaattcatca agctctttat cattaggacg aatgaacata ttttttacaa aatgtgcttg
    11821 ccatgcaatt tcagttacaa atcttatagc cttacgactt ttcaaagaag cgccgcaaaa
    11881 aacatcttgc acataaattt ctttattgct taattctttt ctagccttca ttaaaagctc
    11941 atcaaaaagt tctttagtga ttgcttgatt gactttaccc caagctatat acttgctaga
    12001 agggtcttgt tttacaaaat atttatcctt tggacttctt cctgtaaaaa ttcccgtatc
    12061 tacagtaaaa gttccattat ccgtgcattg cccctcttca ttctttttct catgttcata
    12121 gagttcatca aaacttaaat tatgataaac tttttttata ttttccaaac ctaaattttc
    12181 aaatttcttc atttaaaacc tcaattattt ttatatattg cgactaaatt attttcgcta
    12241 acactatcac ccgtcttgac acaaattttt tctattatgc catcttttgg tgcactaacc
    12301 tctatctcca ttttcatagc ttctaaaatc ataacaactt gacccgattt tacctcttca
    12361 ccttcattaa tataaatttt aaatacatta cccgaaattc cagcttgtat accttcgctt
    12421 gaatccgcat cttgcattat atcttcttga gtatctgctt tgtgaatact tttaatattt
    12481 acatctttat caaagcctgc acttatttct acatgatatt tgtttccatt aactgaaact
    12541 gtaaatttat tctcatcaat accagtagaa ttttgttttg gcgcagacac attcttgcgc
    12601 acattaactt tagcttcacc ttttaaatac gctatacctt tttctttaca agctgctgca
    12661 atgaaaatat tttcctcgct taccgctatg ccctcttttt caagtaaact cttaacatag
    12721 gctatacttt tggtttcatc cttatccgct atatcgatag caagttctgt agtgggctct
    12781 aaatttagct gtttagctgc aagtttttta acttcagcat caggctcgac aggagtttta
    12841 ccaaaatatc ccaataccat ttttccataa ccttcagcaa ttttttccca aggtccaaac
    12901 atgacattgt taaaagcttg ttgaaaataa aattgagaaa caggagttac agaagttcca
    12961 aaaccacctt tttccacaac ttcacgcata gcatgaataa cttctgggaa tttatcgagt
    13021 atattattat ccctcatcat ttgagtattg gcagttaaag ctcctcctgg cataggagag
    13081 aatgggatta aaggacttac cattgtagct tcaggcggta aaaaatactc ttttaaagaa
    13141 tcttttaaaa ctgcttcgta ttttaaaatc ttttcttctt ctaatccacc caaatcataa
    13201 tttttacctt ttaaagcatg catcatagtt aaaatatcag gctgtgaagt acccccactc
    13261 acaggagctg ctgctaaatc tataccatca accccagctt ccaatgctgc taaataacaa
    13321 gctatactca ctcctgcagt ttcatgcgta tgaagtctta tatgcacatc ttgtggtaaa
    13381 ttttttctag ccattttaat ggtttcataa attttatttg gatttgaagt tccgctagca
    13441 tccttaaaac aaatactatc aaaaggaatt tcagcagcta aaatttcttt taatattctt
    13501 tcataaaatg gtacatcgtg ggcaccttga caatttggtg gtaaatccat taaagtaatt
    13561 gtgatttcat gttttaagcc gtatttttta atacattctc cactgaattt aagattattt
    13621 acatcgttta aagcatcgaa atttctaatt gttgtagtgc catgcttagc aaaaagtttg
    13681 gcatgtaaat caataagctc tttacttcct gtatccaaag taacagtatt tacacctctt
    13741 gctaaagttt gcaaattcgc atcttttcca acaatcgaac ggaatttatc catcatttca
    13801 aaagcatctt cattaaggta aaaataaagg ctttgaaacc ttgctccacc tccaaattca
    13861 aaatgagtta tccctgcttc tttggctgct tctactgctg gaaaaaaatc ttgcattaag
    13921 actctagccc cgtaaacaga ttgaaaacca tctctaaaac ttgtatccat aacatctata
    13981 aattttttag ccatttattt tccttatatg aaataattaa gaaattttaa caaaaatttg
    14041 ataacacatt atgcaaataa ttgctatagg tgatataaaa cgaataaaaa atagccaaat
    14101 tgtaaatatt tgacgattta caaatttgga aaatatttta taaattcgct ttttatccac
    14161 aaaaaaacct acaaatatag aacttacaat cgcccctagg ggaagtaata tattagaagt
    14221 caccttatct aaaagagtaa aaaaatcttt tccaaaaata ctaaataaac tagaaaaatg
    14281 agtatttaaa gataaaatac aacaaattcc caatacaaaa acgataaaac ctataaatga
    14341 taaagcttta atacgagaaa ttttataatt attaaccaca tagaaagtca gaggctctat
    14401 cattgaaacc gcagaagtaa tacctgcgaa aaaaagtgcc aagaaaaaac aaaaggctaa
    14461 aacataacct aaaattccaa gctcattaaa taaactcatc aaagatacaa atactattcc
    14521 tggaccttgt atatttggat ttgcctcaaa ttcaaatata aaagtaaaaa ctataagccc
    14581 catgataaat gagataagaa gattaatcaa aactataaaa atagaacttt tgataaaatt
    14641 tatttttttg cttaaagccg cagaataagt cactatacag cctattccta aacataatgt
    14701 aaaaaaagca agccctaaag cttcagcaat agaacttaat ttaaaatttg aaaaatcagg
    14761 ataaaaaaga taagaaaaag cttgcttaaa accattttga aaactcatac aataaagtag
    14821 cataaaaata agcatgataa aaagacttgg cattataacc acattcagtc tttcaatgcc
    14881 ttttattaaa cccttagaca caatcaataa agtaagaaaa aaagataaag aaaaaaataa
    14941 aatagaattg cttaaatcag cactgattaa agtagaaaaa tcacttcctg cttgctctaa
    15001 atttttaggt aaataataaa gactagtcaa ggcatatttt aaaacccaac ccataattac
    15061 caaataaaaa gaaagaacaa aaattccacc taaggtgaaa attccaccat aacgccatct
    15121 tctggcatga ctttttgcaa gagtatagta agcatttgct aaatcacttc tacttaaacg
    15181 ccccattgat acttcagcta aaaagatact aaaccctata ctaagagtaa aaaataaata
    15241 caaaagaaca aaaacaaaac cgccattttc agcgcttagg gttggaaatt tccaagcatt
    15301 tcccaaacct acagccccgc ctgcaacagc taaaatgaaa cctatttttg aaaaatatgt
    15361 tctcattttt aatccgattt tactttaaaa aagcactaat cataacaaca ataaccgcca
    15421 aaggcgaaat aaatcttaaa aagatatacc aaagttcaaa aaatataccc ttcatataag
    15481 gaccaaataa aatttgcaaa gcttcttttt tgatcacaaa acccacaaaa atagcagcta
    15541 aaattccacc caaaggcata ataattttac ttgataaagt gtctaaaaga tcaaaaacac
    15601 taagaccaaa aattttaaat gcagttgaat ccaaagaaga caaaatacac aaaattccta
    15661 aagtataaac tataattcct atcaaaatta aagctttttt acggctcatt ccaaagctat
    15721 taattaagta aaaagcaaaa ggctctatca ttgaaactgc tgaagtaata cctgcaaaaa
    15781 tcaaagatat aaaaaaagct gctcctaaaa tatgtcctat agctccaagt ttttgaaata
    15841 aagtcgctaa agaaacgaaa atcagacctg gaccctcttt gcttgcatca aaaccaaact
    15901 caaagataaa ggtaaaaacg actaaaccca ttaaaagtcc gattaaaaga ttgataaaaa
    15961 tgatatttag agtgctggta ataaaatttg tacgctcagg taaacttgcc gaataagtga
    16021 taatagtccc tacccccaaa gataaactaa aaaaagcaag tcctaaagcc tcaagcacat
    16081 tagaagtact aatcttagaa aaatcaggca cgaaaagaaa ttcaaccgcc atcataaaac
    16141 catctttagt cattgcataa ataagcatca aaacaagtaa gataaataaa gctggcatca
    16201 tccaaacatt tagtttttca atgccatttt ttacaccctt agatactgtg taaaaaacaa
    16261 ttaaaaaaat caaggtaaaa catacaaatt ggcttacaaa atcacttgaa attaattttc
    16321 caaattcagc agaacttgta ttaagttcag gatataaatt tccgctaata cttaaatatg
    16381 catatttaag tatccagcca attactaaag tataaaaaga aacgattaaa attgctccta
    16441 tcatagtaaa acctgcataa gaccaagctt ttttatttga aggagcaagt ttttcataag
    16501 cattaacagg atctttttca ctaatctttc ctatgctaag ctcggctaga aaaataacaa
    16561 aacctacacc caaagttaaa ataatataaa gcaatataaa agcagaaccg ccgctttgtc
    16621 ctaccaaagt aggaaatttc caagcatttc ctaagcccac agctgaaccg gcaactgcta
    16681 aaataaaacc tattttcgaa aatttagagt tcaaaatt
//
LOCUS       DBBXRO010000029        15513 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.029, whole genome shotgun sequence.
ACCESSION   DBBXRO010000029 DBBXRO010000000
VERSION     DBBXRO010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15513
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.029"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(85..1176)
                     /gene="aroC"
                     /locus_tag="ACJFEZ_000685"
     CDS             complement(85..1176)
                     /gene="aroC"
                     /locus_tag="ACJFEZ_000685"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HGG0916823.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCVIDGMPAGVKFDEEFLQSELD
                     KRKGGSKFATPRKEGDRAQVLSGVFEGYTTGHPIAMVVFNENTHSKDYDNLKDLFRPA
                     HADFTYFHKYGIRDHRGGGRASARESVARVAAGAVAAMLLREFGICVQSGVFGVGTFV
                     SNLKEKEFDFEFAKKSEIFCLDPKLESDFKNEILSARSSKDSVGASVYTRAKGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSQNNDALKGGEFLSNHSGGI
                     LGGISNGQDLILKTYFKPTPSIFLKQSSMDKFGNDLEFELKGRHDPCVGVRGSVVVSA
                     MVRLVLADCLLLHASANLNNLKNAYGIKK"
     gene            complement(1176..1850)
                     /gene="rnc"
                     /locus_tag="ACJFEZ_000686"
     CDS             complement(1176..1850)
                     /gene="rnc"
                     /locus_tag="ACJFEZ_000686"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HGG0916824.1"
                     /translation="MKNIELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENN
                     GGKEKPSILSDALEAIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQ
                     EITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITL
                     EKLGAL"
     gene            complement(1837..2277)
                     /gene="rnhA"
                     /locus_tag="ACJFEZ_000687"
     CDS             complement(1837..2277)
                     /gene="rnhA"
                     /locus_tag="ACJFEZ_000687"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HGG0916825.1"
                     /translation="MRHIEIYTDGSCLKNPGFGGWAYILRYNQHQKEGFGAEANTTNN
                     RMELKAIIEALKALKEPCEISLFTDSNLMVQSINEWLEAWIKKDFKGKKNVDLWKEYI
                     DVAKPHKIKAYWIKAHNGHLENERCDTLAREAALKIARENDEKY"
     gene            complement(2264..3247)
                     /locus_tag="ACJFEZ_000688"
     CDS             complement(2264..3247)
                     /locus_tag="ACJFEZ_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDC27 family protein"
                     /protein_id="HGG0916826.1"
                     /translation="MDFFFVEYRDPLVGLIILTVLIFVVAVANYIWKVFASKDEEQKL
                     EKFIKKFEMDNIHKDLLRNEGLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKSKDKQ
                     EREFIFFALAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRKYKENLE
                     LLGCLFELGENVKEEKEFLKALDFLASSLSDEEKKEHILKLQTDNNPMLGRFVFEKYH
                     IFLNQDFSSICDLLYKENKAFNLQNKEYFEFFYALGLIEDEESKDVNFKNSNFKMLKI
                     LKENSFKARLEFSYRCTECKSVMPLFFYHCPVCYEFNTCQIIYEVKNNETY"
     gene            3317..5143
                     /gene="dnaG"
                     /locus_tag="ACJFEZ_000689"
     CDS             3317..5143
                     /gene="dnaG"
                     /locus_tag="ACJFEZ_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HGG0916827.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCVCPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFTDAVEKIANLCNFTLSYTKEKNE
                     NKKELRTILPSLNAYFKSNLKHHKEALDYLYKRTLNDQDIAKFELGFAGSSEDSIRLF
                     HNEKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVAAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEMIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTENHLPLIRRYEAKVILCFDNDEAGLNAATRSAFLLSTHKIDGKVALLEGGKDPAE
                     LVANNQSAKLHTLLEKGMDLGEFYIRRILSSFSLNSALDKQKALENIQKYTFSLEPLV
                     ASSYVGLVSKLLGVDEKLIVLTSNRKPSKTINFNTSFQQTQNHNPKSHITELELLNYL
                     KNNPNMHELFIKISDIRCFKHKVLLEKILEHKSYEDSDIREFESKNFSKDLSQIEFLW
                     GICKVNLAFLNHINITNSYLALKKQIFTLIEKNFVLLSKNLNDHELVEFLKENLFLLK
                     NEKDEEKLEALFKNLHRFFSAKNLDIKILKNNSENDYNEEPF"
     gene            5238..5510
                     /locus_tag="ACJFEZ_000690"
     CDS             5238..5510
                     /locus_tag="ACJFEZ_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HGG0916828.1"
                     /translation="MMPFSDEELINPVKASLDKSMPMLERDGGGLEFLGIKNGVVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIVNLNGGAEDFAKL"
     gene            5497..6054
                     /locus_tag="ACJFEZ_000691"
     CDS             5497..6054
                     /locus_tag="ACJFEZ_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HGG0916829.1"
                     /translation="MQNYKKLGIEHFLRKDFKTAKIYFSLAYEKRKNKRLFHFITLCD
                     LALKSPKEALLLFEFYLEHYQIKNIDKDLEEILSTIELKNEKNTDETENEIQEAHTLN
                     YKDFLKSEEQIGFKKSFENIIHSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIESVM
                     PHFWANERFIKLQEKLIGFKSEIKA"
     gene            6038..7321
                     /locus_tag="ACJFEZ_000692"
     CDS             6038..7321
                     /locus_tag="ACJFEZ_000692"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HGG0916830.1"
                     /translation="MKLKLDQSFITDNTLECEKDCYFLKTAQNMNFASDALEKGAKII
                     DVEECKKLLKIDENIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQLATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFTNITQ
                     DHLDFHGNFENYKAAKELFFTDESLKFINKDTLMIKFNVRNAFTYGIENPSLYQVKAY
                     SLEDGISAIVVLKDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNLKDLEKAISGFG
                     GVCGRVEQVANGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRKEAINKALKLKEKDDL
                     VVILGKGDENTQEIKGIKHPFSDKAVVNEILKNQG"
     gene            7325..7630
                     /locus_tag="ACJFEZ_000693"
     CDS             7325..7630
                     /locus_tag="ACJFEZ_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HGG0916831.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDGSLLEDKESLQILLISAINDVLAMVAQNRSSLASDVLGGFGKL"
     gene            7627..8718
                     /locus_tag="ACJFEZ_000694"
     CDS             7627..8718
                     /locus_tag="ACJFEZ_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HGG0916832.1"
                     /translation="MKFLFFLVTFLISLSAIERPKFEDFAAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNVKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWIGI
                     WDPNRAYIGHIKYLAQNIDEKDQLDFSTKVGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFAVRENKIYVNNVRKSGQFLINDEIISVDGTLVKDIRKLNEKI
                     LFADRGSTLYFQVLRDNVDLNISTEVFAKDLSKFNLPSNKPKPKPTNFRSNIGLSVNS
                     SLIVTKVDAGSKAALAGFMVGDKILRANNVTLKDFKELQTLLGTGNDFNILIERKSDK
                     LPLLGLNNDLGGVHSGGDGKFQFFIRLVK"
     gene            8715..9554
                     /locus_tag="ACJFEZ_000695"
     CDS             8715..9554
                     /locus_tag="ACJFEZ_000695"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HGG0916833.1"
                     /translation="MKELFIKHLENHLPKVQSFHPFFNEALAKMLKAGGKHFRAQLLL
                     GVVQNKAPHLIPNALNAALALEFIHTYSLIHDDLPAMDNADLRRGTPTLHKSYDETTA
                     ILVGDALNTEAFLLLSNLNLKESIKINLIRTLAFNAGINGMILGQAIDCYFEDKKLNL
                     EELEFLHTHKTAKLIAAALKMGCEICELDEKESEKIYQIGLKLGLIFQINDDIIDETM
                     SEEESGKPSKHDEHKNSFVNLLGLEKAIQSKENLINECKNDLGDLDANLAHMIKSLMI
                     KYL"
     gene            9564..11462
                     /gene="tkt"
                     /locus_tag="ACJFEZ_000696"
     CDS             9564..11462
                     /gene="tkt"
                     /locus_tag="ACJFEZ_000696"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HGG0916834.1"
                     /translation="MDLSILQEQANTLRFLSADMVQKANSGHPGAPLGMADILTVLSY
                     HLSHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLDDIKNFRQLHSKTPGHP
                     EISTQGVEIATGPLGQGIANAVGFAMAAKKAQNLLGKELINHKVYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNLIIIYDSNEISIEGDVSLAFNEDVKMRFESQGFEVLSIDGHDYE
                     AIDKALKQAKKANKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEKAGFDP
                     NLNFYIPKAAKIRFESAVELGDLEEAKWKDKLEKSEKKELLEKLLNPDFSKINYPDFK
                     GKDLATRDSNGEILNALAKDLEGFLGGSADLAPSNKTELYGMGDFAEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKVKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKDAKFTLLASGSEVSLCLESANALEKQGFACNVISMPCFELFE
                     KQDKAYKDRLLQGEVIGVEAAHSNELYKFCDRVYGIESFGESGKDKDVFEHFGFSVPQ
                     ILNFILDK"
     gene            11464..12579
                     /locus_tag="ACJFEZ_000697"
     CDS             11464..12579
                     /locus_tag="ACJFEZ_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916835.1"
                     /translation="MEANFKFQKEENKVFIFGIWDKTSVSKIKIKDLLSQISQTNCIF
                     DFSQLNEIDMAGVRFFLALEHDLKKNDILILKQGLNTRFKSLFELCEKNYQRINEKQE
                     KKFNFTDFFISLGILSFDLLKILQKFINFTGAFFTSLFLCIKNPKNFRFISFLYHIEN
                     SAFKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLVGISATRELAPLIAAIVI
                     AGRSASSYTAQIGVMKITDEINAMNTMGFRSFEFIIIPRVMALVIAMPLIVALSDAIS
                     ILGGMVVAKINLDISFGEFLRRFREAVEMKHIIIGLAKAPIFGFLIGLIACFRGFEVK
                     NTTQSIGIYTTKSVVNAIFWVIAFDALFSVVLTIMEV"
     gene            12580..13302
                     /locus_tag="ACJFEZ_000698"
     CDS             12580..13302
                     /locus_tag="ACJFEZ_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0916836.1"
                     /translation="MIIKAQNIITRFGNKVVHDGVSFEINKNEIFGILGGSGNGKSVL
                     LKQMLMLEHFDEGEYEILGFKLKNISEEDALALRKKWGVVFQFSALFSFFSVYENIAI
                     PLKEYTNLDSIAIKELVLMKLKMVGLNEAVLKQLPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLILELKQSFDLNIVLVTHDKESMKNLLERFIILEDKKV
                     AFCGNYEELRAQNERLFKRFME"
     gene            13305..14201
                     /locus_tag="ACJFEZ_000699"
     CDS             13305..14201
                     /locus_tag="ACJFEZ_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HGG0916837.1"
                     /translation="MENKANYFFVGLFVFGVFFASIGFMLWLGGYSKEESFEYYEIHT
                     QESVAGLGIKAPVRLLGVEIGNVENISIYDKENLGVNILIKIKKGTPIKEDTFATLQF
                     QGITGLKFVQLQGGSKNSPKLQVKGKEEFPVIQFKEGFFAAIDRQSEHIFSLIKRADD
                     KSKELFSDKNIKNLEILLDNLAQLSTTLNKDSKTLNHNIANTSLKLGEMAENVSLSAK
                     GFNASLKDIQEGALALSSFAKKANVKLDSYDDLRLSLAENLELLKKVLIESNILIQNL
                     QKSPSDLIFKETKPKLGPGEKQ"
     gene            14198..14800
                     /locus_tag="ACJFEZ_000700"
     CDS             14198..14800
                     /locus_tag="ACJFEZ_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HGG0916838.1"
                     /translation="MKKFIYITILAFIFNGCSIPTSTLDKTQSFILKNDELPLQANFI
                     KSDKILKIQNASLPLYLHSRSIIYVQKGISKAYAYHFWADLPNNLYQSLLLSKFEQSQ
                     IFKALLSQGSSVGSDYILESRIDSFEQVVDENENYVSISISINFIDAKESKIIAHRLF
                     SIKERVKKIDIFDVYQSFEKALNSLGNEIVLWINATLDEK"
     gene            14852..15352
                     /locus_tag="ACJFEZ_000701"
     CDS             14852..15352
                     /locus_tag="ACJFEZ_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FLiS export co-chaperone"
                     /protein_id="HGG0916839.1"
                     /translation="MKNELDVFKKHLGEIQGVSEFKATQICSQINDANDFIGALQILD
                     LTLKKIEKSITERLDEQNDDLQKRTLDATSSQLIQNCSFMGTALFGNIFNVYVGQKLF
                     EFEISNPLLVLEKAGYEGVLAYIQDKRDEIKDILCKLSSAITMGISMDNMNFSDSATN
                     FKNLFR"
BASE COUNT         5512 a         2388 c         2554 g         5059 t
ORIGIN      
        1 aagtgttaaa aaatttataa aagagacgat atggagttaa atcttttcaa aatattgcaa
       61 attaaagccc aaaaatgggc tttatcattt ttttatccca taagcatttt ttaaattgtt
      121 taaattagca cttgcatgaa gcaataaaca atcagccaaa accaaacgca ccatagcact
      181 tactactaca ctacctctaa cacctacaca aggatcatgt ctgcctttga gttcaaattc
      241 taaatcattt ccaaatttat ccatactgct ttgctttaaa aaaatagaag gagtaggttt
      301 aaaataagtc tttaaaataa gatcttgtcc atttgaaata cctcctaaaa tccctccgct
      361 gtgattactt aaaaactcac ccccttttaa agcatcatta ttttgcgagc ctcgcatttt
      421 actcgcatta atcccctcgc ctatctcaac agcttttaca gcattaatcc ccattaaggc
      481 atgagctaat ttagaatcta atttatcata aagcacttct ccaagtccta caagcattcc
      541 cttagctcta gtataaacag aagcacccac actatctttt gagcttctag cgcttaaaat
      601 ttcattttta aagtcacttt ctagttttgg atcaaggcaa aaaatttcac ttttcttagc
      661 aaattcaaaa tcaaattctt tttctttcaa atttgataca aaagttccta ccccaaaaac
      721 accactttga acacaaatac caaattcacg caaaagcata gctgcaacag cacccgcagc
      781 cactctagca acactttctc tagcactagc tcttccgcct cctctatgat ctcttatgcc
      841 gtatttatga aaataagtaa aatcagcatg ggcaggacga aataaatctt ttaaattatc
      901 ataatcctta gaatgtgtgt tttcgttaaa cacaaccata gcaataggat gacccgtggt
      961 ataaccttca aataccccgc ttaaaacctg cgccctatcg ccttcttttc ttggagttgc
     1021 aaatttgctc ccacccttgc gtttatcaag ttcgctttgt aaaaactctt catcaaattt
     1081 aacccctgca ggcattccat caatcacgca acccactgcc actccgtggg attctccaaa
     1141 acttgtaaat tttaatcttg taccaaaagt attcactata aagctcctaa tttttcaagt
     1201 gtaatttttg ctgccatttg ctgtgcttct tttttatttc ccgcaatggc tcttgcaagc
     1261 tcttgtccat taaggaataa agcgatttca aattgtttta aatgatcagg tccaaaagca
     1321 cgcacggttt cgtattgtgg ggtttgtcct aattttgctt gtgtaatttc ttgcagtttt
     1381 gttttataat ctttaatgag attttttgca tcaatttgtg ggaagttttt ttctataagc
     1441 tttaaagcga tatttcttgc aaaatcaaat cccgcttcta aatgtatagc ccccataatc
     1501 gcttctaagg catcagaaag tatagaaggc ttttctttac ctccattgtt ttcttcagcc
     1561 gcgctcataa aaataaaatc gcccaaattt aaactatttg cgatctttgc aaaagatttt
     1621 tcattgacca aagccgctct taattttgac aaatccccct cagcgtcttt agcaaattta
     1681 tgaaaaagat attcacccac aactaaatca agcaccgcat cgcctaagaa ttccaaacgc
     1741 tcattattgt aaggtttttt aaaactttta tgagttagag catggattaa aagatcttta
     1801 tctttgaact tataggctaa tttttgttct aataattcaa tatttttcat cattttccct
     1861 tgcaattttt aaagcagctt cgcgtgctaa agtatcacac ctttcatttt ctaaatgccc
     1921 attatgtgct tttatccaat aagcttttat cttatggggt tttgccacat cgatatattc
     1981 tttccataaa tctacatttt ttttaccctt gaaatctttt tttatccaag cttctagcca
     2041 ttcattaata ctttgaacca tcaaattaga gtctgtaaaa agtgaaattt cacaaggttc
     2101 ttttaaggct tttaaagctt cgataatcgc ttttaattcc attctattgt ttgtagtatt
     2161 agcttctgct ccaaaacctt ctttttgatg ttgattatag cgtaagatat aagcccatcc
     2221 tccaaaacct ggatttttaa ggcaagaacc atcagtataa atttcaatat gtctcattat
     2281 ttttcacttc ataaataatt tgacaagtat taaattcata acaaacaggg caatgataaa
     2341 aaaacaaagg cattacgctt ttgcattctg tgcaacgata tgaaaattca agccttgctt
     2401 taaacgaatt ttcttttaaa atttttagca ttttaaaatt agaattttta aaatttacat
     2461 ctttagactc ttcatcctct atcaaaccca aggcataaaa aaattcaaaa tattctttat
     2521 tttgtagatt aaaagcttta ttttctttat aaagcaaatc acaaatactt gaaaaatctt
     2581 gatttaaaaa aatatgatat ttttcaaaaa caaagcgtcc tagcatagga ttattgtctg
     2641 tttgtagttt taaaatatgc tctttttttt cttcatcact taaactagaa gcaagaaaat
     2701 ccaaagcttt taaaaattct ttttcttctt ttacattttc tccaagctca aacaaacaac
     2761 ccaaaagctc taaattttcc ttatattttc ttaatttaag ataaacaatt tttaaaagtt
     2821 ttaaggcttg tatatttctt ggacgcagtt ttaaagcttg caataaaact tcctttgcgc
     2881 gctctaaaaa ccctgcttta aaatatactt ttgccaatgc aaaaaagata aattcacgct
     2941 cttgcttatc cttacttttt tcaagggcga taagataaat ttgcgtggct ttttcaaatt
     3001 caccactttt ggtaaaaatt tcggccaaaa aactcaaatt tccaaaactc aaaccctcat
     3061 ttcttaacaa atctttgtgg atattatcca tctcaaattt cttaataaat ttttcaagct
     3121 tttgttcttc atctttgctc gcaaatactt tccaaatata atttgccaca gctacaacga
     3181 agattaaaac agttaaaatt ataagtccca ctaagggatc tctgtattct acgaagaaaa
     3241 aatccatcat cctgctctaa aaattttatg ccaaattata gctaaatctt tgtataattt
     3301 tatttaaggt tttaaaatga taactaaaga aagtatagaa aatttatccc aaagacttaa
     3361 tattgttgat attattgaaa attatataga agtaaaaaaa caaggttcaa gctttgtttg
     3421 cgtgtgtcct tttcacgcgg ataaaaatcc ttctatgcat ataaatccca caaaaggatt
     3481 ttatcattgt tttgcgtgta aagcaggcgg agatgctttt aaatttgtaa tggattacga
     3541 aaaattaagc tttactgatg cggttgaaaa aattgcaaat ctttgtaatt ttactctaag
     3601 ttacaccaaa gaaaaaaatg aaaataaaaa agaattaaga actatactgc ctagcttaaa
     3661 tgcttatttt aaatccaatc tcaaacacca taaagaagct ttggattatc tgtataaaag
     3721 aacgctaaat gatcaagata tagccaaatt tgaattaggt tttgcaggct caagcgaaga
     3781 cagcataaga ttgtttcata acgaaaaaat ccctttagaa gatgctatga gtgtgggtgc
     3841 tttaaaaaag gatgaaaata atgaatttta tgcaagtttt atatggcgta tcacttttcc
     3901 aatttatgat cataaagact tattggtagg ttttggggga cgcactttaa atcctaatgt
     3961 tgcagcaaaa tatgtgaatt ctcctcaaaa tatattattt gataaaagta gaatttttta
     4021 tgcttttaat atagctaaag aaaatatagc caaaaaaaaa gaaatgatag tatgtgaagg
     4081 ctatatggat gctatagctt ttcataaagc aggttttaac aatgctgtag cagtgcttgg
     4141 aacagcatta actgaaaatc atctgccttt aatccgccgt tatgaagcta aagtgatttt
     4201 atgttttgat aatgatgaag cgggattaaa tgcggccact cgttcagcct ttttacttag
     4261 tactcataaa atagatggta aagtagccct tttagaaggc ggaaaagatc ctgccgaact
     4321 tgttgctaat aatcaaagtg cgaaacttca caccctactt gaaaaaggga tggatttagg
     4381 ggagttttac attagacgca tactttcaag cttttcttta aattccgccc tagataaaca
     4441 aaaagctctt gaaaatatac aaaaatacac ctttagcctt gaacccttag tagctagttc
     4501 ttatgtaggt ttggtttcaa aacttttagg agtagatgaa aaactcatcg ttcttacttc
     4561 aaatcgaaaa ccaagtaaaa ctatcaattt taacacctct ttccaacaaa cgcaaaatca
     4621 taatcctaaa tcccacatca ccgagcttga actcttaaat tatttaaaaa acaatcctaa
     4681 catgcacgag ctttttataa aaattagcga tattagatgt tttaaacata aagtattatt
     4741 agaaaaaatt ttagaacaca aaagctatga agatagtgat ataagagaat ttgagagtaa
     4801 aaattttagt aaagatttaa gtcaaattga gtttttatgg ggaatttgta aggttaattt
     4861 agccttttta aatcatatta atatcacaaa ttcttatctt gctttaaaaa aacaaatttt
     4921 tacccttata gaaaaaaatt ttgtccttct tagtaaaaat ttaaacgatc atgaacttgt
     4981 agaattttta aaagagaatt tgtttttact gaaaaatgaa aaagatgaag agaaactaga
     5041 agctttattt aaaaatttgc atagattttt ttctgctaaa aatttggata ttaaaatttt
     5101 aaaaaataat tctgaaaatg attacaatga agaacccttt taagcttcat ttagaaaaat
     5161 aacgaaaaaa ctatccgatt tacctttttt taaacacaat cacgctaaag tatagaaaaa
     5221 tttattaagg atatattatg atgcctttta gcgatgaaga gcttataaat cctgtaaaag
     5281 caagtttaga taaaagtatg cctatgttag aacgcgatgg aggcggtctt gaatttttag
     5341 ggattaaaaa tggtgtggtt tatgttcatt taattggggc ttgcaaagga tgcgcttcaa
     5401 gtggaacgac attaaaatac ggacttgaaa gacaacttaa aatcgatata catccagaaa
     5461 ttactatagt taatctaaac ggtggagctg aagattttgc aaaactataa aaaacttgga
     5521 atcgagcatt ttttacgcaa agactttaaa acagcaaaaa tatatttttc tttagcttat
     5581 gaaaaacgca aaaacaaacg cttgtttcat tttatcactc tttgtgatct agctttaaaa
     5641 tctccaaaag aagcgttatt actttttgaa ttttatttag aacattatca aattaaaaat
     5701 atcgataaag atttagaaga aattttaagc actatagagc ttaaaaatga aaaaaatacc
     5761 gatgaaacag aaaatgaaat tcaagaagct catactttaa actacaaaga ttttctaaaa
     5821 agtgaagagc aaatcggctt taaaaagagt tttgaaaata ttatacatag cacaaaatta
     5881 gtcattgata accgtgatga ttttttagat tttttagaaa aattacttga taatggctat
     5941 aaagatatga ctttaaacta tatagaaagc gttatgccgc acttttgggc aaacgaacgc
     6001 tttataaaac tccaagaaaa acttatagga tttaaaagtg aaattaaagc ttgatcagtc
     6061 ttttattacc gacaatacct tagaatgcga aaaagattgc tattttttaa aaactgcaca
     6121 aaatatgaat tttgctagtg atgccttaga aaaaggtgca aaaatcattg atgtagaaga
     6181 atgcaaaaaa cttttaaaaa tcgatgaaaa tatcaaaatc ataggaatta caggaaccaa
     6241 tggcaaaacc accaccgcag cggctattta ttcgatttta cttgacttag gttttaaatg
     6301 tggactttgt ggcactcgtg gagcttttat caacgatgag caaattgatg aaaagtcttt
     6361 aaccacttcg cctattttaa aaactttaga atacttacaa cttgccacac aaaaaaaatg
     6421 tgattttttt attatggaag ttagctcgca tgctttggtg caaaatcgca tcgaaggctt
     6481 gaaatttgca gccaaaattt ttactaacat tactcaagat catttggatt ttcatggcaa
     6541 ttttgaaaac tataaagcag caaaagagct cttttttacc gatgagagtt taaaatttat
     6601 caacaaagat actttaatga ttaaatttaa tgtgcgcaat gcttttactt atggcataga
     6661 aaatccttct ttgtatcaag ttaaagctta ttctttagaa gatggtatca gtgctattgt
     6721 agtattaaaa gatcaaagtt ttcatattga ctcgccccta ctaggacttt tcaatcttta
     6781 taatcttcta gccgctagtg cttgtgttaa tgaacttgta aagccgaatt taaaagactt
     6841 agaaaaagct atcagtggct ttggcggggt ttgtggtagg gttgagcaag tggctaatgg
     6901 cgtaatcgtg gattttgctc acactcctga tggcattgaa aaagtacttg atacactcaa
     6961 aaataaaaaa ctcatagtag tttttggagc aggtggagat agagataaaa ccaaacgacc
     7021 tttaatggga aaaatcgttg agcattttgc aaaaatagcc attatcacaa gtgataaccc
     7081 gcgtagcgaa gaacctaaag atatcatgaa tgaaattcta tcaggctttc aaaaccctga
     7141 taaagctttg atgatagaag atagaaaaga agctataaat aaagctttaa aacttaaaga
     7201 aaaagacgat ttagtagtta ttttaggcaa gggtgatgaa aatacccaag aaatcaaagg
     7261 gataaaacac ccctttagcg acaaagcggt tgtgaatgaa attttaaaaa atcaaggata
     7321 ataaatgttt gaaaatatgg atttttctaa gatgggagaa cttttaaatc aagttcaaga
     7381 aaaagcaaaa aatatagaat tagagttagc caatcgagaa tttagtgcta aaagtggggc
     7441 aggacttgtg aaagtcagtg ctaatggcaa gggtgagatt atcgatgtta gcattgatgg
     7501 ttctttactt gaagataaag aatctttaca aattttactc atttctgcta taaatgatgt
     7561 tttagctatg gtagcacaaa atcgatcaag cttggccagt gatgttttag gaggatttgg
     7621 gaaattatga aatttttgtt ttttttagta acctttttaa tatccctaag tgcaatcgag
     7681 cgtcctaaat ttgaagattt tgctgcaggc tacgaaagaa ataaagccag tatgcttaat
     7741 tatgaaggaa tgcctgcttt tgccttgagt gaaaatttac ttgcggtttt aaaacaacct
     7801 aatgtcaaac tcaataaata tgtaaaatat gatccatttt taaatcttta tcttgtaaga
     7861 actgatttta gcttaatccc tacacctatg ggagatgaag aaaaacttac acgcaatgat
     7921 tggataggaa tttgggatcc taatagagct tatataggtc acattaaata tcttgcgcaa
     7981 aatattgatg aaaaagatca gcttgatttt tctaccaaag tggggctttt aggcactcct
     8041 tgctgcgaaa tgatgggaat tgctcttaat aatagctcct ttataggaaa tcgttactta
     8101 aagcatttta tgaaatataa cgatgtatat tggggcgata taggggttga ttttgcggtg
     8161 cgtgaaaata aaatttatgt gaataatgtt cgaaaaagtg ggcaatttct aatcaacgat
     8221 gaaatcataa gcgtagatgg aacactagtt aaagatataa gaaagctaaa tgaaaaaatt
     8281 ctctttgcag atcgtggaag cacactttat tttcaagtat tgcgagataa tgtggattta
     8341 aatatttcta ctgaagtttt tgccaaagat ttaagcaaat ttaatctccc aagcaataaa
     8401 ccaaaaccaa aaccaaccaa ttttagaagc aatataggtc taagtgtaaa ttcaagtctt
     8461 atagttacaa aagtagacgc aggctctaaa gctgctttag caggatttat ggtaggggat
     8521 aaaattttgc gcgcaaacaa tgtgacacta aaagatttta aagaacttca aaccctactt
     8581 ggtacaggaa atgattttaa tattttaatc gaacgcaaaa gtgataaact tcctttattg
     8641 ggattaaaca atgatttagg aggagttcat tcaggtggag atggaaaatt tcaatttttc
     8701 ataaggcttg taaagtgaaa gaactcttta tcaaacattt agaaaatcat ctaccaaaag
     8761 ttcaaagctt ccatcctttt tttaatgaag ctttggcaaa gatgctaaaa gcaggtggaa
     8821 aacactttcg tgctcaatta ctcttaggag ttgttcaaaa taaagcacct catcttatcc
     8881 ccaatgctct aaacgcggct ttggccttag aatttatcca tacttactcg ctcatacacg
     8941 atgatttacc tgctatggat aatgcagatt taagacgcgg aacgcctact ttgcataaaa
     9001 gctatgatga aactacagct attttagtag gcgatgcttt aaataccgaa gcttttttac
     9061 ttctatctaa tttaaattta aaagaaagca ttaaaattaa tctgattaga actctagctt
     9121 ttaatgcagg aatcaatggt atgattttgg gtcaggctat tgattgttat tttgaagata
     9181 aaaaattaaa tttagaagaa cttgagtttt tacacacaca taaaaccgca aaacttatag
     9241 cagcggcttt aaaaatgggc tgcgaaattt gcgaactcga tgaaaaagaa agcgaaaaaa
     9301 tttatcaaat aggtctaaaa cttggactta tttttcaaat caatgatgat atcatcgatg
     9361 aaacaatgag cgaagaagaa agtggaaagc caagcaaaca tgatgagcat aaaaattctt
     9421 ttgtgaattt attaggactt gaaaaggcta ttcaaagtaa ggaaaatttg attaatgagt
     9481 gtaaaaatga tcttggtgat cttgatgcta atttagcaca catgattaaa agtttaatga
     9541 ttaaatattt ataaaggtta caaatggatc tatcgatatt acaagaacaa gcaaatactt
     9601 taagattttt aagtgccgat atggtgcaaa aggctaattc aggccaccca ggtgcaccct
     9661 tgggaatggc tgatatttta acggttttaa gttatcatct ttctcataat cctaaaaacc
     9721 caacttggct aaaccgcgat aggcttgtgt tttcaggcgg acatgccagt gctttgcttt
     9781 atagcttttt gcatttaagt ggttatgatt taagtttaga tgatattaaa aatttccgcc
     9841 aacttcattc aaaaactcca ggccatcctg aaatttcaac tcaaggagta gagattgcta
     9901 caggcccatt aggacaaggt atagctaatg ctgtaggctt tgctatggca gctaaaaaag
     9961 ctcaaaactt actaggaaaa gaattaatca atcacaaggt ttattgtctt tgtggagatg
    10021 gggatttaca agaaggaatt tcttatgaag cgtgttcttt agcaggactt cataaacttg
    10081 ataatttaat catcatctat gatagcaatg aaatttctat cgaaggagat gtaagcttag
    10141 cctttaatga agatgtaaaa atgcgttttg agtcacaagg ctttgaagtt ttaagtatcg
    10201 atggacacga ttatgaagca attgataagg ctctaaaaca agctaaaaaa gccaacaaac
    10261 cttgccttat catcgcaaaa acaaccatag caaaaggcgc aggagagctt gaaggaagtc
    10321 acaaaagcca cggcgcacct ttgggtgaag aggttattaa aaaagccaaa gaaaaagcag
    10381 gatttgatcc aaatttaaat ttttatatac ctaaagcagc aaaaattcgc ttcgaaagtg
    10441 ctgtagaact tggagattta gaagaagcta aatggaaaga taagctcgaa aaatcagaaa
    10501 aaaaagaact cttagaaaaa cttttaaatc ctgattttag caagataaat tatcctgatt
    10561 ttaaaggcaa ggatttagct acaagagata gtaatggaga aattttaaat gctctagcta
    10621 aagatttgga aggattttta ggcggaagtg cggacttagc cccatctaat aaaaccgaac
    10681 tttatggaat gggtgatttt gcggaaggaa aaaatattca ttttggtatc agagaacacg
    10741 ctatggctgc gatcaataat gcctttgcaa gatatggaat tttcttacct ttttcagcaa
    10801 cattttttat ctttagcgaa tatttaaaac ccgcagctag gatagcagct ttaatgaaag
    10861 tcaaacattt tttcattttc acacatgata gcataggcgt tggcgaagat ggaccaactc
    10921 atcaacctat cgaacaactc agcactttta gagctatgcc aaatttctta acctttagac
    10981 cagctgatgg agtggaaaat gttaaagctt ggcaaatagc tttaaatgca gatattccaa
    11041 gtgcttttgt actttcacgc caaaagctta aggctttaaa tgaacctgtt tttggtgatg
    11101 taaaaaacgg ggcgtattta cttaaagaaa gtaaagatgc taaatttacg cttttagcaa
    11161 gcggaagtga ggtttctctt tgcttagaaa gtgcaaatgc attagaaaaa caaggctttg
    11221 cttgtaatgt aatctccatg ccttgttttg aactctttga aaagcaagat aaagcttata
    11281 aagataggct tttacagggt gaagttatag gggttgaagc agcacattct aatgagcttt
    11341 ataaattctg cgatagggtt tatggcatag aaagttttgg agaaagtggt aaagataaag
    11401 atgtatttga gcattttggt tttagcgttc cacaaatttt aaatttcatt ctcgataagt
    11461 aaaatggagg caaatttcaa atttcaaaaa gaagaaaata aagtttttat ttttggaatt
    11521 tgggataaaa cgagtgtgtc taagattaaa atcaaagatc tattgagcca aatttctcaa
    11581 acaaattgta tttttgattt tagtcaatta aatgaaatcg atatggctgg agtgagattt
    11641 tttcttgctc tagagcatga tttgaaaaaa aacgatatct tgattttaaa acaaggatta
    11701 aacacacgct ttaaaagcct ttttgagctt tgtgaaaaaa actatcaaag aattaatgaa
    11761 aaacaagaga aaaaattcaa ttttacagac ttttttattt ctttaggaat tttaagtttt
    11821 gatcttttaa agattttgca aaaatttatt aactttacgg gtgctttttt taccagtctt
    11881 tttttatgta taaaaaatcc taaaaatttc cgctttatat cttttttata tcatattgaa
    11941 aattcagctt ttaaagcctt gcctattgtt attttaaccg ctcttttagt cggggttgtg
    12001 cttgcatatc aagctgctta tcagcttgca caatttggag ctaatatttt catagtagat
    12061 ttagtaggaa tttcagccac tagagaactt gctcctttaa tcgccgcgat agtcatagca
    12121 ggtagaagtg caagctctta tacggcacaa attggggtca tgaaaatcac agatgagatc
    12181 aatgctatga ataccatggg ctttcgctct tttgaattca tcatcattcc gcgggtcatg
    12241 gctttagtta ttgccatgcc tttaatcgtt gctctaagtg atgcgatcag tatattagga
    12301 ggaatggtag tagcaaaaat aaatcttgat atatcctttg gagaattttt aaggcgcttt
    12361 agggaagctg tggaaatgaa acatatcatt atagggcttg caaaagctcc tatttttggt
    12421 tttttaatag gacttattgc ttgttttcgg ggatttgagg ttaaaaatac cactcaaagt
    12481 ataggaattt atactacaaa aagtgttgta aatgctatat tttgggtaat agcatttgat
    12541 gctttatttt ctgtggtttt aactataatg gaagtttaaa tgattataaa agcgcaaaat
    12601 attatcaccc gatttggaaa taaagttgtc catgatggag tcagttttga aattaacaaa
    12661 aacgaaattt ttgggatttt aggaggaagt ggaaatggca agtctgtact cttaaaacaa
    12721 atgctaatgc ttgaacattt tgatgaggga gaatacgaaa ttttaggctt taagctaaaa
    12781 aacattagcg aggaagatgc tttagcgctg cgtaaaaaat ggggtgtagt atttcagttt
    12841 tctgcactct ttagcttttt tagcgtttat gaaaatatag ctatccctct taaagaatat
    12901 acgaatttag attccattgc tataaaagaa ctggtattga tgaaactcaa aatggtcggt
    12961 ttaaatgaag ctgttttaaa acagcttcca agcgagctaa gtggcggaat gcaaaaaaga
    13021 gttgctattg ctagggcttt ggctcttgat agtaaattac tttttttaga cgagcctact
    13081 tctggacttg atccgcatag tagtcgtgaa tttgatgatt tgatactaga acttaaacaa
    13141 agctttgatc ttaatattgt tttagtaaca cacgataaag aaagtatgaa aaatctgctc
    13201 gagcgtttta tcatcttaga agataaaaaa gttgcctttt gtggaaatta tgaggagcta
    13261 agggcgcaaa atgaaagatt gtttaaaaga tttatggagt aaaagtggaa aataaagcaa
    13321 attatttttt tgtagggctt tttgtttttg gagttttttt tgctagtatt ggtttcatgc
    13381 tttggcttgg aggatactca aaagaagaaa gttttgaata ctatgaaatt catacacaag
    13441 aatctgttgc aggccttgga atcaaagctc ctgtaaggct tttaggagta gagataggaa
    13501 atgtggaaaa tatcagtatt tatgataaag aaaatttagg ggtaaatatt ttaattaaaa
    13561 tcaaaaaagg aacccctata aaagaagata cttttgcaac tttgcaattt caaggcatta
    13621 caggacttaa atttgtacaa cttcaaggag gttctaaaaa cagtccaaaa cttcaagtaa
    13681 aaggtaaaga agaatttccc gtgattcaat ttaaagaagg tttttttgct gctatagata
    13741 gacaaagcga gcacatcttt tctttgataa aaagagcaga tgataaatca aaagagcttt
    13801 ttagtgataa aaatataaaa aatttagaaa tacttttaga taatttagca caactaagca
    13861 ccactttaaa taaagattct aaaacattaa atcacaatat cgcaaacact agcttaaaac
    13921 ttggagaaat ggcagagaat gtaagcttaa gtgcaaaagg ttttaatgca agtttaaagg
    13981 atatccaaga aggagcttta gcgcttagct cttttgcaaa aaaagccaat gttaaacttg
    14041 attcttacga tgacttacga ctttccttag cagaaaattt agaacttttg aaaaaagtgc
    14101 ttatagaaag caatatcttg atacaaaatc tacaaaaaag tccatcggat ttaattttta
    14161 aagaaactaa acccaaacta ggaccaggag aaaaacaatg aaaaaattca tatacattac
    14221 tatcttagcc tttatattta atggatgttc aattccaact agcactcttg ataaaacgca
    14281 aagctttata cttaaaaatg atgaacttcc tcttcaagcc aattttatta aaagcgataa
    14341 aattcttaaa attcaaaatg cgtccttgcc tttatatctt cattcaagat caattattta
    14401 tgtgcaaaaa ggtataagca aggcttatgc gtatcatttt tgggcagatt tacccaataa
    14461 tctttatcaa tccttactgc tatccaaatt tgaacaaagt caaatcttta aagccctgct
    14521 ttcccaagga agctctgtgg gaagtgatta tatacttgaa agcaggatag attcttttga
    14581 acaagtggtt gatgaaaatg aaaattatgt aagcatttct attagtataa atttcatcga
    14641 cgcaaaagaa agtaaaatca tcgctcatcg cctgttttca atcaaagaaa gggttaaaaa
    14701 aatagatatt tttgatgtct atcaatcctt tgaaaaagct ttaaattctc taggaaatga
    14761 aatagtttta tggatcaatg ccacacttga tgaaaaatag gaacactttt tgctttttaa
    14821 acctttagca atattttttg aaaggtgtaa aatgaaaaat gaattggatg tttttaaaaa
    14881 gcacttgggt gaaatacaag gcgtaagtga gtttaaagct acacaaattt gctcacaaat
    14941 aaatgatgca aatgatttta tcggtgctct gcaaatactt gatttaacgc ttaaaaaaat
    15001 tgaaaaaagt atcacagaaa gacttgatga acaaaacgat gatttacaaa aaagaacctt
    15061 agatgcaaca agttctcaac ttatccaaaa ctgctctttt atgggtacag cactttttgg
    15121 aaatattttt aatgtatatg taggtcaaaa actttttgaa tttgaaattt caaatcctct
    15181 tttagtttta gaaaaagcag ggtatgaagg agttttagct tatattcaag ataaaaggga
    15241 tgaaattaaa gatattttat gcaaattatc aagtgctatt accatgggaa taagcatgga
    15301 taatatgaat ttttctgact ctgcaacaaa ctttaaaaat cttttcagat aagagttaaa
    15361 actcttatcg ctttaaacat actcattaaa attaatctta agaggttttc atattttagc
    15421 ttaaagagat attccgctct ttttcaagct aggttgaaaa aaagggggag ggaagcaacc
    15481 tagcctgtga gatctttgaa gatctcttta aac
//
LOCUS       DBBXRO010000030        15336 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.030, whole genome shotgun sequence.
ACCESSION   DBBXRO010000030 DBBXRO010000000
VERSION     DBBXRO010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15336
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.030"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(1..1836)
                     /gene="mnmC"
                     /locus_tag="ACJFEZ_000702"
     CDS             complement(1..1836)
                     /gene="mnmC"
                     /locus_tag="ACJFEZ_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004808 - tRNA
                     (5-methylaminomethyl-2-thiouridylate)(34)-
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HGG0916840.1"
                     /translation="MKKANLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYSEAFEFEE
                     NDTFIIAESGFGIGLNFFLTLKRFLQAKKRPKKLFYTSIEGFYIEKDKLREIYQKLGF
                     YEEFKEILEAFLKFYPKAKKGYYRFYFKDCFLDLIFDDIAILRELDFNADVWFLDGFS
                     PSKNSAMFDENFIAQVARLSKTNTQICTFSASSALQKNLIKYGFEIQKTKGFRKREMI
                     KAFLRKEYPTLDKEAYFQRIPSLYKNKKVAIIGSGICGATLAYELSLRDFEVSVFEKN
                     DSLGCGASGNESGILSSLILKPDVALGEFSQLAFIEASRFYKQILDLNLKGVIEFAHT
                     PLMQERFISQKDNILFKIDKNEAFLEDGGHIKPKEILKSLFEKSQAKMYFNHEYDFFQ
                     YQEDKFILHFKNQKAMQDFDILIYAMGADTKDFLVYDGMLLSKVRGQVTHLKPFLDNA
                     FALSSKAYICPSDGDLQVIGASYDRLNSNPNPQKADDEENLQNIQEFLKGDEEIIIKG
                     SRVGFRSYSSDRFAIVGAAYDEAFYKQEYKALLWTKNKAQVLPQNIPNLYLNLAHGSR
                     AFSTSVLAARYLCALINEEPLGVFKNFIPCIHPARFLIRKLKKGI"
     gene            complement(1833..3803)
                     /locus_tag="ACJFEZ_000703"
     CDS             complement(1833..3803)
                     /locus_tag="ACJFEZ_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HGG0916841.1"
                     /translation="MFRILVFCIALFSICFGAYENELANFDKNFIASKNDAQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNALNLDDKSYANELEESGVSKASINALRKA
                     VIKDKQKVQPDSKNVEVSSFEPPKSTSKPPQTKQESTKTQNNKPQQTKKVDKVYVLKS
                     SKTSQGVVLDLNTNLEQKDIKSFALDEKGNYRYISDFEGILEGGRKEYKFDDYRIVIS
                     QYNPKMIRIVAYAKEKIPLNFDFEDEKISISKKSQAIQKSTPSKQESKTAAKQESEKV
                     VAKQESKPVKTQEAKTNTKKEQENDEPLYVLDVDKSSNSVVLNLSDELDEKDITSFST
                     KDQKFFRQVVSFQGILEGSRKNFTFGQNAVTVTQYNPKTVRIVLSSTKEFKLFKDLDD
                     KSLTLGFSGSTSKSTSTSSKSTSKTASKNVLNSNFKSDKLIVLDAGHGGKDSGALSDK
                     KGSLKEKDIVLSTTLKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLFLSI
                     HANAAPSASKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILNFLN
                     REKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGYITH
                     PSEGKRIANKSFQDTLVKGIADGVENYFYNNR"
     gene            complement(3803..4894)
                     /locus_tag="ACJFEZ_000704"
     CDS             complement(3803..4894)
                     /locus_tag="ACJFEZ_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HGG0916842.1"
                     /translation="MSLKSLQIGKHTIKYPIFQGGMGLGISWDKLASAVSLNGGLGII
                     SSVGTGYYENRTHISKELNAKPYGSENFYSREGLQTLINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNIIVSGAGLPTNLPEFTADFPDVALVPIISSPKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLENLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASDEFKNVLLACKKEDIELIKSPVGY
                     PARGVRTNLLDLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLEKLISVKELMDKLVNGE"
     gene            complement(4891..6096)
                     /gene="tyrS"
                     /locus_tag="ACJFEZ_000705"
     CDS             complement(4891..6096)
                     /gene="tyrS"
                     /locus_tag="ACJFEZ_000705"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HGG0916843.1"
                     /translation="MDIKNILAEIKRGCAEIIDEERIENLIKNYYEKGENFFVKAGFD
                     PTAPDLHLGHSVVLTKMAYLQKHGAIVQFLIGDFTGQIGDPSGKSVTRKKLDKEQVLQ
                     NAKTYEEQVFKILDPQKTQLKFNSQWLNELGATGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKCDIEMGGTDQKFNLLMGRTLQRIYNIGKEQAVMM
                     MPLLEGLDGVNKMSKSLGNYIGVTEKANDMYAKILSISDELMWRYYELLSTKSLEEIE
                     NMKKEISSGNLHPKLAKENLALEITTRFHNEESAKAAKAEFDSVHSGNALPSDIKEFE
                     IEGEIWLAKALVECGLENSTSAARRSINANAVSVNSQKVSDEQMQLGTGEYILQVGKR
                     KFAKLKVNI"
     gene            complement(6112..8307)
                     /locus_tag="ACJFEZ_000706"
     CDS             complement(6112..8307)
                     /locus_tag="ACJFEZ_000706"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HGG0916844.1"
                     /translation="MKPVDEELLLEKLIEDIKNCRDLTRAKELLFSICQEDAIVEKAV
                     DYCIKSHEGQVRKSGEPYAVHPILVASLVAFLSENKATILAALLHDVIEDTQCTEEEL
                     RDQFGSEVLKLVLGLTKIVEIREDNLIPSKSKKSLTKSALTFRNMLLASIEDVGVLVV
                     KLCDRLHNMLTLDALREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNDQQMQLGLNEFISKIELLFLSNGFRQGSFQIQKRIKHSYSIYLKMQ
                     RKGVGIEEVLDLLGVRILVENVSDCYLALGVLHTNFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDTKNIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSTNN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRVKVPLLTELKNGDIVRVVTSNDRFYRCSWVDSVKTGKAKASIREFCKQKMR
                     EINLLSAINMLSFIFSVDKNKIENWIERENLGRRIRQVASDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFLLYSNHKIANVDFDYCCHPKRGDAVLAFIENGNAIVHHKLC
                     DRADKMIDNNKDMVLIKWDSNIPKSYKLIFSLENKKGILAEFLAVLAKMQINLLTISL
                     SSDINTVVDYFEITIEIPDNINPDNVRDRLKSYCKILDFTSLNDAYKEA"
     gene            complement(8291..8515)
                     /locus_tag="ACJFEZ_000707"
     CDS             complement(8291..8515)
                     /locus_tag="ACJFEZ_000707"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HGG0916845.1"
                     /translation="MENRIEEIAAKALERMGDDRYRLSLVVAKRAEQLADGAAPLVDI
                     DKSKLKFADIALYEIAENKITLEGLVETSR"
     gene            complement(8529..9245)
                     /gene="pyrH"
                     /locus_tag="ACJFEZ_000708"
     CDS             complement(8529..9245)
                     /gene="pyrH"
                     /locus_tag="ACJFEZ_000708"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HGG0916846.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIANEIKELVKNNI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESCGLDVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVIFAAGTGNPYFTTDTTAILRAVEIDAQMVIKA
                     TKVNGVYDKDPNKFDDAVFLQTLSYDEAMQDNIKVMDDTAIALAKDNSLPIVVCNMFE
                     EGNLLKIIQGDNSLCSIVKN"
     gene            complement(9297..10499)
                     /locus_tag="ACJFEZ_000709"
     CDS             complement(9297..10499)
                     /locus_tag="ACJFEZ_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HGG0916847.1"
                     /translation="MRKILIFLCFFLLSNEMHANAISEKTKNLEENKRIQEQVNKKLE
                     DLANDILSGEKSLKELSAQIETLNSQTLKLEARAKAQNKDLNLLTSQNTDLLKNKANM
                     EGKLIALMAKDFAYDLPIPQGYVESKESFMAFEVLGGLDKILQDEIFKLSKDYEDISK
                     LIDDKQEQIKKINEDLKDYNTQLAKLQNLRQKQVSEIKKQKTDRAIYAKKLENLQDQQ
                     DELRKTLNQLKIIESKQEDKKQSQKTASDSKIVNNTQKIRQIGSSYQGSSTKRYTGKK
                     TIAPLESFTVKQKFGNYIDPVYNIKIFNENVVLRSNKADAVVKSVLDGKIVFAKDTSM
                     LARVVIVEHDNGIHTIYAHLDKIAPNIKVGKNVKKGAVVGRIKNDLTFEVTQKNFHIN
                     PLELISLN"
     gene            complement(10496..11302)
                     /locus_tag="ACJFEZ_000710"
     CDS             complement(10496..11302)
                     /locus_tag="ACJFEZ_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0916848.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILLTNATLRHYEELVNKDYNI
                     IVASSAELDKNVIKTKLSSFSSLEPLDPKDLIDRLKNDISDKNLKVLRDSLPKFYSIK
                     LDYLPTQNELNTIKNQLLSIPSISKVETFAKTHDKVYSLLVLMKFVFWLFLFIIILLS
                     FVLFLKQMRIWLFEHTERVEIMCLFGAPFWFRSFMLYKIVVLDCFIAFIILFVFFTQI
                     YNLSIVQDSLKAVDIILPPINFIVHLGVIFLVTLFICLFCVNSVMFRVKK"
     gene            complement(11289..11954)
                     /locus_tag="ACJFEZ_000711"
     CDS             complement(11289..11954)
                     /locus_tag="ACJFEZ_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HGG0916849.1"
                     /translation="MSNLIQAHKLSLGYDELVIKEASFTFKDDDFVFITGKSGSGKST
                     LLKSFYGDLELLSGQLEVCGSFMRKIGNSELLKLRQQIGIIFQDYRLIQEYSVEKNVM
                     LPLMIKGYSKKVCHDQASKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVVVVTHRIPSNLRLNYRRFNIENGNMN
                     EIF"
     gene            complement(12003..13199)
                     /gene="trmB"
                     /locus_tag="ACJFEZ_000712"
     CDS             complement(12003..13199)
                     /gene="trmB"
                     /locus_tag="ACJFEZ_000712"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HGG0916850.1"
                     /translation="MPNFKTRKLKEIILPFEKDGVEFVWMAYNDNVNLIYTRVEEESF
                     FLQIKKGENEFVVKVDKHTKPSKIAYLHKALYIFKQYFCEDVISEAFGIKNNALAEKT
                     PLIANDFEEVLERLEGKIYIEIGFGSGRHLLYQAKNNPQILILGIEIYNPAITQVAKL
                     ARAQGIDNILLVQSDARLLLSVLRSDSIEKIFLHFPVPWDKKPHRRVVSKAFCKECAR
                     VLTTQGVFELRTDSYEYFDFTFKEFLEFSSPQFSIRKNENLEISSKYEDRWKRQEKDI
                     YDLWVWNLDKEEKNVLSEEFDFSDIHLSKNDLMLLEKNFENFTLKKEDFFLHFENIYK
                     QGESLLLKIAFGAFNKPEHCYLHIGEAISFVFKEPFKIQENLKAIKELKKSVKFHFNM
                     KHFLEN"
     gene            complement(13199..14431)
                     /locus_tag="ACJFEZ_000713"
     CDS             complement(13199..14431)
                     /locus_tag="ACJFEZ_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HGG0916851.1"
                     /translation="MKKFHLSLCLGALTLLFSACSVSQLSNIGSNKELLVNESLPKIN
                     NLKSLSDISNIAFEWDPLYDDNIKGFYLYRSNDANPEFKLVGTIKNKFQTHYVDAKLE
                     PNTKYYYMMRSFNDQGHISEDGKVIEVKTMPRLEAIPFAQAITNLPSRIKLIWRPHPD
                     PRVASYIIERAKADGQEFKKIAEVKNRLNAEFIDEDLKPEESFNYRIIAVGFDGVQSQ
                     PSSILNSTSKALPPQVEHLNASLDGANKVVLTWDAPKYKDFSYYKVYSTSSSFLPYTL
                     LAKTEQNSYEDIVEGAAKSKYYKVTMVDIDELESPMPKDGVEGKTLGIPSSPSIILAQ
                     STSDGIDLEWVDNDSRAVEYEVRRYGGDQNAIFKGVKEKRLKDIKALPGVEYSYEVIA
                     IDSVGLRSEPSKKVKAKQ"
     gene            complement(14379..>15336)
                     /locus_tag="ACJFEZ_000714"
     CDS             complement(14379..>15336)
                     /locus_tag="ACJFEZ_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HGG0916852.1"
                     /translation="FLVDEPSRLDIFLAKNLQQSRNQIASMIEKNCVWVNDKIQNKNS
                     FKLKVGDKLVLNLPLVEEAKPKFDIDFDIEILYEDEDLLVLNKPSNLVVHGAKSVKSA
                     TLVDWLIEKQYTLSTLGGEVRAGLVHRLDKETSGAILIAKNNFTHQKLSEQLSDKTMG
                     RIYLALIDLPLKEDKIIIDKALIRSSANAIKKIVTNSFVKGSKEAKSAFVNLAKSEEV
                     SLIGAKLFTGRTHQIRAHLASINRHILGDELYGYRGKYECRIMLHAYFLYFIHPRNGE
                     KIFIQAPLMDDFKQILEKKFILGELNEKISLESLLGCFDSFI"
BASE COUNT         4867 a         2982 c         1996 g         5491 t
ORIGIN      
        1 ttatatccct ttctttagct tgcggatcaa aaatcttgca ggatgtatac aaggaataaa
       61 atttttaaac acccccaaag gctcctcgtt aatcaaagca caaagatatc ttgcagccaa
      121 aacagaagtg ctaaaagctc ttgagccatg agcaagatta agatataaat tagggatatt
      181 ttgaggcaga acttgcgcct tgttttttgt ccataataaa gctttatatt cttgcttata
      241 aaaagcttca tcataagctg ctcccacaat agcaaaccta tcgctagaat aagatctaaa
      301 acctactcta gagcctttga tgatgatttc ctcatcgcct tttaaaaact cttgtatgtt
      361 ttgcaaattt tcttcatcat cggctttttg tggatttgga tttgaattca gcctatcata
      421 acttgcgcca ataacttgca aatccccatc gctaggacaa atataagctt ttgaagaaag
      481 ggcaaatgca ttatccaaaa aaggttttag atgagtaacc tgtcctctaa ccttacttaa
      541 aagcattcca tcataaacta aaaaatcctt agtatcagca cccatagcat agattaaaat
      601 atcaaaatct tgcattgctt tttggttttt aaaatgcaaa ataaatttgt cttcttggta
      661 ttgaaaaaaa tcatattcgt gattaaaata catttttgct tgactttttt caaaaagaga
      721 ttttaaaatt tctttaggct taatgtgtcc gccatcttct aaaaaagctt cattcttatc
      781 aatcttaaat aaaatattat ctttttggct tataaaacgc tcttgcatca aaggagtatg
      841 agcaaattct atcactcctt ttagatttaa atctaaaatt tgcttataaa aacgactcgc
      901 ctcgataaaa gcaagttgag aaaattcacc caaagcaaca tcaggcttta aaatcaaaga
      961 gcttaaaatt ccactttcat tgccacttgc gccacatcct aaactatcgt ttttttcaaa
     1021 aacactgact tcaaaatcac gcaaagaaag ctcataagct aaagttgcac cacatatgcc
     1081 cgaacctatg atggctactt ttttattttt atataaactt ggaattcttt gaaaataagc
     1141 ttctttatct agggttggat attctttgcg taaaaaagct ttgatcatct ctcgctttct
     1201 aaaacctttg gttttttgga tttcaaagcc atattttata agattttttt gcaaagcact
     1261 cgaagcagaa aaggtgcaaa tttgggtatt agtctttgaa agtcgagcaa cttgagctat
     1321 gaaattttca tcaaacatgg ctgaattttt actcggagaa aaaccatcta aaaaccaaac
     1381 atcagcatta aaatcaagct ctctaagaat agcaatatca tcaaagatta aatccaaaaa
     1441 acaatcttta aaataaaaac gataataccc ttttttagcc ttaggataaa actttaaaaa
     1501 agcttctaaa atttctttaa attcttcata aaatccaagc ttttgataaa tttctctaag
     1561 cttgtctttt tcaatataaa aaccctcaat gctggtgtaa aataattttt taggacgctt
     1621 ctttgcttga agaaatcttt taagggttaa aaagaaatta agccctatac caaagccact
     1681 ttcagcaatg ataaatgtat cattttcttc aaattcaaaa gcctcactat aaacaaattt
     1741 gctctcattt aaaccatctt ttgagttaaa ataaaaatca tcaaaatcca aagaaaatgg
     1801 ggtattgtct ttaaagatta aattagcttt tttcatctat tgttataaaa ataattctcc
     1861 acaccatcag ctataccctt aaccaaagtg tcttgaaaac ttttatttgc gattcttttt
     1921 ccctcacttg gatgagtgat atatccaatt tctatcaaaa tagcaggcat ttgagctcca
     1981 acaagaaccc aaaaaggagc ttctcttact ccaccatcga caattttata cttcttacga
     2041 gtttgggtta agatattttt ttgcacatct atagcaagtt tgtttgaagc cacgatcttt
     2101 tctctgttta aaaaattcaa aatactttgc tttgaaaaat aattaatctc ttcaaaatca
     2161 ccctgatttt ctttttcagc agctttttta cttctttcac ttctagcagg acttaagaaa
     2221 aaagtctcca caccctcact gctttttgct tttgatgcac taggcgctgc atttgcatgg
     2281 atagataaaa acaaatccgc tcttttatca ttggcatatt ttgttctatc tctaagattg
     2341 ataaatttat ctgaacttct tgtataaagt actttataac cgcgtttttt aagctcattt
     2401 ccaagcttta aggtcgtgct taaaactata tctttttctt ttaaactccc ttttttatcg
     2461 cttaaagcac cactatcctt acccccatgt cctgcatcta agactatgag tttatcagat
     2521 ttaaaattag aatttaaaac atttttacta gcagtttttg aagtgctttt gcttgaagta
     2581 gaagtgcttt tgcttgtact gccactaaaa cctaaagtca aacttttatc atctaaatct
     2641 ttaaaaagct taaattcttt agttgagctg agtacaatac gaactgtttt tggattatac
     2701 tgagtaactg taacagcatt ttgcccaaaa gtaaaattct tgcgactacc ttctaaaatt
     2761 ccttgaaagc tcactacttg tctaaagaat ttttgatctt ttgtgctaaa acttgtaata
     2821 tctttttcat caagctcatc gcttaaattt aaaacaacag aattagaact tttatctaca
     2881 tctaaaacat ataaaggttc atcattttct tgttcttttt tggtatttgt tttagcttct
     2941 tgagttttaa ctggtttgga ctcttgtttt gcgactactt tttcactttc ttgttttgct
     3001 gctgtttttg actcttgctt actcggagta cttttttgta tagcttgtga ttttttagaa
     3061 atacttattt tttcatcttc aaaatcaaag tttagaggaa ttttttcctt agcataagca
     3121 acgatacgaa tcatcttagg attgtattgt gaaattacta tgcgataatc atcaaattta
     3181 tattcttttc ttccgccttc taaaataccc tcaaaatcac tgatataacg ataatttcct
     3241 ttttcatcca aggcaaaact ttttatatct ttttgctcta aattggtatt taaatcaagt
     3301 accactcctt gacttgtctt acttgatttt aaaacataaa ccttatctac tttttttgtc
     3361 tgttggggtt tattgttttg tgtttttgtg ctttcttgtt tggtttgtgg gggttttgaa
     3421 gtacttttag gaggttcaaa gcttgaaacc tcgacatttt tagaatcagg ctgaactttt
     3481 tgcttatcct taatcaccgc ttttcttaaa gcattgatgc tagccttact cactccgctt
     3541 tcttctaatt cgttcgcata agatttatca tccaaattta aagcattaga acttataatc
     3601 aatcttttta aaatttcaat tttagttttt tcatcttcat tgatcacact ttgtatataa
     3661 agacttttta gctgatgatg gaacttaact tgagcatcat tttttgacgc gataaaattc
     3721 ttatcaaaat tagcaagctc attttcatat gccccaaaac aaatactaaa aagtgcgata
     3781 caaaaaacta aaattctaaa cattattcac cattgacgag tttatccata agctctttaa
     3841 cactgattaa tttttctaaa cgatagccat tggctcctgt aaagaataat cctgtttctt
     3901 tttttcccga ccatgcatca aaaagcctat ctgctataca ataacccacc tttgtcgcct
     3961 ctttgcctcg gccacatggc gctacacaat tgctgataca attgatcttt ggtcccattc
     4021 ttttatcgac taaatcaagt aaattagtcc ttactcccct tgcaggatat cccactggag
     4081 atttgataag ttctatatct tcttttttac atgcaagcaa tacattttta aactcatcac
     4141 ttgcatcgca ttcaaaagta cctataaaac gagttcccat ttgaaccccg ctagcaccta
     4201 aagaaatggc attttctata tcttttttat cccaaattcc acccgctgca atcactggaa
     4261 aagaacccca atttttagcc tcttcaacca caggtgcgat taaattctca agttgataat
     4321 taggatctaa acattgctca taggtaaaac cttgatgtcc gccgctctta ggtccttcaa
     4381 gcacaacagc atcaggcaga cggttgtatc tactttgcca tcttttacag atgattttta
     4441 aagccttagg tgaagagatt ataggaacta aagcaacatc aggaaaatct gctgtaaatt
     4501 caggtaaatt ggtaggaagt ccagcacctg aaactataat attaaaaccc acttcacaag
     4561 catcacgagc aattcttgca taatcattac ttgcgcataa aatattacaa cccaaaggcg
     4621 catcaccgca aacttttctt gcattattta tcaaagtttg caagccttct cgtgaataaa
     4681 aattttcact accataaggc ttagcattca attctttgct aatatgggtg cgattttcat
     4741 aatatcctgt tccaacagat gagatgatac caagaccgcc atttaatgac actgctgaag
     4801 ccaatttatc ccagcttata ccaagcccca ttccaccttg aaaaatggga tattttatag
     4861 tgtgttttcc tatttgaagg gattttaaac tcatatattc acctttaatt ttgcaaattt
     4921 tctcttacct acttgtaaaa tatactcccc tgtgccaagt tgcatttgct catcgcttac
     4981 tttttgtgaa tttacactca ccgcatttgc attaatgctt cttcttgctg cagaggtaga
     5041 attttccaaa ccgcattcta ctaaagcttt agcaagccaa atttcaccct ctatctcaaa
     5101 ttcttttata tcgcttggca aagcatttcc gctatgtacg ctgtcaaatt cggcttttgc
     5161 agccttagcg ctttcttcat tgtgaaaacg cgtagtaatc tctagcgcca aattttcctt
     5221 agcaagctta ggatgtaaat tgccactaga aatttctttt ttcatatttt caatttcttc
     5281 taaactttta gtacttaaaa gctcataata acgccacatt aactcatcac taatacttag
     5341 aattttagca tacatatcat tagctttttc tgtaacgccg atataattcc ctaagctttt
     5401 actcatttta tttacaccat ctaagccttc taaaagaggc atcatcatca cagcttgttc
     5461 ttttccgata ttgtaaattc tttgcagggt tcttcccatt aagagattga atttttgatc
     5521 tgttccgccc atttctatat cgcattttaa agcaacacta tcatatcctt gaagtaaagg
     5581 atataaaaac tcacatatag aaatagggct ttgctcttta aaacgcttcg taaaatcatc
     5641 acgctctagc attcttgcta cactaaaggt cgaagtaagc tctactatcc cagtagctcc
     5701 tagttcgtta agccattgag aattgaattt taattgtgtc ttttgcggat ctaaaatctt
     5761 aaatacctgc tcctcataag tcttagcatt ttgtaatact tgttccttat caagtttttt
     5821 acgcgtaacg ctttttccac taggatcgcc aatttgtcct gtaaaatcac cgattaaaaa
     5881 ttgaactata gctccgtgtt tttgcaaata tgccattttg gttaaaacca cactatgacc
     5941 taaatgcaaa tcaggtgctg taggatcaaa tcctgctttt acgaaaaaat tttctccctt
     6001 ttcgtaataa tttttaatca aattttcaat tctttcctca tcgatgattt ctgcgcaccc
     6061 tcgtttgatt tctgcaagta tattttttat atccattttc taccttttag tttaagcttc
     6121 tttataagcg tcatttaatg aagtaaaatc taaaatttta caataagatt ttaacctgtc
     6181 tcggacatta tcaggattta tattgtcagg aatttctatc gtgatctcaa aataatccac
     6241 cactgtatta atatcacttg acaaactaat cgttaataaa ttaatctgca ttttagccaa
     6301 aactgccaaa aactctgcta aaattccttt tttattttct aaagaaaaga ttaatttgta
     6361 tgatttaggg atattagaat cccatttaat caaaaccatg tctttattat tgtctatcat
     6421 cttatctgcc ctatcgcaga gtttatgatg aactatagca tttccatttt caataaatgc
     6481 aagtacagca tcgcctcttt ttggatgaca gcagtaatca aaatccacat tagcaatttt
     6541 atgattagaa tacaataaaa aattcccaat cttttgttct ttgatttcgt atttgtcaaa
     6601 ccaataagat tttttagcgt attttttaag cccattgact atatctttca aataagcact
     6661 atcactggct acttgtcgta tgcgtctgcc taaattctct ctttcaatcc aattttctat
     6721 cttgttttta tctacactaa aaataaaact taacatatta atcgcgctta aaagattgat
     6781 ttctctcatt ttttgcttac aaaattctct tatgctcgct tttgcttttc ctgtttttac
     6841 actatcaacc caagaacaac gataaaacct atcattggaa gttacaaccc ttactatatc
     6901 tccattttta agctcggtta aaagagggac ttttacacgg ttaacataag cactttttgc
     6961 atgaagtcct actttagtat gcacctcata agcaaaatca agcacagtag ctcctcttgg
     7021 caaagtaaaa atttcaccct ttggagaata aacagccaca tcttctacat aaagactatc
     7081 ttttgcatac tcataaagct cgatagcatt ataatcttct gcgttttcaa gattgttcgt
     7141 actttgcatc gaaatatcag taagccaatc aagtcgcggg gctacaacac tcccatcttc
     7201 tttgtatttc caatgtgcag ctataccaaa ttcagcgatt ttatgcatat caaaagtacg
     7261 aatttgtgct tcgataatat tttttgtatc aaaaagagtg gtatgtatag tttgatagcc
     7321 attttgtttt ggtaaagcta tgtaatcttt aaaacgcgaa accaagggat taaaatttgt
     7381 atgcaaaacc cctaaagcca aataacaatc gctcacattt tcaaccaaaa ttcgtacacc
     7441 aagcaaatca agcacctctt ctatacccac accttttctt tgcattttaa gatagataga
     7501 ataactgtgt ttgatgcgtt tttgaatttg aaaacttcct tgcctaaagc cattgctaag
     7561 aaataaaagc tcgattttag aaataaattc attaagtcct agttgcattt gctggtcgtt
     7621 tgaattaata taattatcga taagcttata ctcatcaggc atcaaatact taaagcttaa
     7681 atcttctaaa taattcttaa tactagaaat tccaagtcta tgtgctatgg gtgcataaac
     7741 gaccaaagtt tcttcgctaa tacgcttttg cttatcttct cttaaagcat ctaaggttag
     7801 catattgtga agtctatcgc aaagttttac caccaaaacc ccgacatctt caatacttgc
     7861 taaaagcata tttctaaatg taagagcgga tttggttaaa cttttttttg attttgaagg
     7921 aatgagatta tcttctctga tttctacaat ctttgtaaga cctaaaacaa gctttaaaac
     7981 ttcggatcca aactgatccc taagttcttc ttcggtacat tgcgtatctt cgatcacatc
     8041 atgtaaaagc gcagccaaaa ttgtggcttt gttttcactt aaaaaagcaa ccaagcttgc
     8101 aaccaagatg ggatgaactg cataaggttc tccgcttttt ctaacctgac cttcgtggga
     8161 ctttatgcaa taatccacag ctttttctac aatagcatcc tcttgacaaa tgctaaaaag
     8221 aagttctttt gctcttgtta aatctctaca atttttaata tcttcaatga gtttttcgag
     8281 caataattcc tcatcgactg gtttcaacta gaccctctaa agtgatttta ttttctgcta
     8341 tctcatataa agcaatatct gcaaatttta atttactttt atcaatatcc actaaaggtg
     8401 ctgcaccatc ggctaattgt tctgctcttt ttgcaacaac caaagaaaga cggtagcgat
     8461 catctcccat tctttctaga gctttagctg ctatttcttc gattctgttt tccattagtt
     8521 ctccttgatt aatttttaac tatagaacaa agactgttat cgccttgtat aattttaagc
     8581 aaatttcctt cttcaaacat attacataca actataggca aagaattatc cttagctaga
     8641 gcgattgcag tatcatccat aactttaata ttatcttgca ttgcctcatc atagcttagg
     8701 gtttgtaaaa atactgcatc atcgaattta ttaggatctt tatcataaac tccgtttact
     8761 tttgttgctt taataaccat ttgtgcatca atctcaaccg ctcttaagat agctgttgta
     8821 tcggttgtaa aataaggatt tcccgttcct gcggcaaaga ttacaaccct acctttttct
     8881 aaatgtcttt gagctcttct cataatataa gtttcacaaa aagcttccat ttgaatcgca
     8941 ctttgtactc tcacatcaag tccgcaactt tctaaagcct cttgaatagc aatagcatta
     9001 ataacagtcg caagcattcc catgtgatcg ccgcttgtgc gtttgataag accgcctttg
     9061 gctgctgaaa caccgcgaat gatatttcca ccccctatca ctatgcctac ttctatattg
     9121 tttttaacca gttctttaat ctcatttgct atgaatttta aaatagaatt ttcaatacca
     9181 aaaccatttt ctccggctaa agcttctcct gaaaatttta ctaaaactct ttttctctct
     9241 tgcatttttt ctccttaatc aacttgaaat tatattgaaa attgcattaa aattagctaa
     9301 tttaaactaa taagttctaa aggattgata tgaaaattct tttgtgttac ttcaaaagtt
     9361 aaatcatttt ttatcctacc cactaccgca ccttttttta catttttacc gactttgata
     9421 ttaggtgcta tcttatctaa gtgtgcataa atagtatgaa ttccattatc atgttcgact
     9481 atcacaactc ttgctagcat acttgtatct ttggcaaaaa ctatctttcc atctaaaaca
     9541 cttttcacta cagcatcggc tttattgctt cttaaaacaa cattttcatt gaaaatttta
     9601 atattataaa caggatcgat ataatttcca aatttttgtt ttacggtaaa cgattctaaa
     9661 ggggctatag tttttttacc tgtataacgc ttagtagagc ttccttggta gctagatcca
     9721 atttggcgaa ttttttgagt attattgaca attttgctat cgctggcagt tttttgactt
     9781 tgttttttat cctcttgctt gctttctata atttttaatt gatttaaggt ttttcttaat
     9841 tcatcttgct gatcttgcaa attctcaagt tttttagcat aaattgcccg atcggttttt
     9901 tgttttttaa tctcactgac ttgcttttgt cttaaatttt gaagttttgc taattgggta
     9961 ttgtaatctt ttaaatcttc attaattttt ttaatttgtt cttgcttatc atcgattaat
    10021 ttgcttatat cttcataatc cttagaaagt ttaaaaattt catcttgcaa aattttatcc
    10081 aagccaccca aaacctcaaa agccataaaa ctttccttgc tttcaacata accttgcggt
    10141 ataggcaaat cataggcaaa atccttagcc atcaaggcta taagtttgcc ttccatattg
    10201 gctttatttt tcaaaagatc tgtgttttga cttgtgagta aatttaagtc tttattttgt
    10261 gccttggctc gagcttcaag cttgagagtt tgagaattaa gagtttcaat ttgagcactt
    10321 aactctttca agctcttttc tccacttaat atatcattgg ctaaatcttc aagcttttta
    10381 tttacctgct cttgaatgcg tttattttct tctaaattct tagttttttc actaatggca
    10441 ttagcatgca tttcattgga caataaaaaa aaacaaagaa aaattagaat ttttctcatt
    10501 ttttcaccct aaacatcacc gaatttacac agaataaaca tataaacaaa gtcactaaaa
    10561 aaatcacgcc caaatgcacg ataaaattaa taggaggcaa gataatatca accgctttta
    10621 ggctatcttg gactatagaa agattataaa tttgtgtaaa aaatacaaat aaaataataa
    10681 aagcaataaa acaatccaaa accacaatct tatatagcat aaaagatcta aaccaaaaag
    10741 gcgcaccaaa caaacacata atctctacgc gttcagtgtg ttcaaaaagc caaattctca
    10801 tttgttttaa aaacaaaaca aaagaaagca agataatgat aaataaaaac aaccaaaata
    10861 caaatttcat caaaacaagc aaagaataaa ccttatcatg cgttttagca aaagtctcga
    10921 ccttactaat acttggtatg cttaaaagct ggtttttaat ggtattaagc tcattttgtg
    10981 taggcaaata atcaagcttg atgctataaa atttaggtaa agaatctcgt aaaactttta
    11041 aatttttatc agaaatatcg ttttttaaac gatctatcaa atctttagga tctaatggct
    11101 ccaaactaga aaaggaagaa agtttggttt tgataacatt cttatcaagc tcagcagagc
    11161 ttgcaacgat gatattatag tccttattga caagctcttc ataatgtctt aaagtagcat
    11221 ttgtaagtaa aataaactca aaagcaaaca tcataaaaag caaaggcaaa atcaaagata
    11281 agtgggtttt aaaaaatttc attcatattt ccattttcta tattaaaacg acgataattc
    11341 agtcttaaat tgctcggaat tctatgcgta accactacaa cacaagtacc taaaagctct
    11401 ctagctgatt ttaaaagtgt ccaaatgata tctgaagaat actcatctaa atttcctgta
    11461 ggctcatcgc aaagcaaaag cttaggattg tgtgctaaag ctctagccat agctactctt
    11521 tgttgctctc ctccgcttag ttgattgggc aatttatccg ctttaaatgt caaatttaca
    11581 tgctttaaaa gcttacttgc ttgatcatga caaacttttt tactataacc tttaatcata
    11641 agaggaagca tcacattttt ttctacgctg tattcttgta taagtctata atcttgaaaa
    11701 ataataccaa tttgctgacg caattttaaa agctctgaat ttccaatctt tcgcatgaaa
    11761 gatccacata cttcaagctg ccctgaaagg agttctaagt ccccgtaaaa agattttaaa
    11821 agagtgcttt ttccacttcc acttttacct gtaataaaaa caaaatcatc atctttaaaa
    11881 gtgaaactgg cttctttaat aaccaattca tcataaccta aagaaagttt atgcgcttga
    11941 attaaatttg acatcccatc ctctttgaat ttcaaaattc gtaaattatg ctttattttt
    12001 gcttaatttt caagaaaatg tttcatatta aagtgaaatt taacactttt cttaagctct
    12061 tttatagctt ttaaattttc ttgtatctta aaaggctctt taaaaacaaa actaatcgcc
    12121 tctcctatat gtaaataaca atgctcaggc ttattaaaag caccaaaagc tatttttaat
    12181 aataaacttt ccccttgctt ataaatattt tcaaaatgca aaaagaaatc ctcttttttt
    12241 aaagtaaaat tttcaaaatt tttctctaaa agcatcagat catttttact taaatgtata
    12301 tctgaaaaat caaattcttc tgataaaaca ttcttttctt ctttatctaa attccacacc
    12361 caaagatcat aaatatcttt ttcttgtctt ttccatctat cttcgtattt gctagaaatt
    12421 tctaaatttt cattttttct aatgctaaat tgcggtgatg agaattctaa aaattcctta
    12481 aaagtaaagt caaaatactc ataactatcc gttctaagct caaaaacccc ttgggttgta
    12541 agcactcttg cacattcttt gcaaaatgct ttagaaacaa cacggcgatg aggcttttta
    12601 tcccaaggaa ctgggaaatg taggaaaatt ttttctatag aatcagaccg aagaacactc
    12661 aacaaaagtc tagcatcact ttgaactaat aagatattat caataccttg agcgcgtgca
    12721 agcttggcta cctgcgtgat ggctggatta taaatttcta tcccaaggat taaaatttga
    12781 gggttgtttt tagcttggta aagcaaatgt cttcctgaac caaaaccaat ttcgatgtaa
    12841 atttttccct caagtctttc taaaacttct tcaaaatcat tagcaatcaa aggagttttt
    12901 tcggctaaag cattattttt tataccaaaa gcctcgctga taacatcctc gcaaaaatat
    12961 tgcttaaaaa tatataaagc cttatgtaaa taggctattt tagaaggttt ggtatgctta
    13021 tctaccttaa ctacaaattc attttctcct tttttaattt gtagaaaaaa gctttcttcc
    13081 tcgacccttg tgtagattaa attcacatta tcattatatg ccatccacac aaattctacc
    13141 ccatcttttt caaagggtag aatgatttct ttaagttttc tagttttaaa atttggcact
    13201 attgcttcgc cttaactttc tttgaaggct ctgaacgaag accaacagaa tcaatcgcta
    13261 tcacttcata gctatattct acacccggta aagctttaat atcttttaat cttttttctt
    13321 ttacaccctt aaaaatagca ttttgatcac cgccatagcg tctaacttcg tattcaaccg
    13381 ctcttgagtc attatccacc cattctaaat caataccatc actcgtactt tgagccagaa
    13441 taatactagg agaagatgga attcctaaag ttttaccctc taccccatct ttaggcatag
    13501 gactttcaag ctcgtctata tctaccatgg ttactttata gtatttactc tttgcagcac
    13561 cttcaactat atcttcataa gaattttgct cggttttagc caaaagagtg taaggaagaa
    13621 aacttgaact tgtagaataa actttataat acgaaaaatc tttgtattta ggagcgtccc
    13681 atgtcaaaac tactttattg gctccatcta agctcgcatt taaatgctca acttgaggag
    13741 gtaaggcctt gcttgtagaa tttaaaatag aacttggctg gctttgcacc ccatcaaatc
    13801 caacagcaat aattctataa ttaaaactct cctccggttt taaatcctca tctataaatt
    13861 cagcattcaa gcgatttttc acctcggcaa tttttttaaa ttcttgtcca tctgccttag
    13921 ctctttctat gatataagaa gcaactcttg gatctggatg tggacgccaa atcaatttaa
    13981 ttcggcttgg tagattggtg atagcttgtg caaaaggaat agcctctaat cttggcatag
    14041 tttttacttc aatcaccttt ccatcttctg aaatatgacc ttgatcatta aaacttctca
    14101 tcatatagta atattttgta tttggctcaa gcttagcatc tacataatgg gtttgaaatt
    14161 tatttttaat cgttcctaca agtttaaatt caggatttgc atcatttgag cgatataaat
    14221 aaaatccttt gatattatca tcatataaag gatcccattc aaacgctata ttgctaatat
    14281 cactaagact tttaagattg ttaatctttg gcaagctttc attgactaaa agttctttat
    14341 ttgaacctat attagaaagt tgcgaaacac tgcaagcact aaataaaaga gtcaaagcac
    14401 ccaagcaaag actcaagtga aattttttca ttaagctctc ctaaaataaa ttttttttct
    14461 aaaatttgtt taaaatcgtc cattaatgga gcttggataa atattttttc tccatttcta
    14521 ggatgaatga aatacaaaaa atacgcatgc agcataatcc tacactcgta tttcccccta
    14581 tagccatata attcatctcc taaaatatga cgatttatgc tagctaaatg tgctctaatt
    14641 tgatgcgttc tacccgtaaa aagcttagcc ccaataagac tcacttcctc gctttttgcc
    14701 aagttaacaa aagcactttt agcctcctta gaacccttaa caaagctatt tgtaactatt
    14761 tttttaatag cattagcact ggatcgaatc aaagctttat ctatgataat tttatcctct
    14821 tttagtggca aatcaattaa cgcaagataa attcttccca tagttttatc actaagctgc
    14881 tcactaagct tttgatgagt aaaattattt tttgctatca atatagctcc gcttgtttcc
    14941 ttatcaagcc tatgaacaag ccctgcgcgc acttctccgc ctaaggtaga aagggtgtat
    15001 tgtttttcta taagccaatc caccaaagtc gcactcttaa cactttttgc tccatgaaca
    15061 accaaatttg aaggtttatt taaaaccaac aaatcctcat cttcgtataa aatttctata
    15121 tcaaaatcta tatcaaattt aggcttagct tcctctacaa gtggcaaatt taaaacaagt
    15181 ttatctccga cttttaactt gaatgaattt ttattttgaa ttttatcatt aacccaaacg
    15241 cagttttttt ctatcatcga ggctatttga ttgcgacttt gctgaagatt tttagctaaa
    15301 aaaatatcga gccttgaagg ttcatcaact aaaaaa
//
LOCUS       DBBXRO010000031        14744 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.031, whole genome shotgun sequence.
ACCESSION   DBBXRO010000031 DBBXRO010000000
VERSION     DBBXRO010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14744
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.031"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..499
                     /locus_tag="ACJFEZ_000715"
     CDS             <1..499
                     /locus_tag="ACJFEZ_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HGG0916853.1"
                     /translation="FSYILLGIIFGIFGNLLAINAKIQSLSFFILGVFMVILGFSLIF
                     RGKILAFIENRTFFEYFIKKIIKKSMGFKGVKSAMILGFANGFVPCGLVYFFLANAMS
                     RQNVTESILVMLVFGLSTLPAMLFFVKISQYLGVFLKKVFNYLSYFIIVAYGIGLAYM
                     GFKAF"
     gene            500..1714
                     /gene="bumS"
                     /locus_tag="ACJFEZ_000716"
     CDS             500..1714
                     /gene="bumS"
                     /locus_tag="ACJFEZ_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate sensor histidiine kinase-like
                     phosphatase BumS"
                     /protein_id="HGG0916854.1"
                     /translation="MANSVAEQVLKVIEKKTIFFKINLQGIIIDASEKFCKISGYSKK
                     ELIGKHHFILKHPDVKESYINQLLGKLWQKEAYWVVFKNVDKLGKTFYLDAFLIPIVD
                     NKGDLNEIIALSYDISNSFKLNEELVLNHAKLREISVNLEKTAKERKEEFAKLSKDFE
                     YKLKVALEKNEKDTKKIYKEILNSSIEQMISDIAHQWRQPLNELGIAMFQMKQNVQDE
                     KGFTEIYLQSKSTIKNMSETIDIFRTLFKNNENEKNHVSLREILNKVIGIAFETIEKH
                     QVNTRIISKTDYRVIAHENGLMRVFLNLIINSIEAFKTQKVKNIIFSFSKFGKNYIKV
                     KVKDNAGGVDEDILDKIFQPYITTKHPSQGIGAGLYISKQIVESFGGKIQVKNIKDGA
                     CFEIYLKLQEGN"
     gene            1718..2386
                     /gene="bumR"
                     /locus_tag="ACJFEZ_000717"
     CDS             1718..2386
                     /gene="bumR"
                     /locus_tag="ACJFEZ_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate response regulator transcription factor
                     BumR"
                     /protein_id="HGG0916855.1"
                     /translation="MKELVILVVEDEAKIRESLVNVLSSRYSKVIGAQNGDEGLKKFK
                     KFKPDLIITDIAMPIMDGLDMAKEIKEIANDVPIVVLSAYSEKERLLRSIDIGIDKYL
                     IKPVDVDELFKVLDYLVGEKIETNALVDISKEYQFNKTKRILIHKGQEIVLTKKELAF
                     ISLLLKQPGVLVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEKFIKNVPGLGYKI
                     NIEN"
     gene            2515..3981
                     /gene="ccoN"
                     /locus_tag="ACJFEZ_000718"
     CDS             2515..3981
                     /gene="ccoN"
                     /locus_tag="ACJFEZ_000718"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HGG0916856.1"
                     /translation="MHPGNALNYDYTVAKYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESKFLMAIGKL
                     HFWLYMITMIVAVISLFAGVSTSKEYAELEWPLDILVVLIWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMAVPTYFVVEMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRIFRRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIIPYYWIRAI
                     GGLLYLIGFFMFTYNIYKSIACGKVLDKEPKSASPMAA"
     gene            3994..4659
                     /gene="ccoO"
                     /locus_tag="ACJFEZ_000719"
     CDS             3994..4659
                     /gene="ccoO"
                     /locus_tag="ACJFEZ_000719"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HGG0916857.1"
                     /translation="MFSWLEKNPFFFAVAVFIVIAYAGIIEVLPNFAENARPIEGKKP
                     YTVLQLAGRQIYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLMRVGNYRTTDWHENHMWDPVSVVPNSIMPAYKHMFKNNADMETAYAEALTVKKVF
                     NVPYDTENGTKLGTWEEAQAEIKAEAQAIVDQMKNQEVKDAFARGEIKEIVALIAYLN
                     SLK"
     gene            4664..4927
                     /locus_tag="ACJFEZ_000720"
     CDS             4664..4927
                     /locus_tag="ACJFEZ_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HGG0916858.1"
                     /translation="MEHLVIIWNVIKNLVTLNLSAVQKHEWEIFQGYGFFLFVMFLSI
                     VLYSYWYHLYRAEKKGERNYEKYANLALSDDIDDSVLESKRSA"
     gene            4927..5790
                     /locus_tag="ACJFEZ_000721"
     CDS             4927..5790
                     /locus_tag="ACJFEZ_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HGG0916859.1"
                     /translation="MQWLNLQDNVNLLSFIGAILIILITLVVVGRMFKYMKEKKGEAE
                     LSEHSWDGIGEYKNAIPIGWAVIFFLTIVWAVWYFLWGYPLNSYSSIGEYNEEVKAYN
                     TKFEEKFQNLSTEDKVAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGLIDAI
                     KHGAKGMNFPGGEMPAAADLGIAEEDIPAIAAYVAKELSAIKKTSNENLVAKGKEAYA
                     TCAACHGEDGKGQDGIFPDLTKYGSAAFVVDVLHSGKTGFIGAMPAFSILNDTQKEAV
                     GEYVISLSRGE"
     gene            5787..6011
                     /locus_tag="ACJFEZ_000722"
     CDS             5787..6011
                     /locus_tag="ACJFEZ_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HGG0916860.1"
                     /translation="MMENTNRCVFSLSGVTGMLIATVLLLAILVGLTIWGLKAQQEVM
                     QQPYSLKDIQNVKMLGSKEQDHKSIGGTAQ"
     gene            6008..6109
                     /locus_tag="ACJFEZ_000723"
     CDS             6008..6109
                     /locus_tag="ACJFEZ_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916861.1"
                     /translation="MSKVLEYLIVIGLVVTAAITAWSVLTANHLHIG"
     gene            6106..6696
                     /locus_tag="ACJFEZ_000724"
     CDS             6106..6696
                     /locus_tag="ACJFEZ_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916862.1"
                     /translation="MRKILQDGLLAIFLFFIPVQILALEPVVFNENVLNQKVVDEINL
                     IGKELQEKSGIFAGVAIGDKSDFQTLLDLHKQLPQSYVLLVLSKNSHKVDIIGSKGAL
                     TLIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYGDMVDRLAQARGIELQHSIG
                     NANRDTINILRILIYGFICFALLYYAQRRMKRKKNA"
     gene            6689..7213
                     /locus_tag="ACJFEZ_000725"
     CDS             6689..7213
                     /locus_tag="ACJFEZ_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HGG0916863.1"
                     /translation="MLESKKTFWPYGILISIFAIVVACVATIIVASNYPVYEDDFYFD
                     SYQNVENNYNIIQKQQEQFDTLFKVEFQNDKIDLIGKRKIASYTISADSYLAQFKITA
                     LNDQANIQNLKSEILLTRPHTREFDQKLLGQIQDGVLSVSLPQLEKGRWQLKIKLSTD
                     DEITGFFSYELNVQ"
     gene            7210..9576
                     /locus_tag="ACJFEZ_000726"
     CDS             7210..9576
                     /locus_tag="ACJFEZ_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HGG0916864.1"
                     /translation="MILRIFSSSRKIKEYQEKAKAKNALLDSAFLVSDFLDRVCVVNS
                     FKASSYESLLLMQEACLKSKDLEKKLGISAEFFAFLKNNEYLFSFFKELSLEKKSIQD
                     LKNNDYYATYNEHLEILDEVYTNYLLLLKQHNLYDDLSLAQEYKLNLDFLNEYESIYY
                     DLQGFLSKFEEDLLCEISKIKSTIISFKTSKFNLEYLLELDFLKDIHLELDMFYEVNL
                     SQKKILKQEKLSNPNTLVKLKAFELRSLQCAFVMDEISNFVRAGIDPEKIAVITPDES
                     FCELLKLFDKNNMLNFASGVSIKESLFYQKIKALYNGANSDAFIYKIDENYFEQEKMI
                     FDYHNTLLHYLELQFEDFRTRFDQICDLQYFENLIHSFLKDESQELMNLVQKELCFIK
                     DLLKNKSLKLKELMQLFFMQLDQIKLSYVGGGKVTVMGLLESRGLSFDGVVILDFNED
                     FVPKRSINELFLNNEVRKKAGLISYERRENLQRLYYENLMKNAKKLSISFVENEEQTR
                     SRFLDELDFNFFEEKTTPSKAYLNALKLDYQGVELNLNPIKVPVLKHDIFEKELSFSR
                     LNLFLYQKRTYFYRYILELPEARALSDESKAKNQGNFIHKMLEFYYKNYSKNNFNLKI
                     FNDLLEQEYQKYGISELELEIFKLKFIQFAKNEEEHFKLGYKVIEQEEEHHKTLNIQN
                     HTIRLKGIVDRIDKLEDKHFIIDYKSGKVPEKSFQLAFYKALCDENAEAKFYDLNQMQ
                     FVEEKAKSLDELKECLKDLLEQREEEIEFENDKDEYCPYKIIYKKDFR"
     gene            9573..12335
                     /locus_tag="ACJFEZ_000727"
     CDS             9573..12335
                     /locus_tag="ACJFEZ_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HGG0916865.1"
                     /translation="MKFKPFLALEASAGSGKTFALSVRFVALILQGAKINEILALTFT
                     KKASNEMKKRIIETFLNLEKESKKSECKELCELLGCEEDELIFLRDKKKQEFLRQELK
                     ISTFDSFFSRILRAFALNLGLSSDFDTSEEKLDVRAVFLKLLNRQELKDLAYYKVSLE
                     DNHDFFEELENFYENAYFKECVRIPNPSKASINQAYDDLRVYCLSLDHVKGYKYLCTH
                     FKDEVLQLSQFAKSDLLNLTGAPKYLQELEDSDAKFSQKRKAFIKALDAYAKELEEYK
                     IANLMNLLSHFSKAKDIIQKDKNTLSFSDISRRVLDLIRSDFKDMIYFRLDGYISHLL
                     IDEFQDTSVVQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDLL
                     QTEFKQIQKDQLTINYRSKQILVDFVNKTFQSKIKDYTPQLSLESKKGGFVRVIESQE
                     TKVDKDQAKEIQDKTLEALLEQLKFLKSKNIIYDDICILCWKNNDADMILDFLHEQDI
                     PAFTQSNILLENKACIRVLLEYAKYCIFGDKFYLHFLKEMLGFEPLKLKLDLAKSAVQ
                     NVLYLIKELKLDLNDMALIQFIEYAKSKDDFLKLLFEPCTLKIMSEQNRGINIMTVHK
                     SKGLEFDHVILLDSLSKNNPNNKTIMLEYDIDQGWELHIKDSYRKATQESEYKAFIDK
                     ITKADYEDDINKLYVAFTRAKDNLIIIKRNASFQSGNYPSYLNTMLDIEIQELGEIEI
                     QTNDTHLPQKESFQALMEFEKIPLQDIERKENTSSDEIYFGNAFHFFMQNLKLPQGEN
                     FDILCQKVSGKFRHFLNHDDFERLFKRIKNLLANAQFQKLIENKKLLKEQALSFQGEI
                     KQLDLLALGEDEAIIIDYKTGLNFNKHKEQVLLYKEAIEKILAKKSTQAFLVYVLEDK
                     VEIIEI"
     gene            complement(12332..12694)
                     /locus_tag="ACJFEZ_000728"
     CDS             complement(12332..12694)
                     /locus_tag="ACJFEZ_000728"
                     /inference="COORDINATES: protein motif:HMM:NF026253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WG repeat-containing protein"
                     /protein_id="HGG0916866.1"
                     /translation="MDKNGKIVIEPKFDGVGNFSEGLAAVGLNGKWGFIDKNGEFAIK
                     PKFDDIWDFREGLASVGLNGKIGLIDKSGKFVIKPKFDSIWSFREGLAKVELNGKYGL
                     IDKSGKIVIEPKFDDIRY"
     gene            complement(12713..13009)
                     /locus_tag="ACJFEZ_000729"
                     /pseudo
     CDS             complement(12713..13009)
                     /locus_tag="ACJFEZ_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837059.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="WG repeat-containing protein"
     gene            complement(13022..13894)
                     /locus_tag="ACJFEZ_000730"
                     /pseudo
     CDS             complement(13022..13894)
                     /locus_tag="ACJFEZ_000730"
                     /inference="COORDINATES: protein motif:HMM:NF026253.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="WG repeat-containing protein"
     gene            complement(13894..14694)
                     /locus_tag="ACJFEZ_000731"
     CDS             complement(13894..14694)
                     /locus_tag="ACJFEZ_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HGG0916867.1"
                     /translation="MLSLKFKIQEYLQCKNCLKINPEEDAKFCIFCGKGLNHPARQRL
                     DYIYSKNPAIIVALLAKVAKADDKIITKDLSKFISSLLDKIEMFYSKEYSGFRNTYAS
                     IFEYEKNQGRSIHELCTSARFYEKEIDFLICLLLDLIYYDAKMSANENALMENIIVGL
                     GLNLIKFREVKLKYEQIYNFTHEKAQQEQPKEDKFTITLEQAYEILNSHPKDDFETIK
                     KNYRKLAKEYHYDNLHSKELPPELLKIAQEMMKKINLAYEIIKETRGA"
BASE COUNT         5036 a         2048 c         2547 g         5113 t
ORIGIN      
        1 tttttcttat attttattgg gaataatctt tgggatattt ggaaatttat tagctataaa
       61 tgccaagatt caaagcttat ccttttttat actcggtgtg tttatggtaa ttttaggttt
      121 ttctttaatt tttagaggta aaatccttgc ttttatcgaa aatcgcactt tttttgagta
      181 ttttataaaa aagattatta aaaaatctat gggttttaag ggtgtaaaat cggcaatgat
      241 tttaggtttt gctaatgggt ttgttccttg tggtttggtg tatttttttc tagcgaatgc
      301 aatgagtagg caaaatgtta cagaaagcat tttggttatg ctagtttttg gtctttcaac
      361 ccttccagca atgctttttt ttgtcaaaat atcacaatat ttgggtgtat ttttgaaaaa
      421 agtatttaat tatttatctt atttcattat tgtagcttat ggaataggtt tagcttatat
      481 gggttttaag gctttttaaa tggcaaattc agttgccgag caagttttaa aagtaataga
      541 aaaaaagaca attttcttta agatcaattt gcaaggtata attatcgatg caagtgaaaa
      601 attttgcaag ataagtggtt atagtaaaaa agagttgatt ggaaagcatc attttatttt
      661 aaaacatcct gatgttaaag aaagttatat caatcaactt ttaggaaaac tttggcaaaa
      721 agaagcttat tgggtggttt ttaaaaatgt cgataagcta ggcaaaactt tttatcttga
      781 cgcattttta attcctattg tagataataa gggtgattta aatgaaatta ttgctttatc
      841 ttatgatatt agcaattctt ttaaattaaa tgaagaactt gtattaaatc atgcgaaatt
      901 gcgtgaaatt agtgtaaatc ttgaaaagac agctaaagag cgcaaggaag aatttgcaaa
      961 actaagcaaa gattttgagt ataagcttaa agttgcttta gaaaaaaatg agaaagatac
     1021 aaaaaagatt tataaagaaa ttttaaattc ttctatagag cagatgatta gcgatattgc
     1081 acatcagtgg agacaacctc taaatgagct tggtattgct atgtttcaaa tgaaacaaaa
     1141 tgttcaagat gagaagggtt ttaccgaaat ttatctacaa tctaaaagta cgataaaaaa
     1201 tatgtcagaa acaattgata tttttagaac tttatttaaa aataatgaaa acgaaaaaaa
     1261 tcatgtttct ttaagagaaa ttttaaataa ggtaattggc attgcttttg aaaccataga
     1321 aaaacatcaa gttaatactc gaataatctc aaaaacagat tatagagtta tagcgcatga
     1381 gaatggccta atgagagttt ttttaaattt aattataaat tccatagagg catttaagac
     1441 tcaaaaagta aaaaatatta tatttagttt ttccaaattt ggaaaaaatt atattaaagt
     1501 caaggttaag gataatgcag gcggggttga tgaagatatt ttagacaaaa tttttcaacc
     1561 ctatattaca actaaacatc ctagtcaagg tataggagcg ggactttaca tcagcaagca
     1621 aatcgtagag agttttggtg gaaaaattca agttaaaaat ataaaagatg gtgcttgttt
     1681 tgagatatat ttaaagttgc aagaggggaa ttaaattatg aaagaattgg ttatattggt
     1741 tgtagaagat gaagcaaaaa ttagagaatc gcttgttaat gttttatctt ctcgttacag
     1801 caaggtaata ggtgcacaaa atggtgatga gggtttaaag aaatttaaaa aatttaagcc
     1861 cgatttgatt attacagata ttgctatgcc tatcatggat gggcttgata tggcaaaaga
     1921 aattaaagaa atagcaaatg atgttcctat tgtagtgctc agtgcttatt cggaaaaaga
     1981 aagattgttg cgttctattg atataggtat agataaatat ttaatcaaac ctgtagatgt
     2041 agatgaactt tttaaagttt tggattattt agtgggtgaa aagatagaaa ctaacgcgct
     2101 tgttgatatt tctaaagagt atcaattcaa taagactaaa agaatattaa ttcataaagg
     2161 acaagaaatt gttttaacca aaaaagagct tgcttttatt tcattgcttt taaagcagcc
     2221 tggggttttg gtattgcatg aagatattaa gaagaatgtt tggataggtg agcatgttag
     2281 cgatactgcg gttagaactt ttataaaaag agtaagagat aaagttggag aaaaatttat
     2341 taaaaatgtt ccaggtttgg gatataaaat caatatagaa aattaggaca aaaaatttct
     2401 ttaaaatata aaaaataaca aatgattaac aaaaatattg gctttaagaa aaaatgtata
     2461 attaatagtc tataatataa acttgttatc ttaaaaattt taaggagaaa gtcgatgcac
     2521 ccaggtaatg cattaaatta cgactataca gttgcaaaat actttatgtt tgcgactata
     2581 ttgttcggga ttgtaggtat ggctatagga actcttatag cttttcaaat ggcatatcct
     2641 aatctaaact atttagcagg cgaatatgct actttttcaa gacttagacc gcttcatact
     2701 tctggtgtga tttttggttt tatgctttca gggatttggg caacttggta ttatatagga
     2761 cagcgtgttc ttaaagtaag tatggctgaa tccaaatttc taatggctat aggcaagctt
     2821 catttttggc tttatatgat taccatgatt gtagctgtaa tttctttatt tgcaggtgta
     2881 agtacctcta aagagtatgc tgaacttgag tggcctttag atattcttgt tgtgcttatt
     2941 tgggttttat ggggtgtaag catttttgga cttattggaa ttcgccgtga aaaaaccctt
     3001 tatatttctc tttggtatta catagctaca tttttaggta ttgctatgct ttatcttttt
     3061 aacaatatgg cagttccaac ttattttgtt gtagaaatgg gtaaatggtg gcatagtgta
     3121 tctatgtatg cagggacaaa tgatgcttta gttcaatggt ggtatgggca caatgcggtt
     3181 gcttttgtat ttactgtggg tattattgct caaatttatt atttcttacc aaaagaaagc
     3241 ggtcaaccga ttttctctta taaactttct ttatttgcgt tttggggctt gatgtttgtt
     3301 tatctttggg caggtggaca tcacttgatt tattcaactg tgcctgattg gatgcaaact
     3361 atgggttcgg ttttctctgt agtattgatt ttaccttctt ggggttcagc gataaatatc
     3421 ttacttacta tgaagggtga atggagtcaa cttcgtgaaa gtcctttgat taaatttatg
     3481 attttagcat caactttcta tatgttctca acacttgaag gcccaattct ttcaattaaa
     3541 tcagtaaatg ctctagctca ctttacagat tggattccag gacatgttca tgatggaact
     3601 ttaggttggg ttggttttat gactatggca gcactttatc atatgactcc tagaatattt
     3661 agaagagagc tttatagcaa atctttaatg gaagcacaat tttggattca aactacaggt
     3721 atagtgcttt attttgcttc tatgtggata gcaggtatca ctcaaggtat gatgtggaga
     3781 gctacagatg aatacggcaa cttgctttac agctttattg acactgttgt agctattata
     3841 ccttattatt ggattagggc aattggtggt ttattatatc ttataggatt tttcatgttt
     3901 acttataata tttataaatc aattgcttgt ggaaaagtgc ttgataaaga gccaaaaagc
     3961 gcttcgccta tggctgcata aaaaggagag aaaatgttta gttggttaga aaaaaatcca
     4021 ttcttttttg ctgtcgctgt ttttattgtg attgcttatg ctgggattat tgaagtgctg
     4081 ccaaattttg cagaaaatgc aagacctata gaaggaaaga agccttatac agttttacag
     4141 cttgcaggac gccaaattta tatcaaagat agctgtaatg cttgtcattc acagcttatt
     4201 cgtcctttta aatctgaaac tgatcgttat ggtatgtatt ctgtcagtgg cgaatttgct
     4261 tatgatagac cttttctttg gggttcaaaa agaacaggtc ctgatttaat gcgtgttgga
     4321 aattatagaa ctacagactg gcatgaaaac catatgtggg atcctgtttc agttgttcca
     4381 aattctatta tgcctgctta taagcatatg tttaaaaaca atgccgacat ggaaactgct
     4441 tatgcagaag ctttaactgt taaaaaagtg tttaatgtcc cttatgatac tgaaaatgga
     4501 accaagttag gtacttggga agaagcacaa gctgaaataa aagccgaagc acaagctata
     4561 gttgatcaaa tgaaaaatca agaggtaaaa gatgcttttg ctaggggcga gattaaagaa
     4621 atcgttgctt taatcgctta tttaaatagc ttaaagtaaa aatatggaac atttagtgat
     4681 tatttggaat gtgattaaaa atttggtcac tttgaattta tcagcagtgc aaaaacatga
     4741 atgggaaatt tttcaaggtt atggattttt tctatttgta atgtttttat caatagtatt
     4801 gtattcttat tggtatcatc tttatagggc agaaaaaaaa ggcgagagaa attatgaaaa
     4861 atatgcaaat ctcgctttga gcgatgatat cgatgatagt gttttagaaa gtaaaaggag
     4921 tgcttgatgc aatggttaaa tttgcaagat aatgttaatt tattatcttt cattggagcg
     4981 attcttatta tattgattac tcttgtagtc gttggtagaa tgtttaaata tatgaaagag
     5041 aaaaaaggtg aggcagaatt aagtgagcat agctgggatg gcataggaga atataaaaat
     5101 gcgattccaa taggctgggc tgttatattc tttcttacca tagtatgggc agtttggtat
     5161 tttttatggg gatatccttt aaattcttac tcaagtatag gtgagtacaa cgaagaagtt
     5221 aaggcttaca atactaaatt tgaagaaaaa ttccaaaact tatctactga agataaggta
     5281 gctatgggac aaaatatctt tttggttcaa tgctctgctt gtcatggaat tactggtgat
     5341 ggtatcaatg gaaaagctca aaatttaaat atttggggta gcgaagaggg tttaatcgat
     5401 gcgattaaac atggtgcaaa aggtatgaat ttcccaggtg gagaaatgcc tgctgctgcg
     5461 gatttgggaa ttgctgaaga agatattcct gcgattgctg cttatgtagc aaaagagctt
     5521 tctgctatca agaaaacttc taatgaaaat ttggttgcta aaggaaaaga ggcttatgca
     5581 acttgtgcag cttgccatgg tgaagatgga aaaggtcaag atggaatttt ccctgatctt
     5641 acaaaatacg gctcagcagc atttgttgta gatgttttac atagtggtaa aacaggcttt
     5701 attggagcta tgccagcatt ttctatattg aatgatactc aaaaagaagc tgttggtgag
     5761 tatgtaattt ctctttcaag gggtgaataa tggaaaacac taatagatgc gtattttctc
     5821 tttcaggtgt tacgggtatg ctgattgcta ccgttttatt gcttgcaatt ttagtaggtt
     5881 taaccatttg gggtcttaaa gctcaacaag aagtaatgca acagccctac agccttaaag
     5941 atatccaaaa tgttaaaatg cttggttcaa aagaacaaga tcataaaagc ataggaggga
     6001 cagcgcaatg agtaaagttt tagaatattt gattgttatt ggcttagttg tgactgctgc
     6061 gattactgca tggtcggttt taactgcaaa ccatcttcat ataggatgag aaaaatacta
     6121 caggatggct tattagccat ctttttattt tttatacctg tgcaaattct tgcccttgag
     6181 cctgtagttt ttaatgaaaa tgtacttaac caaaaagttg ttgatgagat taatcttatc
     6241 ggtaaagaac ttcaagaaaa aagcggaatt tttgccggcg tagcaattgg cgataagagc
     6301 gattttcaaa ctttattaga cttgcataag caactcccac aatcttatgt tttgcttgtt
     6361 ttatctaaaa attctcataa agtcgatatc ataggttcta aaggagcttt aactttaatc
     6421 gataaagaag ctgtgcttag tccttatcca ggaacaggat ctattttgcc tattttagcg
     6481 accaataaag gcgatattta taatgcggct attttaaatg gctatggaga tatggttgat
     6541 cgtttagcac aagctagagg gattgaattg caacactcta taggcaatgc aaaccgcgat
     6601 actatcaata ttttaagaat tttaatctat ggctttattt gctttgcgtt gttatactac
     6661 gctcaaagaa gaatgaaaag gaagaaaaat gcttgaaagt aaaaaaacct tttggcctta
     6721 tggaatttta atttcgattt ttgctattgt ggttgcttgt gtggcaacta ttatagtggc
     6781 aagcaattat cctgtatatg aggatgattt ttattttgac tcttaccaaa atgttgaaaa
     6841 taattataat attatccaaa aacaacaaga gcaatttgat accttgttta aggttgaatt
     6901 tcaaaatgat aagattgatt tgattggtaa aagaaagatt gcaagttata caatcagtgc
     6961 agattcttat ctagcgcaat ttaaaataac agccttaaac gatcaagcaa atatacaaaa
     7021 tttaaagagt gaaattttac ttacaagacc ccacacaaga gaatttgatc aaaaactttt
     7081 agggcaaatt caagatggag ttttaagtgt atccttgcct cagcttgaaa aaggtagatg
     7141 gcaactcaaa atcaaactta gcacagatga tgaaataaca ggctttttta gctatgaatt
     7201 aaatgttcaa tgatactaag aatatttagt tcctcaagaa agattaaaga atatcaagaa
     7261 aaagcaaagg ccaaaaacgc tttacttgat tctgcttttc ttgtatcaga ttttttagat
     7321 cgagtatgcg tggtaaattc ttttaaagca agctcttatg agagcttgct tttaatgcaa
     7381 gaagcttgtt taaaaagtaa agatttagaa aaaaaactag gtatttcagc tgaatttttt
     7441 gcttttttga aaaataacga ataccttttt tcttttttta aagaattaag tttagaaaaa
     7501 aaaagtatac aagatcttaa aaacaatgac tattacgcaa cttataatga gcatttagaa
     7561 attttagacg aggtttatac aaattatctt cttttgctta agcaacacaa tttatacgat
     7621 gatttatcct tagctcaaga atataaactt aatttagatt ttttaaacga atacgaaagt
     7681 atatattatg atttacaagg ttttttaagc aaatttgaag aggatttgtt gtgtgagatt
     7741 tctaaaatca aaagcacaat cataagcttt aaaacaagca aatttaatct tgaataccta
     7801 ctagaacttg actttttaaa agatatacac ttggaacttg atatgtttta tgaagtcaat
     7861 ctttcacaaa aaaagatttt aaaacaagaa aaactttcaa atcctaacac tttagtcaag
     7921 ctaaaggctt ttgagcttag gtctttacaa tgtgcttttg ttatggatga aatttctaat
     7981 tttgtccgag caggaataga tcctgaaaag atagctgtta tcactcctga tgaaagtttt
     8041 tgtgagcttt taaaactttt tgataaaaac aatatgttaa attttgctag tggagtaagc
     8101 attaaagaaa gtttgtttta tcaaaagatc aaagccttat ataatggagc aaattcagac
     8161 gcttttatct ataagataga tgagaattat ttcgaacaag aaaaaatgat ttttgattat
     8221 cataatactt tgttgcatta tttagaactt caatttgaag attttagaac tcgctttgat
     8281 caaatttgtg atttgcagta ttttgaaaat ttaatccaca gttttttaaa agatgaaagt
     8341 caagagctta tgaatttggt gcaaaaagag ctttgtttta taaaggactt gctcaaaaac
     8401 aaatccttaa agcttaaaga actcatgcaa ctttttttca tgcaattaga tcaaataaag
     8461 ctaagttatg tgggtggtgg aaaagtcact gttatgggac ttttagaaag caggggactt
     8521 agttttgatg gtgttgtcat acttgatttt aatgaagatt ttgttcctaa aagaagtatt
     8581 aatgagttgt ttttaaacaa tgaagtgcgt aaaaaagcag ggcttataag ctatgaaaga
     8641 agagagaatt tacaaagact ttattatgaa aatttgatga aaaatgctaa aaaacttagc
     8701 attagttttg tggagaatga agagcaaact cgatcgcgtt ttttagatga gcttgatttt
     8761 aatttttttg aagaaaaaac cacaccttct aaagcctatt taaatgcttt aaaactcgac
     8821 tatcaaggcg tagagttaaa tttaaatcct ataaaagtac ctgttttaaa acacgatatt
     8881 ttcgaaaaag aattatcgtt tagtcgtttg aatttatttt tatatcaaaa aagaacttat
     8941 ttttatcgct atattttaga attacctgaa gctagagcct taagcgatga aagcaaggct
     9001 aaaaatcaag gaaattttat ccataaaatg ctcgagtttt attataagaa ttattctaaa
     9061 aataatttta acctaaaaat tttcaatgat ttgttagagc aagaatatca aaaatacggc
     9121 attagcgaac ttgagcttga aatttttaaa ttaaaattta tacaatttgc caaaaatgaa
     9181 gaagagcatt ttaaattagg ttataaggtg attgagcaag aagaggaaca tcataaaact
     9241 ttaaatatcc aaaatcatac gatcaggctt aagggtattg ttgatcgtat tgataagctt
     9301 gaggataaac attttatcat tgattataaa agtggaaaag tccctgaaaa atcctttcag
     9361 ctagcttttt ataaggcttt atgcgatgaa aatgcggaag caaaatttta tgatttaaat
     9421 caaatgcaat ttgttgaaga aaaggccaaa agcttggatg agcttaaaga atgtctaaaa
     9481 gatttgcttg agcaaagaga agaagagatt gaatttgaaa acgataaaga tgagtattgc
     9541 ccttataaaa tcatctacaa aaaggatttt agatgaaatt taagcctttt ttagccttag
     9601 aagcaagcgc aggaagcggt aaaacttttg ccttaagtgt gcgttttgtg gctcttattt
     9661 tacaaggagc aaaaataaat gaaattttag ctctaacttt taccaaaaaa gcaagcaacg
     9721 aaatgaaaaa aaggattatc gaaacttttt taaatttgga aaaagaaagt aaaaaaagcg
     9781 agtgtaaaga gctttgtgag cttttagggt gcgaagaaga cgagctgata tttttaagag
     9841 ataagaaaaa acaagagttt ttaagacaag agcttaagat aagcacattt gattcttttt
     9901 ttagtcgaat tttaagagcc tttgctttaa atttgggatt aagtagtgat tttgatacaa
     9961 gtgaagaaaa gctcgatgtt agggctgttt ttttaaaatt actcaaccgc caagaattaa
    10021 aagatttagc ttattataag gtgagtttag aagataatca tgattttttt gaagagcttg
    10081 agaatttcta tgaaaatgcg tattttaaag aatgcgtaag gattcctaat ccttcaaaag
    10141 cttctatcaa tcaagcctat gatgatttaa gggtttattg tttaagctta gatcatgtca
    10201 aaggatataa atatttatgc acgcatttta aagatgaagt gcttcaatta agccaatttg
    10261 caaagtcaga tcttttgaat ttaacaggtg ctccaaaata cttgcaagaa ttagaagata
    10321 gcgatgctaa attcagccaa aaaagaaaag cattcatcaa agctttagat gcttatgcta
    10381 aagagcttga agaatataag atcgcaaatt taatgaatct tttaagccat tttagcaagg
    10441 ctaaagatat catccaaaaa gataaaaata ctttaagctt tagcgatatt agccgaaggg
    10501 tgctagatct tatcagaagt gattttaaag atatgattta ttttcgcttg gatggctata
    10561 tttctcattt attaatcgat gaatttcaag atactagcgt ggtgcagtat caaattttaa
    10621 gacctttaat cgccgagctt gtttcgggcg agggcgtgaa gaaaaataga accttttttt
    10681 atgtgggcga taaaaaacaa agtatctatc gttttagaaa gggtaaaaaa gaactttttg
    10741 atttgttgca aactgaattt aaacaaattc aaaaagatca actcacgatc aattaccgct
    10801 ctaaacaaat tttggttgat tttgtcaata aaacctttca aagcaagatt aaagactaca
    10861 cccctcaact ttctttagaa agcaaaaaag gtggctttgt gcgtgtgatc gagtcgcaag
    10921 aaacaaaggt ggataaagat caagctaaag aaattcaaga taaaacccta gaagctttgc
    10981 tagagcagct taaattttta aaaagtaaaa atatcattta tgatgatatt tgcattttgt
    11041 gttggaaaaa taacgatgcg gatatgattt tggatttttt acacgagcaa gatatcccag
    11101 cctttactca aagtaatatt ttactcgaaa ataaagcctg cataagagtg cttttagaat
    11161 acgctaaata ctgcattttt ggcgataagt tttacttgca ttttttaaaa gaaatgttag
    11221 gttttgagcc tttgaaatta aagcttgatt tggcaaaaag tgctgtgcaa aatgtgcttt
    11281 atttgatcaa agaattaaaa cttgatctta atgatatggc tttgattcag tttatagaat
    11341 acgctaaaag caaggatgat tttttaaagc ttttgtttga gccttgcact ttaaaaatta
    11401 tgagtgagca aaatagaggt ataaatatca tgactgtgca caaatccaag ggcttggaat
    11461 ttgatcatgt gattttactt gatagtcttt caaaaaacaa tcccaacaat aaaaccataa
    11521 tgcttgagta cgatatcgat caaggttggg agcttcacat aaaagatagc taccgaaaag
    11581 cgactcaaga gagcgaatat aaagctttta tagataaaat cacaaaagca gattacgaag
    11641 atgatatcaa taagctttat gttgctttta caagggcaaa agacaatctt atcatcatca
    11701 aaagaaatgc ctcgtttcaa agtggaaatt atccaagtta tttaaacact atgcttgata
    11761 ttgaaattca agaattaggc gagatagaaa ttcaaaccaa tgacacccac ttgcctcaaa
    11821 aagaaagctt tcaagcctta atggaatttg aaaaaattcc tttgcaggat atagaaagaa
    11881 aagaaaatac aagctcggat gaaatttatt ttggaaatgc ttttcacttt tttatgcaga
    11941 atttaaagct tccacaagga gaaaattttg acattctttg tcagaaggtg agtggtaaat
    12001 ttagacattt tttaaatcac gatgattttg aaaggctttt taaaaggata aaaaatttac
    12061 ttgctaatgc ccaatttcaa aaactcatcg aaaataaaaa attgctcaaa gagcaagctt
    12121 tgagttttca aggtgagatt aaacagcttg atttgcttgc tttaggcgag gatgaagcta
    12181 tcattataga ctataaaacg ggtttgaatt tcaacaagca taaagagcag gttttgcttt
    12241 ataaagaagc tatcgagaag attttggcta agaaatcaac tcaagctttt ttagtttatg
    12301 ttttagaaga taaggtggag ataatagaga tttaatagcg tatatcatca aatttaggct
    12361 cgattacaat ttttccactt ttatctatta aaccgtattt tccatttaac tctacttttg
    12421 ctaatccttc tctaaagctc caaatactat caaatttagg cttgattacg aatttcccac
    12481 ttttatctat taaaccaatt tttccattta acccaacact tgctaatcct tctctaaaat
    12541 cccaaatatc atcaaattta ggtttgattg caaattctcc atttttatct ataaagcccc
    12601 atttgccatt taaccctact gctgctaatc cttcgctaaa attcccaaca ccatcaaatt
    12661 taggctcgat tacaattttc ccatttttat ccataaaacc gtattttcta tttaactcaa
    12721 cttttgccaa tccttcgcta aaatcccaaa tactatcaaa tttaggcttg attacgaatt
    12781 tcccacttct atctataaaa ccccatcttc catttaactt aactcctgct aacccttcac
    12841 taaaatactc accataatca aatttaggct ttgctatgat tttgccactt ttatctataa
    12901 aaccgtattt tccatttaac ttaactttcg ctaatccttc gctaaaatcc caaatactat
    12961 caaatttagg cttgattacg aatttcccac ttttatctat taagccaatt tttccattta
    13021 atccaacttt tgctaatcct tcgctaaagc cccatgcctc atcaaattta ggcttgatta
    13081 cgaatttccc acttctatct ataaaacccc attttctatt taactcaact cttgccaatc
    13141 cttcgctaaa atcccaaata ctatcaaatt taggcttgat tacgaatttc ccacttctat
    13201 ctataaaacc ccatcttcca tttaacttaa ctcctgctaa cccttcacta aaatactcac
    13261 cactatcaaa tttaggctcg attacaattt ttccactttt atctataaaa ccgtattttc
    13321 catttaaccc aactcctgcc aatccttccc aaaagctcca aatatcatca aattcaggct
    13381 ttgctataat ttccccgttt ttatctaaga agctccactg tccatcgatt tttaccctta
    13441 ttaaatcacc gcttacaaag ataccagcaa aacaagcttt accatctcca tcatcgcatt
    13501 tttctttata gatagtttgg agcattttac agctacttgc atcatcgtag tggcattttc
    13561 cctcaagttt gcttatatag actctgctgt attttccacc ataaaaatac tgatatatgc
    13621 ttagcgaagc tatcaaaaag aaactcacca tgctaattat gattttgctt ttatgttttg
    13681 agataaattc ttttctttgt ttgagacttt tttctctttc ttcttgagct atttttcttt
    13741 tctcttcttc tagtcttctt aattcttctt gttttcttct ttcttgttct agtttttctt
    13801 ctgcttgcgg atcgtataaa tcactatttc cacactcttt gcagaattta gctacatcta
    13861 aattttttgt attgcaatga ttacaaataa gcattatgca ccccttgttt ctttgatgat
    13921 ttcataagct aaattgatct ttttcatcat ctcttgagct atttttaaaa gttcaggtgg
    13981 aagttctttg gagtggagat tgtcatagtg gtattctttg gctaattttc tataattttt
    14041 cttgatagtt tcaaaatcat ccttaggatg agaatttaaa atttcataag cttgttcgag
    14101 agtgattgta aatttgtctt cttttggttg ttcttgctgt gctttttcat gggtaaaatt
    14161 ataaatttgt tcatatttta gctttacttc tctaaatttt ataaggttta atccaagtcc
    14221 tacgatgata ttttccataa gagcattttc atttgcgctc atttttgcat cataatatat
    14281 caaatcaagc agtaaacata tgagaaaatc gatttctttc tcgtaaaatc ttgcactagt
    14341 gcaaagttca tggatacttc tgccttgatt tttttcatac tcaaaaatac ttgcataagt
    14401 atttctaaat ccactgtatt ctttagaata aaacatctct atcttatcga gtaaagaaga
    14461 tataaatttg gataaatctt ttgtgatgat tttatcatct gcttttgcaa cttttgccaa
    14521 aagcgctact atgatagcgg gatttttact gtaaatataa tcaagccttt gtcttgcggg
    14581 atgatttaac ccttttccac aaaatataca aaatttagca tcttcttcag ggtttatctt
    14641 aagacaattt ttacactgaa gatactcttg aattttaaat tttaaagaaa gcaaaataaa
    14701 accttatttt taatataata aaaagtaatt ttaacaagga tatg
//
LOCUS       DBBXRO010000032        14581 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.032, whole genome shotgun sequence.
ACCESSION   DBBXRO010000032 DBBXRO010000000
VERSION     DBBXRO010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14581
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.032"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(50..1927)
                     /gene="dxs"
                     /locus_tag="ACJFEZ_000732"
     CDS             complement(50..1927)
                     /gene="dxs"
                     /locus_tag="ACJFEZ_000732"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HGG0916868.1"
                     /translation="MNEIIKKDYQFAYTKEELEKLNLTQLEDLAARIRKKIIDVVSKN
                     GGHLSSNLGAVELTIAMHTVFDNGIDPLIFDVSHQSYTHKLLSGKENVFESLRQFGGL
                     SGYTKPNDGDYFVAGHSSTSISLAVGACKAIALKGEKRTPVALIGDGALSAGMAYEAL
                     NELGDSKFPCVVILNDNEMSISKPIGAISKYLSQAMATQFYQNFKKRVAKMLDALPDS
                     ATYMAKRFEESFKLITPGLLFEELGLEYIGPIDGHNLSEVISALKQAKAMQKPCIVHA
                     QTLKGKGYSLAEGKNAKWHGVSAFDVDSGESVKKSDTKKSATEIFSKNLLDLASKYEN
                     IVGVTAAMPSGTGLDKLIEKYPNRFWDVGIAEQHAVTSMAAMAKEGFKPFIAIYSTFL
                     QRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGAFDVSFLAPLPNLTLIAPRDE
                     LMMKNIMEYAYTHEGCLAFRYPRGSFILDEEFNPTKIELGKAQWLVKNQSNIAFLGYG
                     QGVGKAWKVLRKLQDEGQNANLIDLIFAKPLDKLLLKELAKQSQIWFVFSENARIGGV
                     ASLLESFVQENDLKIKIVSFEYEDSFIEHGKTNEVEKALKLDIDGLVQRVKINWVDNI
                     L"
     gene            complement(1920..2750)
                     /gene="fliH"
                     /locus_tag="ACJFEZ_000733"
     CDS             complement(1920..2750)
                     /gene="fliH"
                     /locus_tag="ACJFEZ_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HGG0916869.1"
                     /translation="MVNRSNVISGGTSDQHVVEGYRFKVISEFDNHAEEKQHSQISNE
                     ENITTSSKDESPVEESQTPAPSQVVQEVQTPAFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELESAKEKFSKEGYEQARAEFEKELNDLRDKYLKSVSKLEEACV
                     NLNAFIEKNEKELADTAIDIAKEVILKELENNSSKIAYALAKDLINELKGAGSIEIKV
                     NSIDYNYLKEHFSENSHIKITLDDAISKGSVIILSDSGNIESNLNARLIKIKKMVNNE
                     "
     gene            complement(2758..3786)
                     /gene="fliG"
                     /locus_tag="ACJFEZ_000734"
     CDS             complement(2758..3786)
                     /gene="fliG"
                     /locus_tag="ACJFEZ_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HGG0916870.1"
                     /translation="MIKLSEEQKMLYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIATAKNVDRAVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            complement(3786..5468)
                     /gene="fliF"
                     /locus_tag="ACJFEZ_000735"
     CDS             complement(3786..5468)
                     /gene="fliF"
                     /locus_tag="ACJFEZ_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HGG0916871.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSGANNGYAVLVDNVDPSSSAAIVAKLEQNNVPYILESESKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQSFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSG
                     VPLDEQEAYEDDLVRAQIKYKSDQERALEDKIIETLAPYAGGTDKVRVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKEPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVVRTSAAVTIDGKYQDVVDENGDVKSEYVPLSKEE
                     LASVESIVKNTINYSANRGDSVVVQNLPFHRESIRVESKVKTFYGRFIEPFIPPVKYI
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEVQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGENFNEDSIQYEVLLEKLRGLVSDKSEEIAALLQNLIQNDTEFGEKDM"
     gene            complement(5552..6646)
                     /gene="hisC"
                     /locus_tag="ACJFEZ_000736"
     CDS             complement(5552..6646)
                     /gene="hisC"
                     /locus_tag="ACJFEZ_000736"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HGG0916872.1"
                     /translation="MKFNDFLNHLSNYEPGKDIEVIAREYGVKEVIKLASNENPFGAP
                     PKAVKVLQENAFKANLYPDDSMVELKGELAQKYNVKNENIIIGAGSDQVIEFAIHSKL
                     NPQNAFLQAGVSFAMYEIYAKQCGAKCYKTQSITHDLSEFKTLYEAHKDEIEIIFLCL
                     PNNPLGECLDTNEVFEFIRGIDENCLVIIDAAYNEFASFKDQNKYLKPCDLVQEFKNV
                     LYLGTFSKLYGLGGLRIGYGIANAEIISAFYKLRAPFNVSNLALKAAVAALHDEEFAK
                     KTLENNFSQMELYKEFAKKHHIKFIESYTNFITYFFEEKNSTDLSEKLLKKGIIVRNL
                     KSYGLNAMRITIGTPYENERFFTEFEGILK"
     gene            complement(6633..7715)
                     /gene="pheA"
                     /locus_tag="ACJFEZ_000737"
     CDS             complement(6633..7715)
                     /gene="pheA"
                     /locus_tag="ACJFEZ_000737"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HGG0916873.1"
                     /translation="MPNLNLEDFRNKIDMVDDKILELLNERMSYVKSIGEIKQTSGGA
                     IYRPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQIVAYLGPEGTYTH
                     QAARSRFGAMSRYIALATIEDVFKELSNKEAKYGVVPIENNTEGAVGVTLDCLGKYNE
                     LKIFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSNIEFVPSKST
                     ANAAYLASQDKYSAAICSKIAAKLYNVPVLFDKIEDNAANRTRFLILSDIKNPKMPNC
                     KTSILAHTAHKPGGLSSLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDEN
                     VQRALKNADEVVWLGSYLSGEKNEIQ"
     gene            complement(7703..8470)
                     /locus_tag="ACJFEZ_000738"
     CDS             complement(7703..8470)
                     /locus_tag="ACJFEZ_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HGG0916874.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVLEILKDLKCQI"
     gene            complement(8472..9680)
                     /gene="lysA"
                     /locus_tag="ACJFEZ_000739"
     CDS             complement(8472..9680)
                     /gene="lysA"
                     /locus_tag="ACJFEZ_000739"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HGG0916875.1"
                     /translation="MDYKKLKDEFQTPFYIYDFDFIKERFLKLKNAFKARKSQIFYAV
                     KANSNLSLLQMLVKLDSGFDCVSIGEVKRALKAGAKSYKIIFSGVGKTQEELRLALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVNAKTHPYISTGLNENKFGVEI
                     DLARKMYLYAKNSPHLEPIGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIELKF
                     FDIGGGLGVRYEKEDVEPDLYDYAQGILAQLHGLDVTIGMEPGRFLVANSGEFVCSVL
                     YEKHNKTKRFVIVDGAMNDLIRPSLYEAYHEILLPYNQGEESPCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            complement(9722..10780)
                     /locus_tag="ACJFEZ_000740"
     CDS             complement(9722..10780)
                     /locus_tag="ACJFEZ_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HGG0916876.1"
                     /translation="MWIFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAAN
                     LSLLYVIFLAFSAVTYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFL
                     WALFFCFVYVGLNFTPFAYANDYKRNILKNGTMLKQSGEVFLKFNNEFIYISKVNNGQ
                     STAQNIKIFNIKDLNLSSFIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEF
                     KELNTLEGFKPKIIEGVASDSDYSILDILESLELFKTQNISIESLKISLYKLVFMPFF
                     APFLMLIMYYFFPVIARFFNLAFVAFVAFVVTLLTWGMLFLLSRLSENGVILSELGIV
                     MPIVLLIFLGGFMFYKHR"
     gene            complement(10782..11324)
                     /gene="pth"
                     /locus_tag="ACJFEZ_000741"
     CDS             complement(10782..11324)
                     /gene="pth"
                     /locus_tag="ACJFEZ_000741"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HGG0916877.1"
                     /translation="MILVVGLGNIGKEYEDTRHNVGFMLIDLLLKEGNFTNLTNSKFK
                     GELFKTGSSLLLKPHTYMNNSGLSVKAVNDFYKCERIIVVHDDIDINLGALRFKRGGS
                     SGGHNGLKSIDNLCGSDYERVRIGVGKGENVISHVLGKFRAEEELILSKVLEHSKKAL
                     LELIRNDDLSAISSKYSLKA"
     gene            complement(11321..11857)
                     /locus_tag="ACJFEZ_000742"
     CDS             complement(11321..11857)
                     /locus_tag="ACJFEZ_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HGG0916878.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            11991..12329
                     /locus_tag="ACJFEZ_000743"
     CDS             11991..12329
                     /locus_tag="ACJFEZ_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0916879.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            12332..12646
                     /locus_tag="ACJFEZ_000744"
     CDS             12332..12646
                     /locus_tag="ACJFEZ_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0916880.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            12656..13261
                     /locus_tag="ACJFEZ_000745"
     CDS             12656..13261
                     /locus_tag="ACJFEZ_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HGG0916881.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKSLDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(13248..14522)
                     /locus_tag="ACJFEZ_000746"
     CDS             complement(13248..14522)
                     /locus_tag="ACJFEZ_000746"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HGG0916882.1"
                     /translation="MNLKELDLKHIWHPCTQMKDHENLPLIPIKRAKGVWLYDFDDKA
                     YMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKVGRN
                     FNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDVALY
                     KDTYKPLLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNMHMY
                     QAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITGGFM
                     PLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILVKNQ
                     ILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFRKALEKGLLLRP
                     LANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
BASE COUNT         4676 a         2810 c         1998 g         5097 t
ORIGIN      
        1 ataagaagct atgaaatttt aaacattttt ttgttgtttt ggttcaaatt taaaggatgt
       61 tatcgaccca atttattttt accctttgca ccaaaccatc aatgtcaagt tttaaagctt
      121 tttccacttc attggttttg ccgtgctcaa taaaactatc ttcatattca aaagaaacaa
      181 ttttaatttt taaatcattc tcctgtacaa agctctctag caaactcgcc acaccaccta
      241 tccttgcatt ttcgctaaaa acaaaccaaa tttgactctg ttttgctaac tcttttaaaa
      301 gtagtttatc taagggttta gcaaaaatca aatcaatcaa attagcattt tgcccctcat
      361 cttgcaattt tcttaaaacc ttccaagcct tacccacccc ttgtccataa cctaaaaaag
      421 cgatattgct ttgatttttt acaagccatt gcgcctttcc aagttctatc ttggtagggt
      481 taaattcctc atctaaaata aaagatcctc taggataacg aaaagccaaa catccctcat
      541 gggtataagc atactccata atatttttca tcataagctc atctcttgga gctatgaggg
      601 ttaaattagg caagggagct aaaaaactta catcaaaagc tccttggtgg gtttctccat
      661 cttctcctac tatacctgcc ctatccatag caaaaaccac atttaaattc ataatcgcac
      721 aatcatggat aacttgatcg taagcgcgtt gtaaaaaagt gctgtatata gcaataaaag
      781 gtttaaatcc ttctttagcc atagccgcca tagaagtaac agcgtgctgc tcagcaatac
      841 ccacatccca aaaacgattt ggatattttt ctataagctt atcaagacct gttccacttg
      901 gcatagccgc cgtaactcca acaatatttt catattttga ggctaaatca agcaaattct
      961 tagaaaaaat ttcagtagca gattttttag tatcactttt tttaacactc tctccactat
     1021 ctacatcaaa agcactgacc ccatgccatt tagcattttt tccttcggct aaactataac
     1081 cttttccttt taaagtttgc gcatgaacaa tacaaggttt ttgcatagcc tttgcttgtt
     1141 ttaatgcaga aataacctca cttaaattat gtccatcaat aggtcctata tattcaagac
     1201 ccaattcttc aaataagagt cctggggtta ttaatttaaa gctttcttca aaacgcttag
     1261 ccatataagt agcagaatca ggtaatgcat ctaacatttt agccacgcgt tttttgaaat
     1321 tttgataaaa ctgcgttgcc atggcttgag agaggtattt tgaaattgca cctatgggtt
     1381 ttgaaatact catttcatta tcatttaaga taactacaca aggaaattta gaatctccta
     1441 attcattcaa ggcctcataa gccatacctg cacttagagc tccatcgcct atcaaagcta
     1501 caggagtgcg tttttcgcct tttagtgcta tggccttaca ggctcctaca gctaaagaaa
     1561 tagaagtact tgagtgtcct gctacaaaat aatccccatc attaggcttg gtatacccac
     1621 taagcccacc aaattgacgc aaagactcaa aaacattttc ttttccactt aaaagcttat
     1681 gtgtgtaaga ttgatgggat acatcaaata taagaggatc tatcccatta tcaaataccg
     1741 tgtgcatagc tatagtaagc tcaactgctc ccaaattgga gcttaaatgc cctccatttt
     1801 tacttactac atcaataatt ttttttctaa tgcgagccgc taaatcttca agctgggtta
     1861 aatttagctt ttctaactct tctttagtat aagcaaattg ataatctttt ttaattattt
     1921 cattcattat taaccatttt tttgatttta ataagacgcg cattcaaatt ggattctata
     1981 ttgccactat cgcttaaaat gataacacta cccttgctaa tagcatcatc aagagtgatt
     2041 ttaatatgag aattctcact aaaatgctct tttagataat tataatctat agaatttact
     2101 tttatttcaa tagaacctgc tcctttaagc tcattgatga gatctttagc taaagcataa
     2161 gcaattttgc ttgagttatt ttcaagctct tttaaaataa cctctttggc aatatctata
     2221 gctgtatcag caagttcttt ttcatttttt tcaataaaag cattaagatt tacacaagct
     2281 tcttctaact ttgaaacact ttttaaatac ttatcgcgca agtcatttaa ttctttttca
     2341 aattcagctc tagcctgttc ataaccctct ttagaaaatt tttccttagc gctttcaagc
     2401 tctgaattta agcggttatt aaactcattt tcttgacttt caatttgcat ttgaagctta
     2461 atgatattgc ttgacatttc atctgttttt ttaagcaaat cctcaacaaa actaggttga
     2521 aatgcaggag tttgcacctc ttgtactact tgagagggtg cgggggtttg actttcttcg
     2581 acaggacttt catcttttga agatgtagtt atattttctt catttgaaat ctgtgaatgc
     2641 tgcttctctt ctgcatggtt atcaaattct gaaattacct taaaacgata tccttcaaca
     2701 acatgttgat cagaagttcc tcctgaaata acattactac gattaaccat cactcaccta
     2761 ctctatcatt tcatcagcat cgcctgtttg tacaagtcct tgctctgcaa gtttttgcac
     2821 cacttcaacc acttttcttt gggcatcttc aacatcttta acacgcaccg cacctaaaaa
     2881 gcccatttct tcaaggaagg cttcacttgc acgcgtagac atattggcta agaatttttg
     2941 ctttaattct tcgcttgcac cctttaaacc tatcattaaa tcgcgcttat ctgcaacttt
     3001 taaaatttct cttatagctt gagtgctaag tttttgtata tcatcaaaag taaacatcaa
     3061 ttctttaatc gtttcagcca aacgttcatc gctttgttcg atgtaagtaa tggtagattt
     3121 gcttgctttt tgtcctaagc gattaagtac ttctgcaact gctcttgggc ctcccacttc
     3181 aaccttataa gaagtaagac tttcgagttt gctttcaagt actgcagaca ctcttttaat
     3241 gatacttgga gaaatatcac ctagatttgc cattcttata acaacctcag ctcttaactc
     3301 atcactaaaa tactctaagg tttcagctgc atgaattgaa tccatatgag ctaaaataag
     3361 tgcaatggtt tgcgggtgtt ccttagtgat gaagtcagca agttgttgag gtttaatctg
     3421 agccaaataa gcaaagtttt ggttattctc catacttttg gtaagttttt caagaatttt
     3481 attggcaatt tctggaccaa aagtacggaa aagtatttct ttagcgtatt ccaaaccacc
     3541 gcttttaatg tattgattag attgaagcag ggtataaaat tcttccaaaa ccgcagtagc
     3601 tacagcgcgg tcaacatttt ttgccgtagc aatatagcgt gaaatttcgg taataacatc
     3661 aatttccata tgtgaaaaaa ctgaagtcgt tgcatcctcg ccaagttgta tgagaaatat
     3721 cgctaccttt tcaggcatcg ataaatcatc ataaagcatt ttttgttctt cgctaagttt
     3781 tatcatcaca tatccttttc gccgaattcg gtatcatttt ggattaagtt ttgcaaaagt
     3841 gctgcaattt cttcgctttt atcacttact aagcctctta atttttcaag taaaacttca
     3901 tattggatag aatcctcatt gaaattctcc ccaaaaccaa gctgctcttc aacctttttc
     3961 ctagctgcat taaatttctc taacgcatcc tcagcatcat ctaaaacagc atttggacct
     4021 tgctgcactt cctcttgtgc tgcaacatct tcaagcattt tttgcgtaaa tggagcaata
     4081 acttttttgt aaaaaataaa aagcaaaata gccgcaataa tatatttaac cggtgggata
     4141 aatggctcga taaaacggcc atagaaagtt ttaaccttgc tttctactct aatagactca
     4201 cgatggaaag gtaaattctg cacgactaca ctatcccctc tattagcact ataattaata
     4261 gtatttttaa ctatgctttc tacacttgca agctcttctt tacttaaagg aacatattca
     4321 cttttcacat ccccattttc atccacaaca tcttgatatt ttccatctat tgttactgct
     4381 gctgaagtac gcacaacggt tgcaaattgt tttttggtat ttgtgatagt ttttgaaagc
     4441 tcattgtttg tagtaacttg atttttctta taggtatcaa tttgtccttt attatcaagt
     4501 ccttctactg gacctatatt tgaaaccgca cctggcacac cttgaatttc aggctctttt
     4561 ctgcctgttc tttcttcatt aagagtttgc tcacttcgaa ctatagggtt tggatcataa
     4621 atttcacttt gggattcttg cttagaaaag tcaaaatcta tattgacact tacccttact
     4681 ttatctgtgc ctcctgcata aggagctagg gtttctatga ttttatcttc taaagctctt
     4741 tcttgatcgc ttttatattt aatttgagca cgaaccaaat catcttcata agcttcttgc
     4801 tcatctaaag gcacaccact ttgatcacta attcttacat tttctttggt taatttcgga
     4861 atagcagctg aaactatatt tttaatccca tcgatttgtt ttctagtaag ttttaatccc
     4921 tcgcgcacat ttacaacgac tgaagctgta ggaggaattt gtctttcggt aaaaacactg
     4981 tcttttggaa aggctatatg cactaccgca ctgcgtatag gctctagggt ttcaatcgtt
     5041 cttgcaagct ctccttctat agctctttga tactttactc tttgttcttc atttgtagct
     5101 ccaaaacttt gcgtatcaaa agcttcaaaa cccacgcgac tatcttttat caatccttcg
     5161 ctagcgataa acattctttg acgatatacc tgatcttgtg gaactaaaat tttactttcg
     5221 ctttctagta tataaggtac attattttgt tcaagtttag ctacaatagc tgcagaagaa
     5281 cttggatcaa cattatcaac taaaacagca tagccattat tagcaccact gccacttcca
     5341 cgaaatagtg ccaaaaatac caaaaatcca acaaccacaa cgatagaagc tgcgataact
     5401 atacgttgct ttcgagtcaa attttgataa agctgtccaa tttggtgaag catattttta
     5461 aaatccatta attctcatcc cttagtttag tgaatcttac ccattttatt ctaaatacca
     5521 taaaaattat ccttgatttg aaaaatcaag actattttaa aattccttca aattctgtaa
     5581 aaaatctttc attttcataa ggcgttccta tggtaattct catagcattt aaaccataac
     5641 tttttaaatt tcttactatt ataccctttt taagcaattt ttcagacaaa tctgtgctat
     5701 ttttttcctc aaaaaaataa gtgataaaat ttgtatagct ttcgataaat ttaatatgat
     5761 gctttttggc aaattcctta taaagctcca tttgagaaaa attattttcc aaagtttttt
     5821 tagcaaattc ttcatcatgt aaagccgcaa ccgctgcttt taatgctaaa ttgcttacat
     5881 taaaaggggc acgaagttta taaaatgcac tgataatttc tgcatttgct ataccataac
     5941 ctatacgcaa cccacccaat ccataaagtt tagaaaaagt tcctaaataa agcacatttt
     6001 taaattcttg cacaagatca caaggcttta gatacttatt ttgatcctta aaacttgcaa
     6061 attcattata agctgcatca attatcacta aacaattctc atcaataccg cgtataaact
     6121 caaacacctc gtttgtatct aagcactcgc ccaaaggatt gttaggcaaa cataagaata
     6181 tgatctcaat ctcatcctta tgtgcttcat aaagtgtttt aaattcagat aaatcatgag
     6241 tgatactttg agttttatag cattttgcac cgcattgctt agcataaatt tcatacatag
     6301 caaagcttac ccctgcttgc aaaaaagcat tttgagggtt aagtttagaa tgtatagcaa
     6361 attcaataac ctgatcgctg cccgcaccaa tgatgatatt ttcatttttt acattgtatt
     6421 tttgtgctaa ctcacctttt agctctacca tactatcatc tggataaaga tttgctttaa
     6481 aagcattttc ttgcaaaact ttaaccgctt taggtggagc accaaaaggg ttttcattgc
     6541 ttgctaattt tatcacttct tttacgccat attctctagc gataacttca atatccttgc
     6601 ccggctcata attgcttaaa tgatttaaaa agtcattgaa tttcattctt ttctcctgat
     6661 aaataagatc caagccaaac tacctcatct gcgtttttca aagcgcgttg aacattttca
     6721 tcatcaatat gcccttcaaa atctatataa aaactatgta aaaattcttt tgattttacg
     6781 ggacgagatt cgagtttggt aagattgata ttttcttttt taaattgctc cagtaaagaa
     6841 ctaagaccgc caggcttatg tgcagtgtga gctaaaatag aagttttgca atttggcatt
     6901 tttggatttt taatatcact taaaatcaaa aatcttgtac gatttgccgc attatcttct
     6961 atcttatcaa aaagtacagg cacattgtaa agctttgcag ctattttaga acaaattgca
     7021 gccgagtact tatcttgaga ggctaaataa gcagcatttg ctgtagattt tgaaggcaca
     7081 aattctatat tgcttaattc gtggctttct aaaaatttgc gacattgatt ataaccttgt
     7141 gggtgggaat aaatgcgttt tatctctttt aaattttcat taattcctac aaaagaatga
     7201 tgaatatcca tataaatttc accaaaaatt ttaagctcat tatacttacc taagcaatct
     7261 aaagttacac ctacagcgcc ttctgtatta ttttctatag gaacaacgcc gtattttgct
     7321 tctttattgc taagctcttt aaaaacatcc tctatggttg caagtgcgat atagcgactc
     7381 atagcaccaa aacgacttct tgctgcttga tgagtataag taccttcagg ccccaaataa
     7441 gcaacaattt gaggcatttc taaattcctt gaaacagcaa aaatttcttg ataaattgcc
     7501 tctatggcat tttgatccaa aagtcctaaa tttgcatttt ttaagcgatt gataatcgct
     7561 ctttcacgtt caggacgata aatcgctcca ccacttgttt gcttgatctc tcctatgctt
     7621 ttaacatagc tcattctttc atttaaaagt tctaaaattt tatcatctac catatcgatt
     7681 ttatttctaa aatcttctaa gtttaaattt ggcatttcaa atcctttaaa atttctaaaa
     7741 cactaggata aactccatca agcaaatccg tatcaagccc ttttgtgtcg cttatctttc
     7801 cgcttaaaac cagcaaggtt ttcatgccaa gttcttttgc cttaagcaag tcacccctaa
     7861 aatcatcact aatgatttta atatcttcaa aatcgatttt tgaattttgt cttcttatta
     7921 aatttaaagc ttctttataa aaagcaatgc taggcttacc cacaacctca tattcaaaat
     7981 caatagcatt tttaagcata gccataatgc tacctacacc aggataaggc ctaccatctt
     8041 ttttataaat actagtttcg tgcatagcta taaatctaac ttctcttcta gccaattcta
     8101 tcatagtggc aaaatcttta aatttaaaat catcataact agccacaagc acagcactag
     8161 gatttacaaa atcgagctca aaaccaagat tttcaagact ttttacaaac tcatctgcac
     8221 caaaagccgc aactttacaa ggtcttaaaa ggtgttttaa aacgctgaaa ggatcaatat
     8281 aagcattttc ttttatagcc aatccttttt gctgtaattt ttctaaaaaa tcaagttttt
     8341 ttgtattgtt agtgatgata agataaggaa gattttttgc atttaaaaaa tcgatcagtt
     8401 ctttagcacc atggattaaa gatttatcat gatcagaaat taaagtccct tgaacatcta
     8461 aaaaaaacat tttaagcctt taaaaatttc tcttctaaag cgatttgatc ttcaaaattt
     8521 tctctttgac ggatcaatct tacctgtcct tcttcaaggg ctaattcgca aactttatta
     8581 cgagtattgt aattactgct catgctaaaa ccataagctc cagtattttt aataaccatt
     8641 atatcaccac tttgagtgct aggcaaagac cttgccttgg caaaaaaatc tccactttca
     8701 caaattccac ccacaacatc gcaaggactt tcttctcctt gattataagg cagtaaaatt
     8761 tcatgataag cttcatacaa acttgggcga attaaatcat tcatagcccc atctactata
     8821 acaaaacgct ttgttttatt gtgtttttca taaagcacag agcatacaaa ttctccacta
     8881 ttggcaacca aaaatcttcc tggctccatt cctatagtta catccagtcc gtgtagttga
     8941 gcaagtattc cttgtgcata atcataaaga tcaggctcta catcttcttt ttcatacctt
     9001 actccaagtc caccgcctat atcaaagaat ttaagctcta tttgcaaggc cttaagctct
     9061 cttactaatt ttgcaacaat cgcagccgct tcatggatag gcgagatatc taataattga
     9121 gaacctatat gaaaatgcac tccaataggc tctaaatggg gtgaattttt agcataaaga
     9181 tacatttttc ttgcaaggtc aatttctacg ccgaatttat tttcatttaa acctgtagaa
     9241 atataaggat gagttttagc atttacattt ggattgacac ggatacttat ccttgccttt
     9301 aaatttaact ctttagctac actttctaaa agcatcattt cagcttcgct ttcaagattg
     9361 atatataaaa tatcgtattc taaagcaagt cttaattctt cttgagtttt tcctacgcca
     9421 ctaaaaatta tcttataaga ttttgcacct gcttttaaag cgcgtttaac ctctcctatg
     9481 cttacacaat caaacccgct gtcaagcttt acaagcattt gtaaaagact taaatttgag
     9541 tttgctttta ccgcataaaa aatttgagat tttctagctt taaaagcatt tttaagcttt
     9601 aaaaaacgct ctttaataaa atcaaaatca taaatataaa aaggggtttg aaattcatct
     9661 ttgagttttt tataatccat ttttcacctt tatttttaat tttactatat taaagcttaa
     9721 tttatcggtg cttgtaaaac ataaaaccac ctaaaaaaat taacaaaaca ataggcataa
     9781 caatgcctaa ttcacttaaa atcacaccat tttcgctcaa tcttgatagt aaaaataaca
     9841 taccccaagt aagcaaagtg actacaaaag ctacaaaagc tacaaaagct aaattaaaaa
     9901 atcttgcaat aactgggaaa aaataataca taataagcat taaaaagggt gcaaaaaacg
     9961 gcataaatac aagcttataa agactaattt taagcgattc tatgctgata ttttgtgttt
    10021 taaaaagctc caaactttca agtatatcta agatagaata atcactatca ctagctaccc
    10081 cttcgatgat cttaggctta aaaccttcaa gagtattaag ctctttaaat tcgctgatat
    10141 ttaacccctt attgccaagc tcatattctt taggaagtag ggttaaattt ccttctttta
    10201 aaatccaatt tttcttttca aaaataccgc tcttagcttc gataaaagaa cttaaattta
    10261 aatccttaat attaaaaatt ttaatatttt gtgcggtact ttgtccatta ttaaccttag
    10321 aaatataaat aaattcgtta ttaaatttta aaaaaacttc accgctttgt tttagcatag
    10381 tgccattttt tagaatattt cttttataat catttgcata agcaaaagga gtaaaattta
    10441 accccacata cacaaaacaa aaaaataaag cccacaaaaa aggaaatatt atgaccaaat
    10501 ttttactaag ccctaaagca taaaggctta caaattcatt agcccttatc atagaaacca
    10561 aagaaagcac caaagcaaag attaaagaaa caggcaagac ataagtaaca gcagaaaaag
    10621 ccaaaaaaat cacataaagc aagctaagat ttgctgcatc gggtaaatca ttgaaattta
    10681 aaagcaaatc aataccacaa taaaaaccca gtaaagacag aaagataata aaaaaattct
    10741 taagataaat tcctgaaata aaacgaaaaa atatccacat cttaagcctt taagctatac
    10801 tttgaagata tggctgataa atcatcattg cggataagct caagtaaagc ttttttagaa
    10861 tgctctaaaa ccttacttaa aattaactct tcttcggctc taaatttacc taaaacatga
    10921 gaaataacat tctcaccctt gcccactcct atacgcactc tttcataatc acttccgcat
    10981 agattatcta tgcttttaag tccattatgt cctccgctag aaccgcctct tttaaaacgc
    11041 aaagcgccta aattgatatc gatatcatca tgaacgacta tgattctttc acatttgtaa
    11101 aaatcattta ccgcttttac gcttaatcca gaattattca tataagtatg aggtttaaga
    11161 agtaaagaag agcccgtttt gaaaagctct cctttgaatt ttgagtttgt gagatttgtg
    11221 aaattgcctt cttttaaaag caagtcaata agcataaagc cgacattatg gcgagtatct
    11281 tcatactctt tgcctatatt gccaagccct acgactaaga tcatctagct ttttctacgc
    11341 ccactaccgc tactctatca gcatctatca tagttactcc cgcaggaact acaatatcac
    11401 gaacaagtaa agcatcaccc acatcaagct tacttacatc aagttcgaag aaatttggta
    11461 aattttcagc tgcacatttt acttttaatc ttctttttga ttggattaaa acacctttat
    11521 ttttaagacc tatagctgtt cctgtgattt taactggaac catgtattta gaaatcacac
    11581 ctttttgtgc aacttttaaa tccacatgtt taagttctgc agttacagga tctttttgat
    11641 aatctacaac tacaacgctt aaagtttgag aacctacttt tacatcaaaa attaaagtag
    11701 tttttttacg aacttcctta ataaactcat ttactttaaa agcggcattg atgttttcta
    11761 atccttttcc atagatgttt gcgattagat aaccatctct ttttaaagct ttagcagctt
    11821 ttctaccgat actctctcta acgatgcctt ctaacatctt ttgtcctttc ttaaaaaatg
    11881 agctttgatt atatctaatt ttggcttatg gaaaagtaaa tttatagctt cttttaattt
    11941 ctttaagata taatttgttt tacaaatatt atgttaattt aaggcttcat gtgaatgaaa
    12001 aattcaatat taatatagct tggtttttaa taatcttagg tggaattata gaatgctttt
    12061 gggtaagtgg acttaaatat tctacagaaa tttggcacta tattttaaca gccattgggg
    12121 tttgtatttc ttttacttgc tttttaaaag cttgtgaaag acttgaagta agtattactt
    12181 atagtgtttt tgtaggcatc ggcactattg gggtggtttt aaatgaaatg tttattttta
    12241 acgaagctgt ttctataatt aaacttgtgc ttatagcaat tttactttta agtattatag
    12301 cccttaaatg ggtaagcaag gaagcttagt tatggaatgg ttttatttgt ttttagctac
    12361 tgcctgtgaa atttttggcg tggtgatcat gaaagaactt gtaagcacta aaaacaagct
    12421 ttacctttta gctttgatag tgtgttttgg attttctttt acttttttaa gcttaagtat
    12481 gcaaaatatc gctatgagcg ttgcttatgc tatatggaca ggagctggaa ccgctggtgg
    12541 ggtaatgata ggagtgcttt tttataaaga aagtaaaagt tttttgaaac tttttttaat
    12601 cgctgtgatt attacttgta cagcgggttt aaaatttctt tcttgaggat tttttgtgca
    12661 aatttatgta agtggaatac atactgatgt aggaaaaaca cattttagcg cagctttttg
    12721 tgcgaatttt aactatgatt attttaaact cattcaagca ggaactccaa cagatagtga
    12781 gtttattgca aaatttagcc caaaaacaaa gatttttaaa gaaggtattt ttttgcaaac
    12841 tccagcttct cctcatcttg gaaaaatcaa agaaaagctt gattataaat ccttagatat
    12901 cattttacca aaaagcaaaa acctacttat tgagcttgcg ggtgggcttt tttctcctat
    12961 ggatgaaaat tacactatga ttgattttgt gaatattttc aaacacccta cgattttggt
    13021 agcaaaatac tatcttggaa gtattaatca tatcttgctt agcattgaag ctttaaagca
    13081 aagaaatatc aatcttttgg cccttgtaat gatgggtaaa aaagatatct tacaagatga
    13141 ttttataaaa aattatgcaa aaattcctat aatcaatctt gatttttttg atgaaaatag
    13201 cattttaaat aaagatttta aagagcaaat gcaagaaatt ttacaactta aaattcctta
    13261 aaaatctgct ctaaactctc tagtacataa acgatttgtt cttttgtgat gatgtaagga
    13321 ggcataaaat aaatcgtatt tgctaaaggt cttaaaagca aacctttttc taaggccttc
    13381 ctaaatacaa aaagtcctac gcgtttatac ttggtgctta aaatatcaaa agcactgatc
    13441 atcccgcaag ttctaaaatt acccaaaaag tcaaattttt caagtcttga aaattctttt
    13501 ttgataaact cgcttaaaat ttgatttttt actaaaatat tttcatcctc aaagatatct
    13561 aaaaccgcat ttgctgccgc gcaagctaag gtatttcccg tatagctatg agaatgtaaa
    13621 aaagcctttt ggctttcata agtatcataa aaagcattat aaatttcatc tcttgtaaga
    13681 actacagaaa gtggcataaa tccacccgtt atcccttttg aaaggcagat aaaatcgggg
    13741 ctttgtttgc attgatgtaa ggcaaacaaa gttcctgtgc gtccaaagcc cactgcaatt
    13801 tcatcaaaaa tcacttgcac tccaaattta tggcaaagct ttatggcctc atcaataaac
    13861 cctgcttgat acatatgcat atttcctgca cattgcacca agggttcaag tataaaagca
    13921 caaatttcac ttgcattttt ttctaaaata tcttttaaaa tttcaagctc tttagtgtag
    13981 tctttgcctt gtggcacagg cgtgcttaaa cactctaaaa gtaaaggctt ataagtatct
    14041 ttataaagcg caacatcgcc cacacttaaa gcccctaagg tttcaccatg ataagaattg
    14101 cttaaagata aaaatttact ttttttcacc cccttattta aatgataatg aaaactcatc
    14161 ttaagtgcga cttcaatagc gcttgagcca ttatctgcat aaaaacattt gttaaaattc
    14221 ctgcctactt tttcgcaaag tcttgcagaa agcttgatga tgggctcatg tgtaaagcct
    14281 gctaagatca catgctctag ctcatcaact tgttttttaa tggcatttgc gattttttca
    14341 ttacaatgcc caaaaagatt tacccaccac gagctcacac agtccatata agccttatca
    14401 tcaaaatcat aaagccacac tcctttagct ctttttatag gaatgagtgg caaattttca
    14461 tgatctttca tttgcgtaca agggtgccaa atatgtttta agtctagttc ttttaaattc
    14521 attttcattt ctttattttt ttaatacaat aatactacaa tttttagtta aaatcataca
    14581 t
//
LOCUS       DBBXRO010000033        14338 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.033, whole genome shotgun sequence.
ACCESSION   DBBXRO010000033 DBBXRO010000000
VERSION     DBBXRO010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14338
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.033"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            7..1996
                     /locus_tag="ACJFEZ_000747"
                     /pseudo
     CDS             7..1996
                     /locus_tag="ACJFEZ_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798573.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
     gene            2283..3086
                     /locus_tag="ACJFEZ_000748"
     CDS             2283..3086
                     /locus_tag="ACJFEZ_000748"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HGG0916883.1"
                     /translation="MDNLHALILGIIEGLTEFLPISSTGHMILGTTILGIDINEFWKS
                     FLIIIQLGSILAVLFVFWRKLFKGLDIWFKLAVGFFPTGLIGFVLYKYLKELFNGYVV
                     VVMLILGGIVFIVIELAHKNKEYKTNSLEKVSFLQAFCIGIIQSLAMIPGTSRSGASI
                     IGGLLLGLNRKTAAEFSFLLAIPTMIVATAYSIYKEPELLSNANALIPLSIGFVTAFV
                     VAVFVIKFFLKFISKFDFIPFGIYRIVLGILFFYLYYSGILNSGSEFKL"
     gene            3218..5026
                     /gene="thrS"
                     /locus_tag="ACJFEZ_000749"
     CDS             3218..5026
                     /gene="thrS"
                     /locus_tag="ACJFEZ_000749"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HGG0916884.1"
                     /translation="MEKEVIAYLDDEKIVDSQSKNSTDLKEIYFDNSKQSLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVNSKIGEEDLVKIEKKMKELAEAKQE
                     IEKYEITKNEAIAKFKDDDLKQEVLLRIPDGKVSIYKQGEFEDLCRGPHVPNTKFLRN
                     FALTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEHLRIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPAKA
                     IGDDEIWDTATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPERFKLEYTDSNNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPISDSHIAYAKEIQRALLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDEEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            5023..5541
                     /gene="infC"
                     /locus_tag="ACJFEZ_000750"
     CDS             5023..5541
                     /gene="infC"
                     /locus_tag="ACJFEZ_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HGG0916885.1"
                     /translation="MSKEKEVLLNEEIRADEIRCIGDDGKAYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENDANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            5581..6684
                     /locus_tag="ACJFEZ_000751"
     CDS             5581..6684
                     /locus_tag="ACJFEZ_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HGG0916886.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLGFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLENYSKLINKCYLSNKDKNLTELLKHYHKILTQ
                     NLEFQAGFISELYAPKNEACIQKDERVFYTLKNALYLDTLRQKIEKEIPEELKHFFIA
                     PLIYEASVHSNTSGVFKGFYKGRDGVGKFGGEAQNALKRIKGDIELKMPIFSNFSCEF
                     EVVQKDANLLAKELENIDVAYLDPPYNQHPYSSNYFMLNLIANYQRPDEISKISGIPR
                     DWNRSIFNKEKQAEDALFELINDLKAKIILLSYNCEGFVKKEKFLKRLQSLGKCQILE
                     QKYPTFRASRNLKNRSIHIHEQLYILKKKYLIY"
     gene            6877..7905
                     /gene="argC"
                     /locus_tag="ACJFEZ_000752"
     CDS             6877..7905
                     /gene="argC"
                     /locus_tag="ACJFEZ_000752"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HGG0916887.1"
                     /translation="MRLKVGILGASGYAGNELVRILLNHPKVEISYIGSSSSVGQSYT
                     KLYPNTPLNLNFEDKNLDELELDVLFTATPHEFSAKLFSESLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLKNAVYGLCELYQEEIKNANLIANPGCYTTCSILSLYPLF
                     KEKMIDLNSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYGLASHRHTPEIEEHLSY
                     AAGEKITLQFTPHLVPMQRGILTTAYANLKHSVSEKEIREIYQKYYQDRKFIRLLPPQ
                     SFPQTRWVKSSNFADINFSIDERTNRIIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            7916..8362
                     /locus_tag="ACJFEZ_000753"
     CDS             7916..8362
                     /locus_tag="ACJFEZ_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HGG0916888.1"
                     /translation="MQVRAMQKSDYEGVYKLWCDIKGFGIRSIDDSKENIEKFLDRNP
                     NLSAVAVIDQEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKSEKI
                     NKIALIAFKSNDLGNEFWKHYGFTLREDANYYDLSLNSHNQTSFNV"
     gene            8372..9211
                     /gene="argB"
                     /locus_tag="ACJFEZ_000754"
     CDS             8372..9211
                     /gene="argB"
                     /locus_tag="ACJFEZ_000754"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HGG0916889.1"
                     /translation="MQKYLEKANVLIEALPYIRKFSSKIILIKYGGSAMENEELKHCV
                     MQDIALLKLVGLKPIIVHGGGKDISKMCEKLGVKSEFNNGLRVSDQATTEVASMVLNY
                     INKNLVHSLQNLGVKAIGLCGKDGGLLECVQKDENLGFVGEIQKVNSSVLQDLLEKDF
                     LPIIAPIGMDENFNTYNINADDAACAIAKALKAEKLAFLTDTAGLYENFEDKNSLISK
                     ISITQAKALVDKIQGGMHVKLKSCIDACESGVKKVHILDGRVKHSLLLEFFTDEGIGT
                     LVG"
     gene            9215..10405
                     /locus_tag="ACJFEZ_000755"
     CDS             9215..10405
                     /locus_tag="ACJFEZ_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HGG0916890.1"
                     /translation="MKMNYKEQSHIIPTYKRFDIVLESGEGVYLLDDKGKKYLDFSSG
                     IGVCALGYNHAEFNAKIKAQVDKLLHTSNLYYNENIAQAAKHLAKVSGLERVFFTNSG
                     AESIEGAMKVARKYAFNKGIKGGNFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDFSSVERLVNEKTCAIILESVQGEGGVNPAQKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHSGILPDVMTSAKALGCGLSVGAFVVSEKVAQKSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKKEKILENVSKLTPYLEQSLENLIKEFRFCKKRKGLGF
                     MQGLSLDKSVKVAEVIKKCQENSLLLISCGENDLRFLPPLIIEKSHIDEMSEKLRKVF
                     KSFE"
     gene            complement(10425..11054)
                     /locus_tag="ACJFEZ_000756"
     CDS             complement(10425..11054)
                     /locus_tag="ACJFEZ_000756"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HGG0916891.1"
                     /translation="MNAFEQKRCQSMAEEIAQKIFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALNFKDADSVLEIGCGSGYQAAILSKIIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFEDGQNGWKNYAPYDRILFSAYTTQLPEILL
                     DQLSDGGILVAPILHNGKQFITRITKNGTHLQKEILEECLFVPIVDGKE"
     gene            11173..11712
                     /locus_tag="ACJFEZ_000757"
     CDS             11173..11712
                     /locus_tag="ACJFEZ_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HGG0916892.1"
                     /translation="MLIRFKDKFPNLGQNVFVAEGAKIIGEVEIGDESSVWFNCVLRG
                     DVNFIKIGKRTNIQDLTTIHVWHREFNKDGSLKDAGFPTCIGDDVTIGHNCVIHACKI
                     GSRVLVGMNAVIMDDAAIGDDSIVGAGSVVTKGKKFPPKSLILGNPAKLIRELSDEEV
                     AFLKQSALNYVEFKNDFLD"
     gene            complement(11806..13194)
                     /locus_tag="ACJFEZ_000758"
     CDS             complement(11806..13194)
                     /locus_tag="ACJFEZ_000758"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HGG0916893.1"
                     /translation="MKKDSYTKPNNTLLCDFYELTMMQGYFLNGFENKIAYFDIFFRK
                     IPDHGSFAIFAGLEDILDFVSCLHFDEDDIAYLHSQGIFKEEFLRYLKNFKFKGEIYA
                     MQEGEIIFPNEPLMIIKANAIEAQILESFLLLSINHQSLIATKANRIVRAAKNLSVLE
                     FGTRRAHGSEAALKGARAAIIGGCKASSCTLAGKNYSIMTSGTMAHSWVQMFDDELSA
                     FCHYLELYPQNPTLLIDTYNYKQGLENAVKAFKKFKIKQCGVRIDSGNLEILSKEIRT
                     ILDKNDLKECKIIVSNSLDEKSINKLLKNDAPIDAFGVGEKLITASSDPIFGCVYKLV
                     AIEEDKLITPKIKISEDKQKITLPHFKKLFRIYDKNTQKMLFDELYIYNEKLPKLDEN
                     LERKELLKCVFKEGKILNKQKNVEEIALYAKSQISKLDEKFLNFNNKEKYKIKLSKDL
                     TKLRQNFTNTTL"
     gene            complement(13216..14238)
                     /locus_tag="ACJFEZ_000759"
     CDS             complement(13216..14238)
                     /locus_tag="ACJFEZ_000759"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HGG0916894.1"
                     /translation="MQRKRIYNPGSNETLTDRKVFSGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFNENNINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLVAINLDKIYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(14253..>14338)
                     /locus_tag="ACJFEZ_000760"
     CDS             complement(14253..>14338)
                     /locus_tag="ACJFEZ_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HGG0916895.1"
                     /translation="GLFISFLRKDKLNLHDILTQTCIVTKI"
BASE COUNT         4785 a         1961 c         2666 g         4926 t
ORIGIN      
        1 gggaatatgc aaaaaacata ctctttaccc gaactcacct tgcgcggttt gcttttggga
       61 agtattttaa ctattatttt tacagcttca aatgtatatt tggggttaaa agtgggactt
      121 gctttttcat catcaattcc agctgtagtc atctccatgg cagttttgag tctttttaag
      181 acttcaaata ttttagaaaa taatatggtt caaactcaag cttcagcagc aggaacttta
      241 tcatcagtta tttttgttat cccagggctt tttatgtgtg ggtattggag tgaatttcca
      301 ctttggcaaa cttttatgat atgtctttgt ggtggcggac ttggagtgct ttttaccata
      361 ccgttaagaa gggctatggt agttgaaagt aaacttgctt atcctgaagg tagggcagca
      421 gctgaaattt taaaagtagc taataaagat caaagtgata aaaaaggcaa acagggtgta
      481 aaagaaatag ccttaggctc ttttatagct gtttttttag tttgttaagc aatgttttaa
      541 acttgctgca agtgaaagca gtttggcttt tatttggaat aaaatggcct ttggtttttc
      601 agcaggatat tctttagcgc ttttaggagc aggatatttg gtaggtttag caggtgctat
      661 agcacttttt gtagggatgt ttttagcatg gggagttttt actccttatc tttcgagttt
      721 tgaatttgat ggtgtgaaaa atgctagtga acttgcttct agtgtttggg cggctaaagt
      781 tagacttatt agtactggag ctattgctat agcagcgctt tggaccttaa tagaactttt
      841 aaaaccagtg atttctggca ttaaagaaat tattaaaaat gttacaattt ctaatacaaa
      901 aagccaagaa agcaccgatt aagatctttc tttaaaaagc atttttatac tttttataat
      961 tatgactata ggacttttca ttacttttta tagttttgta tcggatgcaa atttaaataa
     1021 ttattatcaa attttatttg cctttgttgg aactttagtt tctgttttaa taggtttttt
     1081 tgttgcagca gcttgcggat atatggcagg acttgtagga tcttcttcta gtcctatttc
     1141 tggaatcggg cttattggga ttattgtttc atccttggtt attttacttt tgggtgcaaa
     1201 tttatttgat gatcctatgc tttctaaatt tgctatagcc ttggctattt ttactacaag
     1261 cgtaattgta gcaactgctg ctatttcaaa tgataattta caggatttaa aaacaggata
     1321 tttagtgggc gctacccctt ggaaacagca agttgctttg ctaataggtt gtgtttttgg
     1381 tgctttggct atagttcctg ttttaaattt actctatcaa gcttatggtt ttgttggagc
     1441 tatgccaaga gagggtatgg atctttcatc tgcgcttgca gctcctcagg caaatttaat
     1501 gagcactata gcacaaggaa tttttaatca caatatagag tggagttata tagcatttgg
     1561 agtagttgta ggtatattta tcattattat agataagata ctaagaaaaa atggcaattt
     1621 atccttacca cctttggctg tgggtattgg tatttatttg ccaccatctg taaatatccc
     1681 tttggtaatt ggtggaattt taaaatattt tgtgatgaga tatttagcaa acaaatatca
     1741 aaataattct cacaaaaatg aaaaaatagc aacccatgaa caaaaaggga ctttatttgc
     1801 ctcaggactc atcgtagggg aaagtatttt tggcgttatt atagctgcaa ttactgtttt
     1861 ttctgttagc atggacggaa gtgaaagtcc tttgaaatta agctttttaa atatacacaa
     1921 taatgaatta ttaggtttga tatttttcat aggagtcata ctttatttta tcaagcgtat
     1981 tgttaaaatt cattagaatt taaaacattc ataaagaaga attttaaatt ttttataaaa
     2041 ttcttcttag tttatttatc ttgtaacttt atttttaata tcttgatcca aagtataaaa
     2101 tgctccaata gtaaaaaatt gtattcttac ccaagccagt aaaatgagaa ataaaactca
     2161 aaattaatca gctttttcat acaaatagtt tatttttatc gtctgcttta agaaattgtt
     2221 tttatatttt tgtcgtgttt aaaaaaagtt tgtagaattc tttttttatt ttaaggaaaa
     2281 atatggataa tttacatgct ttaatactag gaatcattga gggtttgact gaatttttac
     2341 ccatttcttc tacaggacat atgattttag ggacgactat tttaggtatt gatattaatg
     2401 aattttggaa aagtttttta atcattatac aactaggatc gattttagca gtgctttttg
     2461 tgttttggcg taagcttttt aaaggacttg atatttggtt taaacttgca gttggttttt
     2521 ttcctacagg gcttatagga tttgtgcttt ataagtattt aaaagagctt tttaatggct
     2581 atgtagtagt tgtgatgctt attttaggtg gtattgtttt tattgttatt gaattagctc
     2641 ataaaaataa agaatacaaa accaattctt tagaaaaagt gagtttttta caagcttttt
     2701 gcataggtat tatccaatct ctagcaatga ttccaggtac ttcaagaagt ggagcaagta
     2761 ttataggtgg acttttatta ggacttaacc gcaaaacagc agctgaattt agctttttac
     2821 ttgctatccc tacgatgata gttgcaactg cttatagtat ttacaaagaa cctgaacttc
     2881 ttagcaacgc taatgcttta atccctttaa gtataggctt tgttacagct tttgtggtag
     2941 cggtttttgt gattaaattc tttttaaaat tcatttcaaa atttgatttt attccttttg
     3001 gaatttatag gatagtgttg ggaattttat ttttttattt gtattatagc ggaattttaa
     3061 attctgggag tgagtttaag ttataaacaa atattaaatt tattctaaga tttttttaaa
     3121 aataagctga atttcaaaaa aaattaagtc ttagaaagct aaaattagaa ctttataaac
     3181 actcacagag tcagtgagca aaataaggtt aaaagttatg gaaaaagaag ttattgcata
     3241 cttagatgat gaaaaaatag ttgattctca aagtaagaat tctactgatt taaaagaaat
     3301 ttattttgat aattctaaac aaagtttaga ggtgatacgc cattcttgtg cgcacttaat
     3361 ggcacaagca atcaaaagct tatatcctga agcgaaattt tttgtaggtc ctgtgataga
     3421 ggatggtttt tattatgatt ttcgtgtgaa ttctaaaatc ggcgaagaag atttagtaaa
     3481 aattgaaaaa aagatgaaag aattagccga agccaaacaa gaaatcgaaa aatatgaaat
     3541 cacaaaaaac gaagctattg ctaaatttaa agacgatgat ttaaaacaag aagttttact
     3601 ccgtattcct gatggaaaag taagtattta taaacaagga gaatttgaag atctttgtcg
     3661 tggtcctcat gtgcctaata ccaaattttt acgcaatttt gcacttacac gcgtcgcggg
     3721 agcttatctt ggtggtgatg aaaaaagaga aatgcttacg cgtatttatg gtactgcttt
     3781 tgcagataaa gagagtttaa aagagcattt aagaatcata gaagaagcta aaaaacgcga
     3841 tcatagaaaa ttaggaaccg aacttaaact ctttactttt gatgatgaga tagggggtgg
     3901 acttcctatt tggttgagta atggtgcaag acttagatct aaacttgaac atatgcttta
     3961 taaaattcat cgcttgcgtg gttatgagcc tgtgcgtggg cctgagcttt taaaagcaga
     4021 tgcatggaag attagcgggc attatgcaaa ctataaagaa aatatgtatt ttacacaaat
     4081 tgatgaacaa gaatatggca ttaagcctat gaactgtgtg gggcatatta aaatttatca
     4141 aagtgatgta agaagttatc gtgatttgcc tttgaaattt tttgaatatg gcgtggtaca
     4201 tagacatgaa aaaagtggcg ttttacacgg actttttagg gtaagagaat tcactcaaga
     4261 tgatgcgcat atcttttgta tgccaagtca aatcaaagag caagtgcttg aaattttagc
     4321 ctttgttgat aatttgatga aattatttga ctttagttat gagatggaaa tttcaaccaa
     4381 acctgctaaa gctataggcg atgatgaaat ttgggacaca gctactaaag ctttaaaaga
     4441 agccttagat gaacaaggct taaaatatgg cattgatgag ggtggaggtg ctttttatgg
     4501 gccaaaaatc gatattaaaa tcactgacgc tttaaaaaga aaatggcagt gtggtaccat
     4561 acaagtagat tttaatcttc ctgaacgctt taagctagaa tacacagata gtaacaatga
     4621 gaaaaagcag cctgtaatgt tgcatcgtgc gattttaggt tcttttgaaa gatttatagg
     4681 aattttaact gaacattgcg caggggagtt tccatttttt atcgcaccaa ccgcagtggg
     4741 tatagtgccg atttctgatt ctcatattgc ttatgcgaaa gaaattcaaa gagccttgct
     4801 agaattaaat atcgatagcg aagtatatga gaaaaatgag agcttaagta agaaaattcg
     4861 cactgctgaa aaacaaaaat tacctatgat tttagttttg ggcgatgaag aggtggcaaa
     4921 gcgaagcgtt gctttaagag atagaagagc taaagaacaa aaaaatctta gcttggacga
     4981 atttattaaa ttagttaagg agaaaatgag tgaggtacat ttttgagtaa agaaaaagaa
     5041 gtattgctca acgaagaaat tagagcggac gaaatcagat gtataggtga tgatggcaaa
     5101 gcatatggca ttatcagcag tgatgaagct ttagagattg caaatcgttt aggacttgat
     5161 cttgtaatga tagctgcaga tgcaaagcca cctgtttgta agattatgga ttatggaaaa
     5221 ttccgttatc agcaagaaaa aaagcaaaaa gaagcaaaga aaaaacaaaa agtaatcgat
     5281 attaaagaga ttaaactttc tgtgaaaatt gctcaaaatg atataaatta caaagtaaaa
     5341 catgctttag aatttttaga acaaggtaag catgtgagat ttcgtgtgtt cttaaaaggg
     5401 cgtgaaatgg cgactcctga agcaggtgta gctttgcttg aaaaaatttg gactatgata
     5461 gagaatgatg ctaatcgtga taaagagcca aattttgaag gacgctatgt taatatgctt
     5521 gtaactccaa aaaaagctta atctgttttt acagataagc tttttaaagg tttaaaaatt
     5581 ttgaaggaaa atccctcttt tttaaaagaa caaatcatta cttatttagg caataaaaga
     5641 gcacttttag gatttttaaa taagggcttt aaggtagcta aaaaagaact tggtaaagat
     5701 aaatttagtt tttgtgatat atttagtggc tcaggtgttg taagtcgttt tgcaaaagca
     5761 cactcaaatt atattttagc caatgattta gaaaattatt ccaaacttat caacaaatgt
     5821 tatctttcta ataaagataa aaatttaacc gagcttttaa aacattatca taaaatttta
     5881 acccaaaatt tagaatttca agcaggtttt ataagtgaac tctatgctcc aaagaatgag
     5941 gcttgcatcc aaaaagatga acgcgttttt tatactctta aaaatgcttt atatcttgat
     6001 actttaagac aaaaaatcga aaaggaaatt cctgaagagt taaagcattt ttttatagcg
     6061 cctttaatct atgaagcaag tgtgcattca aatactagtg gagtttttaa gggtttttat
     6121 aagggtagag atggagtggg taaatttggt ggagaggcgc aaaatgcctt aaagcgtatc
     6181 aaaggtgata tcgagcttaa aatgcctatt ttttcaaatt tttcttgtga atttgaagtg
     6241 gtgcaaaagg atgctaactt acttgcaaaa gagcttgaaa atatcgatgt ggcttatctt
     6301 gatcctcctt ataatcaaca cccttatagt tcgaattatt ttatgcttaa tttaatcgca
     6361 aattatcaaa ggcctgatga aatttcaaag atttctggta taccaagaga ttggaaccga
     6421 agtattttta ataaagaaaa acaagcagaa gatgctttgt ttgagcttat caatgattta
     6481 aaagccaaaa tcattttgct ttcttataat tgtgagggtt ttgtaaagaa agaaaaattt
     6541 ctaaagcgtt tgcaaagctt aggtaaatgt caaattttag agcaaaaata cccgaccttt
     6601 agagcctctc gcaatcttaa aaatcgttcc attcatatac acgaacaatt atacatactt
     6661 aaaaaaaaat atttaattta ttaatccatc aaaaggcatt aaaatctagt agcaaatctt
     6721 agcgtccatt gtctttgtat acaaaaagct tcgtgataat ttttgagata tatgagtatt
     6781 tttgtaagag tctatcaaat tttataaacc cataagtgtt attttaagca ttttttgtct
     6841 ataattaagc cgtttgaaat tcagtaagga ctaggaatga gattaaaagt aggaattttg
     6901 ggagcaagcg gatatgcagg taatgagctt gtgcgtatct tactgaatca tcctaaagta
     6961 gaaatttcct atataggttc tagttcaagt gtggggcaaa gctatacgaa gctttatccc
     7021 aacacgcctt taaatttaaa ttttgaagat aaaaatttag atgaacttga acttgatgtc
     7081 ttatttaccg ctactccgca tgaatttagt gctaaacttt ttagcgagtc tttattaaaa
     7141 aagatgaaaa tcatagattt aagcgctgat tttcgtctta aaaatcctaa agattatgag
     7201 ctttggtata aatttactca tcctaatcaa gagcttttaa aaaatgcagt ttatggactt
     7261 tgtgagcttt atcaagaaga gataaaaaat gcaaatttaa tcgcaaatcc tggttgctac
     7321 actacttgct ctatacttag tctttatccg ctttttaaag aaaagatgat tgatttaaat
     7381 tcggtgatta tcgatgcaaa aagtggagtc agcggcgcag gaagaagtgc aaaagtagaa
     7441 aatctttttt gtgaggtaaa tgaaaatatc aaggcttatg gattagcttc acaccgtcat
     7501 acccctgaaa tcgaagagca tttaagctat gcagcaggag agaaaatcac tttacaattt
     7561 acccctcatc tagtacctat gcaaagggga attttaacta ctgcttatgc aaatttaaaa
     7621 cattctgtaa gtgaaaaaga aattcgtgaa atttatcaaa aatattatca agacaggaaa
     7681 ttcataaggc ttttaccacc gcagtcgttt ccgcagactc ggtgggttaa atcaagcaat
     7741 tttgcggata taaatttcag catcgatgaa cgcacaaatc gtattattgt tttaggtgct
     7801 attgataatt taatcaaagg tgcagcagga caagctgttc aaaatatgaa tttaatgttt
     7861 gattttgatg aagatgaagg acttaaattc tttgcaaatt tgtaaaggat aaaaattgca
     7921 agttagagca atgcaaaaaa gtgattatga aggagtttac aagctttggt gtgatatcaa
     7981 aggttttgga attcgatcga ttgatgatag taaagaaaat atagaaaaat ttttagatag
     8041 aaacccaaac cttagcgcag tagctgtgat tgatcaagaa attgttggaa gtatactttg
     8101 tgggcatgat ggtcgcacag gaggttttta tcatgtgtgc gtgcataaag atcacagaaa
     8161 aaagggtata gcccatgaaa tgacaaaatt ttgccttgag gcattaaaat ctgagaagat
     8221 taacaagatc gcattgatag cctttaagag caatgatttg ggtaatgagt tttggaagca
     8281 ttatggtttt accttaagag aagatgcgaa ttattatgat ttatcgctca attctcacaa
     8341 tcaaactagt tttaatgttt gagggtaaat catgcaaaaa tatttagaaa aagcaaatgt
     8401 cttaatcgaa gctttgcctt atatacgcaa attcagctca aaaattatac ttataaaata
     8461 cggcggctca gctatggaaa atgaggagct taaacattgt gtgatgcaag atatagctct
     8521 tttaaagctt gtaggcttaa agcctattat cgttcatggt gggggtaaag atatctccaa
     8581 aatgtgcgaa aaattaggcg taaaaagtga gtttaataac ggacttaggg tgagtgatca
     8641 agccacaaca gaagtagcaa gtatggtgct aaattatatc aataaaaatt tagttcacag
     8701 cttgcaaaat ttaggtgtta aagctatagg gctttgtggc aaggatgggg gacttttaga
     8761 atgcgtgcaa aaggatgaga atttaggttt tgtaggcgag atacaaaagg taaattcaag
     8821 tgttttgcaa gatctcttag aaaaagattt tttacccatc atagctccta ttggaatgga
     8881 tgaaaatttc aatacttaca atatcaatgc cgatgatgca gcttgtgcta ttgccaaagc
     8941 tttaaaggcg gaaaaacttg ctttcttaac cgatactgca ggactttatg agaattttga
     9001 agataaaaat tctttaattt ctaaaatttc tataacccaa gcaaaagcct tggttgacaa
     9061 aattcaaggc ggtatgcatg taaaattaaa atcttgtata gatgcttgtg aaagtggagt
     9121 taagaaagtg catattttag atggacgcgt gaagcattct ttgttgcttg aattttttac
     9181 cgatgagggt attgggactt tagtgggtta aaggatgaaa atgaattata aagagcaaag
     9241 tcatattatc cctacttata agcgttttga tatagtttta gaaagcggag aaggggttta
     9301 ccttttagat gataagggta aaaaatatct tgatttttca agtggtatag gtgtatgtgc
     9361 tttaggatat aaccatgctg aatttaatgc taagattaaa gcccaagttg ataaactttt
     9421 acatactagc aatttatatt ataatgaaaa catagcccaa gcagccaagc atttagctaa
     9481 agtgagtggc ttagagcgtg tatttttcac aaattcagga gcagaaagta tagaaggagc
     9541 gatgaaagtc gctagaaaat atgcttttaa taaaggtatc aagggtggaa atttcatagc
     9601 ctttaaacat tcttttcatg gaagaacact aggagcttta tctttaaccg ctaatgaaaa
     9661 ataccaaaaa ccattcaagc ctttaatttc aggtgttaaa tttgcaaagt ataatgattt
     9721 ttcaagcgta gaacgcttag tcaatgaaaa aacttgcgct attatcttag aaagtgtgca
     9781 aggagaaggt ggtgtcaatc ctgctcaaaa agatttttac aaggctttaa gaaagctttg
     9841 cgatgaaaaa gatatattgt taatcgctga tgaaattcaa tgcggcatgg ggcgaagtgg
     9901 taaatttttt gcttacgagc attcaggaat tttacctgat gtaatgactt ctgctaaagc
     9961 tttgggatgt gggcttagtg tcggagcttt tgtagtgagc gaaaaagtag cacaaaaatc
    10021 cttagaagca ggcgatcatg gaagtactta tggaggaaat cctttagttt gtgcaggtgt
    10081 taatgcggtt tttgaaattt ttaagaaaga aaaaatttta gaaaatgttt ctaaacttac
    10141 gccttattta gagcaaagtt tggaaaatct tatcaaagaa ttcaggtttt gtaaaaaaag
    10201 aaaaggtttg ggttttatgc aagggcttag tcttgataaa agtgtaaaag tagctgaggt
    10261 gattaaaaaa tgtcaagaaa attctctttt gcttatcagt tgtggggaga atgatttgag
    10321 atttttaccc cctttaatca tagaaaaaag ccatatagat gaaatgagcg agaagctaag
    10381 aaaggttttt aaaagttttg aataaatttt ttattgataa aaatttattc ttttccatct
    10441 actatgggta caaaaagaca ttcttctaga atttcttttt gtaaatgagt accgtttttg
    10501 gttatgcgag tgataaattg tttgccattg tgcaaaatag gggctacaag tatgccccca
    10561 tcacttagct gatcgagtaa aatttcagga agttgtgtcg tataagcaga gaataaaatt
    10621 ctatcataag gcgcataatt tttccatcca ttttgtccat cttcaaattt aacattaata
    10681 ttaaaaagct cgagttctct aaaggtttgt gctgcttttt tggctaaatt ttctatgcgt
    10741 tctatggtaa aaacacgcct tataatcttg cttaaaatcg ctgcttgata accacttcca
    10801 cagcctattt ctaagacact gtccgcatct ttaaaattta aagccatagt cattttagcc
    10861 acggttaaag gagagctgat ccattgagaa ttagctaaag gtaaagcatc aagacgataa
    10921 gcatgggctt taagcgggga aaaaatttcg cgtggaattt gacaaaaagc attaaaaagt
    10981 tcttcgttga tgaatatttt ttgtgcgatt tcttcggcca tactttgaca tcgtttttgc
    11041 tcaaatgcgt tcattttttc tcctcgtaaa tgacaaattg taacgaataa agtttcaaaa
    11101 tttgattaaa aactaaaaaa tttgtttttc ttattgatat tttggttata ctaaaaataa
    11161 aaaaggatga aaatgcttat tcgatttaaa gataaatttc caaatttggg tcaaaatgtc
    11221 tttgttgcag agggtgctaa gattatagga gaagtagaga taggtgatga aagcagtgtg
    11281 tggtttaatt gtgttctaag aggcgatgtt aattttatta aaatcggtaa aagaacaaat
    11341 atacaagatt taactactat ccatgtgtgg catagagaat ttaataaaga tggaagttta
    11401 aaagatgcag gctttcctac ttgcatagga gatgatgtta ctatagggca taattgcgtg
    11461 atccatgctt gcaagatcgg ctctcgtgtg cttgtgggga tgaatgcagt gattatggat
    11521 gatgcagcta taggagatga tagtatagtg ggtgcaggta gtgtggtaac caaaggcaag
    11581 aaatttccac ccaaatcact catacttgga aaccctgcaa aacttatacg cgaactaagc
    11641 gatgaagaag tggcattttt aaaacaatct gctttaaatt atgttgaatt taaaaatgat
    11701 tttttggatt gatttaaaat tttaacaacg ctgtttttat gaaaaagctc aaatttatcc
    11761 attttaaata gacacatgga gcatttgagc tatatcgaca aaatttcata gagttgtgtt
    11821 tgtaaaattt tgtcttagct ttgttaaatc ttttgaaagt ttgattttat atttttcttt
    11881 gttgttaaaa ttaagaaatt tctcatccag ctttgaaatt tgactttttg catatagggc
    11941 aatttcttct acattttttt gtttattaag aattttaccc tctttaaaaa cacattttaa
    12001 aagttctttt ctttctaaat tttcatcaag tttaggtaat ttttcattat aaatataaag
    12061 ctcatcaaaa agcatttttt gagtgttttt gtcataaatt ctaaaaagtt ttttaaaatg
    12121 cggtagggtt attttttgtt tgtcttcgct gattttaatt ttaggcgtga tgagtttatc
    12181 ttcttctatg gcaacgagtt tataaacaca gccaaaaata ggatcacttg aagcagtgat
    12241 gagtttttcg cctaccccaa aagcatcaat aggtgcatca tttttaagca gtttgtttat
    12301 gcttttttca tctaaagaat ttgaaacgat gattttgcat tcttttaaat catttttatc
    12361 caagatagta cgaatttctt tgctaagtat ttctaaattt ccagaatcaa tacgcacacc
    12421 gcattgtttg attttaaatt ttttaaatgc tttgactgcg ttttctagcc cttgtttgta
    12481 attataagta tcgatgagta aggtaggatt ttgaggataa agttctaaat aatgacaaaa
    12541 agcactcaat tcatcatcaa acatttgcac ccaagaatgc gccatagttc cacttgtcat
    12601 aatgctataa tttttccctg caagtgtgca agagctagct ttgcaacctc ctattatggc
    12661 cgctcttgcc cctttgagtg ccgcctcgct tccatgagct cttcgcgtgc caaattcaag
    12721 cacgctaaga tttttagctg ctcttacgat acgattggct tttgtggcaa ttaggctttg
    12781 atgattgata cttaaaagta agaagctttc aagaatttgt gcttcaatag cattggcttt
    12841 gatgatcatc aagggttcgt taggaaagat gatttcgcct tcttgcatgg cataaatttc
    12901 gcccttaaat ttaaaatttt tcaaatatct taaaaattct tctttaaata tcccttgaga
    12961 gtgcaaatag gctatatcat cttcatcaaa atgcaaacaa gatacaaagt ctaaaatatc
    13021 ctcaagtcct gcaaatatag caaaagagcc gtgatcggga atttttctaa aaaatatatc
    13081 aaaataagct attttgtttt caaaaccatt tagaaaataa ccttgcatca tggttaattc
    13141 ataaaaatca caaagcaagg tgttatttgg ttttgtataa gaatcttttt tcataaaagt
    13201 taatttccaa gaaatttaaa aatcatcaaa gcttatacta cctttagaat agtttgtgac
    13261 cttactttca aagaaattgc ttttttgatc attaaattta gaaaaatcat ctacccattt
    13321 gatagggtgt tttgcattgt aaattttatc aagattgata gcaacaagtc tttgatctac
    13381 aagatagtgg atgtattctt ctataatatc gtctgtaaaa cccatgattt gattttgagt
    13441 aatgtatttg ccccatttga tttctaaatc gcccgctttt ttaaacatat cataaatttt
    13501 gttgatattg ttttcattaa acaaatcagg tctttcttta cgaactgaat tgatcatatt
    13561 ttgaaagagt aaaagatgag tgatttcatc tctttgaatg aaacgaatca tttgagcaga
    13621 accaagcatt ttacctgctc ttgcaagcgc gtaaatcgca gtaaatccac tataaaaata
    13681 tactccttct aaaatttgat ttgctaccat ggccaaaaga agtttattat catctacatc
    13741 gcccgctaat tcttcataga tacttgaaat aaaatcattt ttttcgcgca aggtttcatc
    13801 gtgcttttcc atttcataga ttaaatccgt attatcgcaa atggcttcaa ccattactgc
    13861 ataagatttt gaatggttag cttcttcata agcttggcgt gctaaaaccg cattgatttc
    13921 aggagcagtg atgtaaggat tgatattatc agctagattg ttggtttgaa agctatccat
    13981 agaaatgagc tgagaccaaa caagatcata cattcttttt tcacctgcag ttaaattaca
    14041 gcgataatct aatgcatctt tagtcgtatc tacttctttt ggaaaccaag tgtttgcttc
    14101 cattaaatcc cataatttta aagcccaagt gtattttgct tttgtaaaat ttaagattcc
    14161 atgaggattt ccgctaaaaa ctttacgatc tgttaatgtt tcatttgagc ctggattata
    14221 aattcttttt ctttgcattt tttacctttc tttcatatct ttgtgactat gcaagtttgg
    14281 gttagaatat catgtaaatt tagtttatct tttcttaaaa agcttataaa taaaccaa
//
LOCUS       DBBXRO010000034        14132 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.034, whole genome shotgun sequence.
ACCESSION   DBBXRO010000034 DBBXRO010000000
VERSION     DBBXRO010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14132
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.034"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            21..950
                     /locus_tag="ACJFEZ_000761"
     CDS             21..950
                     /locus_tag="ACJFEZ_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916896.1"
                     /translation="MNFKFFSIIVGILVVVILILSGTYYYLFEYSKPSYTPITQTSTE
                     QNQYSNNTHTTTQNSYVSDITNTNNENINLIQDKQDEKDANNIINDDNKSDTKSSQIT
                     KQNNEEKLAAIEKEISKQQKILEQEKIFKPQNTNNNKTNYQAKKLSPAQEYLSLGKNS
                     RLEPQLSTENMKVYVLDGKFLSDYRIKLLKDMLAIIEDNSKDYFLSVFVKMLPKGEMS
                     LTIYNKDIIFSDMKKSYKYISMDKISPYIKTPEVLNQYVAREEIIERFKLQTKKEGKG
                     SEFSKHINSLKTGLNKAQYFFPFCEIIEITSVK"
     gene            975..3587
                     /locus_tag="ACJFEZ_000762"
     CDS             975..3587
                     /locus_tag="ACJFEZ_000762"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HGG0916897.1"
                     /translation="MYDKSIEKTYYQICEERGYFEIDGNKAIQEKNKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKIWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLANAVKKAFVELY
                     DKKLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYYLKDSDEYLVVATTRPET
                     FFGDTAVMVHPDDERYKQFIGKELILPLSNKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLEFISVFDEKGILNEHCLEFRGLERLEARDKIVAKLDSLGFIDKIEEH
                     NNQVGYCYRCNNIVEPYISKQWFVKQEIAKESIEKVALGESKFYPSHWVNSFNAWMKD
                     LRAWCISRQLWWGHQIPVYYCECSHEWASQDTPKACPKCGGQNFKQDEDVLDTWFSSG
                     LWAISTLGWGNDTWGKDKIWFEEDLKEFYPNSLLITGFDILFFWVARMMFQSTNALGA
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNEEQFEDLEKIELKSALAQFVYSRFQDCVKNVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAQKESVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSKSELKTSASIMISKYPQFHAKNSNIEEIFSLIIESIVSIRRAKSLVDLG
                     NSKIEKAYIKLNDKKMQDEIKSYMKFITMLAKCENIEFTENKLQKAICDVSENLEIFI
                     TLNNVDLSGILTRLENQKTKLEKESTKLNAMLSNEKFIANAPKEVVEQNKEALANLKT
                     QLEKISAELANLKG"
     gene            3593..4603
                     /locus_tag="ACJFEZ_000763"
     CDS             3593..4603
                     /locus_tag="ACJFEZ_000763"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HGG0916898.1"
                     /translation="MIKIQNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLESYQEGSLKVLDAEIKDLSQNNPKKLRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRMHYSQCKIYSKLFGKEYMSEKDLNQKVNSLLDVVGLDHKNKAYPRELSGGQKQ
                     RVAIARALTLNPKILLSDEATSALDPNTTKNILELIAKINAEFGITVVLVTHEMDVVK
                     DVAQKALLLEHGQIIGSGAIDELFLKPNEKMKEFLGESDFLPSTGLNIKLYFPKEVAQ
                     NSIITHMARTLNIDFNIVWGKIEKLNGNALGNLVINIDEKDKSKVLNYIEQSGVLWEV
                     VS"
     gene            4600..5505
                     /locus_tag="ACJFEZ_000764"
     CDS             4600..5505
                     /locus_tag="ACJFEZ_000764"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HGG0916899.1"
                     /translation="MNEVSIFDAFLGRISQFFTEFSWQGIKEVSLNSISTFAQNYENI
                     LKPALNETIYMSLMAVFFGFILAIIPGILLAIWDKNGIKHNKIAYAVLDFITNLLRAF
                     PFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEVDHGIIEAAK
                     SYGASNTQIIFKVIFNESLPNIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYGYE
                     RFNKEIMIQTVVILLVLVQLVQILGNLFYTWAKNSKTLYILATLIALFVISIIININN
                     DESFVWQAIILIVLALCFIYKFLKK"
     gene            5699..6472
                     /locus_tag="ACJFEZ_000765"
     CDS             5699..6472
                     /locus_tag="ACJFEZ_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0916900.1"
                     /translation="MNIKNLIVASFLGLAVNLTAAETISIAATPVPHVEILEQVKPEL
                     EKQGYKLEIKEFTDYVLPNLAVDSGEVDANFFQHTPYLEEFNKNKGTKLTKVANVHIE
                     PMAVYSKKYKSLDDIKEGATIAIPNDPTNESRALDIIAKKGLVEFKEKALKTPLDITT
                     NPKKIKFVELKAAQLPRALNDVDFAVINSNYALSANLNPAQDGVFIEDKESPYANILV
                     VKTGNENDPKIQALAKALQSEKVKQFIIEKYKGSILPAF"
     gene            6527..7297
                     /locus_tag="ACJFEZ_000766"
     CDS             6527..7297
                     /locus_tag="ACJFEZ_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0916901.1"
                     /translation="MKLFKIILLFCLLNLSPIFAKTITIGATPNPFASLLEKVKDDFK
                     DKGYELKIIEFSDYILPNRALEEKELDANLYQHKPFLEEYNAQKGTNLTPTTPVVIAP
                     VGIYSKTIKDLKNLKKGARVAIPNDATNESRALELLEKAGLIELNQNTLKTPLDIKKN
                     PKNLKFIELKAAQLPRALDDVDIAVINSNFALGAGLNPIKDTIFREDKNSPYVNYVVV
                     RFEDKDNEKTKIIDEILRSDKFRNIIDEHYKDVLIPAF"
     gene            7307..8083
                     /locus_tag="ACJFEZ_000767"
     CDS             7307..8083
                     /locus_tag="ACJFEZ_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0916902.1"
                     /translation="MKFKKILLSVFCITSFLFGAEKSIIIGATPTPYAEILNFAKPIF
                     KERGWNLEVKEFSDYNIPNISLNEKDLDANLYQHKPFLEDFNAHKGTKLSSLGSIVLV
                     PMAIYSNDIKDIKNIPNGAKIAIPNDATNESRALDLLAKAGLIEFKTSSTLKTPINIS
                     KNPKNLKFIELKAAQLPRALNDVDLAVITTNYALGAGLNPLKDGIFIEDKDSLYAIVL
                     AVRQGDEKNEKSLILKEILTSDKIKNFINEQYKGSVIPTF"
     gene            8161..8823
                     /gene="flgA"
                     /locus_tag="ACJFEZ_000768"
     CDS             8161..8823
                     /gene="flgA"
                     /locus_tag="ACJFEZ_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HGG0916903.1"
                     /translation="MRIISFIFFVFIGLSHGANLEEIKTALAKEFKNNFPSLIIKNID
                     LKITTLPKDFEQYQFIRIANARFNQAQGFIRAEFKTPQNIQKNVFFRYFMQASLEVLK
                     SERSIQRGDKLGAFDYKSVLMDFDKVPSNALALEDTHNLIAKSNISKNTILKENMFKT
                     MALIRRNDPIIGVLSDGNVDVLIELTALHSADMGERIRAKNKEGKVMQGIVTGKNRMI
                     IQ"
     gene            8820..9383
                     /locus_tag="ACJFEZ_000769"
     CDS             8820..9383
                     /locus_tag="ACJFEZ_000769"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HGG0916904.1"
                     /translation="MKILLGISGSSSTHLGLKLLKNLENKCELYCIITEGAKISFEAE
                     NKKNLEKICQEQFQNICFLNDNNLSASVASGSFSIEKTIIAPCSISSLAKIHAGLADT
                     LLMRAAAVALKERKSLILGVREMPFSTLILEHMHKLSQLGVIIAPPIIASYSHASNLE
                     QMENFIIGKWLDLLGISHNLYERWQNF"
     gene            9423..9899
                     /gene="coaD"
                     /locus_tag="ACJFEZ_000770"
     CDS             9423..9899
                     /gene="coaD"
                     /locus_tag="ACJFEZ_000770"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HGG0916905.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDKVIVAIANSEHKKPCF
                     SLEQRKELAKLATSHLNNVEIITFDNLLVDLAKELKVNTIVRGLRAVSDFEYELQIGY
                     ANHALWEEIETIYLMPNLKNAFISSSIVRSIASHGGDISTLVPKEILPFLKDLPCM"
     gene            9890..10468
                     /gene="tmk"
                     /locus_tag="ACJFEZ_000771"
     CDS             9890..10468
                     /gene="tmk"
                     /locus_tag="ACJFEZ_000771"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HGG0916906.1"
                     /translation="MYVVFEGVDCVGKSTQISLLKECFKEAVFTAEPGGTKLGNHLRE
                     LLLYKPYQLDKKTELLLFLADRAQHCEEILKANQDKLIISDRSFISGMAYAKDFENEE
                     LFRLNAFALENFFPQKVIFLKGDENLIKERLSQKEQDAIEKRGIDYFLSVQDKLENTL
                     YFLKEKINLQVLTLNANDTKENLHQKIKDFLQ"
     gene            10465..11691
                     /gene="hisS"
                     /locus_tag="ACJFEZ_000772"
     CDS             10465..11691
                     /gene="hisS"
                     /locus_tag="ACJFEZ_000772"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HGG0916907.1"
                     /translation="MINALKGMKDLSDKDALYYEKIIKTCEEVAKNYGFNFINTPHLE
                     QSILFKRSVGESSDIVGKEMYEFTDKGGNEVCMRPEGTAGVVRAYIEKKLDKNISVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESFGIPSVYEDASIILMLVEIFSRLSIDFKLQ
                     LNSLGCSQCLPKYRDELVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEYCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIIAILEQKEELEKREGIYLCAMDEIYIP
                     KLLQIATKLRKKHKVILSYEARKLAKHLENGDKINSKHFLCMGENEAKSESLFYKNLE
                     NKDEKVIQISDLENAL"
     gene            11688..13523
                     /gene="speA"
                     /locus_tag="ACJFEZ_000773"
     CDS             11688..13523
                     /gene="speA"
                     /locus_tag="ACJFEZ_000773"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HGG0916908.1"
                     /translation="MMNYGIDIWGNDNFIIKNGKVCINHEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIESIYGSFNKARKEFNYKGKFNAVYPLKVNQYPGFVKNLVRLGK
                     DYNYGLEAGSKAELLLAMAYNNEDAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIVDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLVA
                     PVLELFSQEYTESKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKNNPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEATISVNEKGYEIEGIIEAQSILDALEDLDYD
                     IHTIMDILNERISNSKLVNEKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13524..>14132
                     /gene="cysE"
                     /locus_tag="ACJFEZ_000774"
     CDS             13524..>14132
                     /gene="cysE"
                     /locus_tag="ACJFEZ_000774"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HGG0916909.1"
                     /translation="MGFFGIIKEDFSQPKVQDPAYNSCIELFFNYPGVWAVVNYRFAH
                     FFYTKNFKRTARIISGISQFLTGVDLHPGATLGRRIFIDHANGVVIGQTAVIEDDVLI
                     YQGVTLGGTSLEKGIKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIVEERRKNKENTRAVDANCEDKLEKLERKIAELE"
BASE COUNT         5282 a         2058 c         2493 g         4299 t
ORIGIN      
        1 tatttgttaa ggaattaaag atgaatttta aatttttttc tattattgta gggattttag
       61 tcgttgtgat tttaatactt agcggaactt attactacct ttttgagtat tctaaaccta
      121 gctatacacc tataacacaa acttcaacag aacaaaacca atacagcaat aacacccata
      181 caacaaccca aaactcttat gtttctgata ttacaaatac aaataatgaa aatataaatt
      241 taatacaaga caagcaagat gaaaaggatg caaataacat cattaacgat gacaacaaaa
      301 gcgatacaaa atcttctcaa attacaaaac aaaacaatga agaaaaacta gcagcgattg
      361 aaaaagaaat cagtaaacag caaaaaattt tagaacaaga aaaaatattt aagcctcaaa
      421 atacaaataa caataaaaca aattatcaag ctaaaaaact aagcccagcg caagaatatt
      481 taagcttggg aaaaaatagt cgccttgaac ctcaactaag tacagaaaat atgaaagttt
      541 atgtgcttga tggtaaattc ttaagcgatt atagaatcaa gcttttaaaa gatatgttag
      601 cgattataga agataattct aaagactatt ttcttagtgt ttttgttaaa atgctgccta
      661 agggagaaat gagtttaact atttacaata aagatattat tttctctgat atgaaaaaat
      721 cttataaata tataagtatg gataaaattt caccttatat taaaacccct gaagtgctta
      781 atcaatatgt agcacgcgaa gaaattatag aaagatttaa gcttcaaact aaaaaagaag
      841 gaaaaggaag tgaattttct aagcatataa atagcttaaa aactggactt aacaaggctc
      901 aatacttttt tccattttgt gaaatcatag aaattacttc cgtaaaataa gccgcgtaaa
      961 aaaggtaaaa aataatgtat gataaaagca tagaaaaaac atattatcaa atttgcgaag
     1021 agcgtgggta ttttgaaatc gatggaaata aagccataca agaaaaaaat aaaaattttt
     1081 gtatcatgat gccaccgcct aatgtaacag gcgttttaca cataggccat gctttaacct
     1141 ttactttgca agatattatg acacgatata agagaatgga tggctataaa gttctttatc
     1201 aaccaggact tgaccatgca ggaattgcca ctcaaaatgt tgtagaaaaa caacttcttg
     1261 ctcaaggcat taaaaaagaa gaattgggtc gcgaaaaatt tatagaaaaa atttgggaat
     1321 ggaaagaaca aagcggtgga aaaatcctag atcaaatgag aactctagga attactcctg
     1381 cttggagccg cttgcgtttt actatggatg aaggcttagc aaatgctgta aaaaaagctt
     1441 ttgtggaact ttacgataaa aaacttatcg tgcgtggaaa ctatatgatc aattggtgca
     1501 ctcacgatgg agctttaagt gatatagaag tagaatacaa agaaaacaaa ggcaaacttt
     1561 atcatataaa atattattta aaagatagtg atgaatacct agtcgtagca acaacgcgtc
     1621 ctgagacttt ttttggtgat actgcagtca tggttcatcc tgatgatgag cgttataaac
     1681 aatttatagg aaaagaactg atcttgcctt tgagcaataa agccattaaa atcatagctg
     1741 atgaacatgt agaaaaagaa tttggaacag gggttgtaaa ggttacccct gctcatgata
     1801 tgaatgacta tgaagtagga cttagacata atttagaatt tataagtgtt tttgatgaaa
     1861 aaggaatttt aaacgagcat tgtttggaat ttagaggctt agaacgatta gaagctagag
     1921 ataaaattgt agctaaactg gatagtcttg gctttataga taaaatagaa gaacataaca
     1981 atcaagtagg atattgctat cgttgcaaca atatagtcga accttatatt tcaaaacaat
     2041 ggtttgtaaa gcaagaaatc gccaaagaaa gtatagaaaa agtagccctt ggcgagagta
     2101 aattttatcc aagccattgg gttaatagct ttaatgcttg gatgaaagat ttaagggctt
     2161 ggtgtatttc aagacaactt tggtggggac atcaaattcc tgtgtattat tgtgaatgct
     2221 cgcatgaatg ggcaagtcaa gatacaccaa aagcttgtcc aaaatgcgga gggcaaaatt
     2281 tcaaacaaga tgaagatgta ctcgatactt ggttttcttc gggactttgg gcaataagta
     2341 cacttggatg gggaaatgat acttggggaa aagataaaat ctggtttgaa gaagatttaa
     2401 aagaatttta tcctaattct ttattgataa ccggttttga tattttgttt ttctgggtag
     2461 ctagaatgat gtttcaaagt acaaatgctt taggggcttt accttttaaa gatatttatt
     2521 tacacgctct tgttaaagat gagcaaggta gaaaaatgag taagagtctt ggaaatgtta
     2581 ttgatccaaa tgaaagcatt aaagaatata gcgccgatat cttgcgtttc accttagcct
     2641 tgcttgctat acaaggacgc gatatcaagc ttagcaatga caaactttta caagttagaa
     2701 atttcacaaa taaaatctat aatgcgacaa attatctact tttaaatgaa gagcaatttg
     2761 aagacttaga aaagatagaa cttaaaagcg cattagctca atttgtttat tctagatttc
     2821 aagattgtgt aaaaaatgtg agagaaaatt tagacaatta tcgctttaat gatgctgcaa
     2881 acacacttta taaattcttc tgggatgatt tttgcgattg ggggatagaa cttagcaaag
     2941 ctcaaaaaga atcagtaaaa gaactaggaa gcattttcaa agaggcttta aaactcttaa
     3001 atccttttat gccatttatc agtgagtatc tgtatcacaa gcttagtaaa agtgaactta
     3061 aaacaagtgc ctccataatg ataagcaaat acccacaatt tcatgcaaaa aattccaata
     3121 tagaagaaat tttctctttg atcatagaaa gcattgttag catacgccgc gctaaaagcc
     3181 ttgtggattt aggaaattca aaaatagaaa aagcctatat taaattaaat gataaaaaaa
     3241 tgcaagatga aatcaaatcc tatatgaagt tcatcaccat gcttgccaaa tgcgaaaata
     3301 tagaatttac agaaaacaaa ctacaaaaag ccatttgcga tgtaagtgaa aatttagaaa
     3361 ttttcatcac gcttaataat gtagatttaa gcggtatttt aacaaggctt gaaaatcaaa
     3421 aaacaaagct agaaaaagaa agtaccaaac taaatgctat gttgtcaaat gaaaaattta
     3481 ttgccaatgc gcctaaagaa gtcgtagaac agaataaaga agctttggca aatttaaaaa
     3541 ctcagcttga aaaaatatca gctgaactag caaatttaaa aggttaaaaa ctttgataaa
     3601 aatacaaaat ttaaaaaaat attacggaaa agaactggtt attaatgatg tttccttgga
     3661 gataaaaaaa ggtgaaatct atgctatcgt aggacacagc ggtgctggaa aatctactct
     3721 tttaagatgt atcaatggac ttgaaagcta tcaagaagga agtttaaaag tgcttgatgc
     3781 tgaaataaaa gatctaagtc aaaataatcc taaaaagctt agaatgttaa gaaaagatat
     3841 aggtatgatt tttcaaaatt ttgccttaat ggaaagaaaa aatgtattcg aaaatgttgc
     3901 aatgccttta agaatgcatt atagccaatg caaaatttat tctaagcttt ttggcaaaga
     3961 atatatgagc gaaaaagatt taaatcaaaa agtcaattct ttgcttgatg ttgtagggct
     4021 tgatcataaa aacaaagcct accccagaga acttagtggg gggcaaaaac aacgcgtggc
     4081 cattgctaga gccttgactt taaatcctaa aattttactt agtgatgaag ccacttcagc
     4141 tcttgatcct aatacaacaa aaaatatttt agaactcatt gctaaaatca atgctgaatt
     4201 tggaataacc gtggttttag tcacacacga aatggatgtt gtaaaagatg ttgctcaaaa
     4261 agctttactt ttagaacatg gtcagattat aggaagtggc gcaattgatg agctcttttt
     4321 aaaacctaat gaaaaaatga aagaattttt gggcgaaagt gatttcttgc cttcaacagg
     4381 tttaaatatc aagctttact tcccaaaaga agtagcgcaa aatagtatta ttacgcatat
     4441 ggcaagaact cttaatatcg attttaatat tgtttggggt aaaattgaaa agcttaatgg
     4501 aaatgctttg ggaaatctag tgattaatat cgatgaaaag gataaaagta aagttcttaa
     4561 ttatatagaa caaagtgggg ttttatggga ggtagtatca tgaatgaagt gtctatattt
     4621 gatgcatttt tgggaagaat ttcgcaattt tttactgaat tttcttggca aggtatcaaa
     4681 gaggtatctc taaattccat cagcaccttt gcacaaaact atgaaaatat tttaaaacct
     4741 gctttaaatg aaactattta tatgagttta atggctgtat tttttggttt tattttagct
     4801 ataattcctg gaattttact tgctatttgg gataaaaatg gtatcaagca taataaaatc
     4861 gcttatgcgg ttttagattt tatcaccaat cttttaagag cttttccttt tcttatattg
     4921 attgttgtgc ttttacctct ttctaaaatt atagtgggca ctagtattgg cacaaatgca
     4981 gccatagttc ctttagctat aggtatagca ccttatttgg caaagatgtt agaaagtgct
     5041 tttaaggaag tagatcatgg cattatagaa gctgcaaaaa gctacggtgc aagcaatact
     5101 caaatcatct ttaaagtgat ttttaacgaa tccttgccaa atattattag cggtataact
     5161 ttgactttga tttttaccat aggtttttcg gcccttgcag gaactgtcgg tggtggcgga
     5221 cttggagatg tggcgattcg ctatggttat gaacgcttta ataaagaaat catgattcaa
     5281 acggtagtta tcttacttgt attggtgcaa ttggttcaaa ttttaggcaa tttattttac
     5341 acttgggcta aaaatagcaa aactttatac attcttgcta ctttaatagc cttatttgta
     5401 attagcataa tcatcaatat aaacaacgat gaaagttttg tttggcaagc aattatttta
     5461 atcgttcttg ctctgtgttt tatttataaa ttccttaaaa aataaaaaat taaatccggt
     5521 tttaatttaa atataagttt ttttaagtag aataagccaa aaaattttta aaaggattaa
     5581 cagatgatgc ctcagatgcg ctagtctgac tatcaagatt tctcataatg cttcttcctg
     5641 atagtcagag tgattaagat taaagcaagc acaaaaatga ctatataagg aaattaaaat
     5701 gaatatcaaa aatttaatcg tagcaagttt tttaggtttg gctgtaaatt taacagccgc
     5761 agaaactatc agtatcgcag caactccagt tcctcatgtt gaaatattag agcaggtaaa
     5821 acctgaacta gaaaaacaag gttataaact cgaaatcaaa gaatttacag attatgtttt
     5881 acctaatcta gccgtagaca gcggagaagt ggatgcaaat ttctttcagc acacacctta
     5941 tttagaagaa ttcaataaaa ataaaggtac caaactcacc aaagtagcta atgtgcatat
     6001 cgaacctatg gctgtttatt ctaaaaaata taaaagttta gatgatatca aagaaggtgc
     6061 tactatagct ataccaaatg acccaaccaa tgagagtaga gctttagata ttatcgcaaa
     6121 aaaaggtttg gtggaattta aagaaaaagc tcttaaaact ccacttgaca tcacaacaaa
     6181 tccaaagaaa ataaaatttg tagagcttaa agctgctcaa cttccaagag ctttaaatga
     6241 tgtggatttt gctgtaatta attctaacta tgcactttct gcgaatttaa atccagctca
     6301 agatggcgta tttatagaag ataaagaaag cccttatgca aacatccttg tagtaaaaac
     6361 aggaaatgaa aatgatccta aaatccaagc tttagcaaaa gctctacaaa gtgagaaagt
     6421 taaacaattt atcatcgaaa aatacaaagg ctcaattcta cctgcatttt aatccttgtc
     6481 ccttttttag ggactcttct ttttttaatc accaaaggag ttttttatga aattatttaa
     6541 aattatttta ttattttgct tactgaattt aagtcctata tttgccaaaa ccataaccat
     6601 aggagctaca ccaaatccct ttgcaagctt actagaaaaa gttaaagatg attttaaaga
     6661 taagggttat gaattaaaaa taatagaatt ttctgattat atactgccta atagagcctt
     6721 agaagaaaaa gaacttgacg caaatttata tcagcacaaa ccctttttag aagaatacaa
     6781 tgctcaaaaa ggcacaaatt taaccccaac aacgcctgtt gtcatcgcac cagtaggaat
     6841 ttatagcaaa acaattaaag atttaaagaa tcttaaaaaa ggtgctaggg ttgctatacc
     6901 taatgacgct acaaatgaga gtagagcttt ggagctttta gaaaaagctg gcttgattga
     6961 gttaaatcaa aatactctta aaaccccgtt agatataaag aaaaatccta aaaatcttaa
     7021 atttatagaa ctaaaagcag cacaactccc aagagcttta gatgatgtgg atattgctgt
     7081 gattaattct aattttgcgc ttggagctgg actgaatccg attaaagata ccatctttag
     7141 agaagataaa aatagccctt atgtaaatta tgttgtggtt cgttttgaag ataaagacaa
     7201 tgaaaaaact aaaatcatag atgaaatttt aagaagtgat aaatttagaa atattattga
     7261 tgagcactat aaagatgtac taatccctgc attttaagga gtttttatga aatttaaaaa
     7321 aatattactg agtgtttttt gcataacaag ttttctcttt ggagccgaaa agagtatcat
     7381 tataggagca acgcctactc cttatgctga aatcttaaat tttgcaaaac ctatttttaa
     7441 agaaagaggt tggaatcttg aagtaaaaga atttagtgat tataatatac ctaatatctc
     7501 gcttaatgaa aaagatttag atgcaaattt atatcaacac aaaccctttt tagaggattt
     7561 taacgctcac aaaggcacaa aattaagttc tttgggttct attgttttag ttcctatggc
     7621 tatttattct aatgatatta aagatattaa aaatatccca aatggtgcta aaattgctat
     7681 tccaaatgat gctaccaatg aaagtagagc tttggatttg cttgctaaag ctggtttgat
     7741 cgaatttaaa acttcaagca ctcttaaaac cccgattaat atcagtaaaa atcctaaaaa
     7801 tcttaaattt atagagctaa aagccgcaca acttccaaga gctttaaatg atgtagattt
     7861 agcagtcatt acgacaaatt atgcccttgg cgcaggactt aatcctctaa aagatggaat
     7921 ttttatagag gataaagaca gcttatatgc tatagttctg gcagtaagac aaggtgatga
     7981 aaaaaacgaa aaaagtctaa ttcttaaaga aattctaacc agtgataaaa taaaaaattt
     8041 catcaatgag caatacaaag gctctgttat acctactttt taatccaagc aaagccttta
     8101 aaggctttgt aaatttgtat tgggtaaaat ataaaagatt aataccatat taggctggca
     8161 atgagaatta tatcttttat tttttttgtt tttattggtt taagccatgg tgcaaattta
     8221 gaagagatta aaactgcact tgccaaagaa tttaaaaaca attttccaag tttaatcatt
     8281 aaaaatatcg atttaaaaat cactacttta cctaaagatt tcgaacaata tcaatttata
     8341 agaatagcca atgctcgttt taaccaagcg caaggattta taagggctga atttaaaacc
     8401 ccacaaaata tacaaaaaaa tgtatttttt cgttatttta tgcaagcaag tttagaagta
     8461 ttaaaaagtg agcgctctat acaaagagga gataaacttg gcgcttttga ctataaaagc
     8521 gtacttatgg actttgataa agttccctct aacgctctcg ctcttgaaga cactcacaat
     8581 ctcatagcaa aaagcaatat cagtaaaaat actattttaa aagaaaatat gtttaaaacc
     8641 atggctctta ttcgccgcaa tgaccctata ataggtgttt taagtgatgg aaatgttgat
     8701 gtattaatag aactcacagc cttacacagt gccgatatgg gagaaagaat tcgagcaaaa
     8761 aacaaagagg gtaaagtcat gcaaggtata gttacaggaa aaaataggat gattatacaa
     8821 tgaaaatttt attaggaatt tcaggatcta gtagtacgca tttaggactt aaacttttaa
     8881 aaaatttgga aaataaatgc gagctttatt gtattattac tgaaggtgca aagataagtt
     8941 ttgaagctga aaataagaaa aacttggaaa aaatttgtca agaacaattt caaaatatct
     9001 gttttttaaa tgataataac ctaagcgcaa gtgttgcaag cggatctttt agtatagaaa
     9061 aaaccatcat tgcaccctgc tctatctcga gccttgctaa aattcacgca ggattagccg
     9121 acacactttt gatgcgagct gctgccgtgg ctctaaaaga aagaaaaagt ttgattttag
     9181 gagtaagaga aatgcccttt tcaactttaa ttttagaaca tatgcacaag cttagtcaac
     9241 taggtgttat catcgcacct cctattatag cgagctattc tcatgctagt aatttagaac
     9301 aaatggaaaa ttttattata ggaaaatggc tagatctttt aggaatttct cataatttat
     9361 acgaaagatg gcagaatttt tagcttaaat ttgttatatt tttaaaaatt tttggagtaa
     9421 aaatgacttg tttatatcca gggacttttg accctattac aaatggacat ttagatgtga
     9481 ttaaaagagc gcttaaaatc tttgataaag tgattgtagc tatagcaaat agcgagcata
     9541 aaaagccttg ttttagctta gaacaaagaa aggagcttgc aaagcttgct acttcacatt
     9601 taaacaatgt agaaattatc acttttgata atctccttgt agatttagcc aaagagctca
     9661 aagtaaatac catagtaaga ggacttagag cagtaagtga ttttgaatac gaactacaaa
     9721 ttggctatgc taatcacgcc ctttgggaag agattgaaac catttaccta atgccaaatt
     9781 taaaaaatgc gtttatctca agttctatag ttagatctat tgcttcccat ggaggagata
     9841 tcagcacttt agtccctaaa gaaattttac cctttttaaa ggatttgcct tgtatgtagt
     9901 ttttgaaggg gtggattgtg ttggtaaaag tacgcaaatt tcacttttaa aagaatgttt
     9961 taaagaagcc gtttttactg cagagcctgg gggaaccaaa ctaggcaatc acctaagaga
    10021 gcttttactt tataaaccct atcaacttga caaaaaaacc gagcttttgc tttttttagc
    10081 tgatcgtgcg cagcactgtg aggaaatttt aaaagcaaat caagataaac tcattattag
    10141 cgatagaagt tttatttcag gcatggctta tgcaaaagat tttgaaaacg aagagctttt
    10201 tagacttaat gcctttgctt tagaaaattt cttcccgcaa aaagttattt ttttaaaagg
    10261 cgatgaaaat ttaatcaaag aacgtcttag ccaaaaagag caagatgcta tagaaaaacg
    10321 cggaattgat tatttcttaa gtgtccaaga taaacttgaa aatactcttt attttttaaa
    10381 agaaaaaata aatcttcaag ttttaaccct aaatgcaaat gatacaaaag aaaatttaca
    10441 ccaaaaaata aaggattttt tacaatgatt aatgctctaa aaggtatgaa agatttaagc
    10501 gataaagatg cgctatatta tgaaaaaatt atcaaaactt gcgaagaagt tgcaaaaaac
    10561 tacgggttta atttcatcaa tactccacat ttagagcaaa gcatactttt taaaagaagt
    10621 gtaggagaaa gttctgacat cgttggtaaa gaaatgtatg aatttacaga caaagggggc
    10681 aatgaagtct gtatgcgccc tgaaggcaca gcaggagtcg tgcgtgccta tatagaaaaa
    10741 aaattagata aaaacatcag cgtaaagcgt tggttttatc atggctctat gtttcgttat
    10801 gaaagacctc aaaagggtcg cttaagagaa tttcatcaat ttggagttga aagctttggt
    10861 atacctagcg tttatgaaga tgcgagtatt attttaatgc tagtagaaat tttctcacgc
    10921 cttagtattg atttcaaact tcaacttaat tctttaggct gctcacaatg cttgccaaaa
    10981 taccgcgatg agctcgttga attcttagat tctaaagaag gtttttgcga agattgtttg
    11041 cgtagaaaaa atttaaatcc tattcgcgtt ttggattgta aaaatgaata ttgtcaaaat
    11101 ttgcttgaaa atgctccact tttaatcaat aatttatgta cctcttgcca aaaagacttt
    11161 gaaacactac aacaaatttt aaaggataat ggagttaaat ttgagttaga ttcaaaactt
    11221 gtgaggggct tggattatta ttctaaaacg gcttttgaat ttataagcga tgaaatagga
    11281 gcaaaagccg ccattgcagg tggaggacgc tacgatagac ttatagagta tttaggtgga
    11341 aaaagtggct atggtatagg ttttgccatg ggtatagaaa gaattatagc cattttagaa
    11401 caaaaagaag agttagaaaa aagagaggga atttatcttt gtgctatgga tgaaatttat
    11461 atcccaaaac ttttgcaaat tgctaccaag cttagaaaaa aacacaaagt aatcttaagc
    11521 tatgaagcta gaaaacttgc caagcactta gaaaatggag ataagataaa ttcaaaacat
    11581 tttctttgca tgggggaaaa tgaagcaaaa agcgaaagtt tgttttataa aaatttagaa
    11641 aacaaagatg aaaaagtgat tcaaatttca gatttggaga atgctttatg atgaattatg
    11701 gaattgatat ctggggaaat gataatttta tcatcaaaaa tggtaaagtt tgtatcaatc
    11761 acgaaaaaaa acctgccatt atcgatatag taaaagagct aagagatgat ggatataaag
    11821 gccctttgct cttaagattt cctcatttga ttcaaaagca aattgaaagt atttatggaa
    11881 gttttaataa agcaagaaag gaatttaatt ataaaggaaa attcaatgcc gtttatcctt
    11941 taaaagtcaa tcaatatcct ggttttgtaa aaaatctcgt tcgtttaggc aaggattata
    12001 attacggtct tgaagcaggt tctaaggctg agcttttact tgccatggct tacaataacg
    12061 aagatgcgcc tattaccgta aatggattta aagatagaga gcttatcaat ataggcttta
    12121 tcgcagctga aatgggacac aatatcacct taaccataga aggactaaac gagcttgaag
    12181 ccattgttga tatagctaag gagcgcttta agcctaaacc caatataggc ttgcgtgtgc
    12241 gtttgcactc tgcaggtgta ggaatttggg caaaaagcgg ggggattaat tctaaatttg
    12301 gacttacctc tactgaactt atagaagctg taaatttact caaagaaaac aagcttttag
    12361 agcaatttac catgatacat tttcatcttg gttcgcaaat cactgaaatt catcctctta
    12421 aaaaagcctt aaatgaagca ggtaacatct ataccgagct tagaaaaatg ggggctaaaa
    12481 atttaaaagc tatcaatcta ggtggcggtt tagcagtgga atactcgcaa tttaaaaatg
    12541 aaaaaagtag aaattatacc ttaagagaat acgctaacga tgtggtattt atattgaaaa
    12601 atatagccga gcaaaaaaaa gatcttgagc ctgatatttt tatagagagc gggcgttttg
    12661 tcgcggccaa tcacgccgtt ttagtcgctc ctgttttaga gcttttctct caagaataca
    12721 cagaaagcaa gcttatacta aaaaagcaaa atccaaaact tatcgatgaa ctttacgatc
    12781 tttacaaaag cataaagcct tccaatgctt tagaatattt gcacgatagt atcgatcatt
    12841 tagaaagcat cttaacactt tttgacttag gttatgtgga tttgcaagat cgttctaatg
    12901 ctgaaatttt aacacattta atcacaaaaa aagccatttt gcttttaggt gataagcaaa
    12961 atcctgcgga tttacttgct atacaagatg aagtgcaaga aaggtatttg gtaaattttt
    13021 cactctttca aagcatacct gatttttggg gcttggagca aaatttccct atcatgccac
    13081 ttgatagact tgacgaagaa ccaacaagaa gcgcaagcat atgggatata acctgcgata
    13141 gcgatggcga aatttcgtat tctaaaaaca atcctttatt tttgcatgat gtagatgtag
    13201 aaaaagaaaa ttattttcta ggttttttcc ttgtaggagc ttatcaagaa gtgcttggaa
    13261 tgaagcacaa tctttttacc catcctaccg aagcaacgat aagtgtcaat gaaaaaggct
    13321 atgaaatcga agggattata gaagctcaat ccatacttga tgctttagaa gatctagact
    13381 atgatataca tacgattatg gatatactta atgaacgcat tagcaattct aagcttgtca
    13441 atgaaaagca gaaaaaacac attttaggcg aactttatct tttcttaaat gataatggct
    13501 atttaaaaag cataggagta taaatgggat ttttcggcat tataaaagaa gatttttccc
    13561 aaccaaaagt acaagatcca gcatataatt cttgtataga actttttttc aattacccag
    13621 gcgtatgggc ggtagtaaat taccgctttg cacatttttt ttatacaaaa aatttcaagc
    13681 gcaccgctag gataatcagc ggaatttcac aatttttaac aggcgtagat ctacatccgg
    13741 gtgcaacttt aggcagacgc atttttatag atcatgctaa tggagtggtg ataggacaaa
    13801 ccgcggtcat agaagatgat gttttaatct atcaaggcgt aaccttaggc ggaaccagcc
    13861 ttgaaaaggg tattaaacgc catcctacca tcaaaaaagg agtgattata ggctcaggcg
    13921 caaaagtact tggtaatatc actataggag aaaatgccaa aataggctcc aatgccgttg
    13981 ttgttaaaga tgtaggagca aatttaaccg cagtaggaat tcctgcttat atagtagaag
    14041 agcgtcgtaa aaacaaggaa aacacaaggg ctgttgatgc aaactgcgaa gacaagctcg
    14101 aaaagctaga gagaaaaatt gcagaacttg aa
//
LOCUS       DBBXRO010000035        14058 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.035, whole genome shotgun sequence.
ACCESSION   DBBXRO010000035 DBBXRO010000000
VERSION     DBBXRO010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14058
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.035"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            5..2107
                     /gene="topA"
                     /locus_tag="ACJFEZ_000775"
     CDS             5..2107
                     /gene="topA"
                     /locus_tag="ACJFEZ_000775"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HGG0916910.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKEYEVIASKGHIRDLPKSSFGI
                     KIENDEFIPEYRITSDHSVLVKELKEKAKGAKEIYLATDEDREGEAIAYHIAKAIGKD
                     ENVLPRIVFHEITKNAIENALKNPRKLDMNSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLNAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPTKANVY
                     TTKAKGAQEAHEAIRPTNLNFTPEIAAKFLDKDELKLYTLIYNRFLACQMNPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGENLKIQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVKIDKKQLIPSEVAFSVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKANWQETLKEFYYPFMRKVEEGKTKIASQKTV
                     TKLGENCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKNESKNEAEVSASKAKAKG
                     IGITCPSCKEGEIVERLSKRGKFYGCSAYPKCNFISKYKPSDEKCEECGENLVIKELK
                     KGTFLECLKCKIKKEIKD"
     gene            2110..2946
                     /locus_tag="ACJFEZ_000776"
     CDS             2110..2946
                     /locus_tag="ACJFEZ_000776"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HGG0916911.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAYVKTNIQKYRQKEISQI
                     VLEAKIAKKNEALGFCLVTAGLGLDDEKLEYVCKAAHAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLEASKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPKLSADEALKIISDTKEALPN
                     TVVMVAGGREVVLQERQYEIFKAGAGAIVIGDYLTTKGEEPSRDIVKLKEMGFTFASE
                     CH"
     gene            2927..4102
                     /locus_tag="ACJFEZ_000777"
     CDS             2927..4102
                     /locus_tag="ACJFEZ_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HGG0916912.1"
                     /translation="MHPSVIDSQGLIDLQILIVIALCLLFSPHIAKILRLPISATEII
                     LGALMAYFGFIGKSENFTILANVGFYYLMFIAGMEVNLRAFFNMDKEIAKKSFFYIIL
                     LYSFSSAIVWVFELSFVFVLIIPVMSVGLLSLLYKDFGKECYWLNTAMIVATLAEVVS
                     IVLLTIAGAFLREGTNIIDVVQSILYLNIFLGLCLLGFKVLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMIITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSSFG
                     HGFLIPIFFIHIGTTFDLKMILEYEIVFDAILLMFVMVGLRILCASVFWKKIGFQNMV
                     LFGLSHSMPLTLLIATATLGYSGKVISEELYSALILTALFEAIVVMSAIKFISNIKK"
     gene            4232..5500
                     /locus_tag="ACJFEZ_000778"
     CDS             4232..5500
                     /locus_tag="ACJFEZ_000778"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HGG0916913.1"
                     /translation="MSNSVTVTDNRNGKSYEFPIYDGTTGPSVVDMGSFYKQTGMFAY
                     DEGLTSTATCKSKITYIDGEEGVLMHRGYPIEWLAENKLFLDVVHLLLYKELPSNERL
                     EAFRYELKKRSYIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVREEYM
                     EMAARVVAKIPTIVAAAYRYKNGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACISAGIGALWGHAHGGANEGVIRM
                     LEEIATVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALQDDYFVQRNLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQETLKIVRPRQLYLGETSKI"
     gene            5574..6338
                     /locus_tag="ACJFEZ_000779"
     CDS             5574..6338
                     /locus_tag="ACJFEZ_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HGG0916914.1"
                     /translation="MFKLDNLLKTAIDASNEASKAILKERKNLQIWQKQDQSPLTSAD
                     LASNEILNDILGKTDIKILSEEGLLSQEESKNLQSYWLIDPLDGTSGFLKGSDEFCIM
                     ISLIHEDRPILALIKNPSKGDIFYAHQNTRVYKNDKILDISEQDFIDNQSKALLSVNH
                     LSKEDENFAKKHNLTPINIGSGLKFCAILEGRAGVYKRFEKLNSWDIAAGDFLVNQKG
                     GFMGTFSKEMILYSPLNYKCEPFICVSKKSFLNIYT"
     gene            6375..7136
                     /locus_tag="ACJFEZ_000780"
     CDS             6375..7136
                     /locus_tag="ACJFEZ_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916915.1"
                     /translation="MKIFLILFMSILLNSSLFANNFSQKKIIKLEQQESFEIIDLQQN
                     VEKQNLDQQKGIFDSSSLMSKKESIRKDNDVDFAIAMSFRQNFGYALDGFNISAKEFS
                     TLFAKNLVDNLRLNFVNSAANGVYQDLRTLARFSPKDSKLLNVSPFLKKEKDKSQIYA
                     KFTDYLVVVNLDDFYVNITNYFVAITKNAVANINFKVVSTSNGKILTSKNVRLNFALH
                     TQDPRVNYQELVNQMPNMLAEVINKELEKLNLTVQ"
     gene            complement(7141..7314)
                     /locus_tag="ACJFEZ_000781"
     CDS             complement(7141..7314)
                     /locus_tag="ACJFEZ_000781"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916916.1"
                     /translation="MQININLEEMTKWQITYELKRILSSLDPITAHEIAKELRQEFLS
                     IEELQDRIRQIND"
     gene            complement(7423..8199)
                     /locus_tag="ACJFEZ_000782"
     CDS             complement(7423..8199)
                     /locus_tag="ACJFEZ_000782"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HGG0916917.1"
                     /translation="MIIDFKKYSSVKIGGEFEVEVLEQIREFDGFLIGGANNLLISPK
                     PKNIGILSDNFNFIEILEQNKDFLHLRIGCKTKASQMYRFSKENNLYGFEYLSKIPGT
                     LGGLLKMNAGLKDECISQNLVKIATSKGEILRENIDFSYRFCPLNMPFFWAEFKLGFG
                     FDKIKDENLKNARNNQPSGASFGSIFKNPKGDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFDDAIFLIELAKKKVFEEFGIKLEEEVIII"
     gene            complement(8196..8465)
                     /gene="fliQ"
                     /locus_tag="ACJFEZ_000783"
     CDS             complement(8196..8465)
                     /gene="fliQ"
                     /locus_tag="ACJFEZ_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HGG0916918.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLIISIFQATTQI
                     NEMTLSFVPKIILVVIVIIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            complement(8477..9340)
                     /locus_tag="ACJFEZ_000784"
     CDS             complement(8477..9340)
                     /locus_tag="ACJFEZ_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HGG0916919.1"
                     /translation="MKKTITIAHSPDADDIFMYMAIKLGWIGNDFDYKNTALDIQTLN
                     DLALKNEFDATAISFGLYPLIAKEYALLRTAVSFGEGYGPKLIKKQNTHLKRNFKVAL
                     SGANTTNALIFRMKYPEARIIYKNFLEIENAVLSGEVDAGVLIHESILEFDSSLCVEA
                     EIWDIWLELAQENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIANSNRRILAPMLM
                     ERNLIRVNEEKLDTYLNLYANKNSICMSETQFKAVDVLFKLGYDYKFYDKIIHAKDYL
                     IPSEYEEFRNS"
     gene            9450..10481
                     /gene="recA"
                     /locus_tag="ACJFEZ_000785"
     CDS             9450..10481
                     /gene="recA"
                     /locus_tag="ACJFEZ_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HGG0916920.1"
                     /translation="MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKEIQNSMGIEGMIS
                     SSEDEEGEE"
     gene            10481..11725
                     /gene="eno"
                     /locus_tag="ACJFEZ_000786"
     CDS             10481..11725
                     /gene="eno"
                     /locus_tag="ACJFEZ_000786"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HGG0916921.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVVLSDGSMGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAANALGVPLYRYLGGANASILPVPMCNIINGGAHASNNID
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANLGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKEGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDVFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            11791..11994
                     /locus_tag="ACJFEZ_000787"
     CDS             11791..11994
                     /locus_tag="ACJFEZ_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916922.1"
                     /translation="MVFWAFLVIIGAIYFGNMLFGQYSLDTLLSLEATKEELNKKISF
                     LKEQNAKAQKDYFELQGLYPNEN"
     gene            11984..12646
                     /locus_tag="ACJFEZ_000788"
     CDS             11984..12646
                     /locus_tag="ACJFEZ_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HGG0916923.1"
                     /translation="MKTKILGIFLIFISLLNAEENPFKSEQNMSMIMPPDFQKEDIKF
                     NSNARVLKSVSFNYINLDGSEEVLNVDINKSIDWHDTYTLVRTKSPDPSKVFDVSVTI
                     PERNDSKKESNGTANIEIPLQVDKIYDFISYAVYKNKIKLNTSDELISDFSIGNPSKI
                     VVDFKSDLVNPTKNIRISNSLFKRIDFGSHKGYYRLVIYLDGNYNYNIQKDATGYMIN
                     LL"
     gene            12646..13485
                     /locus_tag="ACJFEZ_000789"
     CDS             12646..13485
                     /locus_tag="ACJFEZ_000789"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HGG0916924.1"
                     /translation="MRIFVFLWCVSFAFASDILLLSKISEQEIQNKNFNGYLMSEKLD
                     GVRGIWEVGKFKTRQDNPIYTPSYFTYNFPSFKLDGELWIARAKFDEVSALIRGDNLD
                     SSLWKSVTYNVFDVPNACEEFKLTSCTLSNRLKVLEQYLQQNPNPYIKIIKQIPIKDQ
                     EHLKEFYKDIVLNKGEGVVIRKDLAPYEKGRSKNAFKLKPYEDAECKVIGYTEGKGKF
                     QGKIGALLCQMPNDRVIRIGSGLKDKDRENPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRD"
     gene            13532..13609
                     /locus_tag="ACJFEZ_000790"
     tRNA            13532..13609
                     /locus_tag="ACJFEZ_000790"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13567..13569,aa:Pro,seq:tgg)
     gene            13634..13710
                     /locus_tag="ACJFEZ_000791"
     tRNA            13634..13710
                     /locus_tag="ACJFEZ_000791"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13668..13670,aa:His,seq:gtg)
     gene            13715..13791
                     /locus_tag="ACJFEZ_000792"
     tRNA            13715..13791
                     /locus_tag="ACJFEZ_000792"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13749..13751,aa:Arg,seq:tcg)
     gene            13806..13882
                     /locus_tag="ACJFEZ_000793"
     tRNA            13806..13882
                     /locus_tag="ACJFEZ_000793"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13840..13842,aa:Arg,seq:tct)
     gene            13888..13972
                     /locus_tag="ACJFEZ_000794"
     tRNA            13888..13972
                     /locus_tag="ACJFEZ_000794"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13922..13924,aa:Leu,seq:tag)
BASE COUNT         4823 a         2013 c         2613 g         4609 t
ORIGIN      
        1 gcaaatgaaa aaaaatttga tcatagtcga atctcctgca aaagcaaaaa ctataggcaa
       61 ttttttgggc aaagaatatg aagtcatagc ttctaaaggg catataagag atttacctaa
      121 atcaagtttt ggtataaaaa tagaaaatga tgaatttatc cctgagtata gaatcacaag
      181 cgatcatagt gttttagtta aagaacttaa ggaaaaagca aagggagcaa aagagattta
      241 tttagcaacc gatgaggata gagaaggaga ggctatagcc tatcatattg caaaagctat
      301 aggcaaagat gaaaatgtct taccgcgtat cgtttttcat gagattacca aaaatgctat
      361 cgaaaatgct ttaaaaaatc ctagaaaact tgatatgaat tctgttaatg ctcagcaaac
      421 taggcgttta ttagatcgta ttgtaggata taaattaagt cctttgctag ggcaaaaaat
      481 tcaaagaggc ttaagcgcgg gccgtgttca aagtgcggct ttaaagatta tcgttgatcg
      541 tgagaaagaa attcgtgctt ttgttccttt ggaatatttt agtatagata tgatatttca
      601 aaaggattta aatgcagaac ttgtcgaatt tgataaagca aagatagaaa agcttaccat
      661 taccaacaaa gatcgtgcta aacttatact agaagcttgt aaaaatgaag tttatagtat
      721 aagtgacatt gaaagcaaag aaagaaaaat tgctccacct ccacctttta tgacttcaac
      781 cttacaacaa agcgcaagca atcgtttggg atttaaccct aaaaaaacta tgatgatagc
      841 tcaaaaactt tatgagggag taaatactca tgagggtgtg atgggggtta ttacttatat
      901 gagaaccgat agtttaaatt tagccaaaga agcagtagaa aatgcaagaa aattcataca
      961 agcaaatttt ggcaaagact atcttccaac caaagcaaat gtttatacta caaaagctaa
     1021 aggcgctcaa gaagctcatg aagctatacg ccctactaat ttaaatttta ctccagaaat
     1081 cgcagctaaa tttttagata aagacgagtt aaagctctat acgcttatct ataatcgttt
     1141 tttagcttgt cagatgaatc ctgctatctc tcaaactcaa aatgtttttg taaaaaatga
     1201 cagagcagtg tttaagataa gtggtaggaa aattcttttt gatgggtatt ataaagttta
     1261 tggtgatatg gataaggata aaattttacc aaattttaaa ataggtgaaa atttaaaaat
     1321 acaaaattta gaaatgaact cacattttac agaacctcct tcaagatatt ccgaagctgg
     1381 acttgtgaaa aaacttgaaa gcttaggcat aggtcgccct tcaacttatg cgccgactat
     1441 ttctatactc acaagccgtg attatgtaaa aatcgataaa aaacaactca ttcctagtga
     1501 agtcgctttt agtgtaactg aagtgcttga aaagaatttc agtgatatag tagatagtaa
     1561 atttacttca aatcttgaaa atactttaga tgagattgca gaagataaag ctaattggca
     1621 agaaactttg aaagaatttt attatccctt tatgaggaag gttgaagaag gaaaaacaaa
     1681 aattgcaagc caaaaaacgg tgactaaatt gggtgaaaat tgccctgatt gtggtggtga
     1741 acttgcgatt agaaaagggc gttttggaga atttgtagct tgtttaaatt ttccaaaatg
     1801 caaatactca agaaatttaa aaaatgaaag caagaatgaa gctgaagtaa gtgctagcaa
     1861 ggctaaagca aagggcatag gcattacttg tccaagttgc aaagagggtg agatagtaga
     1921 gcgcctttca aaacgcggta aattttatgg ttgtagtgct tatccaaaat gtaattttat
     1981 aagtaaatat aaaccaagcg atgaaaaatg tgaggaatgt ggagaaaatt tagtgataaa
     2041 agagctaaaa aaaggcacat tcttagaatg tttaaaatgc aaaattaaaa aagaaataaa
     2101 ggattaatca tgcaaatcat gctttgtgct atttcaaata tagccagtgg aaattgttct
     2161 gaagattgca aatactgcac ccaaagtgct tatgtaaaaa caaatataca aaaataccgt
     2221 caaaaagaaa tttcacaaat tgttttagag gccaagatag ctaagaaaaa tgaagctttg
     2281 ggtttttgtt tggttacggc aggccttgga cttgatgatg aaaaactcga atatgtttgc
     2341 aaagcagcac atgcagtaca aaaagaagtg cctaatttac ttcttatagc ctgtaatggt
     2401 atggcaagtg tggagcaatt aaaagagctt aaaaaagcag gaattttttc ttataatcac
     2461 aatcttgaag cttcaaaaga attttttcca caaatttgca ccactcatac ttgggaaagt
     2521 agatttcaaa ccaatttaaa tgccaaagaa gcaggactta tgctttgttg tggtggaatt
     2581 tatggtatgg gtgagagtga agaggataga ctaagtttta gaaaatcttt gcaagaatta
     2641 cagccttttt caacgcctat taattttttt atagccaatg aaaatttaaa actacaagtt
     2701 ccaaaattaa gtgctgatga ggctttaaaa attataagtg atactaaaga agctttgcct
     2761 aatactgtgg ttatggtagc aggaggtcgt gaggtggtat tgcaagaaag acaatatgaa
     2821 atttttaaag caggtgcagg tgctattgta ataggagatt atcttactac aaaaggtgaa
     2881 gaaccaagtc gtgatatagt aaaacttaaa gaaatgggat ttacttttgc atccgagtgt
     2941 cattgattca cagggtttaa ttgatctaca aattcttatt gttatagctt tatgtttact
     3001 attttctcca catatagcta aaattttgcg cttaccgatt tcagctactg aaatcatttt
     3061 gggcgcactt atggcgtatt ttggttttat aggtaagagt gaaaatttta ctattttagc
     3121 taatgtgggt ttttattatc ttatgtttat agcgggtatg gaagtcaatt tgcgcgcttt
     3181 ttttaatatg gataaagaaa ttgccaaaaa aagctttttt tatatcatat tgctttattc
     3241 tttttcatcg gctatagtat gggtttttga actttctttc gtgtttgttt tgattattcc
     3301 ggttatgagc gtggggcttt tatccttgct ttataaggac tttggtaaag agtgttactg
     3361 gcttaataca gctatgatag tagcaacatt agctgaggtt gtttccatag tgcttttaac
     3421 catagctgga gcttttttac gcgaggggac aaatattatc gatgtagtac aaagcatttt
     3481 atatcttaat atatttttag ggctttgttt gcttggtttt aaagttttag gtgtgctttt
     3541 ttggtggtat ccccaactta aagtcgtgct gatgccttgg gaagataaaa atgaaaaaga
     3601 tataagattt tgtatggcaa tttttatttt gattatcgtg gctatgatta ttacaaagct
     3661 tgaaatcgtt ttaggctctt ttattgcagg ttcttttatc gcaacttttt ttgaccataa
     3721 aaaggattta gagcataaac tttctagttt tgggcatggt tttttaattc cgattttttt
     3781 tatccatata ggaactactt tcgatcttaa aatgatttta gaatatgaaa tcgtatttga
     3841 tgctattttg ctgatgtttg tgatggtagg tttgagaatt ttgtgtgcca gtgttttttg
     3901 gaaaaaaatt ggctttcaaa atatggtttt atttggactg agtcactcta tgcctttgac
     3961 tcttcttatc gctactgcta cgctaggata ttcaggaaaa gttatcagcg aagaacttta
     4021 ttcggcgcta attttaacag ctttatttga agctattgtt gtgatgagtg cgattaaatt
     4081 tatttcaaat attaaaaagt aatctaaata acacaggtta cttttttact caaaaaggtt
     4141 aatgaatttt aaaattattg acaatgaaaa agttgaaaat cgcctttttt agctagaatt
     4201 actaaaagta aagattaaaa aaggagcaaa aatgtcaaat tctgttactg taactgacaa
     4261 tagaaatggt aaaagctacg aattccctat atatgatggt actactggtc caagtgttgt
     4321 ggatatgggg agtttttata aacaaacagg aatgtttgct tatgatgaag gtttaacttc
     4381 tacagctact tgtaaatcaa aaattactta tattgatggt gaagagggtg ttttaatgca
     4441 ccgtggctat cctatagaat ggcttgctga aaataaactt tttttagatg tagtgcatct
     4501 tttactctat aaagaacttc caagcaatga aagacttgaa gcatttagat atgagcttaa
     4561 aaaacgctct tatatacatg agggtatgca tcgtcttttt gattctttcc ctgataatgc
     4621 tcaccctatg gccgttttac aaggcgctgt ttcatctctt agtgcttttt atcctgatca
     4681 tttaaatatg aatgttagag aagagtacat ggaaatggct gctagagttg tagcaaaaat
     4741 tcctactata gtagccgctg cttatcgtta taaaaatggt tttcctatgg cttatcctaa
     4801 tttagatcgt ggatttactg agaacttttt atatatgtta agaacctatc cttatgatca
     4861 tgttgagctt aaacctatag aagtaaaagc actcgatact gtatttatgc ttcatgcaga
     4921 tcatgaacaa aatgcttcta cttctactgt tcgtgccgta ggttctactc atgcgcatcc
     4981 ttatgcatgt atttcagcag gtattggagc gctttggggt catgctcatg gaggtgcaaa
     5041 tgaaggcgtt attagaatgc ttgaggaaat agctactgtt gatagggtgg atgaatttat
     5101 aaaaagagca aaagataaaa atgacccatt ccgcttgatg ggctttgggc atagggttta
     5161 taaaaatttt gatccgcgtg caaaagtact taaaaagctt cgtgatcaat taatcgatga
     5221 gttaggtatt gatacgaatt tgattaaggt ggcaactcgt atagaagaga ttgccttgca
     5281 agatgattat tttgtacaaa gaaatcttta tccaaatgta gattttcata gcggcttaat
     5341 tttaaaagct ctaggaattc caaatgaaat gtttgcaacg cttttcgtga tcggacgtac
     5401 accaggctgg atagcacaat ggatagagca aaaagagcaa gaaacactaa aaattgttcg
     5461 tccaagacag ctttaccttg gagaaaccag taaaatttaa atgattgtgt gaaattaact
     5521 ttttcacaca aacttcttat ataatttcaa aagaatattt tgaaagtctt acaatgttta
     5581 aactcgataa tttactaaaa accgccatag atgccagtaa tgaagcctct aaagctattt
     5641 taaaagaaag aaaaaaccta caaatttggc aaaaacaaga tcaaagcccc ttaacatcag
     5701 ccgatcttgc ttcaaatgaa attttaaacg atattttagg aaaaacagat attaaaattt
     5761 tatctgaaga aggtttgcta agtcaggaag aaagtaaaaa tttgcaaagt tattggctta
     5821 ttgatccgct tgatggtaca agtgggtttt taaaaggtag tgatgaattt tgcattatga
     5881 tcagtttgat tcatgaagat agacctattt tagctcttat aaaaaatcct tcaaaaggcg
     5941 atatttttta cgctcatcaa aatactagag tttataaaaa tgataaaatt ttagatataa
     6001 gcgaacaaga ttttatagac aatcaatcta aagctctttt aagtgttaat catcttagta
     6061 aagaggatga aaattttgct aaaaaacaca atttgacacc tattaacata ggatcagggc
     6121 ttaaattttg tgctattttg gaaggtagag caggggttta taagcgtttt gagaagttaa
     6181 atagttggga tattgcagct ggagattttt tagtcaatca aaagggtggt tttatgggaa
     6241 ccttttctaa ggaaatgatt ttatattccc ctttaaatta taagtgcgag ccttttattt
     6301 gtgtttctaa aaaaagtttt ttaaatatat atacataaaa acagcatata attttaaaat
     6361 cttaaaggat aaaaatgaaa atttttctta ttttatttat gagtattttg ttaaattcta
     6421 gtctttttgc aaataatttt tcgcaaaaaa aaatcattaa actagaacag caagaaagtt
     6481 ttgaaatcat agatcttcaa caaaatgttg aaaaacaaaa cttagatcag caaaaaggga
     6541 tttttgatag ctctagtttg atgagtaaga aagaaagcat tcgtaaagat aatgatgttg
     6601 attttgctat agctatgagt tttaggcaaa attttggcta tgctttggat ggttttaaca
     6661 taagtgctaa agaattttct actctttttg ctaaaaattt agtggataat ttaagattaa
     6721 attttgtaaa ttcagctgca aacggtgttt atcaagattt aagaacttta gctcgtttta
     6781 gtcctaaaga ctctaaattg cttaatgtat ctcctttttt aaaaaaagaa aaagacaaaa
     6841 gtcaaattta tgccaaattt acagactatc ttgtggtggt aaatttagat gatttttatg
     6901 taaatatcac aaattatttt gttgcaataa ccaaaaatgc agtagctaat attaacttca
     6961 aagttgtttc tacaagtaat ggtaaaatac tcacatcaaa aaatgtaaga ttaaattttg
     7021 cacttcatac acaagatcct agggtaaatt atcaagaact tgtaaatcaa atgccaaata
     7081 tgcttgctga agttataaac aaagagttag aaaaattaaa tttaacagtg caataaaaat
     7141 ttaatcgttg atttgcctaa tgcgatcttg tagctcttct atgcttaaaa attcttgtct
     7201 taattccttt gcgatttcat gcgcagttat aggatcaaga cttgataaaa ttcttttaag
     7261 ctcgtaagtg atttgccatt tagtcatttc ttctaggttg atatttattt gcatgaatta
     7321 tccttttatc gtaagaaaaa attgtctgat tgtagcgtga atttgattaa aaaatgctat
     7381 ctttttaaaa acatatatta aagaaagaag tagaaattta atttaaatga taatcacttc
     7441 ttcttctaat tttatgccaa attcctcaaa aacctttttt ttagcaagtt cgataagaaa
     7501 aatagcatca tcaaaacttg catttttttt attgatcaaa aaatttgcat gcttgtcgct
     7561 taacatcgca tctcctttgc taaagccttt aagtcctaca gcctcaatga gtcttcctgc
     7621 aaaatctcct tttggatttt taaagataga gccaaagctt gctccgctag gttgattgtt
     7681 tcttgcattt tttaaattct catcttttat cttatcaaaa ccaaaaccga gtttaaattc
     7741 agcccaaaaa aaaggcatat ttaaagggca aaagcggtaa ctaaaatcaa tattttcgcg
     7801 taaaatttca ccttttgaag tggcaatttt gactaaattc tgactgatgc actcatcttt
     7861 aagccccgca ttcattttta aaagtccacc aagcgtacca ggaattttgc taaggtattc
     7921 aaaaccataa agattatttt ctttggaaaa acgatacatt tgacttgctt ttgtcttaca
     7981 acctatgcga agatgtaaaa agtctttatt ttgctctaaa atttcaataa aattaaaatt
     8041 atcgcttaaa attcctatat ttttaggctt agggcttata aggagattgt tcgcaccgcc
     8101 tattaaaaag ccatcaaatt cgcgaatttg ttctaaaact tcgacctcaa attcgcctcc
     8161 aatctttaca gatgaatatt tcttaaaatc gataatcatt tgataaaagt tggaatttga
     8221 tttaaaatat tttcggtaaa atcaatcatt gtcgtagtca tccaaggcat taaaaagatg
     8281 atgactatta ctactaagat gattttaggc acaaaagaaa gcgtcatttc attaatctgt
     8341 gttgtagcct gaaagatact gataataagc cccgcgataa gccccgctaa aagcatgggc
     8401 aaagaaagta aaagtgtgat tttaaaggtt tgcactccaa gagcaaccaa ggtgctttca
     8461 tccattttaa tcctttttaa gaatttctaa attcttcata ctcgctcggg ataagataat
     8521 ccttagcatg tatgatttta tcataaaatt tataatcata tcccagttta aaaagcacat
     8581 ccactgcttt aaattgcgtt tcgctcatgc aaatggagtt tttattggca tataaattca
     8641 aataagtatc aagtttttcc tcattaacgc ggattaaatt tctttccatt agcatagggg
     8701 ccaaaatgcg gcgattagaa tttgctattt ttacagcatt tgtaagatct ctttctatct
     8761 tgatagcatc gctaagtggc aaagagcgac gcaaagccat tccacccaaa ggtagaggta
     8821 aattttcttg tgcaagttct agccatatat cccaaatttc agcttccaca caaagactac
     8881 tgtcaaattc taaaatgctt tcatggatta aaacccctgc atccacttcg ccgcttaaaa
     8941 ctgcattttc aatttctaag aaatttttat aaatgattct agcttctgga tatttcatac
     9001 gaaaaattag agcgttggta gtgtttgcgc cacttaatgc aactttaaaa tttcttttta
     9061 aatgtgtatt ttgttttttg ataagttttg gcccataacc ctcaccaaaa cttactgcgg
     9121 tgcgcaaaag agcgtattct ttagcaatta aaggataaag tccaaacgag atcgctgtag
     9181 catcaaattc attttttaag gctaaatcat ttaaagtttg tatatctaaa gccgtatttt
     9241 tatagtcaaa atcattccct atccatccta gtttaattgc catatacata aaaatatcat
     9301 ccgcatcggg tgaatgtgcg attgtaattg tttttttcat agctttccta atttttaatg
     9361 aaataatttt tattctatca aaataaacta ttatttaatt ttattttgtt aaaattctag
     9421 ctaaaaattt gcaattttta aggaaaataa tggacgataa taagaaaaaa tcgcttgatg
     9481 ccgccttaaa atcgctcgat aaagcttttg gcaagggcac tattttaagg cttggagata
     9541 aggaagtaga gcagattgat agcataggaa caggttctgt aggacttgat cttgcacttg
     9601 gtataggcgg aattccaaaa ggaagaatta ttgaaattta tgggcctgaa agttcaggta
     9661 aaacaacttt aactttgcat attatagcag agtgtcaaaa agcgggtggg gtttgtgcct
     9721 ttatcgatgc tgagcatgct ttggatgtaa aatatgctaa aaatttgggc gtagatacag
     9781 ataatcttta tatttctcaa cccgattttg gtgagcaggc tttagagatc gttgaaacca
     9841 tagcacgaag tggggctata gatttgatag ttgtagatag cgttgcagca cttactccaa
     9901 aagctgaaat cgaaggtgat atgggagatc agcatgtagg gcttcaagca agacttatgt
     9961 ctcaagcatt aagaaagctt acaggaattg tccataaaat gaatacaacc gtgattttta
    10021 tcaaccaaat tcgtatgaaa attggcgcta tgggttatgg aactcctgaa acaacaacag
    10081 gaggaaatgc actcaaattt tatgcttcag tgcgtttaga tgttagaaaa gtagcgactt
    10141 taaaacaaaa tgaagagcct attggtaacc gtgttaaagt taaagtagta aaaaataaag
    10201 tagcacctcc atttagacaa gctgaatttg atgtaatgtt tggagagggt ttaagccgtg
    10261 agggtgaatt gatcgattat ggtgtaaaac ttgatatagt agataaaagt ggtgcttggt
    10321 tttcttataa agataaaaaa ttgggtcaag gtagagaaaa ttcaaaagct ttcttaaaag
    10381 aaaatccaga aatagctgat gaaattacca aagaaattca aaattctatg ggtatagaag
    10441 gcatgattag cagtagcgaa gatgaagaag gagaagaata atgttagtaa ttgaagatgt
    10501 tagggcatat gaagtgcttg atagtagagg aaatccaact gtaaaagcag aagttgtact
    10561 tagtgatggg agtatgggtg cagctatagt tccaagtggt gcaagtacag gttctaagga
    10621 ggctttagaa cttcgtgata atgatgaaag atttggtgga aagggtgttt taaaagctgt
    10681 tgcaaatgtt aatgaaacca ttgcagatga aattttagga ctagatgctt ttaatcaaac
    10741 tcaacttgat gatactttgc gtgagcttga tggaacaaat aattactcaa atttaggtgc
    10801 aaatgcaact ttaggtgtat ctatggcaac agcgcgtgcg gcggcaaatg ctttaggagt
    10861 gcctttgtat cgttatttag ggggtgcaaa tgcgagtatt ttgcctgtgc caatgtgcaa
    10921 catcatcaat ggtggcgccc acgcaagcaa taatatagac tttcaagaat ttatgatcat
    10981 gccttttggt tttacaagct ttaaagaagc tttgcgttca gtttgtgaaa tttatgcgat
    11041 cttaaaaaaa gagcttgcaa atttaggaca ttctacagct ttgggcgatg aaggaggctt
    11101 tgctccaaat ttggctaaca atacagagcc tattgatctt ttaatgactt gtattaaaaa
    11161 agcaggttat gaaaatcgtg ttaaaatcgc tcttgatgtg gcaagtactg aattttttaa
    11221 agaaggtaaa taccacatgg agggcaaagc tttttcaagt gaagacttaa ttgaacgcta
    11281 tgtggagctt tgcgcaaaat atccaatttg cagcattgaa gatggtttag ctgaaaatga
    11341 ttttgagggc tggatcaagc ttactgaaaa attaggcaat aaaattcagc ttgtgggcga
    11401 tgatttattt gtaacaaatg aagatatctt aagagaaggc attatcaaaa aaatggcaaa
    11461 tgctgtgctt attaaaccaa atcaaatcgg aactattact caaactatga gaactgttcg
    11521 tttagcacaa agaaacaatt ataagtgtgt gatgagccat agaagtggcg agagtgaaga
    11581 tgttttcata gcagattttg ctgtagcttt aaatacagga caaatcaaaa caggggcttt
    11641 ggcaagaggc gaaagaactg caaaatacaa tcgcttgctt gaaattgagc ttgaaagtga
    11701 tgaatattta ggagaaaaac tctgagtgat ttactcaaag aatatgacga aagcaccaag
    11761 aaaaagagct tttatgccca tcttataaag atggtttttt gggcttttct tgtcattata
    11821 ggagctattt attttggaaa tatgcttttt gggcagtatt ctttagatac cttgctttca
    11881 cttgaagcaa ccaaagaaga attgaataaa aaaatatctt ttctcaaaga gcaaaacgcc
    11941 aaagcacaaa aagattattt tgaattacaa ggattatacc ccaatgaaaa ctaaaatttt
    12001 aggaatattt ttaattttta tttctttatt aaatgctgag gaaaatcctt tcaaatcaga
    12061 gcaaaacatg agtatgatta tgccacctga ttttcaaaaa gaggatatta aatttaattc
    12121 taatgcaaga gttttaaaaa gcgtaagttt taattatatt aatcttgatg gaagtgaaga
    12181 agtattaaat gttgatatta ataaaagcat agattggcac gatacttata ctcttgtccg
    12241 tactaagagc ccagatcctt caaaagtttt tgatgtttca gtaactatac ctgaacgtaa
    12301 tgattctaaa aaagaatcca atggtacagc aaatatagaa ataccgctac aagttgataa
    12361 aatttatgat tttatatctt atgcagtgta taaaaataaa atcaaactca atactagtga
    12421 tgagcttatt agtgattttt ccataggtaa tcctagtaaa attgtagtgg attttaaatc
    12481 agatctagta aatcctacta aaaacatacg cattagtaat tctcttttta agcgtataga
    12541 ttttggctct cataaggggt attatagact tgtgatatat ttggatggaa attataatta
    12601 caatatccaa aaagatgcta caggatatat gatcaatcta ttgtgatgag aatttttgtt
    12661 tttttatggt gtgttagttt tgcttttgct agcgatattt tacttttaag caagataagt
    12721 gaacaagaaa ttcaaaataa gaattttaat ggctatttaa tgagtgaaaa gcttgatgga
    12781 gtcagaggaa tttgggaagt gggaaaattt aaaacccgcc aagataatcc aatttatact
    12841 ccttcttatt ttacttataa ttttcctagc tttaagcttg atggggagct ttggatagct
    12901 agggctaaat ttgatgaggt gtcagcttta attcgtggcg ataatctaga ctcaagcctt
    12961 tggaaaagtg ttacttataa tgtttttgat gtacccaatg cttgtgaaga atttaaactc
    13021 acttcttgta ctttaagcaa ccgccttaag gttttagagc agtatttgca acaaaatccc
    13081 aatccttata taaaaatcat aaagcaaatt cctataaaag atcaagagca tttaaaagaa
    13141 ttttataaag atattgtctt aaataagggc gaaggtgtag ttatacgcaa ggatcttgct
    13201 ccttatgaaa aaggcagaag taaaaacgct tttaaattaa aaccttatga agatgctgaa
    13261 tgtaaagtca taggttatac tgaaggtaag ggtaaattcc aaggtaaaat cggcgcttta
    13321 ctctgtcaaa tgccaaatga tagggtgatt agaataggca gtggtttaaa agataaagat
    13381 agggaaaatc cacctaaaat aggctctatt gttacttata aatttaatgg gttgactaaa
    13441 aattccttac cgcgttttcc agttttttta cgcataaggg attaaaattc ttgactttgt
    13501 tttctttttc tgatataata cctacttttt tcggggtgta gcgcagtctg gttagcgcac
    13561 ttggtttggg accaaggggc cgaaggttcg aatcctttca ccccgaccat tttttataaa
    13621 tttatacaaa atggtgagtg tagctcagtc ggttagagca tcagattgtg gtcctgaggg
    13681 tcgtgggttc aattcccatc actcacccca ctaagcgttc gtagctcaac tggatagagc
    13741 aacagacttc ggatctgtag gttatgggtt caattcctat cgggcgcacc accaaatttt
    13801 tatatgcgtt catagctcag ctggatagag caacggcctt ctaagccgta ggtcagaggt
    13861 tcgaatcctc ttgagcgtac catactagcg gatgtggtga aattggcaga cacgccagac
    13921 ttaggatctg gtgcagcaat gcgtgaaggt tcaagtcctt tcatccgcac cacaatttaa
    13981 aattatatct cccttaaatt agcgcaatcg tctttttctt tacaaaataa aaaatttcat
    14041 tttgttttaa attttatt
//
LOCUS       DBBXRO010000036        13859 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.036, whole genome shotgun sequence.
ACCESSION   DBBXRO010000036 DBBXRO010000000
VERSION     DBBXRO010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13859
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.036"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            4..810
                     /locus_tag="ACJFEZ_000795"
     CDS             4..810
                     /locus_tag="ACJFEZ_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HGG0916925.1"
                     /translation="MEIKWSKDFSIKNIQLDKQHELIFEITEIANDLALKIQDNDVQH
                     KNDLKQILTKLFQYVKIHFKDEEKFMESIDFPLIEEHRKSHQILLKKTKELLEHSNDI
                     VKMSFELSTLTKDWILDHFANEDLWIANFTKKALHLQEIHYNLEQYIKLKSIRQDLKT
                     EKTYDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSFRKFKSRTSKHRTNS"
     gene            725..2596
                     /locus_tag="ACJFEZ_000796"
     CDS             725..2596
                     /locus_tag="ACJFEZ_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HGG0916926.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADNFFVKNYNTIVQKFLIEIYPKKQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENNSYDEGIYCKPVEKNELLFEYIY
                     RVLGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHS
                     GYSVINNLKLSQIGLKTTGSIKTNIDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFRNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPNAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLKKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2600..4237)
                     /locus_tag="ACJFEZ_000797"
     CDS             complement(2600..4237)
                     /locus_tag="ACJFEZ_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HGG0916927.1"
                     /translation="MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDI
                     FYSTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGE
                     AYYTRNGAFRRDAAGNLVDSYGNFVLGTMNPAFAGVSYSDRVAGLMGDYLNTGTPVNS
                     GFTVNSNDAFNIGTTASQGVIKVPVNMYLPPQVTQNVKWSGSLNTNATTEVVKVDLDP
                     AKFNVQKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSITNPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKEGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVINTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4241..5101)
                     /locus_tag="ACJFEZ_000798"
     CDS             complement(4241..5101)
                     /locus_tag="ACJFEZ_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HGG0916928.1"
                     /translation="MLTSSDWTMTNTNTNTAATTTSTSTTSDTSSTSSSGLVSNPNAT
                     LDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQLL
                     SNSFSTSMSTSAIGAIGKMATVSDNKIKLTGSDEVIALKMYLPEDSDENGVTLEVYDS
                     NNKLVFSEKSGEQSVSQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANYG
                     TYPIEGIVFKEGIAYAKMAGQEVPFDAISEITDYKLSSSSSTGSGSSGSGSSGDSSGS
                     TEDSDEEEKA"
     gene            complement(5159..7123)
                     /locus_tag="ACJFEZ_000799"
     CDS             complement(5159..7123)
                     /locus_tag="ACJFEZ_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HGG0916929.1"
                     /translation="MSNLTPSNDILNLTPSNTNTTHSSSSKTKEQDLKKSDNTTQDDT
                     ESFLNSLLNSIEETNEFLPDHMKISKKEVVNEAMDKLQNGVFSESDKISIFESASFMQ
                     ILSLLDKLKADTADIKLANLSIQLSQLVKTEANFNALKSASNLSELLNIAKDLGLNVK
                     NIKVDRLLDLKATFPNLDKANFFKGAVDNVFKEIINNKLAHISKNLNQNVQNLNHTPH
                     ANLSQNSKMTKKDDTSLLSQTLKNLDAIISSKKEKNEVKNDNVKIQTDGETAELKNTS
                     KNLTHSESLKELEQENLTNNDKKIPSQEVQNKEQSKEFKNDKNTLLNESLKKDDKELK
                     NANKANVQDLTPSKNNTTQDKLPMQDKVSARDKALTQEKIIPQDKVSTQEKTLPQDKV
                     LIQEKPLNNKEGLNQETNNIKNIKDLNQALDKNNNLSENPKEQVKNENTNFNKTSNKE
                     NVRDSQNLSLNLSPKDLNLNKDNTNFTHYTNKENYTQEQGKIQSENTEKNPLDDLNSL
                     VKDLNKISQNNTKNITPKETLQHFSQDLKAAMEQYKAPITKLSITLNPHNLGEVEVTL
                     VQRGNNLHINFNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGK
                     NRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            complement(7137..7460)
                     /locus_tag="ACJFEZ_000800"
     CDS             complement(7137..7460)
                     /locus_tag="ACJFEZ_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916930.1"
                     /translation="MSKPLNTEFFIELDTPVINRKSEVLLQVLDLLETLKSNQNEKMA
                     RISSELTELLENEENLEKITRAQNLEELLDILVALNEDKMIKVYENAYLKERFPHLAS
                     SQFLK"
     gene            7589..9397
                     /gene="typA"
                     /locus_tag="ACJFEZ_000801"
     CDS             7589..9397
                     /gene="typA"
                     /locus_tag="ACJFEZ_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HGG0916931.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPQNVRVRKRYLDPTQRKRMEKAKS"
     gene            9397..10047
                     /locus_tag="ACJFEZ_000802"
     CDS             9397..10047
                     /locus_tag="ACJFEZ_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HGG0916932.1"
                     /translation="MDLKSLENKRLYILKRLGILKFLSVVEALLVGFLAFVFTKDILI
                     ALILAVFVGIFFFRLTAKKLKLAKKELEIDALNLFLRRFGAKFRKESLSQKDFLKLEL
                     SENLKDFKSQNCFEFKEFKIYDINFIDENKRFFCGILLEILKPSKNPSFEDEEKIYVK
                     LQDKNFTLNHIFSKDNHYLIATLTNPFFIDLKESLEKNFKNLENNLKLIEEKIIKI"
     gene            complement(10044..11393)
                     /locus_tag="ACJFEZ_000803"
     CDS             complement(10044..11393)
                     /locus_tag="ACJFEZ_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HGG0916933.1"
                     /translation="MSNLNQNEQIKCPNCGIFIDISTALYAQILDKAKQEMLKQKKEF
                     EDEVNAKRAEYTKAFNDLKAQKLEQEKLISEQVSQKLLLEKQKFEQELLTQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENEKLKREQKENEERLKFEVKEE
                     AFKEFKEQEGKKLELEREKIRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQNEYIGDEVKEVPKGVNGADCLHIVKDSFGNICGSILYES
                     KRTKEFNKEWIDKLKLDSIAAKSDIAVLITKTMPKDKQKTHFKEGILICTFAEFKGVL
                     AVLRESIINSYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGLKSLENLAKDED"
     gene            11499..12707
                     /locus_tag="ACJFEZ_000804"
     CDS             11499..12707
                     /locus_tag="ACJFEZ_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HGG0916934.1"
                     /translation="MQKHTKIHGFSKLKLVIILALMSSIAPLSTDMYLPALSHVEQSF
                     HTSKALTQLSLASFFVAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDNI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGSF
                     LLEYFSWHSIFTTLFALGILLFLMILFGLKESAPHLKNKKFSHKEAMKSYKFVLKDKR
                     FLTYVFCAALALAAMFAYITGSSFVFTEFFDLSEQQFGMLFGANALGFVICANINARL
                     VRKFESEKILSKALMIMFVSTLILLINAFLYPNLFLFEASIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGFIQFALAGLISSVVSALDANTPIILACVMCACVLVANMIYF
                     LGKKNPKGKI"
     gene            12704..13405
                     /locus_tag="ACJFEZ_000805"
     CDS             12704..13405
                     /locus_tag="ACJFEZ_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HGG0916935.1"
                     /translation="MKTNSLFISVAVVLASVILAFGFNKALSDFKTLERSVTVKGLSQ
                     KDVEADTLILPIKFTRSGNNLANLYEELESDKQNIIRFLEEQGVKSDEISYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSSLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(13435..>13859)
                     /locus_tag="ACJFEZ_000806"
     CDS             complement(13435..>13859)
                     /locus_tag="ACJFEZ_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916936.1"
                     /translation="NSSQLINPFTGVFSSGKLYESKFEKSLNDLNASVIINLASILQN
                     DFNLHLKDQNISFTELNSAKALIVANKENLLKLNDANLNRAKEVLGEKYTELLKTINQ
                     DEITENTIKSTSVLYSIILLLCIFSLQKTARKNSIVPS"
BASE COUNT         4526 a         2317 c         2171 g         4845 t
ORIGIN      
        1 atcatggaaa tcaaatggag taaagatttt agcattaaaa acatacaatt agataaacaa
       61 cacgaactaa tttttgaaat tactgaaatt gcaaacgatt tagctttaaa aattcaagat
      121 aatgatgtgc aacacaaaaa tgatttaaaa caaattctta caaagttatt ccaatatgta
      181 aaaattcatt tcaaagatga agaaaaattt atggaaagca ttgattttcc tttgattgaa
      241 gaacatagaa aatctcatca aatattatta aaaaagacta aagagctttt agaacactca
      301 aatgatattg ttaaaatgtc atttgaactt tcaacattga ccaaagattg gattttagat
      361 cattttgcta atgaagattt atggatagct aacttcacaa aaaaagctct acatcttcaa
      421 gagattcatt ataatctaga gcaatacata aaattaaaat caattaggca agatttaaag
      481 actgaaaaaa cctatgatta tatttgcaat tgttctttgc gtatccatgc agttccacag
      541 actatacatc aagagcttgt tagcaaagaa aataccttaa agtgcgaaaa atgtgggcaa
      601 attttagttc atttggatta ttttgatttg aatcaaaatt tcgaaaaatt caatgctatt
      661 tttgaagatg cactacaaaa tcaccatttc acgactcaaa aaaatgatat gggggggggg
      721 atagatgaat tttcaagtaa aaaccttaga aactttcaat cctttcgaaa gtttaaatca
      781 cgaacaagca aacacagaac aaattcttga ttttagagtt atagatttta aacttctgtg
      841 ttctagtgta aaaccagcga aaacaaaaac ttatgaaaga aaggattttg acttatttta
      901 tgcagataat ttttttgtaa aaaactacaa taccatagtg caaaaatttc ttatagaaat
      961 ttatccaaaa aaacaaagtt ttccttttac agtcaaactt agatccaact ccaacctaac
     1021 ccatctaaaa gccagtatca accttacaga aaattttaaa tattacccta atttaaaatt
     1081 tgatatttta caaaatatct acaaaataat gatcaaacaa aaatttttaa tcttaagact
     1141 tgataaaaat ttatttgaca agattgatga ttttatctta tcaatacaaa aaagtccatc
     1201 tattaaagaa atagagcttg aaattgccaa aggtgtagat aagattgaac ataaaagtga
     1261 tgaaattatt tatcatagag atgttaacga agaatgtttt gacgaaaaca acagctatga
     1321 tgaaggaatc tactgcaaac ccgttgaaaa aaatgaattg cttttcgaat atatttacag
     1381 agttcttggc aaagaaggaa gaaatttaag aggagagata cttcatttaa atccaatagc
     1441 ctttcttgat aatcctttta tcataaaaga tgaaagcatt tacacagaag aattagaaga
     1501 tagaattaaa tattttagcg ccaattatgg atttttaaat aaagaccact caggatatag
     1561 cgttataaac aatttaaaat tatcacaaat agggcttaaa acaaccggtt caatcaaaac
     1621 aaatatcgat gaaaatataa acttagaaat cactaatttt gatataagtg atgatgctat
     1681 taaatcaggt attgtaaatg ttcaagcttc aaatataaaa gtaaatggga atgttggagc
     1741 aacaaaactt tatggaaaaa atatcagtat caaaggctta actcatgcaa aaagcgaaat
     1801 ttttgcacaa gatattttta ttacaacaca caaaggaact ttgcaagctg acactgtata
     1861 tataaaaaat ttagaaaatg ggacaattat agctaaaaat gtatttgttg aaaactgcat
     1921 gggtggaaaa atagaagcag aaaatattta tatttgcaat ttactaacgg ataatacttt
     1981 atatccaaga aaaaatctaa tcataacaaa caatataaaa tttagaaaca atatcgtagt
     2041 ttcaccacta gtttctattg aaaacaactc agatacagaa tgcgaaaatc ttaaaaatct
     2101 aagccttaaa ataaaaagta agcttgatga caccataagc aaaatgcaaa attactatga
     2161 ttatctaatc aaaaatcaaa tcaaaatcat caaacttcaa aagactaaaa atcctaacgc
     2221 catagaaatg aaattttcaa atctttatca cgatatcata aaaaaataca atcatcttag
     2281 catttcgtat aaaaaattta taaaattaaa atatcaaatt gatgcgaaat taaatttctt
     2341 aaatgaaatg gtttacaatg taaaaatata cataaaagcc gaaaatatcg gagaggataa
     2401 ttttttaaaa ttttatccta acacaaacac caaccttgaa ctaaaacatc atataaattt
     2461 aaaagactat gaaaaggttt tatatcttaa aaaaggacag caagtaagtt atattaaatc
     2521 aagccataat tatagcgaaa gcgacataga agaaattaaa attatttttg aaaaattaga
     2581 aaaagataat tcctaagaat tatcttttca tattaatggc tttttgtatc atctgatcac
     2641 ttgtagtgat actttttgag cttgcatcaa aggctttttg agttacgata aggtttgaaa
     2701 gctctgcgct taaatcaaca tttgattgtt ctaagaatcc gcctttaaat ttagctgtat
     2761 tgatcacttg tccatctttc ataataaagc tagcatctcc gctattggct gttgctgcaa
     2821 aaatattatc tcccatagca accaatcctt gctcattgat aaaattatat aaagcaagct
     2881 ttccaactat ggcattttta ccattgctaa attgcgcaac aatacttcca tcatcggata
     2941 tattatattg ttcaaaaaac ccttcagcta caccatcttg ttgtgtaact acattttttt
     3001 cgacgccttc tttaatataa atcccactat aacccgaacc aggcttgtta gcatcataag
     3061 gagaacctaa atcaatatta attgttccac catttggatt tgtaatgctt gtaatattgt
     3121 tttgaagcaa agcaccattt ttatcaaaaa ccatatttcc ttcagtcgga ttgcctacgg
     3181 cattgccatt agaatcataa atttgtgcaa tagctttata ttgtatatta tcgccttctt
     3241 gcggtaaaac tctttcaagt gtaaccctta aagtgctttt acttccatct gcattataaa
     3301 taggggattc taaaatatct ttattggctt tttgttgctc tgttgaaatt tgagctgtat
     3361 caagcttgat actattttca tccaatcctt ttaaatcaag ctcgttactt ttaaaattta
     3421 gattttcatc taaagtcgct tcaaagcttg tttttacgcc attatcatca gtgaaattta
     3481 aaataatcct atcacccgct ttagcactaa acacatcttc tttgctaaca ctaccactaa
     3541 ctacatattt gccatcttca gtcttttgga cattaaattt cgcaggatca agatcgactt
     3601 taaccacttc tgttgttgca ttcgtattta aacttccact ccattttaca ttttgagtta
     3661 cttgcggagg caaatacata ttcacaggaa ctttaatcac tccttgtgaa gccgttgtcc
     3721 ctatgttaaa agcgtcattt gaatttacgg taaagccact atttacagga gttcctgtgt
     3781 taagataatc ccccataagc cccgcgactc tatcactata actcactcca gcaaaagcag
     3841 gattcatagt tcctaaaaca aaatttccat aagaatctac caaatttcca gcagcatctc
     3901 ttctaaaggc tccatttcgg gtataataag cttctccatc agcacccaaa acaccaaaaa
     3961 aaccttttcc ttgaagtgcc acatcaaatt caccctcact tgctacaggt gaaccttgtt
     4021 caaaaacgac ttgagaagaa gccgcaccac ttccatagcc tccttgggca gggttagtgg
     4081 attgggttgt tatggtgcta taaaaaatgt ctttaaattg cgcatctgag tatttaaagc
     4141 ctgtggtatt gacatttgcg atattgttcg cataaacatc tataccaaag ctattggttt
     4201 taactcctga aacgccatta taaaatgaag tcatcatggc ttaagccttt tcttcttcat
     4261 cgctatcttc tgtagatcct gaagaatctc cgcttgaacc acttcctgaa ctaccgcttc
     4321 ccgtgctaga agaagagctt aatttataat cagtgatttc tgatatagca tcaaaaggaa
     4381 cttcttgacc cgccattttt gcataagcaa taccctcttt aaaaacaatt ccttctatag
     4441 ggtaagtacc ataatttgca gtgatttttt cgccattttt attgttataa accattttaa
     4501 cagtatactc gccatcaccc gcataaacac catcgttatt tcttcctggc cactccatcg
     4561 taaagagccc ttgagaaaca gattgttcgc cacttttttc actaaataca agcttgttgt
     4621 tgctatcgta tacttccaaa gtaaccccat tttcatccga atcctcaggc aaatacattt
     4681 taagcgcgat aacctcatct gaacctgtaa gcttgatttt gttatctgaa acagttgcca
     4741 tctttcctat agctccgata gctgaagtac tcatacttgt gctaaaagaa tttgaaagta
     4801 attgcatagt ttcaaccatt ttttgcatgg tagtatttgt attttgttgc atttcaagtg
     4861 ctgataattg agaagtttgc gtaagcattt tgtcactatc cataggatca gttggatctt
     4921 ggtgctgaag ctcgatcaaa agaagtttta aaaacgcatc tttatcaagc gttgcatttg
     4981 gattagaaac aagacctgaa ctactggttg aacttgtatc tgaagtagta cttgtgctag
     5041 tggtggtagc agcagtatta gtatttgtat ttgtcatagt ccaatctgat gaagttaaca
     5101 ttataaactc ctttttatat ttaagtcttt ttttaataaa agcaataagt gttccaactt
     5161 agaaatactt cgctaaaaca agctctagat tgactttttc actttcattt tttccatcta
     5221 aagcatcttt aaaaccatat ccgcttcgat tttttccttg attttgattt tgctctcttt
     5281 taccttgatc gctaaaattc atttcaagtc cagtaaatcc catatttaca agagaatttt
     5341 taaactcggc ttgattttga ataaataaat tcattgcatt ggtattggaa ttaaaattaa
     5401 tatgaagatt gtttcctctt tgtaccaaag ttacctcaac ttctccaaga ttgtgaggat
     5461 ttagcgtgat actaagcttg gtgattgggg ctttgtattg ctccattgct gcttttaaat
     5521 cctgcgaaaa atgttgtaag gtttccttag gagtgatatt tttagtattg ttttgtgaaa
     5581 ttttatttaa atctttcact aaagaattta aatcatctaa aggatttttt tcggtattct
     5641 cactctgtat tttaccttgc tcttgtgtat aattttcttt attagtgtag tgagtgaaat
     5701 ttgtattgtc tttattgaga ttaagatctt ttgggcttaa attcaagctc aaattttgag
     5761 aatctcttac attttctttg ttggaagttt tgttaaaatt tgtattttcg tttttaacct
     5821 gttctttagg attttcactt agattattat ttttatccaa cgcttggttt aaatctttta
     5881 tatttttgat attgtttgtt tcttgattta aaccctcttt gttattaaga ggcttttctt
     5941 gtatcaatac tttatcttgg ggcaaggttt tttcctgtgt tgatacttta tcttgtggaa
     6001 ttatcttttc ttgagttaat gctttatctc gtgctgatac tttatcttgc attggcaact
     6061 tatcttgtgt ggtattattt ttgctaggtg ttaaatcttg cacattagct ttatttgcat
     6121 tttttaattc tttatcatct ttttttaaag actcatttaa gagtgtattt ttatcatttt
     6181 taaactcttt gctttgttct ttattttgca cctcttggct tggaattttt ttatcattgt
     6241 tggttaaatt ttcttgttca agctctttta aagactcgct atgagttaaa tttttagaag
     6301 tattttttaa ttctgctgtt tcaccatctg tttgaatttt aacattatcg tttttaactt
     6361 catttttttc ttttttgctt gaaatgatag catctaaatt ctttaaagtt tgagaaagca
     6421 aagaagtatc atcttttttt gtcattttag aattttgact aagattagca tgtggagtgt
     6481 gatttaaatt ttgcacattt tggtttaaat ttttactgat atgagcaagt ttattgttta
     6541 taatctcttt aaaaacatta tccactgcgc ctttaaagaa attagcctta tccaaatttg
     6601 gaaaagtagc cttaagatct agcaaacgat ctactttgat attttttaca tttaagccca
     6661 aatccttagc tatatttaaa agctcgctaa gattgcttgc gctttttaaa gcattaaaat
     6721 tagcttctgt ttttacaagt tgagaaagct ggatggaaag attggcaagt ttgatatcgg
     6781 ccgtatctgc ttttaacttg tcaagcaaag ataaaatttg cataaaagaa gcagattcaa
     6841 aaatacttat tttatcactc tcgctaaaaa ccccattttg taatttatcc atagcttcat
     6901 taacaacttc ttttttactg attttcatat gatcaggcaa aaactcattt gtttcttcga
     6961 tagaattgag taaagaattt aaaaaactct ctgtatcatc ttgtgttgta ttgtcagatt
     7021 tttttaaatc ctgctcttta gttttgctcg atgaactatg ggttgtattt gtattgcttg
     7081 gagtaagatt taaaatgtca ttacttgggg tcaaatttga catgatggtt ccttaattat
     7141 tttaaaaatt gacttgacgc taaatgagga aatctttctt ttaaataagc attttcatat
     7201 actttgatca tcttatcttc atttaaagca actaaaatat ccaaaagctc ttctaaattt
     7261 tgagccctcg taattttttc aagattttct tcattttcca aaagctctgt aagctcgctt
     7321 gatattcttg ccattttttc attttgatta gattttaaag tttctaaaag atctaaaact
     7381 tgaagcaata cttcactttt tctgttgatt actggagtat caagttctat aaaaaactct
     7441 gtatttaatg gttttgacat tttaacttcc tttttaaaaa tgatatctag acaaactaga
     7501 agcaagaatc gttccaactt ttgctttttg aaaaattaag caaaagttct atataatttt
     7561 ggctttgaat ttaaatttgg agagcatctt ggaaaatatt agaaatatcg cagttatagc
     7621 ccacgttgac catggtaaaa ccactatggt agatgaacta ctaaaacaat caggtacttt
     7681 tagtgaaaga gaacaaattt cagaacgcgt tatggatagt aacgatatag aaaaagaacg
     7741 cggtatcacc atactttcaa aaaatacagc tatcaattat aaaggcacaa aaatcaacat
     7801 catagacact ccaggccatg ccgattttgg tggagaagta gagcgtgttt taaaaatgat
     7861 cgatggggtt ttgctcttag tcgatgcgca agaaggcgtt atgccacaaa ctaaattcgt
     7921 ggttaaaaaa gccctatctt taggactaaa acctatagtt gtaatcaaca aaatcgacaa
     7981 accagctgct gatcctgaaa gagtaatcaa cgaaattttc gatctttttg tagctttaga
     8041 tgcaaacgat gagcaacttg actttgctat cgtttatgct gcagcaaaaa atggttatgc
     8101 taagcttgat ctaaacgatg aaagcgacaa tatggagccc ctttttaaaa ccatactcga
     8161 gcgcgttcca gctccaagcg gtactaatga caatccttta caacttcaag tctttacttt
     8221 aggatatgat aacttcgtag gtaaaatagg cattgctaga attttcaacg gcgttgtaaa
     8281 gaaaaatcaa agtgtaatgc tcgcaaaagc cgatggtact aaagtaaatg gtagaatttc
     8341 aaaactcatc ggttttatgg gcttagaaaa aatggatata gaagaagcag gcagtggcga
     8401 tatcgttgcg atcgcaggtt ttgaagcttt agatgtgggc gatagcgttg tagatccaaa
     8461 caatcctatg ccacttgatc ctttacacat cgaagaacca accttaagca tagtattttc
     8521 agtaaatgat ggtcccttag caggaactga aggaaagcat gtgacttcaa acaaaatcgc
     8581 tgaacgctta gaagctgaaa tgaaaaccaa tatcgcgatg aaatacgaaa gcacaggcga
     8641 aggcaaattt aaagtaagtg gtaggggcga acttcaaatc actattttag ctgaaaatat
     8701 gcgtcgtgag ggctttgagt tttgcatggg aagacctgaa gttatcgtaa aagttgaaga
     8761 tggggttaag acagaaccat ttgaacattt agttatcgat gtgcctgaag aatttagtgg
     8821 tgcagtgata gaaaagcttg gaaaaagaaa agctgaaatg aaaactatgg cacctacagg
     8881 cgatggacaa acaagacttg aatttgaaat tcctgcacgc ggacttatag gctttagatc
     8941 tcaattttta accgatacca aaggcgaagg cgtaatgaac catagctttt tagaattccg
     9001 cccttttagt ggtgcagttg aaaagcgtaa caatggtgct ttgatctcta tggaaaatgg
     9061 cgtggctttg gggtattctt tgtttaacct tcaagagcgc ggggtgcttt tcatagaacc
     9121 tcaaaccaaa gtatatacag ggatgattat aggtgagcac tctcgtccaa atgacttaga
     9181 tgttaatcct atcaaaggaa aaaatcttac caatgtaaga gcaagcggaa gcgatgatgc
     9241 gatcaagctt gtaccgccta gaaaattaag ccttgaaaga gctttagagt ggatagaaga
     9301 agatgaactt gtagaagtta cacctcaaaa tgtgcgtgtt cgcaaacgct atcttgatcc
     9361 aactcaaaga aaaagaatgg aaaaagcaaa atcttaatgg acttaaaaag cttagaaaat
     9421 aaaagacttt atatactcaa acgcttagga attttaaaat tcttaagcgt tgtagaagct
     9481 ttacttgtgg gctttttagc ctttgttttt acaaaagata ttttaatagc cctcatcctt
     9541 gctgtgtttg taggtatttt cttctttcgc cttacagcta aaaaactcaa acttgcaaaa
     9601 aaagaattag aaatcgatgc tttgaattta tttttgcgtc gttttggggc taaatttaga
     9661 aaagaaagtt taagccaaaa agatttttta aaactagaac ttagcgaaaa tttaaaggat
     9721 tttaaaagcc aaaattgctt tgaatttaaa gaatttaaaa tttatgatat taacttcatc
     9781 gatgaaaaca aacgcttttt ttgtggaatt ttgcttgaaa ttttaaagcc tagcaaaaat
     9841 cctagctttg aagatgaaga gaaaatttat gttaagttac aagataaaaa tttcacccta
     9901 aatcatattt tttctaagga caatcactat cttattgcca ctctaacaaa tccttttttc
     9961 atagacttaa aagaaagtct agagaaaaat ttcaaaaatt tagaaaacaa tctcaagcta
    10021 atagaagaaa aaatcatcaa aatttaatcc tcatctttag ccaaattttc caagctttta
    10081 agcccttctt cgcctatcaa attcccgcct tgcaagtcgc taaatatagc atttaaagaa
    10141 ctcactatgg cagtagaatt aaagcttaaa ttttctatgg ctctttctct ttttttccat
    10201 atattttgca aagccctttt ttcagcttct aactcttctt tcatattttg gtaagttttg
    10261 agtataaaag tgatttgcgt gttaaattcc ttggaattta agtattcgta taaaatgtga
    10321 tttttttcat ctttgttttg caaagcattt ttgagtttat aagaatttat aatgctttct
    10381 ctaagcactg ctaaaacgcc tttaaattca gcaaaagtgc agattaaaat cccctcttta
    10441 aaatgtgttt tttgcttgtc tttaggcatg gttttggtga ttaaaaccgc tatatcactt
    10501 ttagcggcta tgctgtcaag cttaagcttg tcgatccatt ctttattaaa ctctttagtg
    10561 cgtttgctct catacaaaat actaccgcaa atattgccaa agctgtcttt tacgatatgc
    10621 aaacaatccg ccccatttac tccctttggc acttctttta cctcatcacc gatgtattcg
    10681 ttttggatat attcttctat gagtagctct gctgcttcgc cttggagttg ctgtgagcct
    10741 tgctctatcc tgcgttgtgc gtcctctagc ttttgagcta cgcttttaaa atttgtttct
    10801 aattctttgt atttaagatc ttgctcttga gtgctttttt gaaattcaag acgtattttt
    10861 tctctttcaa gctctagttt tttgccctct tgttctttaa attctttaaa cgcctcttct
    10921 ttaacctcaa atttaagtct ttcttcgttt tctttttgct ctctttttag cttttcattt
    10981 tcagctttta tgcttaaaaa ttcgctaagt tctttgctct ttttttctaa ttcttcttgc
    11041 atgattttca tctcattttc atgctctttg ttaaattttt cgctgaattc tttttggaaa
    11101 ttttgctttt gtgttagcaa ttcttgctcg aatttttgtt tttctaaaag aagtttttgg
    11161 cttacttgtt cgcttatgag tttttcttgc tctagctttt gggcttttaa gtcattaaaa
    11221 gctttggtgt attcggctct tttggcattg acctcatctt caaattcttt tttttgctta
    11281 agcatttctt gcttggcctt atctaaaatt tgagcgtata aagcagtgct tatatcgata
    11341 aaaattccac aatttgggca tttgatttgc tcgttttgat ttaaatttga cataaagatt
    11401 tccttgagaa tttttatata aatttaacat agaaaaacaa agattattct aagattgact
    11461 tgttaaaatc cttgttttaa aaataattag gattacaaat gcaaaaacac actaaaattc
    11521 acggcttttc aaagctcaaa ctcgtcatca tccttgcttt gatgtcaagc atagcaccgc
    11581 tttctacaga tatgtatttg cctgcactta gccatgtaga gcaaagcttt catacttcta
    11641 aagcactgac tcaacttagc cttgcaagct tttttgtcgc ctttgcctta gggcaactca
    11701 tatatgggcc tttaagcgat atctttgggc gtaaaattcc tgctttggta ggaattttct
    11761 tctttatcgt ttcaagcttg ttttgtgtga ttatcgacaa tatctatgcc tttatcgctt
    11821 tgagattttt tgaagcacta ggaggctgtg cgggagtagt gatcgcaagg gctattgtaa
    11881 atgacttgtt tgagatcaaa gaagctgcgg ggatctttgc tttgatgatg gtatttagct
    11941 cccttgctcc tatgctttcg ccgacttttg gaagcttttt gctggagtat ttttcatggc
    12001 atagcatttt tacgactttg tttgctttgg gaattttgct ttttttgatg atactttttg
    12061 gcttaaaaga atccgcacca caccttaaaa ataaaaaatt ctcccacaaa gaagcgatga
    12121 aaagctataa atttgtttta aaagataaac gctttttaac ctatgtcttt tgtgctgctt
    12181 tggctttagc tgcgatgttt gcttatatca cgggttcgag ttttgtattt acagaatttt
    12241 ttgacttaag cgagcaacaa tttggcatgc tttttggagc aaatgctcta ggctttgtca
    12301 tctgtgcaaa tatcaatgca aggctagtgc gtaaatttga aagtgaaaaa atactttcta
    12361 aagccttgat gatcatgttt gtatcgactt tgatcttgct tatcaatgcc tttttgtatc
    12421 cgaatttatt tctttttgaa gcaagtattt ttacaagtat cgctatgctt ggctttatcg
    12481 cacccaatac cacgacttta gctatggcga gatttaaaga gcatagcgga accgcttctg
    12541 cggtgcttgg ctttatacaa tttgccctag caggactcat ctcctctgta gtcagtgctt
    12601 tagatgctaa cacaccgata atccttgctt gtgtaatgtg tgcttgtgtc ttggtggcaa
    12661 atatgatata ttttctaggt aaaaaaaatc ccaaaggaaa aatatgaaaa caaactccct
    12721 ttttatatcg gtggcggtgg ttttggcaag tgtgatccta gcctttggct ttaacaaggc
    12781 tttaagcgac ttcaaaacac ttgaaagaag tgtcactgta aaaggactga gccaaaaaga
    12841 tgtggaagca gataccctga tactgcctat aaaattcaca agatcaggca acaaccttgc
    12901 aaatttatac gaagaactag agtctgataa acaaaatatc atacgatttt tagaagaaca
    12961 aggcgtaaaa tcagacgaga tcagctacaa ctcacccaac atcatcgatc gcctaagtga
    13021 tccttatagc aacgacactc aagctgcata ccgatacata ggcactgcga atttactcat
    13081 ctatactcaa aatgtaaagc ttggaaaaag catactagaa aacatttcaa gtcttgcaaa
    13141 atttggcata gtaacgaaaa tcgatgatta tgatatagaa tacctttata caaaactcaa
    13201 tgaaatcaaa ccacaaatga tagaagaagc aacgctcaat gctagaaatg cagcgataaa
    13261 attcgcacaa gattcaaaca gtagcctagg caagataaaa aaggcttctc aaggacaatt
    13321 tagcatcagc aacagagata aaaacacccc ttatatcaaa accataagag tggtttctac
    13381 tatagaatac tacttaaaag actgatgata aaatttcaag ctaagcttta aggcttagct
    13441 tggcactatg gaattttttc gtgcggtttt ttggagtgaa aatatacaaa gcaaaaggat
    13501 aatgctatat aaaacactag tggattttat ggtattttct gtaatctcgt cttgatttat
    13561 agtctttaaa agttctgtat atttttctcc taaaacttcc ttggctctat ttaaattcgc
    13621 atcgtttaat tttaaaagat tttctttgtt tgctactatc aatgctttag ctgaatttaa
    13681 ctctgtaaaa gaaatatttt gatcttttaa atggagatta aaatcatttt gcaatatgct
    13741 tgctagattt ataatgacac tggcatttaa atcatttaaa cttttttcaa atttactttc
    13801 ataaagtttg cctgatgaaa atacacctgt aaaagggttt ataagttgtg agctattaa
//
LOCUS       DBBXRO010000037        13751 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.037, whole genome shotgun sequence.
ACCESSION   DBBXRO010000037 DBBXRO010000000
VERSION     DBBXRO010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13751
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.037"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            10..876
                     /locus_tag="ACJFEZ_000807"
     CDS             10..876
                     /locus_tag="ACJFEZ_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HGG0916937.1"
                     /translation="MKFVNFKFNQKATLGVFNSSGKVVNLADLDINVRDMNELIINFD
                     EFKHKFKDLDSKTAYEIPKEDYLAPIIEPRQDIICLGINFLDHAKESAQFKGEKFEER
                     EYPVYFGKRCNQATAPFGSISLHADVTSQLDYECELAFILSKDAYKIKAEDAKDYIFG
                     YTIINEISARDLQKRHKQFYRAKSLEGSTIMGPYITSVDEIAYPPELHLKSYVNKELR
                     QNSNTKFFIFDIGYVLEELSSGMLLKAGTIISMGTPSGVGMGLNPPVFLKKGDEIRCV
                     IENLGEICNIIS"
     gene            924..1091
                     /gene="dba"
                     /locus_tag="ACJFEZ_000808"
     CDS             924..1091
                     /gene="dba"
                     /locus_tag="ACJFEZ_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HGG0916938.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            1106..2623
                     /locus_tag="ACJFEZ_000809"
     CDS             1106..2623
                     /locus_tag="ACJFEZ_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HGG0916939.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANFVFGYMLGDSPCTL
                     CWGQREAMIFIGVIALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVMFAFAPKFGSFDKELNGEKFRKFTKFSFAAVL
                     ISTLIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSTEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNNTNNSPFAEIDDELKIINEQTINFDKAINTLDYIND
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSATIDPIIGIIPYKENKFLLMGSNKSFLR
                     FAKNPNADETLQYADFIKGNDKFEGQGESLGRGRLDTVRAKFNHVASMTTDDHYLYLA
                     TVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIYALS
                     KNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN"
     gene            complement(2644..3318)
                     /gene="queC"
                     /locus_tag="ACJFEZ_000810"
     CDS             complement(2644..3318)
                     /gene="queC"
                     /locus_tag="ACJFEZ_000810"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HGG0916940.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            3394..4620
                     /locus_tag="ACJFEZ_000811"
     CDS             3394..4620
                     /locus_tag="ACJFEZ_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HGG0916941.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMKIIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHTIINDYEMK
                     LINDRILPFVPENLRAEFSYILGIREGRSNEASFVKNEFENRTYKNAKIELCSGSLSS
                     FNQNEFGAIDGKALKYCDKIAAFIEAGLSISYGVKSKELENGFEDMFRFFNESPTIDG
                     VNFLEICREFRDYFKI"
     gene            complement(4667..6343)
                     /gene="ilvD"
                     /locus_tag="ACJFEZ_000812"
     CDS             complement(4667..6343)
                     /gene="ilvD"
                     /locus_tag="ACJFEZ_000812"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HGG0916942.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNEYAKIIKDEIRKNGCIPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSVE
                     SVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMRSGVTKKGEKISLSS
                     VFEAVGAYEANKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIKNIITQKAIRNAMVVDMAMGGSTNTILHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNTVYMDDIHKAGGVSAVMAEISSRE
                     GHILELDALTITGESLQDRLKNAKIKDETIIRKVDNAYSKVGGLAVLFGNLAEQGCVV
                     KTAGITGERKFKGKAVCFNSQDEAIKGIIKGKVQKGDVCVIRYEGPKGGPGMQEMLSP
                     TSLIMGMGLGADVALITDGRFSGATRGLSIGHVSPEAAEGGLIGLLKDGDEIEIDVDA
                     YIINANLSDEEIAKRKNDFVMPQKEVKSRWLRMYQKLVTNASKGAVLDME"
     gene            6494..7141
                     /locus_tag="ACJFEZ_000813"
     CDS             6494..7141
                     /locus_tag="ACJFEZ_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HGG0916943.1"
                     /translation="MRQYESYKCPKCGNEVEVQNVGGGKLSCCGVEMECITQDLTAIN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            7179..7754
                     /locus_tag="ACJFEZ_000814"
     CDS             7179..7754
                     /locus_tag="ACJFEZ_000814"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HGG0916944.1"
                     /translation="MKTLFEENELLTPFDINLIGIDEAGRGALAGPMMMAACKLHKDL
                     EGLCDSKKLSEKRREELYEIILLHSDYLILAFSSEKIDEIGLSACLKMGLTLIKKHFK
                     TENNFLYDGNTNLGISGIKTQIKADANIKQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKELIAKFGICKLHRKSFKLL"
     gene            complement(7755..9200)
                     /locus_tag="ACJFEZ_000815"
     CDS             complement(7755..9200)
                     /locus_tag="ACJFEZ_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HGG0916945.1"
                     /translation="MGNARGFLDFKRVDFKKVAPKERVLNFKEFTTLLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGKSVSIKNNELAIIENAFKENLVSPNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKVGGLLMYGIPDMKLDKSIVDRRVDLLKESGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQSNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKDKVESVEACDLKREFKEGKA
                     INVELPNSNQNYKADLVLLAMGFSGSEDAIASNFGVSLDEENNVKTKNFQTTHEKIFA
                     CGDARKGQSLVVWAIKDGIECALNIHENLAK"
     gene            complement(9210..13700)
                     /gene="gltB"
                     /locus_tag="ACJFEZ_000816"
     CDS             complement(9210..13700)
                     /gene="gltB"
                     /locus_tag="ACJFEZ_000816"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HGG0916946.1"
                     /translation="MDLENILENNQSVGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFMTQELGFELPQKGDYAVAQMFLS
                     PNADAKEEAKAIFLQGLKDKNLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPST
                     VNAGLEFERVLYACRRLIEKRALHVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMESEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMGSKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDENNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKQWLKNLVELEKQH
                     SGVYKHKFLKEDEVLKLQKAFGWSYDELKMSVASMAQNGKEALAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKISLPI
                     ISNEELFEVKALNNFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIVLHKHAFNDTHKALDSKGIHGFRSD
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKDGVNK
                     NSAIKQVASGRFGVDLNYLSHAKELQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKNANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVMGCTMMRVCHLNTCPFGIATQDKELRDRFKGKVDDV
                     VNFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKPMQGKAGKVNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALSEDSIQIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNDATFSPEENIIAGNACLYGATEGEVYLDGIAGERFCVRNSGAKAVVLGTGVHGCE
                     YMTGGLVVVLGDVGANFAAGMSGGVVYIFGRYNEAHVNTELVDIKDLSTKDEKELKTM
                     IENHIAYTNSKKAKDILEKFDKKDFFKVMPRDYEKMLEMIELCKDEEDPSLAAFLKIT
                     QK"
BASE COUNT         4401 a         2605 c         2138 g         4607 t
ORIGIN      
        1 attttataaa tgaaatttgt taattttaaa tttaatcaaa aagctactct aggggtgttt
       61 aactcaagtg gaaaggtcgt aaatttagcc gatcttgata tcaatgttcg tgatatgaat
      121 gaattgatta taaattttga tgaatttaaa cataagttta aagatttaga ctctaaaaca
      181 gcttatgaaa ttccaaaaga agattatcta gctcctatca tagaacctcg acaagatatc
      241 atatgtcttg ggatcaattt tttagatcat gccaaagaat ctgcacaatt taaaggcgaa
      301 aaatttgaag aaagagaata tcctgtatat tttggaaaac gctgcaatca agccacagct
      361 ccttttggca gcatatcttt acatgctgat gttacttctc aattagacta tgaatgcgag
      421 cttgctttca ttttaagtaa agatgcttat aaaatcaaag ctgaagatgc aaaggattat
      481 atttttggtt ataccatcat caatgaaatt tcagcacgag atctccaaaa acgccacaag
      541 caattttacc gcgcaaaaag ccttgaggga agtactatca tggggcctta tatcacaagt
      601 gttgatgaga ttgcttatcc gcctgaactt catttgaaaa gttatgtcaa taaagaatta
      661 cgacaaaact ccaatacaaa attttttatt tttgacatcg gatatgtctt agaggaacta
      721 agctcaggaa tgctcttaaa agccggtacc atcatatcaa tgggaacccc aagcggtgta
      781 ggaatgggtt taaatccgcc cgtttttctt aaaaaaggtg atgaaatacg ctgtgtaata
      841 gaaaatttag gagaaatttg taatataata tcataaactc ttattaaaac aatttttaat
      901 aagttcaatc aaaaggagaa attatggagt tcttagagct tttattagtt ttaatcgcct
      961 tgatactgat tatcaaaaaa ccagaaaaag aaaatttggc ttttggtttg gtaatggtag
     1021 cttggctttt aatggttttt ttctatgttg gccacaaaac aggtgcgctt ttaacgataa
     1081 tgaatctgta aagaaaggct agagaatgaa cgaaataaat aaaacaaaaa atttctacac
     1141 tcttatgtgt ttagcaggct ttttgattat tcttttgcct gtagggattg caaattttgt
     1201 atttggttat atgttgggtg atagcccatg cactctttgt tggggacaaa gagaagcgat
     1261 gatttttatc ggagttatag cactttttat cgtgcgttat ggtatgaaag gcaaatacct
     1321 tgccgctctt ttaatcatga ctgcagtagg tctttatcag tcttttgcac attatggcaa
     1381 tcacgctcat agagatttag atcaaggttt tggtttggca gtttttggta tccatactta
     1441 tttttgggct gaagtagtct tttgggctgt agtcttgctt ttgggtgtga tgtttgcttt
     1501 tgctcctaaa tttggatctt ttgacaaaga attaaacggt gaaaaattta gaaaatttac
     1561 taaatttagc ttcgcagcag ttttaatcag cacccttatc gttgcatcaa atgtttttca
     1621 agcttttgta agcacaggaa ttcctcctta tgtaggacaa ggtgatccag taagatttag
     1681 tcttaatcca aaatatatca tttggagcac agagggttgg aatggtttat ggcaaaatat
     1741 ttctttctta ggaaagcgtg atgttaaagc tcctgattat gcttttgcac ctgcgagtga
     1801 aaaattgggt ataaaatttg ataataatac aaataattct ccatttgcag aaattgacga
     1861 tgagcttaaa attatcaatg aacaaaccat aaattttgat aaagcaatca atactcttga
     1921 ttatattaat gatgaatttg tagcaagttc taaatgggat gtggctttct tagataataa
     1981 ttttagcgtt aaagaaggtt ttgagcttga tccttatttt tcagctacta tcgatcctat
     2041 cataggtatc attccttata aagaaaataa atttcttctc atgggatcta ataaatcttt
     2101 cctaagattt gccaaaaatc caaatgcgga cgaaacttta caatatgcag attttattaa
     2161 aggaaatgat aaatttgaag gtcaaggcga aagtttaggt cgcggaagac ttgatacagt
     2221 tagagcaaaa ttcaaccatg tagcaagtat gacaacagat gatcattatc tttatcttgc
     2281 aactgttcca aacaacaaag acgctaaaac ttttgtaatc tctaaagttt ctttaaaaga
     2341 tcgtgttctt tcaggagaat ttactccaaa agcaaatctt aaagaaggta aaactttagg
     2401 cgatctttat gtaacttcta tgacttttaa agatggggaa atttatgcac ttagcaaaaa
     2461 tcacaatgtg attgccgtaa ttgatccagt caaagaagaa gtagtgaaaa ctatcgcttt
     2521 cccaagctct atcactaatg ctagaagtat tttctttaaa gatggaaaaa tcaatattct
     2581 ttcttatcaa gatggagcaa acaagcttta tactttaaac taagctttaa gtcctagtga
     2641 aaactaggac ttatatttaa tcttatcttt aaatcctgct ttttcaaaac ctcttaaacg
     2701 aagcaaacaa ctatcgcact ccccacaagc ttcatcttca ctctcataac aagaccaagt
     2761 aagttctaaa ggtacatttt cttttaaggc tagttctaca attttagctt tgtttagtct
     2821 aacaagcgga gtttttatac aaactttgaa attcttactc gtaccttcat tgataaattc
     2881 ttgtgccttt tgtataaact catcagtaca gtcaggataa ccactgccat cttcttctac
     2941 cacccctata aaaatactct cacaattttc cttttcagcc aaagatcctg ctatacttaa
     3001 gaaaattcca ttgcgaaaag gcacataagt gataggtgga gtatcgcttg tacaaagctc
     3061 atttttaggg atgtctatac ttttatcggt taaggcattg ccccctatat ctttgataaa
     3121 actcacatct aaaatataag atttttctac ttttaaagcc ttgcaaattt gcttaaaaca
     3181 ttctttttct ttttcttgag tgcgttgttc atagtcaaaa tgcaaagcga tgatttcata
     3241 accttctttt ttggccagat aagcacacaa agtactatcc ataccgccac ttatgataca
     3301 aagtgctttt ttactcattt ttatccttaa atttgctata atttcacaat tttaacgaaa
     3361 atttttaaat ttaaattgca aaaaggcaaa agcatgataa acataaaact catagaacac
     3421 atttttaaag ccgcttccat cagtcgttgg aatgattatc caagaatggc aaatttagtc
     3481 gagcttgata aacaagcgca taaatttatc atagcttatt tcattgcaaa aatggaaaaa
     3541 gatgtggata tgaaaattat catagagggt ggaatttttg agtttttaag tcgtgttgtg
     3601 gtaactgata tacgccctga tgtgtatcat gaaatcgtgc gtcaaaaaaa agctgaagtt
     3661 aatgcttggg ttttaagcaa aatcgaacct atgatagaag atatagaaga tggggaattt
     3721 ctaaagcgtt ttgaagcgta tttaaacggt aatgcttatg ctaaagaaag acttatctta
     3781 aaagcagctt catattttgc tacaagatgg gaatttaaca tagtttatca aacctcagct
     3841 tttttaaatg atattgatga gattaaaaac aaagttgaag aagaattaga agattactat
     3901 gagcttatag gagctagaaa aatcgctctt aatcaaaaaa tcgcaaaaat aattgattta
     3961 agcggaagac ttcgttttca aaagcgttgg gctcaaaccc cgcgcatacc tgaaactgct
     4021 gttttaggac atatgcttgt agtggcgatt ttaggatatt tttattcact taaaatcaaa
     4081 gcttgcgata aaagacttga aaacaatttt tattgcgctt tatttcatga tttacctgaa
     4141 tctttaacgc gtgatatcat aagccctgta aaatacggca tagacggact tcacactatc
     4201 atcaatgatt atgaaatgaa actgatcaat gatagaattt taccctttgt gcctgaaaac
     4261 ctaagggctg aattttctta tatcttaggc attagagagg gcagaagcaa tgaagcaagt
     4321 tttgtcaaaa atgaatttga aaatcgcacc tataaaaatg ctaaaataga gctttgtagc
     4381 ggaagtttaa gctcttttaa tcaaaacgaa tttggagcaa ttgatggcaa ggctttaaaa
     4441 tactgcgata aaatcgctgc ttttatcgaa gcagggctta gcataagcta tggagtaaag
     4501 tctaaagaac ttgaaaacgg ttttgaagat atgtttagat ttttcaacga aagccctaca
     4561 atcgatggag taaatttcct cgaaatttgt agagaattta gggattattt taaaatttaa
     4621 tcttattttg attataaact ccaagaacgg aatgaaagaa actctttcat tccatatcta
     4681 aaaccgcacc cttgctagca tttgttacaa gtttttgata cattctaagc catctggatt
     4741 ttacttcttt ttgaggcatt acaaagtcat ttttgcgttt tgcgatttct tcatcgctta
     4801 aatttgcatt gatgatataa gcatctacat cgatttctat ctcatcacca tcttttaaaa
     4861 gccctataag tccaccctca gcagcttcag gagaaacatg acctatgctt aaaccccttg
     4921 ttgcaccgct aaatcttcca tcggtaatca aagccacatc tgcaccaagc cccataccca
     4981 tgataagtga agttggactt aacatctctt gcatacctgg gccacccttt ggcccttcat
     5041 aacggatcac gcaaacatcg cctttttgca ctttaccttt aatgatacct ttaatagctt
     5101 catcttgcga attaaaacaa acagctttgc ccttgaattt tctctctcct gtaatgcctg
     5161 cagtttttac aacacagcct tgttcggcta aatttccaaa taaaaccgca agccccccta
     5221 ctttagagta agcattatct accttacgaa tgatggtttc atctttgatt ttagcatttt
     5281 ttaaacgatc ttgtaaactt tctcctgtga tggttaaggc atcaagctct aaaatatgtc
     5341 cttctctgct tgaaatttca gccattacag cacttacacc ccctgcttta tggatatcat
     5401 ccatataaac agtattaagt gatggagcga tttttgcaat atgtgcaacc ttgcttgaaa
     5461 taaaatttaa atccttgata tcaagcgcaa ctcccgcttc tcttgaaata gctagcatat
     5521 gtaagattgt atttgtgctt ccacccattg ccatatctac caccatagca tttcttatag
     5581 ctttttgggt gataatattt ttgattttaa atctttcatc taaagcgatt tcacaaattc
     5641 ttcttgcagc ctttcttaaa agctcttctc tttctttact aagtgctaag atcgtaccat
     5701 ttccttctaa agctataccc atagcttcac ataaagtatt catagaattt gcagtaaaca
     5761 tacccgagca agagcctcca cttgggcaag ccgaacattc tatatcttta aattcttctt
     5821 cgctgatttt attggcctca tatgctccta cagcttcaaa aactgaacta agacttattt
     5881 tttcaccctt tttagtcaca cccgaacgca taggaccacc gcttacaaaa atagtcggta
     5941 cattaaccct taaagcaccc attagcatac ctggagtgat tttatcacaa tttggaatac
     6001 aaattaaagc atctaactga tgcgcattca taacgctttc aactgaattt gcaatgattt
     6061 cacgactcgg caaagaataa agcataccct catgacccat agctatgcca tcatccacgc
     6121 ctatagtgtt aaattcaaaa gggatacagc cattttttcg aatttcatct tttataattt
     6181 ttgcatattc atttaaaaaa taatgccctg gaataatatc aatatagcta tttgccacac
     6241 ctataaaagg cttgtcaaaa tcctcatctt ttaagccgca tgctctaagt aaagagcggt
     6301 tgggtgcttt taaatgccct tttttaatcg catcacttct cactaaaaac tccttaatat
     6361 ttttttaata ttataactta atttttataa aatttacttg caagaagtaa gctttctgtg
     6421 tataattttc atcaattgac aaaagtattt ttttataata caatgctttt tgattatcaa
     6481 aaaggagtac aaaatgagac aatatgaatc ctataaatgt ccaaaatgcg gcaatgaagt
     6541 agaagttcaa aatgtaggcg gtggaaaact tagctgttgt ggtgttgaga tggagtgtat
     6601 cactcaagat ttaactgcaa taaatttgat gaaagctttt gctggagaat caatggctag
     6661 aaataaatac gatttatttg cggatgtagc tgaagaagaa ggatggcatg cggttgcaag
     6721 acattttaga gaagcagcag aaaatgaaaa atggcatgca agagctgaat ttaaagctta
     6781 tcacgaaatc gttgatggca aacctttaga agtaactaca aaaaacctag taactgctgc
     6841 agaaggtgaa aactatgagc acacaactat gtatccaaat tttgctaaaa tcgctgaaga
     6901 tgagggtaaa aaagctatag caagattatt tactgcgatt ggaaaagtag aaatagaaca
     6961 cgaaagagaa tacctagctc ttaaaaaaat gcttgaagaa gaagaattct ttaatagcga
     7021 agtagaagaa ctatgggttt gtgaggtttg tggacatatc catcgtggca aaaaagctcc
     7081 tgcagcctgt cctttatgta aagcacctaa agaatacttt aagcgtgaat ttttaggcta
     7141 aatccttggg cgatttttcg ccctttctta gagaaaattt gaaaacttta tttgaagaaa
     7201 acgaactttt aactccattt gatattaact taatcggcat tgatgaagca ggacgaggtg
     7261 ccttagcagg tcctatgatg atggcagctt gtaaactgca taaagatctt gaggggcttt
     7321 gtgattctaa aaaattgagc gaaaaaagac gcgaagaact ttatgaaatt atcttacttc
     7381 attcagatta cctcatcctt gctttttctt cagaaaaaat tgatgaaata gggcttagcg
     7441 cttgtttaaa aatgggttta acactcataa aaaaacactt taaaacagaa aataatttct
     7501 tatacgatgg caatacaaat ttaggcatta gcggtataaa aactcaaatc aaagccgatg
     7561 ccaatatcaa acaagtaagt gcagcaagca tacttgcaaa ggtgagcaaa gatagggtaa
     7621 tgaatttttt agctaaagat tttccttgct atgagtttga aaaaaacaag gcttatggga
     7681 caaaagccca taaggaattg atagcaaaat ttggaatttg caagcttcat cgcaaaagtt
     7741 ttaaactttt atgactattt tgctaaattc tcatgtatat ttaaagcaca ctctataccg
     7801 tcttttatag cccaaacgac taaagattgt ccttttctag catctccaca agcaaagatt
     7861 ttttcatgtg tggtttggaa attctttgtt ttgacattgt tttcctcatc caaacttact
     7921 ccaaaattac tagcgatagc atcttcactt ccgctaaaac ccatagccaa aagtactaaa
     7981 tctgctttat agttttgatt agaatttgga agttcgacat ttatagcctt accttctttg
     8041 aattcgcgtt ttaaatcaca tgcttctacg ctttctactt tgtctttacc taagaatttt
     8101 tttgtcattt tttgatattc tctaggatct ttgccatata cagcaatggc ttcttctaaa
     8161 ccataatctg tcgtaaagat atcagctttt aaaggccaag gattgctttg gcttctttgt
     8221 aaaggtcttt ttgggcttct ttcaaaacgc actatggact tagctccttg tcttgtagct
     8281 acagcgatac aatcaacact tgtgtcccca cttcctataa ccaagacatt tttacccttt
     8341 gctgtatcag cacccttacc tgtttttagc aaggttttgg tattttgcgt taagaaatca
     8401 agagcaaatt caacgccctt tagttttcta ccctctatat caagatcgat aggcttgctc
     8461 gctcctgtgc aaagtactaa agcatcaaat tcttttaaaa gtttagaaac cttatctttg
     8521 ctgtctatat tttcatttac cttaaattct ataccgcttt ctttgagtaa atcaacgcgt
     8581 ctatcaacta tacttttatc aagcttcata tcaggaattc catacattaa aagcccgcct
     8641 actttatcgc ttctttcaaa aacacttacc ttgtagccaa gtgaatttaa ggtattagca
     8701 caagcaagtc cagcaggccc acttcctatg acggcgattt ttttgccatt gtattgttta
     8761 ggtttatttg gacttactaa attttcttta aaagcatttt ctatgatggc tagctcgtta
     8821 tttttgatac ttacgctttt tccattaatc gcacacacac aagaatcctc acaaggagcc
     8881 ggacaaacac ggccagtaaa ttcaggaaaa ggattggtaa gatcaagtct ttcataagct
     8941 tctttccata aagaacgata aataagatca ttccattcag ggatgagatt gtttaaagga
     9001 cagcctacat ccttgccttc actcatcaca cccgtatggc aaaatgctac cccacaatcc
     9061 atacatcgtc cgccctgaat ttcttgttct ttcttgtcta aaagcgttgt aaattctttg
     9121 aaatttaaaa ctctttcttt aggagcaact tttttaaaat ctaccctttt aaaatctaaa
     9181 aaacctcttg catttcccat ttttactcct tatttttgtg tgattttcaa aaatgctgcc
     9241 aaacttggat cttcttcatc tttgcaaagc tcgatcatct ctaacatttt ttcataatct
     9301 cttggcataa ctttaaaaaa gtcttttttg tcaaattttt cgagtatgtc cttagccttt
     9361 ttagaattgg tataagcgat atgattttct atcatcgttt ttaattcttt ttcatcctta
     9421 gtgctaagat ctttaatatc cacaagctcg gtatttacat gggcttcatt gtatcttcca
     9481 aagatataaa ccacaccccc actcatacct gcagcaaagt tcgcacccac atcgccaagc
     9541 actacgacaa gcccccctgt catatactca caaccatgca cgcctgttcc taaaactacc
     9601 gctttagctc ctgaatttct tacgcaaaat ctttctcctg ctataccatc taaatacact
     9661 tcaccctcgg ttgctccata caaacaagca tttcctgcga tgatattttc ttcaggtgag
     9721 aaagtagcat catttgaaat tttagcaatg atcttacctc cgcttaaacc tttacctaga
     9781 taatcattgc tatcgcctat aatctcaagc ttaataccct ttaacaaaaa tgctccaaag
     9841 ctattgcctg catttcctat ggctttaatt tgtatgctat cttcgcttaa agcgtctttg
     9901 ccataagttt ttagaatttc acttgaaagc atagtagcaa aagtacggct ttgatttcct
     9961 acctctaaag aaagtttgat aggctctttt ttctccacag catttttaca aagtgggagt
    10021 aaaattctat aatcaatcgt tttttcaagt ttattgtctt tatagtcttt aaaatgcaca
    10081 gcggttctgt tataagtagg taaggatttt aaaattttat ctaaattcac tttacctgct
    10141 ttaccttgca taggtttttg acggagttta tcaactcttc ctatcatatc atcaaggcgt
    10201 tcaaaaccaa gtcttgccat atattctcta agctcttcag ctataaaata catgaaatta
    10261 accacatcat ctactttgcc tttaaaacga tctctaagtt ctttatcttg agtggcaata
    10321 ccaaaaggac aagtattaag atgacaaact ctcatcatcg tacagcccat aacaatcaaa
    10381 ggcgcagtag caaagccaaa ttcttcagct cctaaaagtg cagctatagc taaatcgcgt
    10441 ccattcatca gctttccatc agtttctaat cttactctat ctctaagctt gtttaagatc
    10501 aaagtttgat gcgtttcagc taagcctaac tcccaaggaa ttcccgcatg cggtatagaa
    10561 gttctagggc ttgctcctgt tcctccatca taacctgaaa caaggattaa attcgctcct
    10621 gcttttgcca cacctgcagc aactgttcct ataccatttt cgcttacaag ttttactgaa
    10681 attttggcgt ctttattcgc attttttaaa tcataaatga gttgagccaa atcttctata
    10741 gaataaatat catgatgagg tggtggagaa atcagcgtca cacccgctgt agaatgtcta
    10801 gccttagcta tccaaggata aactttaaag cccattaatt gtccgccctc gcctggtttt
    10861 gcaccttgag cgactttgat ttgtaattct tttgcatgac ttaagtagtt taaatccacc
    10921 ccaaaacgcc cacttgctac ttgtttgata gcggaatttt tattgactcc atctttgatt
    10981 tcatagcgtt cctcatcttc accgccctcg cctgaatttg atttagcacc tattttattc
    11041 atagcctgtg ctaaacactc gtgtgcttct ttagaaatag aaccataact catcgcccct
    11101 gttctaaagc gtttaactat actttctaca ctttcaacct tatctatact gatagcttca
    11161 ctaaaatcaa attccatcaa agaacgcaaa ttaacttgtt tttcatctac taaagccgag
    11221 tattttttaa agcttttata gtctttattg cgacaagctt gctgaagatt aaaaatcaca
    11281 agtggatcga ttaagtgttc ttctttatca cttctaaaac catgaattcc tttagaatct
    11341 aaagccttat gcgtatcgtt aaaagcatgt ttgtgtaaaa caatgagctc tttttcaaaa
    11401 tcttctaaat ccataccttc aatgcgtgaa gttgtagaag taaagtattt atcaatcacc
    11461 ttagagctta agcccaaaca ctcaaaaaga gcagaaccat tataactttg taaagtagaa
    11521 actcccattt tagaagcaat tttgactata ccacttgaac ttgctttgat aaaattttct
    11581 accgcctttt cataacttaa atttaaatct ttattggcaa tgagtttttg tatactctca
    11641 taaaccaaat aaggattaat aacagtcgca ccataaccta aaagacatgc aaaatgatga
    11701 atttctctag gttcaccact ttcgatgata agacttgtat gtgttcttaa attttttctt
    11761 actagatgat tatgcactcc agaaacagca agcaaagcag ggatataagc gtttttttca
    11821 tccactcctt tatcgcttaa aatgataata gaaacacctt ttttaacctc atcttctatc
    11881 ttaacgcaaa gttcatctaa agccttttct aaagtttttt tagaataatc ataaagtata
    11941 gaaaattctt taacttggaa attgtttaag gctttaacct cgaaaagctc ttcattgcta
    12001 ataataggca aagaaatttt aacacgcttt gcattatttt catctggttt tagcaaattc
    12061 ccttcgcttc ctaaatatat ccttgtagaa gtaacaatct cttctcttat agcatctaaa
    12121 ggtggattag tcacttgagc aaaaagttgt ttaaaataat tatacaaagg ctgataagtc
    12181 ttagaaagaa tagccaaagg agtatccaca cccatagccg ctaaagcttc tttgccattt
    12241 tgtgccatac ttgctacact cattttaagc tcatcatagc tccatccaaa agctttttga
    12301 agttttaaaa cctcatcttc ttttaaaaat ttatgtttat aaaccccgct gtgttgtttt
    12361 tcaagctcta ctaaattttt aagccattgt ttataaggct tcgcattagc ataatgctct
    12421 ttgatttcat tatcagctat tactctacct cttgcagtat ctacaagtaa aagttttcca
    12481 ggttctaggc gttttttagc tttgatattg ttttcatcaa gttttaaagc tcctgtttcg
    12541 cttgaaagta tgagcatatc atcttttgta agataatatc ttgaaggacg aaaaccattt
    12601 ctatctaaac tcgcccccat gataacccca tcagtaaaaa ctatagcagc aggtccatcc
    12661 caaggctcca tcaataaaga atgatactca taaaaagcac gctttttact tcccatgttc
    12721 tcatttttat gccaaggttc tggcaccatc atcataaaag cttcttctaa agtgcgacca
    12781 tttagagcta aaaattctaa agtattatca aacatagcag aatcactact tggttttgct
    12841 atgataggaa aaatttcatc taaattttca aaatattcac tttccatcaa accttctcta
    12901 gctcttatgc tatcaacatt tccgcgtatg gtattaatct ctccattatg caccatataa
    12961 cggtttgggt gggctctttc ccaacttggg aaggtattag tcgaaaaacg agaatgcacc
    13021 aaagcaatgg cagatttcat attgacatct ttaaaatcaa gataaaaatc actcaattga
    13081 gtagaaagaa gcattccttt ataaactata gtgcgtgaag aaaagcttga aaaataaaat
    13141 ttaggcacat gcaaagctct tttttctata agacgacgac aagcataaag tactctttca
    13201 aattcaagtc ctgcattaac cgtgcttggt ttttttacaa aagcttgtaa aaaataaggc
    13261 atagctttta aagcgcttgc tcctatatcg ctaggattaa aaggcacttc tctaaaacct
    13321 aaaaattcta aatttttatc ttttaaacct tgtaaaaata tcgcttttgc ttcttcttta
    13381 gcatctgcat taggcgataa aaacatttgc gctacagcat aatcaccttt ttgaggaagc
    13441 tcaaaaccaa gctcttgagt catgaaaaaa tcatgaggaa tttgaatcaa aattcccgct
    13501 ccatcacctg aattttcttc agctcccgca ccgcctcggt gttcaagatt catcaaaatt
    13561 tctaaagcgt cacaaataac cttataagaa gcaataccgc gtatattggc aactgcggca
    13621 ataccacagg catcgtgttc atttttaggg tgatataaac ctacgctttg attgttttct
    13681 aagatatttt ccaaatccat tttattctcc ttataagatt gattttaaat ttgatagctt
    13741 gttaaggatt a
//
LOCUS       DBBXRO010000038        13509 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.038, whole genome shotgun sequence.
ACCESSION   DBBXRO010000038 DBBXRO010000000
VERSION     DBBXRO010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13509
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.038"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            26..1369
                     /locus_tag="ACJFEZ_000817"
     CDS             26..1369
                     /locus_tag="ACJFEZ_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015379 - potassium:chloride symporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HGG0916947.1"
                     /translation="MKQFGLDRRTFKILLAGYIVIALLGAILLHSSWAHTSPISFIDA
                     FFTSTSAVSMTGLIVKNTAVDFTLAGQIIILILVQIGGLGYMSIGLFVYLIIRKKVGF
                     NGRNLLKESLFYPSMEGLFKFFKKVLLFIFTIELIGTILLTMRFALEMNFGKALWFGF
                     FHSISAFNNSGFTIFENGLLAYKHDVAINLIFTSLIIIGGLGYFVLVELYFFQRKRLQ
                     NLSLHTKVVIMATLFLIISSTLIIFLLEYANPKSIGSFSLFDKILSSYFIAINYRTAG
                     FNTLDMSGLHDASLFFGSLFMVIGGAPGGTAGGMKITTVVVLLFYAYWSIRNGRVRIF
                     NHEIPQEIISRAFIIAVGSAVYIVIAVIFLSLLESEFNFIRLLFETSSAFATVGISVG
                     DGGDLSLCALFSNPSKIIIIIMMLSGRIGVFAFLLSVFQQDKAIHIKFPKGKIYL"
     gene            1382..2032
                     /locus_tag="ACJFEZ_000818"
     CDS             1382..2032
                     /locus_tag="ACJFEZ_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HGG0916948.1"
                     /translation="MKKLSYGVIGLGKFGSVVADELLAGGHTVIIADKDEEALKSIQN
                     SPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVNNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKKLVKDFLTKDADYEVFDLSANTIRAIKITIDDK
                     LAGNSLKHIAQNMRVISYKKLNTDWEILPDLETTTVYGGDVVILLGTVKELREFEH"
     gene            complement(2033..2704)
                     /locus_tag="ACJFEZ_000819"
     CDS             complement(2033..2704)
                     /locus_tag="ACJFEZ_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HGG0916949.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGFKASMEHKKGVPSKLNKD
                     LFYRRIDAAIVSSIESARKKYKNLDLGICANKRVLSVLVEKNTPNAKDPSSATSNALA
                     KVLKQEGRVIIGDKALKLYLQDPSRYTDLCTKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDIRYYLDEIIYHKISTKEKAALKRFIKVCK
                     ALNLT"
     gene            complement(2710..3336)
                     /gene="upp"
                     /locus_tag="ACJFEZ_000820"
     CDS             complement(2710..3336)
                     /gene="upp"
                     /locus_tag="ACJFEZ_000820"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HGG0916950.1"
                     /translation="MKNIHHICHPLIEHKLGFLRDKETKPFHFRMLIDEISTFLLFEA
                     TKDLCLKETQIQTPVANAKVKRLDEKIMICPILRAALGMLDSIFRLIPDASVGFLGFV
                     RNEKTLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AALQGLQKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(3333..4568)
                     /locus_tag="ACJFEZ_000821"
     CDS             complement(3333..4568)
                     /locus_tag="ACJFEZ_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HGG0916951.1"
                     /translation="MNLKEEALRYHLGGKIDIKPSKPMNSSHDLSLAYSPGVAEPCIE
                     IASNNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFADVNAY
                     DLEIEAHSIEEIVAFCKAIAPTFGGINLEDISAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFEEIKVVVSGAGAAGIASARMYRNLGVKNIILVDSKGVVN
                     KKRTDLNQYKLEFVSDTQADTLKEAMKDADVFLGLSAPKILDDEMILSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRATKITENMK
                     VAAAKALADLAKLPVSDAVKNAYKISHLEFGKDYVIPKPFDERVKAVVSTAVAAAAVK
                     DGVALLKEFDEKTYFESLK"
     gene            complement(4568..5959)
                     /gene="gltX"
                     /locus_tag="ACJFEZ_000822"
     CDS             complement(4568..5959)
                     /gene="gltX"
                     /locus_tag="ACJFEZ_000822"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HGG0916952.1"
                     /translation="MTGKLTTRFAPSPTGYLHIGGLRTALYSYLYARKNKGNFLLRIE
                     DTDLKRNSKEATQAIIEAFKWCGLDYDGEVTYQSERFDLYKKYIQKLLDEGKAYYCYM
                     SKEELDELRAKQEAAKERPRYDGRYRDFTGTPPSNIEPVVRIKAPQKGEICFIDGVKG
                     EVKFKVEDILDDFIIARSDGSPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFEIPKFYHVAMIHGEDGKKLSKRHGATDVMEYKAMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKRLFDPNHINKSASCYNFKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYTKAGFLLDLLRERAKTLLEIISGAKSIVEAPQNYDENAINKFINENNLLLLQNYAN
                     ELNEEKSAKDFEEFTNEFLQKNEVKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVNEC
                     KKRIKKFLDFKGK"
     gene            6024..6839
                     /locus_tag="ACJFEZ_000823"
     CDS             6024..6839
                     /locus_tag="ACJFEZ_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916953.1"
                     /translation="MKKILLSFVFFISLTHANTINAIAVVVDKEPITTYDIEQTMKTL
                     NIPKNQALGILINEKMELSQIKQFGIYTSELELDNAIGKMLAQNKISLEDFKRDLQAK
                     GQNYEQFRSNFKKDFEKRKLYEKIASTAKTDFSDEGAKKFFEQNKNKFTLFTEINVNI
                     YRSNNAQDLENIKATTKTALKAEKATLTPNNSDPRLLGLLSSIPIGSFSPVLNSQKGY
                     EIYQVKDKNGGQTPEYYQIKNEILNAYVSEQRQNYIQDYFDKLRSKINIEYLR"
     gene            complement(6867..8198)
                     /locus_tag="ACJFEZ_000824"
     CDS             complement(6867..8198)
                     /locus_tag="ACJFEZ_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HGG0916954.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIISAAEIAEADAIFPGYGFLSENQTFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVEHEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQIIGDS
                     FGNVIHIGERDCSMQRRHQKLIEESPAILLDEKTRARLHETAVKAAKAISYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQENVKLKGHS
                     IECRITAEDPKTFLPSPGKIIKYVPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAISKMKVALDELIIGGIKTTKDFHLAMMDNPDFISNNYDTNYLARH"
     gene            complement(8200..8655)
                     /gene="accB"
                     /locus_tag="ACJFEZ_000825"
     CDS             complement(8200..8655)
                     /gene="accB"
                     /locus_tag="ACJFEZ_000825"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HGG0916955.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     LACPPVPAPQPINVNVVNEAQPSSAKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSSV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIVEILVADGQPVEFGMPLFTVEKL"
     gene            8813..9373
                     /gene="dcd"
                     /locus_tag="ACJFEZ_000826"
     CDS             8813..9373
                     /gene="dcd"
                     /locus_tag="ACJFEZ_000826"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HGG0916956.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFLEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            9423..10427
                     /gene="pseB"
                     /locus_tag="ACJFEZ_000827"
     CDS             9423..10427
                     /gene="pseB"
                     /locus_tag="ACJFEZ_000827"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HGG0916957.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSVAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLIEQGAKELPITDTRMTRFWISLEDGVKFVLSNFARM
                     HGGEIFIPKIPSMKITDLAHALAPHLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDQESDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            10429..11559
                     /gene="pseC"
                     /locus_tag="ACJFEZ_000828"
     CDS             10429..11559
                     /gene="pseC"
                     /locus_tag="ACJFEZ_000828"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HGG0916958.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALDIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELITKIKLLRSHGIIKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHTGIGVQVHYKPTYEFSFYKKLLGEIRLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            11552..12868
                     /locus_tag="ACJFEZ_000829"
     CDS             11552..12868
                     /locus_tag="ACJFEZ_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HGG0916959.1"
                     /translation="MNKLDFRSQDFSQTGKAMYELACELFPIPRSITGQGFRDSLEIL
                     NKTLGGGILKFHSIKSGTKVFDWIVPDEWNAKEAYIITPEGEKICDFKKHNLHLLNYS
                     EAIDKEIELEELQNHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYKVYI
                     NAKHDENGILDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAKWLLS
                     LKERKYNYRFVIIPETIGSIVYLSKHLEHLKKHVKAGFVLSCLGDDHAYSLIHTPKEN
                     TLSDKVALHTLKNKENFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYLEYEQYHTS
                     KDDLNFISEKGLMGGLQSIQEMILNLEINAVYENTIVCEPNLGKRGLYHTLSTANDIP
                     LACNFLAYCDGENDIIDIANILNMQAYEFKELLEKILEYKLLSIIH"
     gene            complement(12851..>13509)
                     /locus_tag="ACJFEZ_000830"
     CDS             complement(12851..>13509)
                     /locus_tag="ACJFEZ_000830"
                     /inference="COORDINATES: protein motif:HMM:NF014571.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046353 - aminoglycoside
                     3-N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HGG0916960.1"
                     /translation="QNIDGDNRKKLNFLLDCMKDNVDTLAIHTFNWDFCKGLAYDILN
                     SKSQTGALGNIALKRDDFRRTKHPIYSFAVAGKFQKELVVLENKGAFDNNSPFAFMHK
                     NNAKMIIVNLPLQDSFTFVHYVEECLKVDYRFNKSFEALYTDEKGFTQLKTYDMFVRK
                     DGVLTDVNGLENLFIKENVMELKKFENLCIKKIDLSKAYDVIVKDIEDNHAKNLMNYA
                     "
BASE COUNT         4533 a         2398 c         2086 g         4492 t
ORIGIN      
        1 aaattaaaaa ccaatgagga tttttttgaa acaatttggc ttagacagac gaacttttaa
       61 aattttgcta gcaggatata ttgtcattgc tttacttggc gctattcttt tgcattcaag
      121 ttgggctcat acaagtccta ttagttttat cgatgctttt tttactagta cttcagctgt
      181 gagtatgact ggacttattg ttaaaaatac agcagttgat tttaccttgg caggacaaat
      241 tattatttta attttagttc aaattggcgg cttaggttat atgagtatag ggctttttgt
      301 ttacttgatt atacgcaaaa aagtaggttt taatggtaga aacttactta aagaatcttt
      361 attttatcct tccatggaag gactttttaa attctttaaa aaagttttac tatttatttt
      421 tacaatagaa cttataggca ctatacttct taccatgcgt tttgcacttg agatgaattt
      481 tggtaaagcc ttatggtttg gattttttca ttcaatcagt gcttttaata attcaggttt
      541 tactattttt gaaaatggac ttcttgccta taagcacgat gtagctatta atctcatctt
      601 tacttctctt attatcattg gtggacttgg atattttgtc ttagttgaat tgtatttttt
      661 tcaaagaaaa agactgcaaa atttaagcct acataccaaa gtagttatta tggcaaccct
      721 ttttcttatc atttcttcaa cacttattat ctttctttta gagtatgcta acccaaaatc
      781 cataggtagc ttttctcttt ttgataaaat tttgagttct tattttattg cgatcaatta
      841 ccgcacagca ggatttaata cactcgatat gagtggcttg catgatgcaa gcttattttt
      901 tggctcttta tttatggtga ttggaggagc accaggtgga acagcagggg gaatgaaaat
      961 cacaactgtt gtggtgcttt tgttttatgc ttactggagc attcgcaatg gaagggtaag
     1021 aattttcaac cacgaaattc cacaagagat catttcaaga gcatttatta tagcagtggg
     1081 ttcggctgtt tatatagtta tagcggttat tttcctttct ttgctagaat cagaatttaa
     1141 ttttatccgt ctgctttttg aaacctcatc agcatttgca acagtgggaa tttcggtagg
     1201 agatggggga gatctttcgc tttgtgcttt atttagcaat ccaagcaaaa ttattattat
     1261 tattatgatg ttaagcggaa ggattggtgt ttttgcgttt ttactttctg tatttcagca
     1321 agataaagcg atacatatca aatttcctaa aggaaaaatc tatttataaa ggttaaatat
     1381 aatgaaaaag cttagttacg gggttatagg acttggaaaa tttggatccg tagtcgcaga
     1441 tgagcttctt gctggaggac atactgtaat catagccgat aaagatgaag aagctttaaa
     1501 aagtatacaa aattcaccaa gctatgccta tatcttggat tctaccaata tttcagcact
     1561 caaagaagcg ggttttcatg atgtagaagt cgtgattgta agcataggtg aaaatgttga
     1621 aaaatccata cttactctaa tggctcttaa agatatagga gtaaataata ttatcgcaaa
     1681 agccacttct aacattcatg ggcaaatttt atccaaactt ggggctacaa aagtaatcta
     1741 tcctgaaaaa gaaagtgcta aaaagcttgt aaaagatttt ttaaccaaag atgcagatta
     1801 tgaggttttt gatctatcgg ctaatactat ccgtgctatt aaaatcacta tagatgacaa
     1861 attagcagga aattcattaa agcacattgc acaaaatatg agagttatta gctataaaaa
     1921 acttaataca gactgggaaa tattgcctga tttagaaaca actactgttt atggtggtga
     1981 tgttgtaatc ttacttggaa cggttaaaga gcttagagaa tttgagcatt aattaagtaa
     2041 gatttaaagc cttgcaaacc tttataaaac gctttaaggc tgctttttct ttggtggaaa
     2101 ttttatgata tatgatttca tctaaataat atctaatatc ttttatatct aaatcccttg
     2161 ttttagcata attttggagt atataataag gaattttaat ctttgttttt ggaaattttt
     2221 ttaagatttg tttatataaa gctttttttt gcacacatga aaacctagca aaaacaaaag
     2281 gcaggcctgt tttttcatgc cattttgtgc acaaatcagt atacctagaa ggatcttgta
     2341 aataaagttt taaagcctta tcacctataa tcaccctccc ctcttgtttt aaaaccttag
     2401 ctaaagcatt agaagttgcc gagcttggat ctttagcatt gggtgtattt ttttctacta
     2461 aaacacttaa aactctttta ttggcacaaa tacccaaatc taaattttta tatttttttc
     2521 tagcgctttc tatacttgaa acaatagctg catcaattct tctataaaat aaatctttat
     2581 ttagcttact tggaactcct tttttatgct ccatacttgc tttaaaacca ttaggtaaag
     2641 gatatttctt aagatatata tgcaaaggta aaagattaat ataatcaatt tttccaaaaa
     2701 tcatctcttt taaagagtgt taaacactct atctcctgca tctccaagcc ctgggataat
     2761 ataacctttt tcatttaaac cttcatcaat acaagccaca aaaacttcta catcatcatg
     2821 catttggcta aatttttgca aaccttgtaa agcagcaagt atggatataa attttatttt
     2881 tttaactcct tggcttttta aaaaattaca agcctctata gcagtcccac ctgtagcaaa
     2941 cataggatct ataacaatag cggtgcgttt ttttgcatct ttaggaagtt tttgaaaata
     3001 aaaatccgcc ttgagagttt tttcatttct aacaaaaccc aaaaatccta cactagcatc
     3061 aggaataagt ctaaaaatac tatcaagcat acccaaagct gcccttaaaa tagggcatat
     3121 cataatcttt tcatctaatc tttttacctt agcattagca acaggggttt gaatttgtgt
     3181 ttcttttaaa cataaatctt tagtcgcttc aaaaagcaag aaagtagaaa tctcatcaat
     3241 gagcattcta aaatggaaag gtttagtttc tttatcgcgc aaaaacccta atttatgctc
     3301 tatcaaagga tggcatatgt gatgaatatt tttcatttta aactctcaaa atatgttttc
     3361 tcatcaaatt ccttaagcaa agctacccca tcttttacag ccgcagcagc taccgcagta
     3421 cttacaacag ccttaaccct ctcatcaaaa ggttttggga taacataatc ctttccaaat
     3481 tctaaatggc ttatcttata agcattttta accgcatcac ttacaggtaa ttttgccaaa
     3541 tctgctaaag cttttgctgc agctactttc atattttcag taatttttgt cgcacgcaca
     3601 tctaaagccc cacgaaaaat aaaaggaaag cctaaaacat tattgatttg attaggataa
     3661 tcacttcttc ccgttcctac aatagcatct tttctaagcc ttgccacatc ttcaggcatc
     3721 acctctggaa taggatttgc caaggcaaag ataacaggat cttttgccat agacaaaatc
     3781 atctcatcat ctagtatctt tggtgcacta agccccaaga atacatccgc atctttcata
     3841 gcctctttta aagtatctgc ttgcgtatcg cttacaaatt caagcttgta ttgatttaag
     3901 tctgttcttt ttttattgac cacaccctta ctatctacaa gaatgatatt tttaacacct
     3961 aaatttctat acattctagc actagcaata cccgcagctc ctgctccact tacaacaact
     4021 ttaatctctt caaatttttt accacttatc tccatagcat tcataagccc tgcggttgag
     4081 ataatagcgg ttccatgctg atcatcgtgc attacaggaa ttcctaaatc ctgcaaagcc
     4141 gcttcgattt caaaacattt aggtgctgaa atatcttcta aattgattcc gccaaaagta
     4201 ggtgctatgg ctttacaaaa agcaacaatt tcttcaatgc tgtgtgcttc gatttctaaa
     4261 tcatacgcat ttacatcagc aaatttttta aacaagcaag ccttaccttc cataaccggt
     4321 ttagaagctt gcgcgccgat atttccaaga cctaaaaccg cagaaccatc actaacgata
     4381 gctactaaat tcgctttgtt tgtataagta taagcaagct cattattaga agcaatttca
     4441 atgcaaggtt ctgcaacacc tggactataa gccaaagata aatcatgact tgaattcata
     4501 ggttttgacg gctttatatc tatcttgcct cctaagtgat atcttaaagc ctcttctttt
     4561 aaattcatta ttttccttta aaatctaaaa atttttttat tcttttttta cattcattga
     4621 cccctaaaaa ctctaaaact tcaaaaatgc taggactaac cgcacttcct gttagagcta
     4681 tgcgtatagg ttgagccaaa tcttttaatt ttacctcatt tttttgtaag aattcgttag
     4741 taaattcttc aaaatctttt gcacttttct cttcatttaa ctcatttgca tagttttgaa
     4801 gcaataaaag attgttttcg tttataaatt tatttatagc attttcatca taattttgtg
     4861 gcgcttcaac gatactttta gctccgctaa taatttcaag taaagttttt gcgcgctctc
     4921 ttaataaatc gagtaaaaat cctgcttttg tataaacgct tagatcaaaa ccaagatctt
     4981 ttaactgacg attgatttct tcaaaaggca aagtcttgat ataatgagca ttgagccatt
     5041 caagtttttt aaaattataa caagaagcac ttttgttgat atgattagga tcaaaaagcc
     5101 ttttaagatc ttctaaagaa aaaacctcat catcgccatg gctccatcct aaacgcacta
     5161 aaaaatttag caaagcttga ggtaaaattc ccatagcctt gtattccatc acatcggttg
     5221 ctccgtgtcg ttttgaaagc tttttaccat cttctccatg tatcatagcc acatggtaaa
     5281 atttaggaat ttcaaatcct aaagcctcat aaagcacgat ttgtttagga gtatttgaaa
     5341 gatgatcatc ccctctaatc acatcgctta ctcccattaa agcatcatca attacaactg
     5401 taaaattata agtaggactt ccatcacttc ttgctatgat aaaatcatct aaaatatctt
     5461 ctactttaaa tttcacttcc cctttaacac catctataaa gcaaatttca cccttttgag
     5521 gagcttttat acgcaccacg ggttctatat ttgatggtgg agttcctgta aaatccctgt
     5581 atctgccatc atatcttggg cgttctttgg ccgcttcttg tttagcacgg agttcgtcaa
     5641 gctcttcttt actcatataa caataataag ccttgccctc atccaaaagt ttttgtatgt
     5701 attttttata aagatcaaag cgttcagact ggtaagttac ctcaccatca taatccaaac
     5761 cacaccattt aaaggcttct atgatagctt gcgtagcttc tttggaattt ctttttaaat
     5821 ccgtatcttc tatacgaagt aaaaaattgc ccttattttt tcttgcatac aaataactat
     5881 aaagagcggt tcttaaacca cctatatgca aatatcctgt agggcttgga gcgaaacgag
     5941 tcgtaagttt tcctgtcatt ttttgccttt tcttaaattt taattgatat aatgcgatat
     6001 ttacacttaa ataaaggttt gaaatgaaaa aaattttact aagttttgta ttttttataa
     6061 gcttaactca tgcaaatact ataaatgcta ttgctgtagt ggtagataaa gagcctatca
     6121 caacctatga tatagaacaa accatgaaaa ccctaaatat acctaaaaat caagccttgg
     6181 ggattttgat taatgaaaaa atggagcttt cacaaataaa acaatttgga atttatacga
     6241 gtgagcttga gcttgataat gccattggta aaatgctagc acaaaataaa atttcacttg
     6301 aagactttaa aagagattta caagctaagg ggcaaaatta cgaacaattt cgtagcaatt
     6361 ttaaaaaaga ttttgaaaaa agaaaacttt atgaaaaaat tgccagcaca gctaaaaccg
     6421 attttagcga tgagggggct aaaaaatttt tcgaacaaaa taaaaataaa tttacactct
     6481 ttaccgaaat taatgtaaat atctatcgtt ctaacaatgc acaagattta gaaaatataa
     6541 aagctaccac aaaaactgca cttaaagcag aaaaagccac cctcactcct aataattcag
     6601 atccaagact tttaggactt ttatcatcta tacccatagg aagcttttct ccggttttaa
     6661 attcgcaaaa aggttatgaa atttatcaag taaaggataa aaacggagga caaactccag
     6721 aatattatca aattaaaaat gaaatactca atgcttatgt aagcgagcaa agacaaaatt
     6781 atatacaaga ttatttcgat aaattacgct caaaaatcaa tatagagtat ttaagataaa
     6841 atcaagatgg aaaaaatcca tcttgattaa tgtctagcaa gatagttggt atcgtaatta
     6901 ttactaataa aatcaggatt atccatcatt gcaagatgaa aatctttagt agttttaatc
     6961 ccacctataa tcagctcatc caaagctact ttcatttttg aaatggcttt gttgcgatct
     7021 tctgcccaaa ccacaagttt tcctatcata gaatcataat acggcggcac gctgtagtct
     7081 tgataacaat ggctttccat tctaacattg cgccctgcag gtggaacata cttgataatc
     7141 ttacctggac ttggcaagaa agtcttagga tcttcagcag tgattctaca ttctatagaa
     7201 tgtcctttta acttcacatt ttcttgagaa ggtaaagcat aaccttcagc tactttaatc
     7261 atttgttcaa tgatatcaat cccgctcacc atttcgctca cacaatgctc aacttgcaaa
     7321 cgcgtattca tctctataaa ataaaaatcc aaatttttat ctactaaaaa ttcaaaagtc
     7381 cctgcaccct catagcttat agctttagca gcttttactg ctgtttcgtg aagtcttgcg
     7441 cgagtttttt catcgagtaa aattgctgga gattcttcta taagtttttg gtggcgtctt
     7501 tgcatagagc aatccctctc accaatatgg atcacatttc caaaactatc tccgatgatt
     7561 tgaacttcta tatggcgtgg attttgtatg tatttttcca tatacatagt cccatcgcca
     7621 aaagctgtca tcgcttcact ttcagctgac caatatgctt tttcaaggtc tttttcatgc
     7681 tctactacac gcattccacg acctccgcct ccagctgctg cttttaaaat cacaggataa
     7741 ccgatctctt tagcaagttt tttagccgct tcagcacccg ctaaagctcc atcacttcct
     7801 ggtataacag gaactcctgc tctttgcata acttgcttag cttttgattt atcactcatc
     7861 aaattcatag cttcaaccga aggccctata aatttgatat tgtgtttagc acaaatttca
     7921 acaaaagttt gattttcgct taaaaatcca taacctggaa aaatcgcatc cgcttctgca
     7981 atttcagctg ctgaaataat agcaggtata ttaagataac tttcagaact tcttgctttt
     8041 cctatacaaa tacttgcatc tgcatatttt aaatacaaag catctttatc tgcttcagaa
     8101 taaacgcaaa ttgctttttt tcccatttct ttaattgttc ttaaagctcg aagtgctatt
     8161 tctccacgat tagcaattaa aatgctttta atttccattt tataatttct ccaccgtaaa
     8221 taaaggcata ccaaattcta caggctgacc atctgcaact aaaatttcta ctattctaca
     8281 atcaaattca gcttcgatct cattcatgat tttcatcgct tcgatgatag cgatagtatc
     8341 gcctttttta actgaactac ccactttcac aaaaggagct gcgcctgggc ttggagcttg
     8401 ataaaaagtt cctaccatag ggctgtttat acttggttta tttgattttg cacttgaagg
     8461 ctgtgcttca ttaactacat taacattaat aggctgtgga gctggaacag gtgggcaagc
     8521 caaaggagct ggaacatcac aacacatatc tctttcaagt tcgatttcaa atccatcttg
     8581 ctctttgatt tttattttac tgatattagc ctcggcaaac aaatttacta attctttaat
     8641 ctcttctttt gtcatatttt catctcctga ttttaagaac ttaatctagt attatattaa
     8701 aaaacttgaa atttaacttt aaaaaataaa atttcacgct taaaagtttc ataaaatata
     8761 aaaaataagc tataatccaa aaaaattatg tttaaaaata aaggtatatt aaatgggttt
     8821 aaaagcggat aattggataa gaaaaatggc attagaacac aagatgatcg aaccattttg
     8881 cgaagcaaat ataggaaaag gcgtagtaag ctacggactt tcaagctatg gttatgatat
     8941 acgcgtgggg cgcgaattta agatttttac caatgtaaat tctaccgtag tggatccaaa
     9001 aaatttttta gaagaaaatg tggtggattt tgaaggtgat gtatgtatag tccctgctaa
     9061 ttcttttgca cttgctagaa ctatagaata ttttaaaatg cctgatgatg ttttggctat
     9121 ttgtcttgga aaaagcacct atgcaagatg tggtatcatc gtaaatgtaa ctccttttga
     9181 accaggcttt gaagggcata taaccataga aatttcaaat accactccct tgcctgcaaa
     9241 aatttatgct aatgagggca ttgcacaagt attattctta caaggtgatg aaaaatgtga
     9301 tacaacctat aaggataaaa aaggcaagta tcaagctcaa acgggtataa ccttgccaag
     9361 aattttaaaa taggaacact tattgcttta attttaaaaa aacttaaaca aaggaaggca
     9421 aaatgtttaa caaaaaaaat atcttaatca caggcggaac aggctctttt ggaaaaacct
     9481 atactaaggt tttattagaa aattataaac ctaataaaat catcatttat tctcgtgatg
     9541 agctcaaaca atttgaaatg gcaagcgttt ttaatgctcc ttgtatgcgt tattttatag
     9601 gggatgtaag agataaagaa cgcttaagcg ttgctatgcg tgatgtggat tttgttatac
     9661 atgctgctgc gatgaagcat gtgcctattg ctgaatataa ccctatggaa tgtatcaaaa
     9721 ccaatatcca tggcgctcaa aatgtgatcg atgcttgctt tgaaaatggg gttaaaaaat
     9781 gtatcgctct tagcacagac aaggcttgca atcctgtaaa tttatacggt gcaaccaaac
     9841 ttgcaagcga caagcttttt gtcgctgcaa acaatatagc aggtaacaaa caaacacgct
     9901 ttggtgttac aagatatggc aatgttgtag gttcaagagg atcggtagta cctttcttta
     9961 aaaagcttat tgagcaaggt gctaaagaac ttcctatcac cgatacaaga atgactcgtt
    10021 tttggatcag ccttgaagat ggagtgaaat ttgtactgag caattttgca agaatgcacg
    10081 gaggagaaat tttcatccct aaaattcctt cgatgaaaat caccgatcta gctcatgctt
    10141 tagctcctca tttaagtcat aaaatcatag gtatcagagc aggagaaaaa ctacatgaaa
    10201 tcatgatttc aagtgatgat agtcatttaa cctatgaatt tgaaaactac tatgctataa
    10261 gtcctagtat taagcttgta gatcaagaga gtgattttag tatcaatgcc ttgggcgaaa
    10321 aaggacaaaa ggtaaaagat ggtttttctt atagttcgga taataatcct ttatgggcaa
    10381 gcgaaaaaga acttttagaa atcatcaatc acaccgaagg tttttaaaat gcttacttat
    10441 tctcatcaaa acatcgatca aagcgatata gatgcgctta caaaagcttt aaaagatgaa
    10501 attttaactg gaggtaaaaa ggtagatgaa tttgaagaag ccctttgcga atatgtgggc
    10561 gtaaaacacg cttgtgtatt aaactcagct acttcagctc ttcatcttgc ctacacagca
    10621 ctagacatca aagaaaaaat cgttttaacc actcctttaa ccttcgctgc tacagctaat
    10681 gcagccttaa tagctggagc taaggtagag tttatcgaca ttaaaaacga tggcaatatt
    10741 gacgaaaaaa aactagaagc aagactttta aaagatagta aaaatatagg agctattagc
    10801 gtggtggatt ttgggggaaa tagcgttgaa atagatgaaa tttcaagcct tgctaaaaaa
    10861 tacaatatcc ctttaatcga tgatgcaagc catgctttag gtgccttata taaaagtgaa
    10921 aaagtaggaa aaaaagccga tctttctatc ttttcttttc atcctgttaa acccatcact
    10981 acttttgaag gcggggctgt ggtgagtgat aatgaagagc ttatcaccaa aatcaagctt
    11041 ttaagaagcc atggtatcat taaaaaaagg ctttgggata gcgatatgat agaacttggc
    11101 tataattacc gcttaagcga tgttgcttgt gctttaggga taaaccagct taaaaaactc
    11161 gatcacaatc ttgaaaaaag agaagaaatt gcaagttttt acgataaaga atttgaaaaa
    11221 aatccttatt tttccacgat aaaaatcaaa aattataaaa aaagctcaag acatttatac
    11281 cctatcttgc tttttcctga attttattgt caaaaagaag aactttttga aagcttactt
    11341 catacaggaa ttggcgtaca ggtacattat aaaccaactt atgagtttag tttttataaa
    11401 aaactcttag gagaaatcag actccaaaat gcggataatt tttacaaagc cgagcttagc
    11461 ataccttgtc atcaagaaat gaatctaaag gatgcaaaat ttgtaaaaga tactttattt
    11521 agcattcttg aaaaagttaa aaagggatat tgtgaataag ctagacttta gaagccaaga
    11581 ttttagccaa actggaaagg ctatgtatga actagcttgc gaactttttc ctatccctag
    11641 aagcatcaca gggcaaggtt ttagagatag cttagaaatt ttaaataaaa ctctgggggg
    11701 gggtatactc aaatttcact ctataaaaag tggcacaaag gtttttgact ggatagttcc
    11761 tgatgaatgg aatgccaaag aagcctatat catcactcca gaaggagaaa aaatttgtga
    11821 ttttaaaaag cataatttac accttctaaa ttatagcgaa gctatcgata aagaaatcga
    11881 acttgaagaa cttcaaaatc atctttactc catagaagaa atgcccgatg ctattcctta
    11941 tgtaacgagt tattacaaaa gacgttgggg attttgtctc acgcataatg aaagaaaaaa
    12001 actcaaaaaa ggcaaataca aagtctatat caatgcgaaa catgatgaaa atgggatttt
    12061 ggattatgct gattttatcc tacctagtac gcaaaattca aaagatgaaa ttttaatttc
    12121 aacctatctt tgtcatcctt ctatggcaaa taatgagctt agtggtcctg tggtggctat
    12181 tttcctagca aaatggcttt tgagtttaaa agaaagaaag tataattacc gctttgtcat
    12241 cattcctgaa accataggct ctatagtcta tcttagcaaa catttagagc atttaaaaaa
    12301 acatgttaaa gcaggctttg tgctttcttg cttaggtgat gatcatgctt actcactcat
    12361 acacacaccc aaagaaaaca ctctaagcga taaagttgcc ttgcatacgc ttaaaaataa
    12421 agaaaatttc aaagctttta gttttttgga tcgtggaagc gatgaaagac aatacaatgc
    12481 tccgcttgta aatcttggca ttgtaggagt atgtcgcaca agatacctag aatacgaaca
    12541 ataccacacc agcaaagatg atctcaattt tatctctgaa aaaggtttaa tgggtggact
    12601 tcaaagcata caagaaatga ttttaaatct agaaatcaac gccgtatatg aaaacaccat
    12661 agtatgcgag cccaatcttg gcaaaagagg actatatcat acccttagca ctgccaatga
    12721 cattccttta gcttgtaatt ttctagctta ctgtgatgga gagaatgata tcatcgatat
    12781 agccaatatc ttaaatatgc aagcttatga atttaaagaa cttttggaaa aaattttaga
    12841 atataaactt ttaagcataa ttcattaaat ttttagcatg attatcttca atatccttaa
    12901 caattacatc atatgcctta gataaatcga ttttcttaat acaaagattt tcaaattttt
    12961 taagctccat cacattttct tttataaaaa gattttccaa accattaaca tctgttaaaa
    13021 ctccatcttt acgaacaaac atatcataag ttttcagttg cgtaaatcct ttttcgtctg
    13081 tatataaagc ctcaaaactt ttgttaaaac gataatcgac ttttaaacac tcttccacat
    13141 aatgcacaaa agtaaaagaa tcttgcaaag gcaaatttac aataatcatt tttgcattat
    13201 ttttatgcat aaaagcaaaa ggagaattat tatcaaaagc tcccttattc tcaagcacaa
    13261 caagttcttt ttgaaatttt ccagcaaccg caaaagaata aatagggtgt tttgttcttc
    13321 taaaatcatc tcttttaaga gctatattac ctaaagctcc agtttgtgat ttagaattta
    13381 aaatatcata tgccaaacct ttacaaaaat cccaattaaa agtatgaata gctagtgtat
    13441 ctacattatc tttcatacaa tctaataaaa aatttaattt ttttctatta tctccatcta
    13501 tattttgca
//
LOCUS       DBBXRO010000039        12598 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.039, whole genome shotgun sequence.
ACCESSION   DBBXRO010000039 DBBXRO010000000
VERSION     DBBXRO010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12598
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.039"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            5..1387
                     /gene="der"
                     /locus_tag="ACJFEZ_000831"
     CDS             5..1387
                     /gene="der"
                     /locus_tag="ACJFEZ_000831"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HGG0916961.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSEISGTTRDTNKTEV
                     FINSKKALLIDSGGLDESNELFKNVKKNTLKIAKQSDIILYLVDGKLSPDDEDRQFFH
                     SLKKLGKPIALVINKVDNKKDEERSWEFANFGVKEVFNLSVTHNIGLDELYNWLENFL
                     DEQFLIPDEEENLEDFLEHYEEGKEFQFKELDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSN
                     SQIALLVLDANEGFNELDERIAGLAAKHYLGVIIVLNKWDKTEFEFDKVVKELKLDRF
                     KFLAYAPVVSVSALSGKRVHVLLEKILEVFTNFTQKIPTSKLNDLIASATKAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            1377..1871
                     /locus_tag="ACJFEZ_000832"
     CDS             1377..1871
                     /locus_tag="ACJFEZ_000832"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004765 - shikimate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HGG0916962.1"
                     /translation="MKVKNIIFIGFMGSGKSTIARALAKDLDLVFLDSDGLIEMKFDQ
                     KISEIFKEKGEAFFRQEEQKVANFLCSCNGASIASGGGFIHVLDFDKIGFCIYLKASF
                     EYLKKRLSENEIAKRPLFYDEVQAKRLYNERLNKYEQKANLILDVENKSIDELVIEIK
                     KVIK"
     gene            1868..2827
                     /gene="trpS"
                     /locus_tag="ACJFEZ_000833"
     CDS             1868..2827
                     /gene="trpS"
                     /locus_tag="ACJFEZ_000833"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HGG0916963.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIRQMVEAQEKSEMFMFIANYHAM
                     TSSQDGKKLEQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQLVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEAKINEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDFKSCNVFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILELGASKARKIAQEKMQKIYEKIGL"
     gene            2837..4072
                     /gene="serS"
                     /locus_tag="ACJFEZ_000834"
     CDS             2837..4072
                     /gene="serS"
                     /locus_tag="ACJFEZ_000834"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HGG0916964.1"
                     /translation="MLDLKNLQNNFDEVAKKLQNKKVDENILKNLAELFTNLKKEKAS
                     LEEFQAFQNKFSKELATVEDKESLKAKLSENKIKINEQNAKVNALENELETIAHAIPN
                     IPDECVPVGEDEEENVEIKKVLTPPQFDFTPKEHHDLGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNSPTMFGTGQLPKFKDDMYKIED
                     EDLYLISTSEIPVTNLYSGEILTSESLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSIFNEMVECASDLLSSLGLAHRHLMLCTGDLGFSAAKTIDLEV
                     WIPSQNKYREISSVSNCRDFQARRAKIRYKNEKGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGRIQIPDVLKKYF"
     gene            4082..6544
                     /locus_tag="ACJFEZ_000835"
     CDS             4082..6544
                     /locus_tag="ACJFEZ_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0916965.1"
                     /translation="MADKEDIVLEKPEDTLNEPRLDESLGEFKGQEGQAPEDEEFASL
                     PEELPRENSDGGFKFTRESAPEESSTFEEVKEDEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFNEGKVKPDIIASKPIEQPVVMPDESYNYNDMTRVDGMIQKANALYLKGE
                     VEQALKVYEQIAVYNESLSNYNLGVSQMNEGKFDEAFDSFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFKYYIDLAQVYLPKEGKSKLYDYYLALINYYKGYYPEALQMLQRVNS
                     EPYTDVAKYLSAKIYAKMDFDAKSVQQLNTQGSFEPSLSLGLLYARMGEYDKAKIALN
                     TAMKIERDFNQSLSALTLVDIKTGDFQDMLLRLQDTYRNDEDKYKILDRYKIKVRLNK
                     ELFNIAIAQRNFSNDILKKQKDQFDLLFYFAPYQVFDSKQASLYIKKANITNFVDDSS
                     DGQSYLARSQALSSTNVKISNIINDALNQKLRLANKEFQALLEDYPEHSILQYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCGKLSDNDTTKLYHEILDNIAADSN
                     FKANMQKNMLFLANGDYISMLPYLDENGQKTPLNLIFETIIAKNNNLNNQVDVRIAKL
                     RSELPQDIVANILYFNSLNSNLNIKEYAQNAQIHFKNLQVDYRSVFGGSNIARELYVN
                     LMHIAGLLNLERQKFKTLINTSKVKDEGMIQTLAYLDIFAQQYEESYALYNTLIDEYG
                     AKDSRTLFLASVAAVGANNPNSAIALLQLSKLTDKNNKESKVALGLLYQEVGNYEAAM
                     TQYRTLPNDFKSEFFTFDIKNQ"
     gene            complement(6573..7199)
                     /locus_tag="ACJFEZ_000836"
     CDS             complement(6573..7199)
                     /locus_tag="ACJFEZ_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916966.1"
                     /translation="MQINTFSNVASMAQAQVSNKKADGNATENTKDTNVQSANSNQDI
                     LDKLNALGGKGISQIYLVQFQQQTMSTVLNTSNAQAGINDLLGGNDLNSVKSMLSDID
                     FASLGYNGKNPLTMNTDELNQLISEEGFFGIDNTANRIADFVIKGAGNDVEKLKKGLE
                     GIKQGFEQAEKIWGGELPQISQDTIEATIKKVSDRIDELGGKTLDLKA"
     gene            complement(7291..8733)
                     /gene="pyk"
                     /locus_tag="ACJFEZ_000837"
     CDS             complement(7291..8733)
                     /gene="pyk"
                     /locus_tag="ACJFEZ_000837"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HGG0916967.1"
                     /translation="MLKKTKIVATVGPASEKEDVLRQMIINGVNVFRLNFSHGTHEYH
                     KNNLETIRKVSRELNTRVGILQDISGPKIRTGELKTPFELKKGDRLDFYYEKIIGEQI
                     APNHYKLSINQSEILNMLKLDEYVYLYDGSIRAKVTAKDSEKIETLIENDGFLNSNKG
                     INFPNTKINIDVITQKDKKDLLWGIENEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIASSDGIMVARGDLGIEVPYYKVPNIQKAIIHKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDVMCQTI
                     IETEKRYPYNKFNEFENLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKISRYRP
                     DMEIIAVAHSEKTLNSLSIVWGVNPAILVNKSEDLTDLLRDSVKSSVEKGFMNKEKCY
                     LLTAGFPTGVEGTSNLIRILAKEQIAYYLK"
     gene            complement(8785..10131)
                     /locus_tag="ACJFEZ_000838"
     CDS             complement(8785..10131)
                     /locus_tag="ACJFEZ_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HGG0916968.1"
                     /translation="MTQQEFDVIVIGAGISGAALFYELARYTDIKNIALIEKYHAPAT
                     LNSKGTSNSQTIHCGDIETNYTLEKAKKVKRTADMIVKYGLLQNAQNQFMFSHQKMAL
                     AVGDSECEYMKKRHEEFGELYPYMKFFNKDKIKQIEPKVALGENGRDDRPENICAMGV
                     EAGEVFTTVDFGKMSASLVEQGQKQGKNTFVAFNQEIVHIEKKDDIFILKTNTYQEYC
                     SKAVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFSMFKDP
                     TIRNYILYNYLFELPFIDKGLFVKDAKKIVPSLKTSDIYYAKGFGGVRPQVIDKTRGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICEYLGAKFDEDKFASELL"
     gene            complement(10258..10887)
                     /locus_tag="ACJFEZ_000839"
     CDS             complement(10258..10887)
                     /locus_tag="ACJFEZ_000839"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HGG0916969.1"
                     /translation="MLFCDIGNSNASFLDDNKFFTLNIEQFLEFKSEQKIFYINVNEH
                     IKEHLKARKNFINLEPYFVFDTIYQGLGVDRIAACYTIEDGVVVDAGSAITVDIVSNS
                     IHLGGFILPGIANYRKIYAHISPRLKHEFNTQISLDAFPQKTSDALSYGVFKSIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDYAIYDKLLIFRGMKKIIQENPNLLF"
     gene            complement(10874..11161)
                     /locus_tag="ACJFEZ_000840"
     CDS             complement(10874..11161)
                     /locus_tag="ACJFEZ_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HGG0916970.1"
                     /translation="MNILNEAMKVLKLNLKPFDLTNLTKKKTYLCALNDENLLLIYTG
                     KARFINKDAIFINNLANDFDLKYKYFFTKSPLCSKAKHYLEEKGFHIHAIL"
     gene            complement(11158..12156)
                     /locus_tag="ACJFEZ_000841"
     CDS             complement(11158..12156)
                     /locus_tag="ACJFEZ_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916971.1"
                     /translation="MRQFFLISFCLIFLCACGTKRQYFEPSQTDGKLSSNDSLKSSIV
                     DWNTISAKLKNNQVILKNDAIIENFKLDKGYILLAYQEGEFIEADDNGNLKIYNSSHD
                     EVYSYKFDAAVLGVALHGDDLALVLANNSIVLANRSLGIKFSQNLTPAPAQDSRVANP
                     IFLDNIIIYPTLDGKITIVSKNTFEVVKDVVISAESFFNNVIHLDINDDKMIAATAKK
                     VIVVSPARTLYLDADIKDIALDSNALFILEKNGNIIKTDYNLRKITEKKFDFAIFTKV
                     SIHNDHLYAFEKTGYLIKCDLNLENIQIFELPNAVEKISFMGNGKFYYGDKILDLL"
     gene            complement(12153..>12598)
                     /locus_tag="ACJFEZ_000842"
     CDS             complement(12153..>12598)
                     /locus_tag="ACJFEZ_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916972.1"
                     /translation="IIWFTISFISGKIEQYNIEESNKIYTSLLNNPNDQALLEQLKNK
                     NANLYAIFLMKELAKDINNTEIKSQLQSLSSNSDANHLLKNIISLPLGEKSIFLKNYD
                     KILQAYRLLGEGKIEQANILLSQIKDDSALSQIAKNLKHYQGISR"
BASE COUNT         4255 a         1817 c         2168 g         4358 t
ORIGIN      
        1 acaaatgcaa agcatcatac ttataggtaa gccaaatgtt ggaaaatcaa gtttatttaa
       61 cagaatggca aggcaaagaa tagctattac aagtgaaatt tcaggtacta caagagatac
      121 caataaaaca gaagttttta taaattctaa aaaagcccta ttgattgata gtggtggtct
      181 tgatgaaagc aatgagcttt ttaaaaatgt taaaaaaaac actctaaaaa ttgcaaaaca
      241 aagtgatatt atcctttatt tggttgatgg aaaactaagt cccgatgatg aagataggca
      301 attttttcat tctttaaaaa aattaggaaa gcctattgct ctagtaatca acaaagtgga
      361 taataaaaaa gatgaagaaa gatcgtggga atttgctaat tttggtgtaa aagaggtttt
      421 taatctttct gttactcata atatagggct agatgagctt tataattggc ttgagaactt
      481 tttagatgaa caatttttaa tccctgatga ggaagaaaat ttagaagatt ttttagaaca
      541 ttatgaagag ggaaaagaat ttcagtttaa agaactcgat caaaatcata tcagagtggg
      601 tatagtaggg cgtgttaatg tcggaaagtc aagcctttta aatgctttgg taaaacaaga
      661 gcgcagtgtg gtgagttcta ttgcgggaac gacaattgat cctgttaatg aaagcatagt
      721 ttataaggat aaagtgatag aatttgttga tactgcaggt attagaaagc gaggtaaaat
      781 tcaagggctt gagcgttttg cattaaaccg cacagaaaag attttatcta attctcaaat
      841 cgcacttttg gttttagatg ccaatgaagg ttttaacgag cttgatgaaa ggatagctgg
      901 acttgcagca aagcattatt tgggcgtgat tattgtatta aataaatggg ataaaactga
      961 atttgaattt gataaagtgg taaaggaatt aaaacttgat cgctttaaat ttttagctta
     1021 tgcgcccgtt gtcagtgttt ctgctttgag tggaaaaaga gtacatgttt tattagaaaa
     1081 aattttagaa gtctttacta attttacaca aaaaattcca acctcaaaac ttaatgattt
     1141 aatcgcaagt gcgactaagg ctcatccttt accgcatgat tatggaaaat tggtaaaaat
     1201 ttattatgca gtgcagtatg atttagcacc tcctaaaatc gcacttatta tgaatagacc
     1261 taaggctttg cattttagtt ataagcgtta tttacaaaat caaatcagaa aagaatttaa
     1321 ctttgaaggt gttcctttag tcattgcttc gcgcaaaaaa ggaagcaagg aaaatgatga
     1381 aagttaaaaa tattattttt attggtttta tgggtagtgg aaaaagtact atagctagag
     1441 ctttggctaa ggatttagat cttgtttttt tagatagtga tggtttgatt gagatgaaat
     1501 ttgatcaaaa aatcagtgaa atttttaaag aaaagggcga ggcttttttt agacaagaag
     1561 agcaaaaagt agcaaatttt ctttgctctt gtaatggagc ttctatagct agtggcggag
     1621 gttttataca tgttttggat tttgataaaa taggtttttg tatttattta aaagcaagtt
     1681 ttgaatatct aaaaaagcgt ttaagcgaga atgaaattgc taaaagacct ttattttatg
     1741 atgaagttca agcaaaaaga ttatataatg agcgtctaaa taaatacgag caaaaagcga
     1801 atttgatttt agatgttgaa aataaaagca ttgatgagct tgtgatagaa ataaaaaagg
     1861 tgataaaatg agagtattaa caggacttca gccaagtgga gatttgcaca taggtaatta
     1921 ttttggtgct ataaggcaaa tggtggaggc tcaagaaaaa agtgaaatgt ttatgtttat
     1981 agcaaattat catgctatga cttcaagtca agatggaaag aaattagagc aaaattcact
     2041 caaagctgct gcggcttttt taagccttgg tatagatcct caaaaaagcg ttttttggtt
     2101 gcaaagtgat gttaaggaag ttatggagct ttattggatt ttatcgcaat ttactcctat
     2161 gggtttatta gagcgtgcgc atagttacaa ggataaagtt gctaaggggc ttagtgcttc
     2221 acacggactt ttttcttacc ctgttttaat ggcagcagat attttgcttt tcgatactca
     2281 acttgtgcca gtaggtaagg atcaaattca gcatgttgaa atagctcgcg atattgcctt
     2341 aaaagtaaat aatgaatggg gtgaaatttt taccttgccc gaagccaaga taaatgaaga
     2401 agtagctgta gttgtgggta ctgatggagc aaaaatgagt aaatcttatc aaaatactat
     2461 agatattttt agcagtgaaa aaaccttaaa aaaacaaatt tcttccatag taaccgatag
     2521 taccgcttta gaagatccaa aagattttaa aagctgcaat gtttttaaaa tcgcaaagct
     2581 ttttttagat gaatcagggc aaaaagaatt gcaaatacgc tatgaaaaag gtggtgaggg
     2641 ttatggacat tttaaaatgt atttaaacga gcttgtaaat gcttatttta aagaagcaag
     2701 agaaaaatac aatgagcttt tagaaaagcc ttcgcattta aaagaaattt tagaattggg
     2761 tgcaagcaag gctaggaaaa ttgctcaaga aaaaatgcaa aaaatttatg aaaaaatagg
     2821 actttaagga gtaaaaatgc ttgatttgaa aaatttacaa aataatttcg atgaggtggc
     2881 taaaaagcta caaaataaaa aagtagatga aaatatatta aaaaatcttg ccgagctttt
     2941 tacaaatttg aaaaaagaaa aagcgagttt ggaagaattt caagcttttc agaataaatt
     3001 cagtaaagaa ctagccactg tagaagataa ggaaagtttg aaggcaaaac tcagtgaaaa
     3061 taaaattaaa atcaatgagc aaaatgcaaa agtaaatgct ttggaaaatg agttagaaac
     3121 cattgctcat gctattccaa atatccctga tgaatgcgtt cctgtgggtg aagatgagga
     3181 agaaaatgtt gaaataaaaa aagttttaac accccctcaa tttgatttta ctccaaaaga
     3241 acaccatgat ttaggagaga gtttaaactg gcttgatttt gtgcgagggg taaaaatttc
     3301 acaaagccgt ttttgtgtgc ttaaaaatga aggagctttg ctaagccgtg ctttggtaaa
     3361 ttatatgata gattttaacc gaagtcgtgg gtttgaattt gtaaatgtgc cttttttggt
     3421 aaatagtcct acgatgtttg gcacaggaca gcttcctaaa tttaaagatg atatgtataa
     3481 gatagaggat gaggatttgt atttaatctc aacttctgaa attcctgtga caaatcttta
     3541 tagtggagaa attttaacga gtgaaagttt gcctattaaa atgacttgct atagtgcttg
     3601 ttttagaaaa gaagcaggaa gtgcagggcg tgacacaaga ggcattatcc gtcagcatca
     3661 atttgaaaaa gtagagcttg tgagcattac caaacctgaa caaagtgaca gtatttttaa
     3721 tgaaatggta gaatgtgcaa gtgatttact cagctcttta ggtttagctc atagacattt
     3781 gatgctttgt accggagatc taggttttag cgcggcaaag actatagatc ttgaggtatg
     3841 gataccatcg caaaataaat atcgcgaaat cagttctgtt tctaattgtc gtgattttca
     3901 agcaaggcgt gcaaaaattc gctataaaaa tgaaaaaggg aaaaatgaat tagttcatac
     3961 tttaaatggc tcttctttag cagtaggtag aactttggtt gctattatgg aaaattatca
     4021 agataaagag ggtagaattc aaattcctga tgtattgaaa aaatattttt aaagagtata
     4081 aatggcagat aaagaagata tagttcttga aaaacccgaa gatactttaa atgaaccaag
     4141 acttgatgaa agtttgggtg aatttaaagg gcaggaaggt caggctcctg aggatgaaga
     4201 atttgcatct ttaccagagg aattgcctag ggaaaatagt gatggcggtt ttaaatttac
     4261 aagagaaagc gcaccggagg aatcatcgac ttttgaagag gtgaaagaag atgagcctac
     4321 tccatggtat aaagatcgta aatttatgtc tcttgtgggc ttgtctttgg gaatcatttg
     4381 tattttggta tttactttat tttatttaac ttttaatgaa gggaaggtta agcccgatat
     4441 tatcgcatca aagcctattg aacagcctgt ggttatgcct gatgaatcct ataattataa
     4501 tgatatgaca agagttgatg ggatgataca aaaggcaaat gcgctttatt taaagggtga
     4561 agtggagcaa gctttgaagg tttatgagca aattgccgtt tataatgaat ctttgtctaa
     4621 ttataaccta ggggtttctc aaatgaatga gggtaaattt gatgaagcct ttgatagttt
     4681 taaaaaggca atagctaatg gagaaaatca aagtgtggca gctattaatg ctgctgtttg
     4741 cgctttaaag cttaatgata aggaaaaatt taaatattat atagatttag cgcaagttta
     4801 tcttcctaaa gaaggaaaat ctaaattgta tgattattat ttggctttaa ttaattatta
     4861 taagggttat tatcccgaag ctttgcaaat gcttcaacgc gtaaattcgg aaccttacac
     4921 agatgtagct aaatatttat ccgctaaaat ttatgcaaag atggattttg atgcaaaatc
     4981 tgttcaacaa ttaaatactc aaggaagttt tgaacctagc ctttctttgg gacttttata
     5041 tgcaagaatg ggagaatacg ataaggctaa aatagcctta aatactgcaa tgaagatcga
     5101 aagagatttc aatcaaagtc tttcagcttt aactttagtt gatattaaaa caggagattt
     5161 tcaagatatg ttattgcgtt tgcaggatac atatagaaat gatgaagata agtataaaat
     5221 tttagataga tataagatca aagttcgttt aaataaagaa ctcttcaata tagccatagc
     5281 gcagagaaat ttttccaatg acatcctaaa aaaacaaaaa gatcagtttg atttactttt
     5341 ttattttgcg ccttatcaag tttttgactc aaaacaagca tcactttata taaaaaaagc
     5401 caatattaca aattttgtag atgatagttc agatggtcaa agctatttgg ctaggagtca
     5461 agccttatct tcaactaatg taaaaatttc taacattatc aatgatgcat taaatcaaaa
     5521 attaagactt gcaaataaag aattccaagc tttattggaa gattatcctg aacatagtat
     5581 tttacaatac aatcttgctt taacttatgc acaaatgcaa aattatgaac ttgcttataa
     5641 gcatttttct agctcttatc atttaaatcc taaaaattat ttagccggtg cttttgcgat
     5701 gttttgcgga aaattaagtg ataatgatac aaccaaactt tatcatgaaa ttcttgataa
     5761 tattgcagca gattcaaatt ttaaagccaa tatgcaaaaa aatatgctat ttttagctaa
     5821 tggtgattat atttctatgt tgccttattt ggatgagaat ggacaaaaaa cacccttaaa
     5881 tcttattttt gaaactatta ttgcaaaaaa taataatctt aacaatcaag tagatgtaag
     5941 aattgccaaa ttaagatcag aacttccgca agatattgtg gcaaatattt tgtattttaa
     6001 ttctttaaat tcgaatttga atattaaaga atatgctcaa aatgcccaaa ttcattttaa
     6061 gaatttgcaa gttgattacc gcagtgtttt tggaggttca aatattgcta gggaattgta
     6121 tgttaattta atgcatattg caggattgtt aaatttagaa agacaaaaat ttaaaacctt
     6181 gattaatacc tctaaggtta aagatgaggg tatgatacaa actttagctt atttggatat
     6241 ttttgcgcag cagtatgagg aatcttatgc tttgtataat actctaatcg atgaatatgg
     6301 agcaaaggat tctaggactt tgtttttagc ttctgtagct gctgtgggtg cgaataatcc
     6361 aaactcagcc attgctcttt tgcaactttc aaaactcaca gataagaata ataaagaaag
     6421 taaggtagct ttaggtttgc tttatcaaga agtaggtaat tacgaagcgg caatgacgca
     6481 gtatagaact ttgcctaatg attttaagag tgaatttttt acttttgata ttaaaaatca
     6541 ataaggtgct tggtatagtc caaacacctt tgtcatgctt taaggtctaa agtttttcca
     6601 ccaagttcat cgatacgatc gctaactttt tttattgtag cttcgattgt atcttggctg
     6661 atttgaggaa gctctccgcc ccaaattttt tctgcttgct caaacccttg ttttatacct
     6721 tctagtccct ttttaagctt ttcaacatcg tttccagcac ctttgatgac aaaatcagca
     6781 atgcgatttg ctgtattgtc aataccaaaa aatccctctt cactgatgag ctgattgagt
     6841 tcatcagtat tcattgtaag tggatttttt ccattataac ctaaagatgc aaagtcaata
     6901 tctgaaagca tagactttac agaatttaaa tcattgcctc ccaaaagatc attaattcca
     6961 gcttgagcat tgcttgtgtt taaaacagta ctcatggttt gttgctgaaa ttgcacaaga
     7021 taaatttgac taataccctt accgccaagt gcattgagtt tgtctaggat atcttgattt
     7081 gaattggcac tttgaacatt tgtgtctttt gtattctctg tagcgttacc atctgccttc
     7141 ttattgctaa cttgagcttg tgccatacta gcgacatttg aaaaagtatt gatttgcatt
     7201 tctgctcctt tttataatga ggctaattgt atatcgacta tttttaatta aattttagaa
     7261 gtggatttaa atagacttaa aaatttaagt ctatttaaga tagtaagcaa tttgctcttt
     7321 tgcaagtatg cgtataagat tgcttgtgcc ttctactcca gttggaaagc ctgcagtgag
     7381 caaatagcac ttctctttat tcataaaacc tttttcaacg ctagatttta cagaatctct
     7441 aagtaaatcc gttaaatcct cgcttttatt aaccaaaatg gcaggattga caccccaaac
     7501 tatacttaaa gaattcaatg ttttttcaga atgagccact gctataatct ccatatctgg
     7561 acgatatctt gaaattttaa tagcggattt tccactacta gtcaaggaaa aaatagcatc
     7621 agcattaaga tctgttgcaa gatgggctga agagcgcatg attttatctg tattgtcaag
     7681 attttcaaat tcattaaatt tgttataagg atagcgcttt tcagtttcta tgatggtttg
     7741 acacatgaca tcaactgcat tggctggatc tatacctacc gcactttctt cgctaagcat
     7801 tacagcatct gtcccatcta aaacagcatt agcaacatct gaaatttcgg ctcttgtagc
     7861 agttttgctt tttgcaagag aaaaaagcat ttgtgtagct gttataacag gttttgaagc
     7921 attattggct ttgtgaataa ttgctttttg tatattaggt actttatagt aaggaacttc
     7981 tataccaaga tctccacgcg cgaccattat accatcacta gatgctataa tttcatctat
     8041 attttcaact gcgtcaaatt tttctatttt tgcaaatata gaaattttag cattattttg
     8101 agctaaaatt tcacgaactt catcaatatc atgagcattt tgaacaaaag aaatagctag
     8161 gaaatctact tcattttcta taccccaaag taagtctttt ttatcttttt gtgtgataac
     8221 atcaatattg attttagtat ttggaaaatt aatacccttg tttgaattta aaaaaccatc
     8281 attttctatg agagtttcaa ttttttcact atctttagca gtcacttttg ccctgattga
     8341 accatcatat aaatagacat attcgtctaa ttttagcata tttaaaattt cgctttgatt
     8401 gatgctaagt ttataatgat ttggagcaat ttgttcgcct atgatttttt cataataaaa
     8461 atcaagtcta tcaccttttt taagctcaaa aggagttttc agctctcctg tgcgaatttt
     8521 tggcccgctt atatcttgta aaattcctac gcgagtgtta agttctcttg aaactttgcg
     8581 tatggtttca agattgtttt tgtggtattc atgtgttcca tgagagaaat ttaaacgaaa
     8641 aacatttacg ccattgatta tcatctggcg taaaacatct tccttttcgc ttgctggccc
     8701 aactgtagct acaattttag ttttttttag cacgctgttc tccttttttt gtttaattat
     8761 aatcaaactt tggaaacaaa aagactacaa taattctgaa gcaaatttat cctcatcaaa
     8821 tttagctcct aaatactcgc atataagctt agcatctctt tcagcattgc ctaaacagct
     8881 tgttgctcca ggacttggag tcatattaaa aataattccg ggagtttcgg taatgcttgc
     8941 ttcacctagc attaattctc ctctagtttt atcaatgact tgaggacgca ctcccccaaa
     9001 gccttttgca taataaatat cacttgtttt taagctaggg actatttttt tggcatcttt
     9061 tacaaataaa cctttatcaa taaaaggtaa ttcaaaaaga tagttataaa gtatataatt
     9121 tctaatcgtt ggatctttaa acatactaaa agtaaccttt aagacggttt tgtcaagttt
     9181 taaggcttca aagaattcag ggacagattt taaaccatgg tagcgttcaa gttttggaat
     9241 aactagggca gtagggccaa aacgagtatt catatctgca agcaagtcag gatctccatg
     9301 aagagctgca aaaggtagtt ttggattttg caccatatag actttaccat tgagtagttt
     9361 ttgtttggtt aaataaaagc ttcccgctac aggccaacaa gatttatcca tacccaaatt
     9421 cattttatgt gctagataca aagaatgtgc accagcattt acaactacag ccttagaaca
     9481 gtattcttga taagtgtttg ttttcaagat aaaaatatca tcttttttct ctatatgaac
     9541 aatttcttga ttgaaagcta caaaggtatt tttgccttgt ttttgtcctt gttcaaccaa
     9601 acttgcactc atttttccaa aatctactgt agtaaaaact tctccagctt cgactcccat
     9661 agcacagata ttttcaggtc tatcatctct gccattttct ccaagagcta ctttaggctc
     9721 aatttgttta attttatctt tattaaaaaa tttcatataa ggataaagtt cgccaaattc
     9781 ttcatggcgt tttttcatgt attcgcattc tgaatcacca acagccaagg ccattttttg
     9841 atgagaaaac ataaattgat tttgagcatt ttgcaaaagc ccgtatttta ctatcatatc
     9901 agcagttctt ttaacttttt tagctttttc tagagtatag tttgtttcga tatctccaca
     9961 atgaatagtt tgagaattgc ttgttccttt agaatttaat gttgcaggag catgatattt
    10021 ttctattaaa gcaatatttt taatatcagt atatcttgca agctcgtaaa atagagctgc
    10081 tccagaaatt cctgctccga tgacaattac atcgaattct tgttgagtca ttttttttcc
    10141 tttttttgct tctagtaaag ttaatttttc taaataaaag tgtaatccaa tttattttat
    10201 aaaaagttaa atttgattga agaatataca gaatgagaat ttttgtaaca ttacaaatta
    10261 aaaaagtaga ttcggatttt cttgtataat cttcttcatt cctctaaaga tgagaagttt
    10321 atcgtaaata gcataatcaa aataatttgc taaaaactgc ccatctccac ctgtaaaata
    10381 aagtttttta ttttgcgcag catcttttat aagcaaataa atacttttaa acactccata
    10441 acttagagca tcgcttgttt tttgcgggaa ggcatcaaga ctgatttggg tattaaactc
    10501 atgttttaat ctaggagaaa tatgagcata aatttttcta taattagcaa tacccggtaa
    10561 gatgaaacct cctaaatgta tggaatttga tactatatct accgtaattg cactgccagc
    10621 atctaccaca actccatctt ctatagtgta acaagctgcg attcgatcta cacccaagcc
    10681 ttgataaatg gtatcaaata caaaataagg ctcaagattt ataaagtttt tgcgtgcttt
    10741 taaatgttct ttaatgtgct cattaacatt gatataaaaa attttttgtt cacttttaaa
    10801 ttctaaaaat tgttctatat taagggtaaa aaatttatta tcatctaaaa aactagcatt
    10861 ggaattgcca atatcacaaa atagcatgaa tatgaaatcc tttttcttca aggtaatgtt
    10921 ttgcctttga gcacagaggg cttttagtaa aaaaatattt gtattttaga tcaaaatcat
    10981 tggctaagtt gtttataaat atagcatctt tgttgataaa tcttgctttt cctgtgtata
    11041 ttaaaagtaa attttcatca ttcaaagcac aaagataagt tttctttttt gttaaatttg
    11101 ttaaatcaaa aggttttaaa ttcagcttta aaaccttcat tgcttcattt aaaatattca
    11161 taataaatct aaaattttat ctccataata aaactttcca ttgcccataa aagatatttt
    11221 ttcaactgcg tttggaagtt caaagatttg aatattttca agattgagat cacatttgat
    11281 taaatagcct gttttctcaa aagcgtaaag atggtcattg tgtatgctaa cttttgtaaa
    11341 gatagcaaaa tcaaattttt tctctgtgat ttttcttaga ttatagtctg tttttataat
    11401 gttgccattt ttttctaata taaatagcgc attgctatct agtgcaatat ctttaatatc
    11461 agcatccaag taaagagttc tagcagggct tactactata acttttttag ctgttgcagc
    11521 tatcatttta tcatcattta tatcaaggtg aatgacattg ttaaaaaaac tttctgctga
    11581 aatcacaaca tctttgacaa cttcaaaagt attttttgat acgattgtaa ttttcccatc
    11641 taaagttgga taaataatga tattgtctaa aaagatagga tttgcaacgc gactatcttg
    11701 tgcgggtgca ggtgttaggt tttggctgaa ttttatacct agggagcgat tggctaaaac
    11761 aatgctattg tttgctaaaa caagtgctaa atcatctcca tgtaaagcta ctccaagaac
    11821 tgcagcatca aatttgtaag aataaacttc atcatgagaa ctattgtaaa tttttaaatt
    11881 tccattatca tctgcttcga taaattcacc ctcttgatat gctaaaagta tatagccctt
    11941 atctagttta aaattttcaa ttattgcatc attttttaaa attacttgat tgtttttgag
    12001 ttttgccgaa attgtattcc aatccacaat actagatttt aagctatcgt tagaacttag
    12061 ctttccatcg gtttgtgaag gttcaaagta ttgtctttta gttccacaag cgcaaagaaa
    12121 aataagacaa aatgagatta aaaaaaactg tctcatcggg aaatgccttg atagtgtttt
    12181 agatttttag caatctggct tagggctgag tcatctttaa tttgagaaag taaaatatta
    12241 gcttgttcga tttttccctc tcctaaaagt ctataagctt gtaaaatttt atcgtaattt
    12301 tttaaaaata tcgatttttc tcctagagga agagaaataa tatttttaag caaatgattt
    12361 gcatcagaat tgctacttaa gctttgcaac tgacttttaa tctcggtatt gttgatatct
    12421 tttgctaatt ctttcattag aaaaattgca taaagattag catttttatt tttaagttgt
    12481 tcaagaagtg cttgatcgtt tgggttgttt aataaacttg tgtaaatttt attgctttct
    12541 tcgatattgt attgttcgat tttaccactg ataaagctta tagtaaacca aataatca
//
LOCUS       DBBXRO010000040        12583 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.040, whole genome shotgun sequence.
ACCESSION   DBBXRO010000040 DBBXRO010000000
VERSION     DBBXRO010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12583
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.040"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..2149)
                     /locus_tag="ACJFEZ_000843"
     CDS             complement(<1..2149)
                     /locus_tag="ACJFEZ_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HGG0916973.1"
                     /translation="MDIFKKYTSEIQAIFEGKNYNEHSFRTCFENLLNELKAKEVKII
                     HEPKSEKGQGSIRPDFKTYKLIDKEKELSYNHLVGFIECKNLDVDLNLHLKGKQLSKY
                     LQISPNIIFTNYKRFILFSFEKVVFDIDLLDDKLDLKEENISIFRNLLKAYFDDNSTT
                     IKSKQELVKVLSTQSFYLSNALKISFDESDANSSFKRFFRKTKDTFKNIEKIDLKDEE
                     FCDILAQAIVYGIFVSYIENDDYDLEKIPIENFISFLPSTFRTLSEFVYFAIPSFSLP
                     QDIKYTLENIKKTLSLIDKIALCKILNQDLESVSIYLYEDFLKAYDDLRATQKRKEGG
                     VFYTPKSIVDMIVSSLDELLKTKLNKNKGFNDQGVKVLDFATGTGSFLASVFEKIISK
                     ESEVFKNEAIKNKFLKDIYGFELSFVPYIVARLKLGQILRKNGFVNFSDADFQIFLNN
                     TLDLEKIANFDMFMPLENLDTEWKKARDVKHSQDLLVILGNPPYNVKSKNKGEDILEL
                     LKIYKQGLNDKNIQSLNDDYIKFMRFAQWKLLEQNKKDLFEEKKGLLGFITNNSFING
                     KTHRKMRESLYKSFDEIYILNLHGSDKDAKNDENVFDIKVGVCISLFVKYKDEPSNGA
                     KVFYYSTGDNNIFSRKEKFALLDDVRQKGLNAIKWEELSLDEPYFWFIKREFKNKEYE
                     NFWALASDKAEDKKSIFLNYSSGIQTEKDNIAIQ"
     gene            complement(2158..3258)
                     /gene="dapE"
                     /locus_tag="ACJFEZ_000844"
     CDS             complement(2158..3258)
                     /gene="dapE"
                     /locus_tag="ACJFEZ_000844"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HGG0916974.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKKGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWKNDPFEPLEEEGFIYARGAQDMKSGVA
                     AFVDAVKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHAAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLRLMFNVRNSPDTNLEDVRAYVEKICHGLNYELE
                     LTQSSEPFLTSIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSVEEFEKLCLVFKDLVENFN"
     gene            complement(3264..3866)
                     /locus_tag="ACJFEZ_000845"
     CDS             complement(3264..3866)
                     /locus_tag="ACJFEZ_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HGG0916975.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLKKKNEDLHLDQHKD
                     FKESLLKSYVKGIILNGSNPYVIGFWLSATGIVLSNQHAYSTILGLVVAILFWIGALA
                     FVVAKYSYLFSAKVIRIINIVSALIIEYFALSLLYKTFIG"
     gene            complement(3859..4560)
                     /locus_tag="ACJFEZ_000846"
     CDS             complement(3859..4560)
                     /locus_tag="ACJFEZ_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HGG0916976.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISVGTSGAVLPVGRYASMCEKSILNIYEKDANLERYFDKIYTEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(4603..8697)
                     /locus_tag="ACJFEZ_000847"
     CDS             complement(4603..8697)
                     /locus_tag="ACJFEZ_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HGG0916977.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLNKNSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNESF
                     YQNYLNTYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLVDMMDFEKVEFNKAISLNPSNSTQSEMSNPFINSKFELVRLKDFVLDIQTAKRPSG
                     GVGKYENGALSLGGEHIDNKSGYIKLDNPKYVPIEFYESFALQDKGIVKQFDILICKD
                     GALTGKIAMVRNEFIRKSAMINEHIFLLRCDNIAKQKYLFYILHSYSGQQALKSKITG
                     SAQGGINKTNLESILIPNADFEIQKQIVAECEKVEEQYNTIRMSVEEYQNLIKTILQK
                     CGIIDDGGGYELNSILENLQKLESKLDFNLLLSLIEEQISHSEVLVEETQSKERKQDF
                     NAFKNFSKTIQELLQTLSTPPKDGWKRISLKNEQYIELNPSKKEISKLDENMLVSFIE
                     MASVSDKGYIQSKIDRSLNEVRKGYTYFIENDILIAKITPCMENGKCAIAKNLTNNIG
                     FGSTEFHIFRAKTGLDSSFLFYNLNQQNIREKAALAMTGASGHKRVPISFYENLTIPL
                     PPLEIQEKIVQNIELVEQQIDFLNLKLELLEKEKEKILQKYLFS"
     gene            complement(8706..10913)
                     /locus_tag="ACJFEZ_000848"
     CDS             complement(8706..10913)
                     /locus_tag="ACJFEZ_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HGG0916978.1"
                     /translation="MNEIKEELLLKLDLNTYLYEFKSCFARDKEIFLQGDSHLHFKRI
                     NELCETEFPNLPELSNLDKALVHLSKQGVLHLDEIFEFVKIFRYFEKIKKLNLGSNLN
                     SWLEKIEFVNGILDLCEKFDEKGELKESLDERLVNINTALRLKNESIIAEFKKFCYTK
                     ALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDIE
                     KIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVLC
                     DQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKHL
                     LPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDEI
                     ELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEELS
                     RPKYEFLKGTIGKSYAFETALRYQIPPNLVGEAKKLYGEDKENLEELVGKNINLELEL
                     KAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLKD
                     MKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESDG
                     IKLRVPLKLLKKSTPTPKISPKTSISVTKPSNLSVSLDLHGLRSDEAIARLDKFISDA
                     LIAGFDEVLIYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(10906..11256)
                     /locus_tag="ACJFEZ_000849"
     CDS             complement(10906..11256)
                     /locus_tag="ACJFEZ_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916979.1"
                     /translation="MSRFFLYLLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINISKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIRDCRLNDE"
     gene            complement(11249..12547)
                     /gene="murC"
                     /locus_tag="ACJFEZ_000850"
     CDS             complement(11249..12547)
                     /gene="murC"
                     /locus_tag="ACJFEZ_000850"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HGG0916980.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIECLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYTQFLDVAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGRYK
                     KITAIFEPHRYTRLATNLKEFAKAFEGVDELVILPVYAAGEEPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
BASE COUNT         4063 a         2239 c         1551 g         4730 t
ORIGIN      
        1 gctgtatggc tatattatct ttttcagttt gaattccact actataattt aaaaatatag
       61 actttttatc ctctgcctta tcgcttgcta acgcccaaaa attttcatat tctttatttt
      121 taaattctct tttgataaac caaaaataag gctcatctaa gctcaattct tcccatttga
      181 tagcatttaa acccttttgt cttacatcat ccaaaagagc aaatttttcc tttcttgaaa
      241 aaatattatt atcacctgta gagtagtaaa ataccttagc accattactt ggttcatctt
      301 tatactttac aaacaaactt atacaaacac ctacttttat atcaaaaaca ttttcatcat
      361 tcttagcgtc tttatcgctc ccgtgtaaat tcagtatata aatttcatca aaacttttat
      421 acaagctttc tctcattttt ctatgagttt ttccatttat aaaagagtta tttgtgataa
      481 aacctaaaag tccttttttt tcttcaaata aatctttttt gttttgctct agcaatttcc
      541 actgtgcaaa acgcataaat ttaatataat catcatttaa agattgtata tttttgtcat
      601 ttaagccttg tttgtaaatt tttaaaagct ctagtatatc ttcgcctttg tttttgcttt
      661 ttacgttata aggaggattt cctaaaataa caagcaaatc ttgactgtgt ttaacatctc
      721 ttgctttttt ccactctgta tctaaatttt ccaaaggcat aaacatatca aaatttgcaa
      781 ttttttctaa gtccaaagta ttgttaagaa aaatttgaaa atcagcgtca ctaaaattta
      841 caaagccatt ttttcttaaa atttgtccta gttttaacct tgctacaata taaggcacaa
      901 aagaaagctc aaaaccataa atatctttta aaaatttatt ttttatggct tcatttttaa
      961 aaacttcact ttctttggaa ataatttttt caaaaacact agctaagaag cttcctgtgc
     1021 ctgtagcaaa atcaagtact tttacgcctt ggtcattaaa acctttattt ttattcaatt
     1081 tagtttttaa aagttcatca agagaagaaa ctatcatatc cacaatactt tttggagtgt
     1141 aaaaaacacc cccttctttg cgtttttgcg tagctctcaa atcatcataa gcctttaaaa
     1201 aatcttcata caaatatata cttacacttt ctaaatcttg atttaaaatt ttacaaagtg
     1261 caattttatc tatcaatgat aaagtttttt tgatattttc taaagtatat ttgatatctt
     1321 gcggaagaga aaaagaaggt atggcaaaat acacaaattc acttaaagtt ctaaaagtgc
     1381 ttggtaaaaa tgaaatgaaa ttttctatgg ggattttttc taagtcataa tcatcatttt
     1441 ctatgtaaga aacaaaaatt ccatatacta tagcttgagc taaaatatcg caaaattctt
     1501 catcttttaa atctatcttt tctatatttt taaaggtatc ttttgttttt cgaaaaaatc
     1561 ttttaaaaga agaatttgca tcactttcat caaaagaaat ttttaaagca ttgcttaaat
     1621 aaaaactttg cgtacttaaa acttttacta attcttgttt tgattttatg gtggtgctat
     1681 tatcgtcaaa ataagcttta agaagatttc taaatatgct tatgttttct tcttttaaat
     1741 caagcttatc atctagcaaa tcaatatcaa aaacaacttt ttcaaaagaa aaaagtataa
     1801 agcgtttata gtttgtaaag atgatattgg gtgaaatttg caagtatttg ctaagttgtt
     1861 ttccttttaa atgtaaattt aaatctacat ctaaattttt acactctata aagcctacaa
     1921 gatgattata gcttaactct ttttctttat ctataagttt ataagtttta aaatcaggtc
     1981 ttatagagcc ttgccctttt tcactttttg gctcatgaat aattttaact tctttagctt
     2041 ttaattcgtt gagtaaattt tcaaaacaag ttctaaagct atgctcatta taattttttc
     2101 cttcaaaaat cgcttgaatt tcgcttgtat attttttaaa tatatccata acttttccta
     2161 gttaaaattc tccaccaaat ctttaaaaac aagacaaagt ttttcaaatt cttccacgct
     2221 cactctctca tcaatagcgt gaattctgtc attgcaaacg ccaaattcaa ccaccttaac
     2281 gccatatttt gcaaaatatc tcgcatcgct tgtgccacct ttggtattga gctctggtac
     2341 ttcatgagtg attttttgca cgctttcatt catcttttgt acgattttat tgtcaatgct
     2401 tgttaaaaaa ggttcgcttg attgcgttaa ttctagctca taatttaagc cgtggcaaat
     2461 tttttccaca taagctctta catcttctaa atttgtatca ggagaattgc gaacattaaa
     2521 cataagtctt aaatcatttg gagtaacatt acacaccccc atacctccgc gaatatcagt
     2581 tataacgatt tttgaagggc taaattcagc actacctgga tcaagatcaa aacccgctaa
     2641 aagttttaaa accggtgcga aatcatgcac aggattgata catttttcag ggtaagccgc
     2701 atgtccttgt tttccgcgta tcaaaagctt accattgata gaaccacgac ggcctatttt
     2761 aatactatcg ccgatttttt taacacaggt tggctctgca accacagcat aatcaggtag
     2821 catatctctt tcttgcatcc attctaaaac agccttagtt ccatatatag cttcgccttc
     2881 ttcatcactt gttaaaataa gactcagtct tgctccttta aaatccgcat tctttaccgc
     2941 atccacaaag gctgctactc cgcttttcat atcttgagca ccccttgcat agataaagcc
     3001 ttcttcctcc aaaggctcaa aaggatcatt tttccaaccc tcacccgcag gaacgacatc
     3061 tacatgccca ccaaaagcta aatgctcgcc ttcatcttta aattttttag tgagtaaaag
     3121 gtttttaatg cctttttttt ctataaaaaa agcttcaaaa tcactcagtt ccatagcgat
     3181 gaaatttaaa gctccatcat catttggcgt aacagattta aattttaaaa gttcgattaa
     3241 aaattctttt gcattcattt tttttatcct ataaaagttt tgtataataa actcagagcg
     3301 aaatactcta taatcaaagc tgaaactata ttgatgatac gaatcacctt tgcactaaaa
     3361 agatagctgt attttgcgac aacaaaagct aaagcaccta tccaaaaaag aatagcaaca
     3421 acaagcccca gtatcgtaga ataagcgtgt tgattgctta aaactatgcc tgtagcacta
     3481 agccaaaaac ctatcacata aggattagag ccatttaaaa tgataccttt aacatagctt
     3541 tttaaaagac tttctttaaa atctttatgc tgatccaaat gcaaatcttc atttttcttt
     3601 tttaacatca aataagccat ataagttaaa aaacaaaaac caaaaatcgc caaaaaacgc
     3661 ataaaaatga cattgtctaa gaaatttaaa agcccaaatt gaagcaaaaa aagataaagc
     3721 atatctatac taaatgctcc aagtcctaca gctatggaat ttttaaaagc ttttagtgca
     3781 taagttaaaa tcaaaatatt tacaggtcca aaaggcacac tcactccaaa gcccaaaaaa
     3841 actccactta aaaaagaatc aaacattgcc atctttcata aaattttcta tatcaagtgc
     3901 gattttatca atagcgctta taatatcttc agtgtagatt ttatcaaaat accgctctaa
     3961 attcgcatct ttttcataga tatttaaaat acttttttcg cacattgaag cataacgccc
     4021 tacaggcaaa accgccccac ttgtgcctac gctgataaaa agcgaagttt gatttagcaa
     4081 agaataaagc gtagcataag caggggcttg ctcttcaaac atgactatat tgtgtcttaa
     4141 atccttactt ttgcattttg gacattgttt atctgtgaat ttttcatagc ctatattaaa
     4201 aattccttca cattttaggc aacgaagttc gggcaaaaat ccatgcaaat gtactacatc
     4261 tttacaccct gcacgctcta gcaaatcatc tacattttgc gtgatgacaa aaaggttttt
     4321 accccatttt tcttttaact gtgcgatttt ttcatgggcg tgatttggct ttacattttg
     4381 aagttgtgcc cttcttgcat cgtaaaaatc aagtactttt ttaggatttt ttctaaaacc
     4441 tgttgcagag caaacctcca tcacatcgta ttcttcccaa agtccatcat tgtctctaaa
     4501 agttttaagc ccgcttggag cagacaaacc cgctccgctt aatatcataa tgtttttcat
     4561 agctaaacct tataaaattt acaaagttta gcgaaaaatg ctttaagaaa ataaatattt
     4621 ttgtaagatt ttttcttttt ctttttctaa caattctaat ttaagattaa gaaaatcaat
     4681 ttgttgttcc actaattcaa tgttttgaac aattttttct tgaatttcta gcggtgggag
     4741 tgggattgta agattttcat aaaaacttat aggaactctt ttgtgtccac ttgctccagt
     4801 catagcaaga gctgcttttt ctcttatatt ttgttgattt agattataga ataagaaact
     4861 gctatcaagc cctgtttttg ctctaaaaat atgaaattct gtgctaccaa aacctatgtt
     4921 atttgttaga ttttttgcga tagcacattt accattttcc atgcaaggag taatttttgc
     4981 aatcaaaata tcattttcta taaaatatgt gtagcctttt cttacttcgt ttaatgacct
     5041 atctatctta ctttgaatat aacccttatc tgaaacacta gccatttcta taaatgagac
     5101 aagcatattt tcatcaagtt ttgatatttc ttttttgcta ggattaagtt ctatatattg
     5161 ttcattcttt aaagaaattc tcttccagcc atcttttggt ggagttgaga gagtttgtaa
     5221 aagctcttgt atggttttag aaaagttttt aaaagcatta aaatcttgct ttctttcctt
     5281 gctttgagtt tcttcaacta atacttcaga atgactaatt tgttcttcaa ttagcgaaag
     5341 caaaagatta aagtcaagtt tagattctaa tttttgcaaa ttttctaaaa tagaatttag
     5401 ctcatacccc cccccatcat ctataatacc gcatttttga agtattgtct tgattaaatt
     5461 ttgatactct tctacactca ttcttattgt gttatactgc tcttctacct tttcacattc
     5521 tgccacgatt tgcttttgaa tctcaaagtc tgcatttggt attaaaatag attctaaatt
     5581 tgttttattg attccgcctt gagccgaacc tgtaatttta gattttaaag cttgttgtcc
     5641 actataagaa tgtaatatat aaaataaata tttttgtttt gctatattat cacaacgcaa
     5701 taaaaaaata tgctcattaa tcattgcaga tttcctaata aattcattac gcaccattgc
     5761 aatttttcca gttaatgcac catctttaca tattaaaata tcaaattgtt ttacaattcc
     5821 tttatcttgc aacgcaaaac tttcataaaa ttctattggt acatacttag gattatctaa
     5881 tttgatatac ccacttttat tgtctatatg ttctccacca agactcagtg caccgttttc
     5941 atatttgccg acaccaccac taggacgctt tgcggtttga atatctaata caaaatcttt
     6001 aagtcttact aactcaaatt tagaatttat aaaaggatta gacatctcac tttgcgttga
     6061 attgctagga tttaaactta tagctttatt aaattccact ttttcaaaat ccatcatatc
     6121 aacaagcctt gcttttgtag cataaatctg caattcttgc gggataacat caagcgtatt
     6181 taaaaaagat ttgtagatta aagtattaag cttagtttca ttttgtggat tgcctctttc
     6241 aaaaagtggg ctcaaataag gctcgtgcaa ttcttttaaa ccttcatcac cttttctatt
     6301 actccactca taacctaaaa atttcttttg ttcttttata tcacttggag attttatgat
     6361 taaaacttct tgattaagac ttagactaaa ataaagcaat ttatcctttt ctattgcctg
     6421 agcataagct aaaaaggctt tatcttctaa atcttgctta tctttacttt ctttataaat
     6481 tttagattct ttaagttttt tataatcact tgtttgccta aatgcattgc gataatcttt
     6541 aaaggcttct aactctgcaa gtttagaatc taagtttcca tttaaaaaat tgctataaag
     6601 ctctttatca aattttctaa aatcacaata cgtatttaga taattttgat aaaagctttc
     6661 attgtctttt aaattttcag cttctatgcg ttctttaatc aaactataat cttgagaaat
     6721 aagatgattt tcttgtttaa aagtttcttt tttgcgtaaa aataaaataa tcgtatttgt
     6781 ccctgttgct ccaaatgttt gattacctag ctctacaatg gcaataaaat caaaattttg
     6841 aaataatatt tctcttgtat ttttataaat agaatcttta tttaaaatag aacttggtaa
     6901 gataatagca gctttagcat tatcatttaa aatttgattt gctcgctcgc aaaaaaagca
     6961 ttcgatagaa ttatttgttt ctatgtttat atcatcgtta aaaagtttat aggtattctt
     7021 agatttatca cttaaagttt ctaaaaatcc ttttacagaa taaggcggat ttgctataag
     7081 caaatcaaaa ctatttgatt ctatttgtgg ttttgctttt tctccttcta aattatttgt
     7141 atttgctaat tcaaaagaag caagtgcatc agcgtataaa atattgattt cattttgccc
     7201 atacattgca cttgatacct tagaaacctt acttaagcga tactcttttt caataccata
     7261 aatattttta taatgctctt taagctcatc ttctgttaga taacgcttaa gctcattggc
     7321 ataggtgttt aaaaaatgtc cagcaccaca agcataatca atcaccctta aagctttaga
     7381 gtttttgttt aacatttctt gaagcggtaa agaatacata ataaattcac aaatttgaat
     7441 aggggtaaaa aactgccctt catcttgctt catacctttt tgcaaaaaaa gttcaaaaag
     7501 attgcctaaa aattgatttg tagagttttg ggtaagcttg taatttgcaa aaagctctac
     7561 tatttctttt aatacaagtg cattttttaa gaataattct ttattatgca cttctaaaaa
     7621 tgcaaaatca ttatttgaat aaaattttaa ttctttgatg taattttgca ttacttcttt
     7681 taaagttttt atctttaatt gcttaaagtc tttttctata tcttcattag atacaaaggt
     7741 aattttctct cctaagaatt ctttcatagc ttctttataa agccacatta atctatcttg
     7801 catatttgca taagtatctg ccattacacc aaaatatcca aatttgagat tgtttttatt
     7861 aaaagtttca tcatagattt tacaaagaaa aatatttaca agtttatcaa aggcattttc
     7921 cttgcctgat atattatgct tgcgtaaaat ttttgcaaat tcgtgatatt taccttcttc
     7981 tttaagttcc ttaagattat caaaagttgg agtaatttct aaaattttat aagcattgac
     8041 atttgcttca aaaatacctt gtttaaaata ttgcagttca taactttctt tccaagtttt
     8101 aaaaagttct atattgttat tagatttttt ataagaattt tgtaattcct tttcttttag
     8161 atattcttcg ttatcgtaag cttgtatgat gtaattttta tattctaact tatcgctaaa
     8221 atcacttgta taaagacaaa gatattttac acctttttct tgctgaaaat aagaaaaaag
     8281 ctgtccgcca tcttcttgca ttctattcca ttcttttata aattcactat ttttagaatc
     8341 tgtggtttta cattctataa tcaaataagg attgttttca ttatccttta ctaaaatatc
     8401 agccttacca ccttttttat ccctgccaag attccatttt ggctctaact ctaaatgttc
     8461 agccttataa cctttttcta aaagtctatg cacacattca aaaactacaa aattttcagg
     8521 gtgtgaaaaa ttagaagtag ttttatcgtg aatttttatt tcttttgggt aattaatact
     8581 ttggttttta taatctatta aaagagtgta attattgatt gtttttacat aattttcatt
     8641 tttattttta aagcctaagt tttctagaac ttgttttaaa ttatcttttg taatcattta
     8701 tttccttata atctcaccac cttagcacca aagccacctt gattgatcgg tgcgtcatta
     8761 aagcccttga cacttttatg agttttcaaa aactctctta cagcaaaggc aagctttcct
     8821 gtgcctatgc catgatagat taaaacctcg tcaaatcctg ctatcaaagc atctgaaata
     8881 aatttatcaa gtctagcaat agcctcatca ctcctaagtc catgcaaatc caaactcacg
     8941 cttagattgc taggttttgt tacactaata cttgtttttg gacttatttt aggtgtagga
     9001 gtactttttt taagcagttt taaaggcaca cgaagtttga tcccatcact ttcaaccata
     9061 gcatcgtttt tagaaatgct tatgatttta cccttaattt tttcatattt tacaaaatcc
     9121 cccacacgca attcttcgtt ttgctccata cttggcaaga tgatttcttt tttaagttca
     9181 ttggctttat taagacttct ttgcttgtct ttcatatctt taagctgtat ggttttttta
     9241 gcttcttcta tggctttgtg aaatttaaat tctaaatttc tcaaactcgt acgaaattct
     9301 tgttcatttt tttctttttg ctcttttaag gaaagtaaaa tttcatcgac tttttgctct
     9361 tttttctcga cattttcaag cttagctttt agttctaatt caagattgat atttttaccc
     9421 acaagctctt ctaaattttc tttatcctcg ccataaagct ttttagcctc gccaactaaa
     9481 ttcggcggaa tctgataacg caaagcggtt tcaaaggcat aagattttcc tatagtacct
     9541 tttaaaaact catattttgg gcgtgaaagc tcttcatcat ataaagcagc gatgagttca
     9601 acttgctcat tctttgctaa aagcatggca aggcgtttgt ggtgtgtagt aatgatgatt
     9661 ttaagattat tagctatgag ttttgaaatt aacacactat acaaacaagc cgcttcttcg
     9721 aaatctgttc caagctctat ttcatcgata cctaaaagca aatttttcct agaaaaaagt
     9781 ctagaaaaat gcaacattct tcctgcaaaa gttgaaatgt cgtttttaac attttgcgga
     9841 tcttctatga tggcatcaaa ttctttaaaa gtaccgattt tactttcact tgcttttata
     9901 tgcataggca aaagatgttt agctaaaaat gctgcgctta gcatggattt taaaagcatg
     9961 gattttccgc ctgcatttac ccctgtgatg attaaaactt gttttttaaa ttccaaactc
    10021 acgctttttg gattttttaa ggcaggatgg gcgaaatttt taagcactaa atccgtactt
    10081 tgatcacaca aaacaaattc aaaatccctt tttttagcaa gcaaaaccct agcactataa
    10141 tgatcaaaaa gatcaaaggc tgtattgata aattttaaaa aaggtagatt ttttgctaaa
    10201 aaagctgaga aatttttagc gtattcataa taaatttctt ctttttgatt tttgattttt
    10261 tctatatcat tttgcaaatt ttcaacacta agcggaacga tgtaaaatcc tcccccacta
    10321 cttctaccta tgattttagc ttttatagcg tggttaaatc cccctcttac aagcaaggct
    10381 tcaagattgt ttataagatg gatttgtgta tcgataagat aaggcattaa agcttttgta
    10441 taacaaaatt tcttaaactc agctattatg ctttcatttt ttaatcttag agctgtattg
    10501 atatttacca atctttcatc taagctttct tttaactcgc ccttttcatc aaatttttca
    10561 caaagatcta aaattccatt gacaaattca atcttttcaa gccatgaatt taaattgctg
    10621 cctaaattga gctttttgat cttttcaaaa tagcgaaaaa tttttacaaa ttcaaaaatc
    10681 tcatctaaat gtaaaactcc ttgtttgctt aaatgtacca aagccttatc caaatttgaa
    10741 agctcgggca aatttggaaa ttcagtctcg caaagctcat tgatacgctt aaaatgaagg
    10801 tgagaatccc cctgtaaaaa aatttcttta tcccttgcaa aacaagactt aaattcatac
    10861 aaataagtat ttaaatcaag ttttaaaagt aattcttctt tgatctcatt catcgtttaa
    10921 cctacaatct ctaatatcga taatcaacga attaaagctt tgattattat cctttgatat
    10981 aaagcttcct gtcccaaatt cgtaattaaa ataagcttta gagatattta tatctttaca
    11041 taaaatattt ttattttgat taaaagctac gataatatct gttcttaaat gacttttttg
    11101 cgtgttttca aattcaaaaa atactgctaa aacaataaaa atcacaagca aaataccaaa
    11161 aaaaggttta gtttttttgc ctaatttttc acgcaaagca aaagtgatta aggctaaaat
    11221 taaaataatt aaaagatata aaaaaaacct actcattttt ttgccttaat ttattactga
    11281 tatctcctgc accaaaacct ataataagcc cttcttcaaa aacttgcccc ttagaagcca
    11341 ccaaaaattt accctctctt ttgatatctt ctacaaataa agccttagga aaaaccgctt
    11401 ttaaatcaag ttctataggc tcttctcctg cagcataaac aggtaaaatt acaagctcat
    11461 caacaccttc aaaagccttt gcaaattcct ttaaatttgt agccaaacgc gtgtagcggt
    11521 gaggttcaaa aatggctgta atttttttat atctacctaa ttttgcgtat tcttgtgctg
    11581 cgcttaaagt cgcttttatt tcggtaggat gatgaccata atcatcgatt aaaaccaaat
    11641 tttcatcagc atgtaaaata tcaaaacgct ttttaatacc ttgataattt ttaagcctag
    11701 ttcttatcgt ttctatatct aagaaattta aagccgccaa aatcgccaaa gacgcatcaa
    11761 gggctaaatg atatcccatg ccaaaaacct taaattcacc taaatctttc aactcaaagc
    11821 ttgtaaaagg tttgaaattt tctatacaca tggtgcagtt tttgatatct ttgctcggat
    11881 aaagcttggt tgactcattt ttataatttt tcaaaaactc atcttcagca ttaatcacgc
    11941 gaattttagc cacatctaaa aactgcgtat aagcatgatg gagttttgaa acttcattgc
    12001 cataatgatc taaatgctct gcttctgcat tagtaactat agccaaataa ggatttgaat
    12061 ttaaaaaaga actatcgctc tcatcagctt caaaaacaag gttttgactt tctttataaa
    12121 tcatatttga accaaattct tttaaaatcg ctccgatgat cacagaagca tcatcaagca
    12181 aagaagccaa aatacttgaa gttgtgcttt ttccatgtgc tcctgcaact gcaaaaacgc
    12241 gcttatcttc taagataaga ggtaaggcct ccttgcgtga aaggcattca atgcctaatt
    12301 ctttagcgtg tttaaattca ggattttctt ctttgatagc ggcagaataa ataactaaat
    12361 ctttatttaa aatattgtct ttatgatgag ggatactgac cttaacccct tctttttcta
    12421 attctttggt aattttgctt tctttaagat cactcccgct aatcttaaag cctttttctt
    12481 ttaaaaatct tgctaaagcg gaaattccta taccgcctat accgataaaa tggatatttt
    12541 gcattatcta agcctttgta ttgtaaagct taaattttaa cac
//
LOCUS       DBBXRO010000041        12474 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.041, whole genome shotgun sequence.
ACCESSION   DBBXRO010000041 DBBXRO010000000
VERSION     DBBXRO010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12474
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.041"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            65..754
                     /locus_tag="ACJFEZ_000851"
     CDS             65..754
                     /locus_tag="ACJFEZ_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HGG0916981.1"
                     /translation="MDKLIPAWDEKYSINDEKIDAQHQKLFELAAKIENAVYKFVQRD
                     ELKEILTELFNYMKDHFSNEEDYMQEISYPYLNEHKIMHKNIIHDMSHLIQNIKTTND
                     LKEKLYTIMSDWLLEHILHHDVMIGNWLSEQLLAKQEEELEKLQQEDLQQEKQYENNP
                     NPSPPQIKKEYDFIYSCPCRTNHFLSYIEHLDIICHKKQLRCKKCQKNLFYVRSEIKT
                     EKRNNDVSKVG"
     gene            735..1346
                     /locus_tag="ACJFEZ_000852"
     CDS             735..1346
                     /locus_tag="ACJFEZ_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HGG0916982.1"
                     /translation="MFPKWDDNYSVHNAKIDEQHKKLFELAGKVEFMFDRPVYKDDIK
                     ALLADFFNYMKDHFNDEEKYMKLIGYPGLEEHKKIHKEIIQSMIDLIKNIKSTNDLKE
                     KLYTVSKKWLLEHILYEDMKVEQYRRSSLSSEDDSEVSFEEVKEEKDDETALYFYTCE
                     CVGQIHDVPFGIHQKIQLKGAKFKCKKCKMAIQFYKKHSESFE"
     gene            1392..1577
                     /locus_tag="ACJFEZ_000853"
     CDS             1392..1577
                     /locus_tag="ACJFEZ_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916983.1"
                     /translation="MDKKIKYYISNKTKYSYPILTKDVQCSNCKNFYSIEFASNLKKI
                     EKECPSCKTKMDIKLKD"
     gene            complement(1574..2605)
                     /locus_tag="ACJFEZ_000854"
     CDS             complement(1574..2605)
                     /locus_tag="ACJFEZ_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HGG0916984.1"
                     /translation="MKKNIVFFEVRGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKNEIYNYVKENFDGYVSRINPGNLKEENEYFDMLRKLCQEGLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGEVKGDILPLDTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAQYRYDKPEDWQNLVDMFLGEL
                     PKVRAKLGNYDLPLIWTADFILDNDEKGNDKYVLGEINCSCVGFTSHLELADEVAQNI
                     INIVSKAKN"
     gene            complement(2713..3609)
                     /gene="sppA"
                     /locus_tag="ACJFEZ_000855"
     CDS             complement(2713..3609)
                     /gene="sppA"
                     /locus_tag="ACJFEZ_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HGG0916985.1"
                     /translation="MQILKSFFKGLGSVIKFINTYFKTFVLLLIVIWLLVPSSNSSSS
                     YANLERIDLKGEILDSSELLEKIISAKNNDNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKTKKPVIAYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSELAKKIGI
                     KEQTIQAGEFKSAGTFTRAWSEEEREFLQNLIDESYDLFSEFVAKERDLELDKRKDWA
                     NARVFLAQNAKDLGLIDELSNYENAKKELQELAKVLNPVWKEEGRIDRFLNRLESQSS
                     NFLGKVISDTVLRLNANFLELK"
     gene            complement(3597..4826)
                     /locus_tag="ACJFEZ_000856"
     CDS             complement(3597..4826)
                     /locus_tag="ACJFEZ_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HGG0916986.1"
                     /translation="MYIISAKYIFLCDEQFSILENKAFVFENEILELGELEELKKRYP
                     EAKLIKTSPNCVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNEQAKE
                     ELILKNIQKMQKSGIGTIGEISSFGSDLNPCVRASQNGMRVVFFNEILGINEAQIQDK
                     KQEFLTRFEKSLKFKDEFFIPAISVHSAYSTHPELAKFAINLAKKQKLLISTHFLESK
                     AENAWLKEAKGGFKEWFKNFTPDPKPLYKASEFIQLFKGVRTLFTHCVYLKEMDLLDK
                     NLHSITHCAFSNRLLSQKTFDLKKALKSGLNIHLGTDGLSSNISLSILDEMRANLLVH
                     TDFDLLKLAPKLLQMATLYPAKALNLNLGEIKQGKMADFSVFELGECNKEQAPLQFIL
                     NAKEVQKLFIKGKECKF"
     gene            4919..5407
                     /gene="aroQ"
                     /locus_tag="ACJFEZ_000857"
     CDS             4919..5407
                     /gene="aroQ"
                     /locus_tag="ACJFEZ_000857"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HGG0916987.1"
                     /translation="MKVMVIQGPNINMLGVREVRIYGAMKMEDIHTQMKMAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAISAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGSIVGFGPFGYHLALMGIIQICEQVKNLHAAQAQQMQARA
                     QN"
     gene            5410..5892
                     /gene="folK"
                     /locus_tag="ACJFEZ_000858"
     CDS             5410..5892
                     /gene="folK"
                     /locus_tag="ACJFEZ_000858"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HGG0916988.1"
                     /translation="MLKIKGARRLETSRFFPYFSQNKKEFKYLALVGLGSNIEPEKKR
                     FNKLFRVMMEDRRFKILATSPFLINEAFGFKAQKDFTNAAMLIQTNLHARAFLKVLLF
                     YELKFKRKRTFKNAPRTLDLDLLYFSQKVKRDEGCMVPHIGANQRISVILPLGLTKGL
                     "
     gene            5893..7323
                     /gene="flhF"
                     /locus_tag="ACJFEZ_000859"
     CDS             5893..7323
                     /gene="flhF"
                     /locus_tag="ACJFEZ_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HGG0916989.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRA
                     ALYEVMVAIEESDYEEHLKKMGKSLPPKKTIAKTLEKQNLEEKVNASIPQNNEDEDVI
                     LDFSNTRANLAKTKTSDTNYQDFPQSKINPNPTMGFNDFKERLSEVSNEISKVTNTPL
                     VDNYAPNPNYNKKIENFEKQINKLNDKIDLLADMMWDEKAEARNNLIIPPEFATIYKK
                     AKESGMLEKHLEAIMKATIENMPAAMKTNKDAVQRYFYSLLRNILPCRVESEIKKQKI
                     MMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPI
                     IDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQNKLAKTKEFLMHSNAEIDVSLVVS
                     ANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFSTGQEVP
                     DDIEVANSDFLVRCILEGFNKGKDNE"
     gene            7316..8182
                     /gene="flhG"
                     /locus_tag="ACJFEZ_000860"
     CDS             7316..8182
                     /gene="flhG"
                     /locus_tag="ACJFEZ_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HGG0916990.1"
                     /translation="MNNQANKLRSLMNQNGGKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMSDEVVV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNRL
                     NLEFLGHLSASKDVSGSIKKRTLFTDENSASSDELKALASKLLYRLERKVLDNVTSRS
                     FSNFFRKIIERF"
     gene            8202..8558
                     /locus_tag="ACJFEZ_000861"
     CDS             8202..8558
                     /locus_tag="ACJFEZ_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916991.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIEEAFDILISTCFITFMFY
                     VFIHIAIMNFIDIKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNESKERRKNAKRAA"
     gene            8539..9231
                     /locus_tag="ACJFEZ_000862"
     CDS             8539..9231
                     /locus_tag="ACJFEZ_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HGG0916992.1"
                     /translation="MQKEPPKAYAQMIKDEQDQLVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDSFWGFARKRVNGAMLDFLRSLDVMSRNNRKIIK
                     DIDILIDEYFREHEEEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDDQLELYNED
                     DTLEKLEKEQLLEKIHEVLEDLKERDQLIIQLYYYEELSLKEISEILEISESRISQIH
                     KKLLKKLRERLV"
     gene            9231..10307
                     /gene="fliM"
                     /locus_tag="ACJFEZ_000863"
     CDS             9231..10307
                     /gene="fliM"
                     /locus_tag="ACJFEZ_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HGG0916993.1"
                     /translation="MAEILSQEEIDALLEVVDDNTNTPTASEKDGKDERNIVVYDFKR
                     PNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPT
                     SFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILRI
                     IMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNICY
                     PVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFL
                     ELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEIL
                     EKYEEERKAKASVYDEPEEEEEEI"
     gene            10304..11140
                     /gene="fliY"
                     /locus_tag="ACJFEZ_000864"
     CDS             10304..11140
                     /gene="fliY"
                     /locus_tag="ACJFEZ_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HGG0916994.1"
                     /translation="MINEFLKLFTNECTSTIEGLTGKSAEFSEYKEFDVSSQDTLKPP
                     LVYAVFNIKEGGKIGILAGAVLMSAIGEWMMGEEEISKNDQLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFEISSCEFVAENVDFKDFTKLYFFDVKIEDLEEQISLIVDQ
                     TLHNILSGKAADDGHAHSSSNSENKDFEISEELKNINLIMDVRLPVRVRIGNKKMLLK
                     DVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERLEQ
                     LR"
     gene            complement(11189..11785)
                     /locus_tag="ACJFEZ_000865"
     CDS             complement(11189..11785)
                     /locus_tag="ACJFEZ_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HGG0916995.1"
                     /translation="MEKILKILLFLPILTLSAKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGFQSNSYQIN
                     RENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKNQFFSIWD
                     RYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(11770..>12474)
                     /locus_tag="ACJFEZ_000866"
     CDS             complement(11770..>12474)
                     /locus_tag="ACJFEZ_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916996.1"
                     /translation="SLYPNITIGGDPTIWNDTKQVFLTQTFIYTLTPKFDILISGGGS
                     YARQEYTNFFTNEYSSKNRIGFDNLWLGFIYTGDSIADLIPQITFQTAVVQREKAINQ
                     TKNFYLKSQSLQASLRGYSDPVVYSIYTGFGYNQSRKFKTLKIEYGNSIYVGGDLSII
                     LSPKITLDLGAEQRFQTEQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFGGS
                     SASPDSIFGISLWKKF"
BASE COUNT         4547 a         2024 c         1958 g         3945 t
ORIGIN      
        1 aaaatacgat aacatacctc aatatcaaaa catacaaata attgagattt atttggagaa
       61 aactttggat aaattaattc ctgcttggga tgaaaaatac agcataaatg atgagaaaat
      121 agacgcgcaa caccaaaaac tttttgaatt agctgctaaa attgaaaatg ctgtttataa
      181 attcgttcaa cgcgatgagc ttaaagaaat tcttaccgaa ctctttaatt atatgaaaga
      241 tcacttcagt aatgaagagg attatatgca agagatttct tatccttatt taaatgaaca
      301 taaaataatg cacaaaaaca ttatccacga tatgtcgcat cttatccaaa atataaagac
      361 taccaatgat ttaaaagaaa aactttatac cataatgtca gattggctat tagaacatat
      421 tttacatcat gatgttatga taggaaattg gctttcagag caattattag ccaaacaaga
      481 agaagagcta gaaaaacttc aacaagagga tcttcaacaa gaaaaacaat atgaaaacaa
      541 tccaaatcca agccctcctc aaatcaaaaa agaatacgat tttatctatt cttgcccttg
      601 tagaacaaat cactttcttt cctatataga gcatcttgat attatttgtc ataaaaaaca
      661 actaagatgt aaaaaatgtc aaaaaaatct attttatgta agaagtgaaa tcaaaactga
      721 aaaaaggaat aatgatgttt ccaaagtggg atgataatta tagcgttcat aatgccaaga
      781 ttgatgagca acacaaaaaa ctttttgaat tagcaggtaa ggttgaattt atgtttgatc
      841 gacccgtgta taaagatgat atcaaagctc tattggctga tttttttaac tatatgaaag
      901 atcattttaa tgatgaagaa aaatatatga agcttatagg atatcctggc ttagaagagc
      961 ataaaaagat acataaagaa atcatccaat ccatgataga cctcattaaa aacataaaat
     1021 caaccaatga tttaaaagaa aaactttaca cggtttctaa aaaatggctc ttagaacata
     1081 tactttatga agatatgaaa gtggaacaat acagacgctc ttctttatcc tctgaagatg
     1141 atagtgaagt aagttttgaa gaagtaaaag aagaaaaaga tgatgaaaca gctttatatt
     1201 tttatacttg cgagtgtgtt ggacaaattc acgatgtgcc ttttggaatt catcaaaaaa
     1261 tacaattaaa aggtgctaaa tttaagtgta aaaaatgcaa gatggccata caattttata
     1321 aaaaacattc cgaatctttt gaataataac tattctatag tagaatgaaa taaaaaataa
     1381 ttgattctac tatggacaaa aaaataaaat attatatctc aaataaaaca aagtattctt
     1441 atcctatttt aaccaaggat gttcaatgct ctaattgcaa aaatttttac tcgatagaat
     1501 ttgcttcaaa tttgaaaaaa atagaaaaag aatgcccatc ttgcaaaaca aaaatggaca
     1561 ttaagcttaa agattagttt tttgccttgc ttacaatatt gatgatattt tgagcaactt
     1621 catcagcaag ttctaagtgc gaagtaaagc ctacgcaaga gcaatttatt tcacctaaaa
     1681 catatttatc gttgcctttt tcatcattat ctaaaataaa atcagctgtc caaataagcg
     1741 gtaaatcata attacccaat tttgcacgca ccttaggaag ttctcctaaa aacatatcta
     1801 ccaaattttg ccaatcctcg ggtttatcat agcggtattg cgccccacta aaaagcgttg
     1861 cagaaaaagc atcggcatct tcagctggtt ttttatgaac tacatttaca ggagtgttat
     1921 aaagcattaa aagtcttatc tctccttctt taatgcgtgg taaaaaagtc atatctacaa
     1981 gcataccatt atcacctatg atatattgct cacaaaaatc cataaattca cccagttctc
     2041 tatgctctac atgattgtct tttgcttcgg tacatttgat tttagtatct aaaggcaaaa
     2101 tatctccttt tacttcgccc tctacactca cacgccaaat tccctctcct gtagagccac
     2161 gattttgttt taaaaccctt tcgcctttag ccaaactttt tggaaaattt tctttaaaag
     2221 tcttgatatc atagtatgca taagtatcac ttggcacaag atctgtatct gcaagttttg
     2281 ttaaagcgtc tttggctcca taacctatca tcgcatcagg atgaggcata cccacaagac
     2341 cttcttggca aagttttctt agcatatcaa aatactcatt ttcttcttta agattgccag
     2401 gattaatacg cgaaacataa ccatcaaaat tttcttttac atagttataa atttcattct
     2461 ttttgcctac ttcaaaaaaa atcacctcgg cattccaacc cttagctttt aaagcattta
     2521 ccataggcat agtatctttt ctatagccat cttcaccctt atcgctaccg cctctaacct
     2581 caaaaaagac tatatttttt ttcattgcac tgctcctttt aagttaaaat ataaacaatt
     2641 atttcataaa aatgttataa aagttaaacg aataagaggc tttttctcct ataagatata
     2701 aaaaatttag aattatttta attctaaaaa attcgcattc aatctaagca cagtatcact
     2761 tatcacttta cctaaaaaat tggaactttg actctctaaa cgatttaaaa atctatcgat
     2821 tctaccctct tctttccaaa caggatttaa aactttagca agttcttgaa gttctttttt
     2881 tgcattttca taattgctta attcatcaat aagtcctaaa tcttttgcat tttgtgctaa
     2941 aaacaccctt gcatttgccc aatcttttct tttatctaat tccaaatcgc gttctttggc
     3001 tacaaattct gaaaaaagat cataactttc atcaatcaaa ttttgcaaaa attctctctc
     3061 ttcttcactc caagcccttg taaaagttcc tgcactctta aattcccctg cttgtatggt
     3121 ttgttcttta atccctattt tcttagccaa ctcactcaaa tcagcaccct gcataatcac
     3181 acctatagat cctataaaac tagcaggatt tgccaaaatt ttatttgctc ctactccagc
     3241 caagtaactc ccactcgcca tagtcccact tgcataagct ataacaggtt ttttagtctt
     3301 taaatcctta atagccaaag ctagctccat acttggagca aaagcacccc caggagaatc
     3361 tatcacaaaa agcacgcctt taatattatc attattttta gcactgataa ttttttccaa
     3421 aagttctgag ctatctaata tctcgccttt taagtcaatg cgttctaaat ttgcatatga
     3481 tgagcttgaa tttgagcttg gtaccaaaag ccaaatcacg atcaacaata aaacaaaagt
     3541 tttaaaataa gtattgataa attttatcac gctacccaaa cccttaaaaa atgattttaa
     3601 aatttgcatt cttttccttt tataaataat ttttgcactt ctttagcatt taaaataaat
     3661 tgcaatggcg cttgctcctt gttgcattct cctaattcaa atacactaaa atcagccatt
     3721 tttccttgct tgatttcacc taaatttaaa tttaaagctt tagctggata aagcgttgcc
     3781 atttgtaaaa gcttaggagc taattttaac aaatcaaaat ctgtatgcac aagcaaatta
     3841 gcacgcattt catctaaaat cgataaagaa atattagaac ttaaaccatc tgtacccaaa
     3901 tggatattta agccgctttt taaagccttt tttaaatcaa atgttttttg acttaaaaga
     3961 cgatttgaaa aagcacaatg ggtaatagaa tgtaaatttt tatcaagcaa atccatttct
     4021 tttaaataca cacaatgggt aaaaagcgtc ctaacacctt taaataattg aataaattca
     4081 ctagctttat aaagaggctt aggatctggc gtaaagtttt taaaccattc tttaaaccct
     4141 ccttttgcct ctttaagcca agcattttca gccttacttt ctaaaaaatg cgtactgatt
     4201 aataactttt gctttttagc aagattgatt gcaaattttg caagctctgg atgagttgaa
     4261 taagcagaat gcacagaaat agcaggtata aaaaactcat ctttaaattt taaagatttt
     4321 tcaaatcttg ttaaaaactc ttgtttttta tcttgaattt gggcttcatt tatgcctaaa
     4381 atttcattaa aaaatacaac acgcattcca ttttgacttg ctctaacaca aggatttaaa
     4441 tcgctgccaa agcttgaaat ttcacctata gtacctatac cgcttttttg cattttttga
     4501 atgtttttta atataagctc ttctttagct tgctcattta acatagaacg agagttaatc
     4561 acgcttttaa gccaaattaa aaattctcca aaatgcaaag tggtcgaatt tgcgctaaat
     4621 tctaaatggg tgtgcggatt gataaaagca ggtaaaatga cgcaattagg gcttgttttt
     4681 ataagcttag cctctgggta tcgttttttt aattcttcta attcgcctaa ttctaaaatt
     4741 tcattctcaa aaacaaaggc tttgttttct aaaatactaa attgctcgtc acataaaaag
     4801 atatattttg cactgattat atacattctt ttttccttga ataaaatcac attgtagcga
     4861 aaatttattt taaaatgtta taataaaagg ttaaaaataa aaattttaag gcaaaattat
     4921 gaaagtaatg gtcatccaag gcccaaatat caatatgcta ggcgtaaggg aagttagaat
     4981 ttatggtgca atgaaaatgg aagacattca tactcaaatg aagatggcag cttctcaaaa
     5041 caatgttgaa ttagattttt ttcaaagcaa ttttgaaggc gaaattgtag ataaaattca
     5101 agaatgtctt ggtacagtag atggtataat catcaatgct gcaggctata ctcatacttc
     5161 agtagccatt cgtgatgcga tttctgcagt ggctttacct acgatagaag tacacatcag
     5221 taatgtttat cgcagagaag aatttcgtca aaaaagcctt atagctcctg tatgttctgg
     5281 atctatagta ggatttggtc cttttggtta tcatttagct ttaatgggca ttattcaaat
     5341 ttgcgagcaa gtaaaaaatt tgcatgctgc gcaagcacag caaatgcaag ctagggctca
     5401 aaattaaaaa tgctaaaaat aaaaggagca agacgacttg aaacaagccg tttttttcct
     5461 tattttagcc aaaacaaaaa agaatttaaa taccttgctc tagtaggtct aggaagcaat
     5521 atagagccag aaaaaaaaag gtttaacaag ctttttcgtg taatgatgga ggatagaagg
     5581 tttaaaattt tagccacatc tccatttttg atcaatgaag cttttggttt taaagctcaa
     5641 aaagatttta cgaatgcagc aatgcttata caaacaaacc tacacgcaag agcttttttg
     5701 aaagttttac ttttttatga gcttaaattt aaaagaaaaa gaactttcaa aaacgctcct
     5761 agaacacttg atttagatct tttatatttt tcacaaaaag tcaagcgtga tgaggggtgt
     5821 atggtgcctc atataggggc taatcaaaga ataagtgtaa ttttgccctt gggcttaaca
     5881 aaaggattgt aaatgggaca acttatccat acctttactg tagaagatac agagcaaatt
     5941 atcccgaaag taaaagagga ttatggcgac aaagctttaa ttattaccaa taaacaaatt
     6001 cgtcccaaaa cacttaaccg cgctgctctt tatgaagtaa tggttgctat agaagagagt
     6061 gattatgaag agcatttgaa aaaaatggga aaatccttgc ctcctaaaaa aactatcgct
     6121 aaaactttag aaaaacaaaa tcttgaagaa aaagtcaatg cttcaatacc acaaaataac
     6181 gaggatgaag atgtgattct tgatttttca aatactaggg caaatttagc aaaaaccaaa
     6241 actagcgaca ctaattacca agactttcca caaagtaaaa tcaatcctaa tcccaccatg
     6301 ggttttaacg attttaaaga acgcttaagt gaagtaagca atgaaatttc aaaagtaacc
     6361 aatacccctt tggtagataa ttatgcaccc aatccaaact ataataaaaa aatagagaat
     6421 tttgaaaaac aaatcaataa gcttaatgat aaaatcgatt tactcgcaga catgatgtgg
     6481 gatgaaaaag cagaagctcg caacaatctt atcattcctc ctgaatttgc aaccatttat
     6541 aaaaaagcca aagaaagcgg tatgcttgaa aagcatttag aagctatcat gaaagccact
     6601 atagaaaata tgcctgcggc catgaaaaca aacaaagacg ctgtgcaacg atatttttat
     6661 tctcttttga gaaatatttt accttgcagg gtagaaagtg aaatcaaaaa acaaaaaatt
     6721 atgatgcttg taggcccgac aggggttgga aaaaccacaa ctttagcaaa gctagctttt
     6781 cgttatgctt atggagataa gcgctataaa acaggtataa tcactttaga tacttataga
     6841 atcggtgctg tagaacaact tttccaatat gcaaaaatga tgaaacttcc catcatcgat
     6901 agtatagaac caaaagattt ggacgaggcg attaaaagtc ttaataactg cgaagtaatt
     6961 ttagtcgata ctataggaaa ttcgcaatac gatcaaaaca aacttgccaa aacaaaagaa
     7021 tttcttatgc attcaaatgc tgaaattgat gttagtctag tcgtttctgc taataccaag
     7081 catgaagacc tgatggaaat ttacaaaaat ttttcatttt taaatatcga cacccttatc
     7141 atcaccaaat ttgatgaaac taaggttttt ggaaatattt tctctttaat ttatgaaact
     7201 aatatcccac taagcttttt ctctacagga caagaagtgc ctgatgatat agaagtagcc
     7261 aatagcgatt ttttagttcg ctgtatctta gaaggtttta acaaaggaaa agataatgaa
     7321 taatcaagcc aataaactcc gtagccttat gaatcaaaat ggaggaaaaa aatcacaaaa
     7381 cactcatttt atagcgatta caagtggaaa aggtggagta ggtaaaagca ccattagcgc
     7441 aaatttggca aatgtacttg ctaataatgg atataaagta ggactttttg atgcagatat
     7501 tggcttagca aatcttgatg ttattttaaa tgttcgcatt caaaaaaatc ttttacatgt
     7561 tttgcgcgga gaatgctctt tagaagatat tttgatcgaa gtaaagccaa atttatggct
     7621 catccctggt gaaagcggtg atgaaatttt aaaatacaac gataaaaaca tttatgaaag
     7681 atttttaaat caagcaagta ttttagatga gcttgatttt cttatcatcg acacaggtgc
     7741 aggaatagga ggaaatatac tgaatttctt agaaatgtca gatgaagttg tagtagtaac
     7801 cgttcctgat cctgctgcga ttaccgatgc atatgcaacc attaaaacca cctctaagac
     7861 aaaagaaaat ttactgatgc tatttaatgt tgtcaaaaat gaaaatgagg ctttaaaagt
     7921 ttttgaaaat attaaaaaag ttgctgatgc aaatataaaa aatcgtttaa atttagaatt
     7981 tttaggacac ttgagcgctt caaaagatgt aagtggtagc attaaaaaac gcaccttgtt
     8041 tacagatgaa aattctgctt caagtgacga gcttaaagcc ctagcttcca agcttttata
     8101 taggttggaa cggaaagtgc ttgataatgt cacaagtcga agtttttcaa atttctttag
     8161 gaaaatcatc gaacgattct aagcaataaa gagaagatat tatgagacct gaaaattatg
     8221 tagcattttt taccgtttgc ggatttttta taggattggc ttttagtatt attagtatag
     8281 aagaagcttt tgatatttta atttctactt gttttattac ttttatgttt tatgttttta
     8341 tacacattgc tattatgaat tttatcgata ttaaaaaaat cagtgggcga attttcaata
     8401 aacatgatta tgaaaagact agcaataata ttataaatga cttagtcatt cgtgaaaaga
     8461 aaatggatat aatcttagaa aagcttaacg aagaaagaga agagcttaag aaaaacgaat
     8521 caaaagaaag acgcaaaaat gcaaaaagag ccgcctaaag cctatgctca aatgataaaa
     8581 gatgaacaag atcagctagt tttatcctat atgcctgcac ttcgtgcaat ggcttttaga
     8641 ctaaaagaac gcttgccttc tagcattgat gtaaatgatc taattagcat tggcgttgaa
     8701 gaaatgatca agctttcacg ccgctacgat aaagagcaaa atgatagttt ttggggattt
     8761 gctagaaagc gtgttaatgg cgctatgctt gattttttac gctctttaga tgtaatgagt
     8821 cgcaataacc gtaaaatcat taaagatatt gatattttaa tcgacgaata ttttagagaa
     8881 catgaagaag agcctgatga tgaatatcta gctaaaaagc ttgatttgga tgtagaaaag
     8941 attaaagaag tgcgcaccgc acatgctatt agctatactt tacccattga tgatcaatta
     9001 gagctttata atgaagatga tactttagaa aaattagaaa aagaacaact tttagaaaaa
     9061 attcacgaag tattagaaga tcttaaagaa cgcgatcaac tcatcataca gctttattat
     9121 tatgaagaac tcagtcttaa ggagattagt gaaattttag agattagcga gagtagaatt
     9181 tcacaaattc ataaaaaact tttaaaaaaa cttagagaaa ggctagtgta atggcagaaa
     9241 tactctccca agaagaaatt gacgctctac ttgaagttgt cgatgataat accaatacgc
     9301 ctacagcctc tgaaaaagat ggaaaagatg aaagaaatat agttgtatat gactttaagc
     9361 gtccaaatag ggtatctaaa gagcaactta ggacaattaa aggtatacac gataaactag
     9421 caagaaattt agcttctcaa atttcgtcca tgatgagaag tattgttgaa accaaacttc
     9481 actcggtgga tcaaatgact tatggtgagt ttttgatgtc gctaccaagc cctacaagct
     9541 ttaacgtttt ctctatcaag cctcttgatg gaaactgcgt tttagagatt aacccaagca
     9601 ttgcttttcc tatgatagat agacttttag gaggtcaagg cgatagctat gaggcttcgc
     9661 gagagcttac tgatatagag cttaatttgc ttgattctat tttgcgtatc atcatgcaaa
     9721 gacttaaaga aagctgggct acagtaactg aaatttatcc tagtatagaa gctaaagaat
     9781 caagccccaa tgttgtacaa atcgtatcgc aaaacgaaat cgttatcatg gtggtgatgg
     9841 aaatcatcat aggaaattca agcggtatgg taaatatctg ctatcctgtt gtccatttag
     9901 aaagtatctt gagtcgttta gcaaaccgtg atattatgat gggtgaaacc tcagccaaaa
     9961 aatcacgcaa caaagaactt aaaactttaa tcggtcgtgc tgaagtggta tatgaggcaa
    10021 ttttaggaaa aaccttaatt aatgttcatg aatttttaga acttaaacaa ggcgatattt
    10081 taaggcttga tagagaagca gacgataaag ctatagtaag tatcgataaa aaagatgttt
    10141 tcttagcaca aattggattg catcgtttta gaaaatctat taaaatttta gaacttatac
    10201 gcacagataa agatgaaatc aaagaaattt tggaaaaata cgaagaagag cgtaaagcta
    10261 aagccagtgt ttatgatgag cctgaagagg aggaagaaga aatatgatca atgaattttt
    10321 aaaattattt acaaacgaat gcacaagcac catagaagga cttacaggaa aaagcgcaga
    10381 atttagcgaa tataaagaat ttgatgtttc atcacaagat acactcaaac cgcctcttgt
    10441 ttatgcggtt tttaacatca aagaaggtgg caaaataggt atattagcag gtgctgtact
    10501 tatgagtgct attggtgaat ggatgatggg cgaagaagaa atttctaaaa acgatcaact
    10561 aggccctgat gaaatggacg ctgctaaaga agcaattcaa aacatcattt cggctttttc
    10621 taccacttta ggcgcacaaa aagacatacc aaaaatggat tttgaaatca gctcttgcga
    10681 atttgtagca gaaaatgttg attttaaaga ttttacaaaa ctttatttct ttgatgtcaa
    10741 aatagaagac ttagaagagc aaatttcttt aattgtagat caaactcttc ataatatttt
    10801 aagcggcaaa gctgcagatg atggccatgc acactctagc tcaaattcag aaaataaaga
    10861 ttttgagata agtgaagaac ttaaaaatat caatctcatc atggatgtgc gtttgcctgt
    10921 tcgtgtgcgt ataggcaata aaaaaatgct tttaaaagat gttttaacta tggatatagg
    10981 ctcagttgtg gagcttaatc aacttgcaaa cgatccgctt gaaattttaa ttggggataa
    11041 aagaattgct tatggcgagg tagtaattgt cgatggtaac ttcggcgttc aaattacaga
    11101 aattggttct aaaaaagaaa gattagaaca actaagataa aaagttttag cctacaaatt
    11161 aagaataata aatataaacg aattaaaact aaaacaaact aaaagggctg aaatcaaaat
    11221 gtaaagattt tggagtattt aacttaaaag gttttagctc ttttttagga gcaacaatta
    11281 aagcataacc acctttatta tatctatccc aaatactaaa aaattgattt ttggaactta
    11341 tatattctcc atgacttgga tcaagcactt gtaaataatt acctttatga ttgataatta
    11401 taacaaaatg tggaaagcgt ggatcatctt caatttttac aagcattgga atatttacaa
    11461 gtttatccaa gttttctcta ttgatttgat atgaattgct ttgaaagccc agttttttaa
    11521 ctgcatcgct taaatctgca aagcttacca tatccgtata aagttcctgt ccactcataa
    11581 tctttaaaag ttcaagttca tcaaactttt tatcatcaag tatattgagt aaagttgcca
    11641 aagatgaagc cccacaagat tgctcataag tttgtcttat tactctttcg tttttaattt
    11701 cttgataaga cttaaccacc cattccgctt ttgcactcaa agtaagaatg ggtaaaaata
    11761 ataaaatttt tagaattttt tccataagct tatcccaaat atgctatcag gtgaagcaga
    11821 gcttcctcca aaactagcat taacagaaac tgcggtatct gaattaatgc tataagtaga
    11881 acctaaactt aaagttggaa tagaacgcac ttcagaattt tgataaccat taattttttg
    11941 ctcggtttga aatctttgct ctgctcctaa atctaaagta attttaggac ttagaataat
    12001 agataaatcc ccacccacat aaatactatt tccatactct attttaaggg ttttaaattt
    12061 tcttgattga ttataaccaa atcctgtata aatactataa accacaggat cgctatatcc
    12121 ccttaaacta gcttgtaagc tttgtgattt tagataaaag tttttggttt gattgattgc
    12181 tttttctctt tgaacgactg cagtttgaaa ggtaatttgt ggaattaaat ctgcaatgct
    12241 atcgcctgta taaataaaac ctagccataa attatcaaaa cctattctgt ttttactaga
    12301 atactcattt gtaaaaaagt ttgtatattc ttgtcttgca taacttccgc cccctgaaat
    12361 aagtatgtca aacttaggtg ttagggtata aatgaaagtt tgagttaaaa acacttgctt
    12421 tgtatcattc caaattgtag gatctccgcc tattgttata ttaggataaa gaga
//
LOCUS       DBBXRO010000042        12347 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.042, whole genome shotgun sequence.
ACCESSION   DBBXRO010000042 DBBXRO010000000
VERSION     DBBXRO010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12347
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.042"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..393
                     /locus_tag="ACJFEZ_000867"
     CDS             <1..393
                     /locus_tag="ACJFEZ_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916997.1"
                     /translation="NQNASFVVSFLKLDEKECEKMAKKEFKVPNANELMGQIIAFNEK
                     NGTNFGEELANDFIGYWDAREWKRNGKRMSSIAGSLYTWLKYAKENELRKNQRFNRKK
                     EANPSVVDSLMEYYGMKDENKDKILGCF"
     gene            404..1051
                     /locus_tag="ACJFEZ_000868"
     CDS             404..1051
                     /locus_tag="ACJFEZ_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916998.1"
                     /translation="MQEKIQILMDLLEINKAQATDIVGRYLKSIKDIHAFLDFYFETL
                     ERENIVGTTYEKLRRVCKRAEIEFKKRFEDKEIFLEWLKNKYKNQACFRLHEGDFEYS
                     YFASCGNGKKIKINQKSIDILVCVNAFKQISYKNGEPLENNEFKEALLEFIFKNQDRI
                     GKNLNIPLSVKKIEKVLSLEEKREIEKIEETKLFNENKDRLEIFIKSKKAFKKIS"
     gene            1069..1449
                     /locus_tag="ACJFEZ_000869"
     CDS             1069..1449
                     /locus_tag="ACJFEZ_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0916999.1"
                     /translation="MEKYFLKIDLKSNPVPYKRTTQRSKFVCRDYLKYLDFKKLLQIE
                     FRRQNDISCFQAFDKQKKYEFSLKIGFKNKKHGDADNIVKGVLDALFENDKNVLKGNY
                     EIVAFKKSFLELEISEYEFKEKVT"
     gene            1449..1835
                     /locus_tag="ACJFEZ_000870"
     CDS             1449..1835
                     /locus_tag="ACJFEZ_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HGG0917000.1"
                     /translation="MTRIMTNGKSITKEELVSKIENYFSEKTVLKETKESVIFAPKTK
                     VGLAVHLGISMQTLNEWEKDKDFGEIVANAKQRCEMDIVNHSLIGTYTPSVSMFLLKN
                     QHGYVDKQEVVSDNVQKIEIIRSEIK"
     gene            1832..3133
                     /locus_tag="ACJFEZ_000871"
     CDS             1832..3133
                     /locus_tag="ACJFEZ_000871"
                     /inference="COORDINATES: protein motif:HMM:NF015211.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HGG0917001.1"
                     /translation="MKLKLDFSYTPAQLKVFDDKNPRFITVAKGRRLGFTRGSAKFVI
                     ENLLMGQNVLWVDTIQANLQNYYELYFTPELKNLPKDFYSWSVQDKKLIINGAVLHMR
                     SAERSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRAIIGGVPKG
                     KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEDQIKELIEEVGGEDSEVVKQEIYGEF
                     IDSSSAELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFVIDE
                     IKKYSQLGTMELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSA
                     NSANSATSNEYLNKRAQMYFTFAKNLKHMELVKDEELKKDMRMIEYEYSDKGLLKIVS
                     KEQLKKNYGKSPDVSDAVALTFFEKLYSRNNTNEDWSYDGW"
     gene            3123..3395
                     /locus_tag="ACJFEZ_000872"
     CDS             3123..3395
                     /locus_tag="ACJFEZ_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917002.1"
                     /translation="MAGEFLMIYDAIDVNKIKKLSNLSDEAIKSSLANEFLELVSGFN
                     NISKKKFKREFAEFLFEKGVNEKDILKITNLSKTTIWRIMNENKKN"
     gene            3376..4893
                     /locus_tag="ACJFEZ_000873"
     CDS             3376..4893
                     /locus_tag="ACJFEZ_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917003.1"
                     /translation="MKTKRTNDERVSFLTQLISESKSGYENYKPHFKELQDAYLLENK
                     VMQKLRKRNKSSIYIPKINAKVKYLITSLNDVYFNSERMADIETYINSDDTIIELWQN
                     AIDFYSGKINMFKIFQPLFLDVLLVGTSIAKVTWHKGMPRIERVDIDSIFFDPNALNS
                     EDVGYIVNEIYLTYNQIHERQKLGFYKNIEIQKLFDEDDEYKKVKLYDIYERKSDDTW
                     VVSTLFESNLLRNEIDLKDGQPFIWGSMLPQLKKIDNENYVSAYGEPIMASAMPLQDE
                     INITRNLLIDAVRSHIMPKIIVPKSMGISREDIETLGKPIYTDDPKGIQILPPPNINS
                     SGINLQLLESELTEVTGISPQNNGAQTANNETATEISIKAQEGGRRSADYIRQYNETF
                     IEPLFDRFAMLVFKYGEDSFFNGFQREDIPSFRFKIQTGTGAMNKEVRRAGIQASMQV
                     FSQLYQMYMSIGDADSAYGIINASKELTKELLPILGVKNVNSLFAFENKQEMQQG"
     gene            4897..5100
                     /locus_tag="ACJFEZ_000874"
     CDS             4897..5100
                     /locus_tag="ACJFEZ_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917004.1"
                     /translation="MLNIEIKSDISKTKGGKNLIEFIKAKYSECFYIAKNNNEKEVRL
                     KALDTMAFLDIIINKIKDEEDGK"
     gene            5090..5746
                     /locus_tag="ACJFEZ_000875"
     CDS             5090..5746
                     /locus_tag="ACJFEZ_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917005.1"
                     /translation="MENDALKDLMQAISDEGDTGQATNNKDSAQVVENEPTNEPTQVV
                     DNEPDYKAMFETYKSENDSKLNALMSELETLKNPKKEPSEQELQRQQYLKELGLDGLD
                     EKLKRLEELDKKQRDKEEQDALIAKYAQVESELRKAYPDADLKAMAELATKLSGLGEG
                     NIDSWKTLLNLVGKSSNAKKAEDLSSANSNIKSSDFNDKLKKGEVSEIDLGKELLSLV
                     "
     gene            5757..6137
                     /locus_tag="ACJFEZ_000876"
     CDS             5757..6137
                     /locus_tag="ACJFEZ_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917006.1"
                     /translation="MDFITALKGGTGLGSSFADTLMKTSNFTPNLASSSGGFLNGLKN
                     SFSNFGDWLFKSSDTNKITNFDRLGNVLGGAGALYGAYNQQKMAQKNYELQKDAYNFN
                     KYLANEELNRRKNMENKLQNVWSN"
     gene            6402..7445
                     /locus_tag="ACJFEZ_000877"
     CDS             6402..7445
                     /locus_tag="ACJFEZ_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917007.1"
                     /translation="MAFYNPQRVVFNPDTGVIQNAGKVGGVLYDIMSKSFDDKVKANE
                     FQQEQDLRKQQMEFNQAMQNNQLLQNEFNNALALRKFDLERQRQVQDNALNWAKYKED
                     KDYNQKYLDYLTGKNSNIVTNKTNNNSGFSIDANGNLSEPQTMRDVFSKESNGGDLYH
                     FAKTAKTQNINLNDIYGFGDTINQKLRNTPFSNSKNLKQEFADKLKAEINLALVNITS
                     GRMSNEDRHRLEELVKTDSFYFFDKYAKHDIEKAVEILYRVKNDALKKEYMDIWKTER
                     YLKDRDNIENYYNNMYKKLENEKAMIKDFINAGNILASQGQRVPLNKILSQQPQQQLN
                     QNFLQQNNMITFR"
     gene            7458..10769
                     /locus_tag="ACJFEZ_000878"
     CDS             7458..10769
                     /locus_tag="ACJFEZ_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917008.1"
                     /translation="MTIQIPQGAKTMQLFDMNIDIPEGKTYIDIDDNFLQNKYNQFMQ
                     NNQQQNNFNSQEELALDGKPMSMYQAPQVSQNEPQEQGVWSKINKGLEDFNNLIDPKR
                     MISEGFDYLSPRVTSGEEGARQKIEDATNQVSGGLLPRIFTSPSNEEQKQIFQIAYDE
                     IKKLGYEPFLEINNGDYKYIGVDKNGKEVDFTPSFRNTLASTKNELAFSVAGGYAGSL
                     AKTAGQTIGKKALNYFAPSAIGAGSGAVSDLHSQSNNTGIEASYMDYAKRFGSAAAED
                     ALAGAVVGSAIKGIGKTYKSVGDLISSAKTGARAGKDMIDGMAVKGGNLGNRFIDKIS
                     KTDIPVVGKFTDGGLQNAETIFNNLTKNVENKKQIDELIAKENPTYLENGKPTIEILK
                     NIVEQGLNKNNPQFIQDSAKRTSSILKNISNALQGVPTTQRREILLKSAQAYPEIGSF
                     LDDVLKADKDASISFLNIIKEQDEVFKNKTGLNGEFDVKAWQKDNSSYKKRINNEYAQ
                     AIKSIDELNNGSIRLSKEDLAKIEEFKNNNFLEQDIKTNISSFLEDTIDKDLSAEQIF
                     NLRSAINKQLATGNKTYNTKEAYRLVKDTLDETMIKNASDKELAKKILEDANKNYALK
                     ENFNNSYLGKIKDQETPEALAQRIANGARNINEDKDLKRAFEGMNEVERKANEKHAFN
                     ALLAKHRIEDIGYDFKNLAKDMDNVEFVSKDLKYAKEVVNVYAKIYQNNKDLIMTALA
                     SSGKKTNSSIATTIQGVFDRILISGVFARIHALVPFMKSAKEQALRNQILDALKLAKT
                     NKEVISNLKNIKIADKEQSRIFKDALDNYIKVDKEQNKILKDALIKEGVIKGDNFFMD
                     KADPSKAKSDYTAKFNVEKWINNVSGILKDEWVVNLKAMAKKHPEMFKNEADVFKVIK
                     EIKDNPTHFFKNYDDEVALIAKPLKDDKVGNIAIKKDSGKIIHINKTKGKDLERLNRR
                     NKAMLTGTPTPATTKGSTTNVEGDLLQHSFKNSTQTKPKTNLMDDIKENIKAKEVEKK
                     NKKSVKQKLDEKIQNDKKAREERIKKIKQVIARKQKIDKVRDKKNNREIAGKIGTYTL
                     KNLIKLKERSEDNKN"
     gene            10931..11176
                     /locus_tag="ACJFEZ_000879"
     CDS             10931..11176
                     /locus_tag="ACJFEZ_000879"
                     /inference="COORDINATES: protein motif:HMM:NF037112.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917009.1"
                     /translation="MVWGEVIDKIKHKGYGLAHIIDKHPELDLKLISDIVDKGKLNNQ
                     NNIRYRIEYKNYIIGLSSEYKGNKRTFIITAFERYKG"
     gene            complement(11543..>12347)
                     /locus_tag="ACJFEZ_000880"
     CDS             complement(11543..>12347)
                     /locus_tag="ACJFEZ_000880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917010.1"
                     /translation="IIMLKKEFDEKIKSLGFTRQDFCNMTGLAYSSVSNWNDNNKPIP
                     IWVDTWLEKYEEEKTFSNVRGKITINKTTMENTRELLKQKYLMLNLRKPQDCLKLSYQ
                     YHQVKVNTYFDYYENTFNLFLVLNYEKSYYFTPLNIDNLIVKNPYLNDVPKEILGQIL
                     DNGSLKDFYDNMREHMIHDDVQKSNYEDYEFKNGLKSNKNNDKNPFLSHLRKTPMSEN
                     HLNFLNAQFNISKYILQRIRAKGYTIVTTANFSERKSLTLILNESSIRL"
BASE COUNT         5127 a         1452 c         2211 g         3557 t
ORIGIN      
        1 aatcaaaacg cctcttttgt agtgagcttt ttaaaacttg atgaaaagga atgtgaaaaa
       61 atggcaaaaa aagaatttaa agtcccaaat gctaatgagc ttatggggca aataatagct
      121 tttaatgaga aaaatggcac aaactttggc gaagagttgg ctaatgattt tataggttat
      181 tgggatgcta gagagtggaa aagaaatgga aaaagaatgt caagcattgc aggcagtctt
      241 tatacttggc ttaaatatgc taaagaaaac gagctaagaa aaaatcagcg ttttaacaga
      301 aaaaaagaag ccaatcctag tgtggttgat agcttgatgg agtattacgg aatgaaagat
      361 gagaacaaag acaagatctt aggatgcttt taaggagtaa aaaatgcaag aaaaaataca
      421 aattttaatg gacttattgg aaattaataa ggctcaggca actgatattg taggtagata
      481 tctcaaaagc attaaggata ttcatgcttt cttagatttt tatttcgaaa ctttagaaag
      541 agagaatatc gtagggacaa cctatgagaa attaagaaga gtttgcaaaa gagctgaaat
      601 cgagtttaaa aagcgttttg aagacaaaga aattttttta gaatggttaa aaaataaata
      661 taaaaaccaa gcttgcttta gactacatga aggagatttt gaatattcgt attttgctag
      721 ctgcggaaat ggtaaaaaga ttaaaatcaa ccaaaaatca attgatatct tagtttgcgt
      781 aaatgctttt aagcaaatct cctataaaaa tggcgaacca ttagaaaata atgaatttaa
      841 agaagcccta cttgaattta ttttcaaaaa tcaagacaga ataggaaaaa atttgaatat
      901 tcctttgtcg gttaaaaaaa tagagaaagt tttaagccta gaagaaaaaa gagaaatcga
      961 aaagattgaa gaaacaaaac tttttaatga aaacaaagat aggcttgaaa tttttataaa
     1021 aagcaaaaaa gcttttaaaa aaataagcta attttaagaa agcctgaaat ggaaaagtat
     1081 tttttaaaaa ttgatttaaa aagcaatcct gtaccttata aaagaacgac tcaaagatct
     1141 aaatttgtgt gcagggatta tcttaaatat ttagatttta aaaaactctt gcaaattgag
     1201 tttagaagac aaaatgatat tagctgtttt caagcctttg ataagcaaaa aaaatatgag
     1261 ttttctttaa aaataggatt taaaaataaa aaacacggag atgcggacaa tatcgtaaaa
     1321 ggtgtattgg atgcactatt tgaaaatgac aagaatgttt taaagggaaa ttatgaaatt
     1381 gttgccttta aaaagtcttt tttagagcta gaaattagcg agtatgaatt taaagaaaag
     1441 gtgacataat gactagaata atgactaatg gcaaaagcat cacaaaagaa gagcttgtat
     1501 caaagataga aaactacttt agtgaaaaaa ctgttttaaa agaaactaaa gaaagtgtta
     1561 tttttgcacc taaaacaaaa gtgggattag ccgtgcattt agggatttca atgcaaactt
     1621 taaatgagtg ggaaaaagat aaagattttg gcgaaatagt agcaaatgca aaacaaaggt
     1681 gtgaaatgga tattgttaat cattctttaa ttggcaccta taccccaagc gttagcatgt
     1741 ttttgctaaa aaatcagcac ggttatgtag acaaacaaga agtagtcagc gataatgtac
     1801 aaaaaataga aattataaga agtgaaatca aatgaaatta aagcttgact tttcttacac
     1861 tcctgcacaa cttaaagttt ttgatgataa aaatccacgc tttataaccg tagcaaaagg
     1921 cagaagactt ggttttacaa ggggaagcgc taagtttgtc atagaaaact tgctaatggg
     1981 acaaaatgta ttatgggtgg atactataca agcaaactta caaaactatt acgagctata
     2041 ttttacgcct gagctaaaaa acttacctaa agatttttat tcttggagcg tgcaagataa
     2101 gaaattaatc attaacgggg cggtacttca tatgagaagt gctgaaagaa gcgaaaatat
     2161 cgaaggtttt ggttatgacc ttgttatctt aaatgaagca ggtattattt taaaaggcag
     2221 caaaggggaa tatctttggt ataacgctat acgccctatg ctacttgata atcccaaatc
     2281 aagggcgatt ataggtggag tacctaaagg aaaaaatcta ttttacgagc tatgtagaaa
     2341 agaattgagt gacaaaaatt ggaaacactt tcaattttca agctatgaca accctttttt
     2401 aaaagaagat cagattaaag aacttattga agaagtgggt ggcgaagata gcgaagtagt
     2461 caaacaagaa atatatggag agtttataga tagctcgagc gcagagcttt ttgcattaac
     2521 tgaaattgaa aatgcgatga gcaagaactc ttttagtatt gaaaaaatgc aaggtgagaa
     2581 tatttggggg cttgatgtag caagatatgg agatgataaa agtgttttag caaaaagaaa
     2641 aggttttgta attgatgaga ttaaaaaata ctcacaactt ggaaccatgg agttagcaaa
     2701 taaaatatta gctgaataca atcaaagcga agacaaacca aaaggtattt tcatagatac
     2761 ttgcggtctt ggcgttggcg tgtatgatgt cttgttaaat tatggcttgc ccgtatttga
     2821 ggcaaattct gcaaattctg caaattctgc aactagcaat gaatacttaa ataaaagagc
     2881 gcagatgtat tttacatttg ctaaaaactt aaaacacatg gagcttgtta aagatgaaga
     2941 attaaaaaaa gatatgagaa tgattgagta tgaatatagc gacaaggggc ttttaaagat
     3001 agtttcaaaa gaacaattaa aaaagaacta tggcaaaagt cctgatgtta gcgatgcggt
     3061 ggcattaact ttttttgaaa aactatacag cagaaacaat actaatgaag attggagtta
     3121 tgatggctgg tgagttttta atgatctatg atgcaattga tgtaaacaaa ataaaaaagc
     3181 tttcaaattt aagcgatgag gctataaagt caagtcttgc aaatgaattt ttagaacttg
     3241 tatcaggatt taataatatt tctaaaaaga aatttaaaag agaatttgcg gagtttttat
     3301 ttgaaaaagg agtgaatgaa aaagatattt taaaaataac aaatttaagc aaaacaacaa
     3361 tatggagaat tatgaatgaa aacaaaaaga actaatgatg agagagtatc gtttttaaca
     3421 caactcatta gcgaaagtaa aagtggatat gaaaattaca aaccacactt taaagaattg
     3481 caagatgctt atttgcttga aaataaggta atgcaaaaat tgagaaaaag aaataaatca
     3541 agtatctaca taccaaaaat aaacgctaag gtaaagtatt taatcactag cttaaatgat
     3601 gtatatttta atagtgagag aatggcagat attgaaactt acattaatag cgatgatacg
     3661 attatagagc tatggcagaa tgcaattgat ttttatagtg gtaaaatcaa tatgtttaag
     3721 atttttcaac cgcttttctt agatgtttta cttgtgggaa caagtatagc taaggttact
     3781 tggcataaag gaatgccacg cattgaaaga gtagatattg atagtatatt ctttgatcca
     3841 aatgcattaa atagtgaaga tgtaggttat atagttaatg aaatttacct aacttataat
     3901 caaatccatg aaagacaaaa gctaggattt tataaaaaca tagaaatcca aaagcttttt
     3961 gacgaagatg atgagtataa aaaagtgaag ctttatgata tctacgaaag aaaaagtgat
     4021 gatacttggg tggtttctac tctatttgaa agtaatttgc taagaaatga aatcgattta
     4081 aaagatggac aaccatttat ttggggttcc atgcttccac agctcaagaa aatagataat
     4141 gaaaactatg taagtgctta cggcgaacca ataatggctt cagctatgcc tttgcaagat
     4201 gaaattaaca tcacaagaaa tcttttaatc gatgctgtaa gatctcatat tatgccaaaa
     4261 ataatagtac caaaatcaat gggaataagc agagaagata tagaaacctt aggaaagcct
     4321 atatatacag atgaccccaa aggaattcaa atactgcctc ctccaaatat aaatagttct
     4381 ggaataaatt tgcaattatt agaaagtgag ctaacagagg taacaggaat tagtccacaa
     4441 aataatggcg cgcaaacagc aaataatgaa acagcaacag aaataagcat aaaagcacaa
     4501 gaaggcggta gaagaagtgc agattatatt agacaatata acgaaacctt tatagagcct
     4561 ttatttgata ggttcgcaat gcttgttttt aagtatggag aagatagttt ttttaatggt
     4621 tttcaaagag aggatattcc tagttttaga tttaaaatcc aaacaggtac aggagccatg
     4681 aataaagaag ttagaagggc gggaattcaa gctagcatgc aagtattttc acaactatat
     4741 caaatgtata tgagcatagg agatgcagat tctgcttatg ggattatcaa tgctagcaaa
     4801 gaacttacta aagaattatt accaatttta ggagtaaaga atgtaaatag cctatttgct
     4861 tttgagaata agcaagaaat gcaacaagga taaacaatgc tcaatattga aataaaaagt
     4921 gatatatcta aaaccaaagg aggaaagaat ttaatcgaat ttataaaagc aaaatatagc
     4981 gaatgttttt atatagctaa aaataacaac gaaaaagaag tgaggttaaa agccttagat
     5041 actatggctt ttttagacat aataatcaat aaaataaagg atgaagaaga tggaaaatga
     5101 tgctttaaaa gatttaatgc aagcaatatc agatgaaggt gatacaggac aagctactaa
     5161 caacaaagac tctgcgcaag tagtagaaaa tgaacctacg aatgagccta cacaagtagt
     5221 agacaacgaa cctgattata aagctatgtt tgagacttat aaaagtgaga atgatagcaa
     5281 actaaatgct ttaatgagtg agcttgaaac tttaaaaaat ccaaagaaag aaccaagcga
     5341 acaagaattg caaagacagc agtatttgaa agagttggga cttgatgggc ttgatgaaaa
     5401 actgaaaaga cttgaagagc ttgacaaaaa gcaaagagat aaagaagaac aagatgcatt
     5461 aatcgctaaa tatgcacaag tagaaagcga attaagaaaa gcttaccctg atgctgattt
     5521 aaaagctatg gcggaacttg ctacaaagtt aagtggttta ggtgaaggca atatagatag
     5581 ttggaaaacc ttacttaatt tggtcggaaa atcaagtaat gctaaaaaag ctgaagattt
     5641 atcaagcgca aatagcaata ttaaatctag tgattttaac gataaattaa aaaaaggcga
     5701 agttagcgaa atagatcttg gaaaagaatt attaagttta gtataaagga gaaatcatgg
     5761 attttataac agctttaaaa ggtggtacag gactaggctc tagctttgca gatactttga
     5821 tgaaaacaag caattttact ccaaatttag caagtagcag tggtggtttt ttaaatggat
     5881 taaaaaattc ttttagtaat tttggagatt ggttatttaa aagtagcgat acaaacaaaa
     5941 taactaattt tgatagatta ggaaatgttt taggcggtgc cggcgcttta tatggtgctt
     6001 acaatcagca aaagatggca caaaagaatt atgagttaca aaaagatgct tataacttca
     6061 ataagtatct agccaatgaa gagttaaaca gaagaaagaa tatggaaaat aaacttcaaa
     6121 atgtttggag taattaaata gatttggatt taaggagttt gttttaaagg gtaaatctta
     6181 accccttgta taaggggctt tgtttattga ttgttaattt gcattgacaa caataataca
     6241 aagtagtata ataactatta agatttgtag catcttattt caccgccttt ctaggtggta
     6301 atttagtgct aagggtggcg acccttggca ccacaccttt taaaattata cacaaacttc
     6361 cttaaatcct ttattttaaa agaaagaata aaggaaacaa aatggcattt tataacccac
     6421 aaagagtagt atttaatcct gatacaggcg ttatacaaaa cgcaggaaaa gtcggtggtg
     6481 tcttatatga catcatgagc aaaagttttg atgataaagt taaagctaat gagtttcagc
     6541 aagagcaaga tttaagaaag caacaaatgg aatttaatca ggctatgcaa aataatcagc
     6601 ttttgcaaaa tgaatttaat aatgctttag ccttgcgaaa atttgacctt gaaagacaaa
     6661 gacaagttca agataatgct ttaaattggg ctaaatataa agaagataaa gattataatc
     6721 aaaaatattt agattattta actggtaaaa atagtaatat agttactaat aaaacaaata
     6781 ataattcagg ctttagtata gatgctaatg gtaatttaag cgaaccgcaa acaatgagag
     6841 atgtttttag caaagaaagt aatggcgggg atttgtatca ttttgcaaaa accgctaaaa
     6901 cgcaaaatat aaatttaaat gatatttatg gatttggaga taccataaat caaaaattaa
     6961 gaaatactcc ttttagtaat agtaaaaact taaaacaaga attcgcagat aagctaaaag
     7021 ctgaaataaa tttagcacta gttaatatca caagtggcag gatgagcaat gaagataggc
     7081 atagattaga agaattggtt aaaacagata gtttttactt ctttgataag tatgctaaac
     7141 atgatattga aaaagcagta gaaatactat atagagtaaa aaatgatgcc ttaaaaaaag
     7201 aatatatgga tatttggaaa acagaaaggt atttaaaaga tagagataat atagaaaatt
     7261 attataacaa tatgtataaa aagctagaaa atgaaaaggc tatgataaaa gattttataa
     7321 atgctggaaa tattttagct tctcaagggc aaagagtacc attaaataag attctatcac
     7381 aacaaccgca acaacaatta aaccaaaatt ttttacaaca aaacaatatg attacattta
     7441 gataataagg ataaaagatg acaatacaaa taccacaggg tgcaaaaaca atgcaacttt
     7501 ttgatatgaa tatagatata ccagaaggaa aaacttatat agatattgat gataattttt
     7561 tgcagaataa atataatcaa tttatgcaaa ataatcagca acaaaacaat tttaattcac
     7621 aagaagaatt agctttagat ggtaagccta tgagtatgta tcaagcacca caagtaagcc
     7681 aaaatgagcc acaagaacaa ggagtatgga gtaaaataaa taagggtcta gaagatttta
     7741 ataaccttat agatccaaaa agaatgatat ctgaaggatt tgattatctt tctccaagag
     7801 ttacaagcgg tgaagaaggg gcaaggcaaa aaatagaaga tgcaacaaat caggtatcag
     7861 gtgggttgct acctagaatt tttactagcc ctagcaatga agagcaaaaa caaatttttc
     7921 aaatcgcata cgatgaaata aaaaaattag gatatgagcc atttttagaa ataaataatg
     7981 gagactataa atatataggc gttgataaaa atggaaaaga agttgatttt actcctagtt
     8041 ttagaaatac acttgctagt actaaaaatg agttagcatt ttctgtagct ggtggatatg
     8101 ctggaagctt agcaaaaaca gcagggcaaa caataggtaa aaaagcctta aattatttcg
     8161 caccatctgc aattggtgct ggtagcggtg ctgtatctga tcttcattcg caaagtaata
     8221 atacaggaat tgaagcaagt tatatggatt atgctaaaag gtttggaagt gcagccgcag
     8281 aagatgcctt agcaggtgct gtagttggat cagctataaa gggaatagga aaaacatata
     8341 aaagtgttgg tgatttaata agcagtgcaa aaacaggagc aagggccggt aaagatatga
     8401 tagatggcat ggcagtaaaa ggtggtaatt taggcaatag atttatagat aaaataagca
     8461 agacagatat acctgtggta ggaaaattta cagatggtgg cttgcaaaat gcagaaacaa
     8521 tttttaataa tcttacaaaa aatgtagaga ataaaaaaca aatagatgaa cttatagcaa
     8581 aagaaaatcc aacatactta gaaaatggaa agcctacaat agaaatatta aaaaacattg
     8641 tcgagcaagg acttaacaag aataatccac aatttataca agatagcgct aaaagaacaa
     8701 gttctatttt aaaaaatatt tcaaatgctt tacaaggagt tccaactact caaagaagag
     8761 aaatattatt aaaatcagct caagcttatc ccgaaatagg aagtttttta gatgatgttt
     8821 tgaaggctga taaggatgct agtatttctt ttttaaatat aattaaagaa caagatgaag
     8881 tatttaagaa caaaacaggt ttaaatggtg agtttgatgt taaggcttgg caaaaagata
     8941 atagctctta taaaaaaaga attaataatg aatatgctca agctataaaa agtatagatg
     9001 agcttaacaa cggctcaata aggttaagca aagaagattt agcaaagatt gaagagttta
     9061 aaaacaacaa ttttttagag caagatataa aaacaaatat tagtagcttt ctagaagata
     9121 ctattgataa agacttaagt gctgagcaaa tatttaactt aagaagtgct ataaataagc
     9181 aattagccac aggaaataag acatataata ctaaagaagc ttataggcta gtaaaagata
     9241 ctttagatga aactatgata aaaaatgcaa gtgataaaga actagcaaag aagattttag
     9301 aagatgctaa taaaaactat gcgttaaaag aaaattttaa taatagttat ctaggaaaaa
     9361 tcaaagacca agaaacaccc gaagcactcg cgcaaagaat agctaatggt gctagaaata
     9421 tcaatgaaga caaagattta aaaagagctt ttgaaggtat gaatgaagta gagcgaaaag
     9481 caaatgaaaa acatgctttt aatgcattac tagcaaaaca tagaattgaa gatataggat
     9541 atgattttaa gaacctagca aaagatatgg ataatgtaga atttgtaagt aaagatttaa
     9601 aatatgcaaa agaagtagta aatgtttatg caaaaattta tcaaaacaat aaagacttaa
     9661 taatgacggc tttagctagt agtggcaaaa aaacaaattc ttcaatagcc acaacaatac
     9721 agggtgtttt tgataggata ttaataagtg gtgtttttgc tagaatacat gctttagttc
     9781 cttttatgaa aagtgccaaa gaacaagcgt taagaaatca aatactagat gcattaaaac
     9841 ttgctaaaac caataaagaa gttatatcta atcttaaaaa cataaaaata gcggataaag
     9901 aacaaagtag aatttttaaa gatgctttag ataattatat taaagtagat aaagaacaaa
     9961 ataaaatatt aaaagatgca ctaataaaag aaggtgttat caaaggcgac aacttcttca
    10021 tggataaagc tgatccgagc aaagcaaaga gtgattatac tgctaaattt aatgtagaaa
    10081 aatggattaa taatgtttca ggaattttaa aagatgaatg ggtggtaaat ttaaaagcta
    10141 tggctaaaaa acaccctgaa atgtttaaaa acgaagcaga tgtatttaag gtaattaaag
    10201 agataaaaga caatcctact cattttttta aaaactatga tgatgaagtg gcattaatag
    10261 ctaaaccttt aaaagatgat aaggttggca atatagccat aaaaaaagat agtggcaaaa
    10321 ttatacatat taataaaaca aaaggtaagg atttggaaag attaaatcgt agaaataaag
    10381 caatgctgac aggtacgcca actcctgcaa ccactaaagg cagtactacc aatgtggaag
    10441 gcgatttatt acagcattct tttaaaaatt ctacccaaac taaacctaaa acaaacttaa
    10501 tggatgatat aaaagagaac attaaggcaa aagaagtaga gaaaaagaat aaaaaaagcg
    10561 taaagcaaaa acttgatgaa aaaatacaaa atgataaaaa agctagagaa gaaagaatta
    10621 agaaaataaa acaagttata gctagaaagc aaaaaataga taaggttaga gataaaaaaa
    10681 ataacaggga aatagcagga aaaataggca cttatacgct aaaaaatctt attaaattaa
    10741 aagaaaggag cgaagataat aaaaattaag ggcttaaagt ccttgatttt tatctcgttc
    10801 tttaaaagaa tttggaaaaa attatgcaga atattattac gatggaaaag gtgctttaca
    10861 aaaactactc attgaaaaac aaggacaggt agctggggct tttcatagga aagatttagg
    10921 agatattgat ttggtttggg gagaggtaat agataagata aaacataaag gttatggttt
    10981 agctcatatt atcgataagc atcctgagtt ggacttgaaa ttaattagcg atattgtgga
    11041 taaggggaaa ttaaataacc aaaacaacat aagatataga atagaatata aaaattatat
    11101 tataggttta agcagtgaat ataaaggaaa taaaagaact tttataatta cagcttttga
    11161 aagatacaaa ggataaaaac aacactttca ccgattgttt ttttgcggtt agctcggaca
    11221 atttactaac caacctttta tcaattatag cataaattca tgtaattatt ttttaaaata
    11281 taaaagataa ttggaaggga gataatagga ttgtgactgc atataatttt tattaatatt
    11341 atcgccccta gctcagccga tacgcactaa agctaggctt aatactgaca ctttaagcgt
    11401 gagtagtgtc aatggcgatt attaattata gcatatttta ttttataaaa ggttttatag
    11461 attttgaaat ttcatctaaa aatagatctt ttaaactaat acgatatggt atataaactt
    11521 tttccaaaaa attagaaaaa ggctaaagcc ttatactgct ttcatttaaa atcaaagtaa
    11581 gagattttct ttctgaaaaa tttgcagtag ttactatagt atatcctttt gctcttattc
    11641 tttgcaaaat atattttgaa atattaaatt gagcatttaa gaaatttaaa tggttttctg
    11701 acatgggcgt ttttcttaaa tgagataaaa atggattttt atcattattt ttattagact
    11761 ttaaaccatt tttaaattca taatcctcat aattgctttt ttgaacatca tcatgtatca
    11821 tatgttctct catattgtca taaaaatctt ttagactgcc attatctaat atttgtccta
    11881 atatttcttt tggaacatca tttaaatatg gattttttac tattagatta tcaatattaa
    11941 gtggtgtaaa ataataagat ttttcataat ttaacacaag aaataaatta aaagtatttt
    12001 cgtaatagtc aaaataagta ttaactttta cttgatgata ttgataactt agctttaaac
    12061 aatcttgagg ttttcttaaa tttaacatta agtatttttg tttcaaaagt tctcttgtat
    12121 tttccatcgt tgttttattt atagttattt tgcctcttac attagaaaat gttttttctt
    12181 cttcatattt ctcaagccaa gtatcaaccc aaataggaat gggcttatta ttatcattcc
    12241 aattgctaac gctactataa gctaagcctg tcatattgca aaaatcttgt cttgtaaatc
    12301 ccaaactttt aattttttca tcaaactctt tttttaacat aattatc
//
LOCUS       DBBXRO010000043        12283 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.043, whole genome shotgun sequence.
ACCESSION   DBBXRO010000043 DBBXRO010000000
VERSION     DBBXRO010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12283
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.043"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..318)
                     /locus_tag="ACJFEZ_000881"
     CDS             complement(<1..318)
                     /locus_tag="ACJFEZ_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0917011.1"
                     /translation="MQIVQTLETINVNTDDINVFQYFKDLITKNFTKVVGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAG"
     gene            complement(320..1039)
                     /locus_tag="ACJFEZ_000882"
     CDS             complement(320..1039)
                     /locus_tag="ACJFEZ_000882"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HGG0917012.1"
                     /translation="MLEIGFCTLEDECPYLKDRRSRIEYKYIENCSKEINSELIRRGW
                     RRFGRYFSRPICKDCKECLSLRILVDEYQFSRSERRVINKNTNTKIILRKPLLSNEHL
                     FLYDKYHRFMEEKKTWKRYDLNFRQYYNLYVDGFMNFGYELAFYVEDKLVCVDLIDWL
                     EDGISSIYCFYDPDFSHLSLGKFSLLSEIKIAKKEKLKYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEILWER"
     gene            complement(1039..1275)
                     /locus_tag="ACJFEZ_000883"
     CDS             complement(1039..1275)
                     /locus_tag="ACJFEZ_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917013.1"
                     /translation="MDFFDSLKSIKKEMQTHSKEQKSPKNSNKKDMKHFNEEIKTQPP
                     EMNLDKEMQEVFLKQEKLQDEFLEFIKNADIKKI"
     gene            complement(1275..2717)
                     /locus_tag="ACJFEZ_000884"
     CDS             complement(1275..2717)
                     /locus_tag="ACJFEZ_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HGG0917014.1"
                     /translation="MVQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVRRIIEIAKACGADAIHPGYGFLSENYDFAKACEEAGII
                     FIGPKSEVIHKMGNKNIARKLMAQNGIPIVPGTEKLNAYSMDEIKVFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEEELENAFDSCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPVTEEITGVDLIVRQIRIAGGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFTIDIRTTIPFLIAITKTREFRRGYFDTSFIETHMQELL
                     ENTEDRHQDNKEEVIAAIAATLKKIRESRE"
     gene            2852..4015
                     /gene="ftsW"
                     /locus_tag="ACJFEZ_000885"
     CDS             2852..4015
                     /gene="ftsW"
                     /locus_tag="ACJFEZ_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HGG0917015.1"
                     /translation="MIADKKLFYLSCILISIGIVFSYSLTVFTVLFFDYNEFHFFIRQ
                     LFFGLSGILIMFFISRLDPDKILAKRIILAILIGSFICIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIKHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGILIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWMADALRVSGNSEPYQISHSLNAIAHGGLFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLFGLGLICFIYLWMILRIFRIAGRCEEKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            4012..5028
                     /gene="murG"
                     /locus_tag="ACJFEZ_000886"
     CDS             4012..5028
                     /gene="murG"
                     /locus_tag="ACJFEZ_000886"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HGG0917016.1"
                     /translation="MTIVLTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDRAW
                     FESETRFKAKFFLSSRGVVNQNKLGKINSLLHTFKLSKECKQIFKDYDIKAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNKLLKPFAKQFYSAFEKEIVPYPVADKFFE
                     KARIRKELKNIIFLGGSQGAKFINDLALNLAPELQKKGINIIHQCGKNELEKYQQAYK
                     DLNIQADVFDFSPHLEEKMQNADLAISRAGASTLFELCANTLPSIFIPYPHAAKNHQY
                     FNAKFLQDKALCQIFMQNNTYPDEILKAIFKLNLEDISTKLKDMAQKNGADILLEKAL
                     KLIK"
     gene            complement(5021..6181)
                     /locus_tag="ACJFEZ_000887"
     CDS             complement(5021..6181)
                     /locus_tag="ACJFEZ_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917017.1"
                     /translation="MLSFRKIFWLNVAIVIIVAFNLRAPITAIGPMIDIIQDEYNLNS
                     TLAGVLTSLPLIAFGSISFIVGYFSPIRAIIVGIFLIFIAELIRSYLGVYGLFLGMLG
                     IGCGIAIANVLLPSFIKEKFPKKMASMMGIYSLVLSISSIAGIALSMPLLNIFDLAGA
                     MVFWSVFSFIALMIYYPQAKNGRFFRTKKKESKKINLLKNPTTWKITLFMGFQSFLAY
                     SLFFWYVQIIVEKGYDKDFATNIVLFSQLVAAPISLFGPLLLGKLKKSLHTPYIAILC
                     AMYAVSFGILLAFDTRFMIMLAAFIVGFPWGGVFGIALLFIAQKSSNAKIAARLSAFA
                     QGFGYLIAAQGQWIIGFFHDMFGNFTSSICILFIVGILVNIFGYLAYKSKVI"
     gene            complement(6189..7043)
                     /locus_tag="ACJFEZ_000888"
     CDS             complement(6189..7043)
                     /locus_tag="ACJFEZ_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HGG0917018.1"
                     /translation="MKKYVLSLALVGASLLGASELKYQEFDGFKSPESIFVDKNSVYV
                     SNVGEKLEPLAKDNDGFISKLDKNGKVLEHKFISNLNAPKGMMEVVNTLYVVDIDVVR
                     GFDLKSKKEVFNLPIKGAIFLNAIEKLNDDTLLVSDTGTGLVLKVDLKAKKYDELLKL
                     DIAKFGGPNGLYLDRKNDKLFIAGYHPDGASGGVVMSYDLNDKKLSVIKNEKEAYDGI
                     VPYENALLVSSWGENLNGVIYRLEDDKALKLDLPSIKGPADIFIEGDTLWIPKMVEGK
                     ILKVELKN"
     gene            complement(7106..7996)
                     /locus_tag="ACJFEZ_000889"
     CDS             complement(7106..7996)
                     /locus_tag="ACJFEZ_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HGG0917019.1"
                     /translation="MEQILSLPQDLKQLKGVDYKNFKSCTFAKYTQVSASHSSFVNVG
                     SHLLTFVRKGYKILHTASKDYKIDSYETLFLKAGNYTLSNVGLSSGVYEAYLFFFDNA
                     FLIELIYKYKDLFKLEQASEESEIFWVKNDKILQGILESFTPHFDENTQILDPIVSLK
                     FEEIFLHLLLNKNTYFIGFLAGILKEFRLDLSQLFEYCGREFVSVSEMADFAKLDFAT
                     FSREFKKCFGQSPKKWLDEKRLQKAKVLLEFSKKNVNEIANECAFSSVAWFIERFKEK
                     YNQTPKQYQKSKNLYFLSKN"
     gene            complement(8011..8616)
                     /locus_tag="ACJFEZ_000890"
     CDS             complement(8011..8616)
                     /locus_tag="ACJFEZ_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HGG0917020.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQVEKLAKSGIDAFVLREKDLSEF
                     EYYDLAKEVLAICAKHKTTCFLHFFDRECLKLGHRYFHMPLALLRQEPKMSKYFHMIG
                     TSVHSKEELLEAMNYGVNYAFVGHIFESSCKKDLEPRGLEFLNSLLSFSQIPLYAIGG
                     INVQNIASFKDINVAGVCMREVLMREKDVKKYLVECKRNLL"
     gene            complement(8606..9751)
                     /gene="thiH"
                     /locus_tag="ACJFEZ_000891"
     CDS             complement(8606..9751)
                     /gene="thiH"
                     /locus_tag="ACJFEZ_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HGG0917021.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSTAEDFIEELAFKSAKTKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEDEIHEEMQAIAKTGLQEILMLTGEGREFASVEYIAKACKIAR
                     EYFKVVGVEIYPMNEDEYKILHENGCDYVTIFQETYNPLKYSKIHLGGEKRIFPYRFN
                     GQERALRAGMRGVAFAALLGIDDFRKDALATALHAYFLQKAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERVGFRDEVVKLGATKMSAGVS
                     VGIGEHKGEKKGDGQFEISDERGVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(9754..10530)
                     /locus_tag="ACJFEZ_000892"
     CDS             complement(9754..10530)
                     /locus_tag="ACJFEZ_000892"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HGG0917022.1"
                     /translation="MQENLKNDSLKIGKYEFKSRFILGSGKYSLELIKSAIEEAKAEI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VIGDSKYLLPDNYETIKACELLAKEGFTPLPYMHADLYVARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGTPAQACEAMQMGVSAVMANTAIAEAKDI
                     ALMAKAFSLAIQAGRAGYLAGLASVSEAKASSPLTGFLRD"
     gene            complement(10534..11337)
                     /gene="thiF"
                     /locus_tag="ACJFEZ_000893"
     CDS             complement(10534..11337)
                     /gene="thiF"
                     /locus_tag="ACJFEZ_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HGG0917023.1"
                     /translation="MMRIKFNGKELDTKLSTSLDFFKSVSKNENDVWIINGFATKENI
                     KIHENDELFCIERNALPPKDALDAMMRARHTPKLHDKLKISSVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVVEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYIKTEICTL
                     KIDEENLPDLFKGIDIVCEAFDGALAKAMIAQNFHRFYKDTTLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(11334..11525)
                     /gene="thiS"
                     /locus_tag="ACJFEZ_000894"
     CDS             complement(11334..11525)
                     /gene="thiS"
                     /locus_tag="ACJFEZ_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HGG0917024.1"
                     /translation="MIINGEKFELKELKFMDFIKEKGFKIELIALELNGEIVPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(11515..>12283)
                     /locus_tag="ACJFEZ_000895"
     CDS             complement(11515..>12283)
                     /locus_tag="ACJFEZ_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type ISP restriction/modification enzyme"
                     /protein_id="HGG0917025.1"
                     /translation="WTFYSEKQGFLGRPRYKTMQHFLDKENLGLCFIESSIHDYFSHS
                     IVCSNITDGNFFGFRSFTAPLYLYVNNEKIPNFTSEFLAYKENHKILKDKSPEEILYF
                     IYANLYNPRYREKYLEYLKTGFARINFEVEQKTFDDFATLGKKLVELHLFKRDLKDEI
                     DFIFLKEDKKANFKIEKYQEKDRFIDNKIILNEDLAISPISAEIWQFTIGGYQVIKQW
                     LKYRNDYKCSKEELEHLLKMCKVIKETINLQKELNDY"
BASE COUNT         3993 a         2333 c         1684 g         4273 t
ORIGIN      
        1 acccgcaaca aaatcaatct tgataaacaa cataggctta agcatattat tttgctcaaa
       61 aattaatcta aaagttttaa aatgagcatc ttgtaaattc tctatacctt catttgtgct
      121 tttacgatat ttttgatcta aaacttttaa gaaataacgg cgctgtggaa tttcattttc
      181 ttcaaaaaaa gaaaaaattt tatttttacg ccctactacc tttgtgaaat ttttggtaat
      241 taagtcttta aaatactgaa aaacattaat atcatcggta ttaacattga tagtttctaa
      301 agtttgcacg atctgcatct catctctccc ataaaatctc attctcaaaa agctcttttg
      361 tgccttttaa aatttcattg ggtgtataat cggctttata cgataaagat tgacactttt
      421 ttacaaaata tcccaaataa atatatttta atttttcttt tttggctatc tttatttcgc
      481 taagtaaaga aaatttaccc aaagaaagat gagaaaaatc tggatcataa aagcaataaa
      541 tactagaaat tccatcttca agccaatcga ttaaatccac acaaacaagc ttatcctcca
      601 cataaaaagc aagctcatag ccaaaattca taaatccatc aacataaaga ttgtaatatt
      661 gtctgaaatt taaatcatat cttttccaag tttttttctc ttccataaag cggtgatatt
      721 tatcatacaa aaacaaatgt tcattactta gtaaaggttt tcttaatatg attttggtat
      781 ttgtgttttt attgatcact cttctttcgc tgcgcgaaaa ttgatattcg tctactaaaa
      841 ttctaaggct taaacattct ttgcaatcct tgcaaatagg acgagaaaaa tacctaccaa
      901 aacgacgcca gccacgcctg ataagctcgc tattaatttc cttagagcaa ttttctatat
      961 atttgtactc tatcctagaa cgcctatctt ttagataagg acattcgtct tcaagagtac
     1021 aaaaaccaat ttctagcatt aaattttctt aatatctgca tttttaataa attccaaaaa
     1081 ctcatcctgt aatttctctt gttttaaaaa aacttcttgc atttctttat ctaagttcat
     1141 ttctggtggc tgtgttttta tctcttcatt aaaatgcttc atatcctttt tatttgaatt
     1201 tttagggctt ttttgctcct tagaatgagt ttgcatttct ttttttatgc tcttaagact
     1261 atcaaaaaaa tccattattc tctactttcg cgtattttct ttaaagtagc tgcgattgca
     1321 gcgataactt cttctttatt atcttgatgg cgatcttcgg tattttctaa taattcttgc
     1381 atatgagttt ctatgaaaga agtgtcaaaa taccctcttc taaattctct tgttttagta
     1441 atcgcgatca aaaatggtat agttgttcta atatctatgg taaattcttt caaagctctt
     1501 tcaagtttat taaccgctaa atcataactt gtagctttta tgattaattt tgcaagcata
     1561 gaatcataat aaggaggcac ggtataatct ttataaatat gactgtccac ccttacagat
     1621 ggtccaagtg ctggataata ctcccctatc ttacctggac ttggaatgaa atttttccat
     1681 acattttcag ccgtaatcct tgcttctata gcaaaacctc ttggcttgat atcactttgt
     1741 tctagatcta aaatttcccc gcctgcgata cgaatttgac gcacgatcaa atccacaccc
     1801 gtaatttctt cagttacagg atgttctact tgaattcttg tattcatttc cataaaataa
     1861 aagcggttat aatcatcaag taaaaattct atagtccccg catttgtata gccaacagcc
     1921 ttagcagcag ccacagcagt aacacccata gtttttctta gattgtctga aattccagga
     1981 caaggtgcga tttcgatcac tttttgatgt cttctttgaa tagaacaatc cctttcgcaa
     2041 agatggataa tatttccata attatcccct aaaatttgaa attctatatg gcgaggattg
     2101 actacatatt tttccataaa tacttcatca ttgttaaaat aagtcaatgc ttctctttta
     2161 cacgaatcaa aagcattttc taattcttct tctttatgaa cgacgcgaat tcctcgtccg
     2221 ccaccacctc ctgaagcctt taaaatcaca ggatagccta ttttttctgc aaatactttg
     2281 atttcatcca tgctataagc atttaatttt tctgttcctg gaacgatagg aatcccattt
     2341 tgagccatta atttacgagc tatgttttta tttcccattt tgtggataac ttcagatttt
     2401 ggacctataa aaataattcc tgcttcctca caagctttag caaaatcata attttcactt
     2461 aaaaatccat aaccaggatg tatagcatca gccccacaag ctttagcaat ttctataatt
     2521 cttcttacat ccaaataacc ccttatagca tctgtgccta tgcgataagc ttcatcggca
     2581 atttttacat gcaaacactc acgatcaggt tctgtaaaaa ccgcaacact tttaatatgt
     2641 aaatccctac aagcacggat tacacggaca gctatttcag cacgatttgc tataagaatc
     2701 ttatgaattt gtaccataat ttgcctttat aaattttatt tacatactca tattctagca
     2761 aaatatcctt acaaaaactt agcaaaaaat ttaatttatt ttagttataa taaactttta
     2821 aattattccg aaagaaaaat tacaatttta catgattgcc gataaaaaat tattttattt
     2881 aagttgcatt ttaataagca taggtatagt attttcatat tctcttactg tttttactgt
     2941 gctttttttt gattataatg aatttcactt ttttatacgc caactctttt ttgggcttag
     3001 cggtatatta atcatgtttt ttatttctcg tcttgatcct gataaaatac ttgctaaaag
     3061 aattatccta gccatactta taggctcttt tatatgtatt attatcctgc cttttttacc
     3121 ctctgctttg gcgactgcta gtggaggcgc aaagcgttgg attcgcttag gacctctttc
     3181 tatttcacct gtggaatttt ttaaaatagg actgatttat tttttagctt ggagttatac
     3241 aagacgcatt gatgatagca aaaaagcgat taagcatgaa gctttaattc tcttgcctta
     3301 ttgtatttta gcttctatcg tgataggcta tatttacatc acacaaaatg atttagggca
     3361 aagcgttatt tctttctttt taattttagc tctagctttt tttgcaggtg ctagcaaaag
     3421 actttttgcc tttggaattt taatcattat gatgatagga atcatggtaa tttttagcaa
     3481 tcaaaggcgt atccaaagga tagcttcttg gtggggaaat atacaagatg ctttcttgcc
     3541 tatgcttcct gattggatgg cagatgcttt aagggtaagt ggcaatagcg agccttatca
     3601 aatttcacac tccttaaatg ccatagctca tggagggtta tttggtgaag gacttgggct
     3661 aggtactttt aaacttggtt ttttaagtga ggtgcatact gacttcgttc tttcaggcat
     3721 cacagaagag ataggacttt ttggcttggg gcttatttgt tttatttatc tttggatgat
     3781 tttaagaatt tttagaattg caggaagatg tgaagaaaaa caagatttta tattttgttc
     3841 aggcattgct ttgcttttac tcttttcatt ctttatgaat gcctttggta tcatttctct
     3901 tacgccttta aaaggggttg cagtacctct tttaagctat gggggaagtt caatgtgggc
     3961 aatttgtata ggaattggat atgttttaat gatttcaaaa aaggttaaat tatgacaata
     4021 gttctaacag gtggcggaac gggtggacac ctagccattg tgcgatgttt actagaaagt
     4081 gcgattaaaa aaaacataga gtgtgtttat ataggaagtc aaaatggtca agatagagct
     4141 tggtttgaaa gcgaaactcg ttttaaagcg aaattctttt taagttctcg tggggttgtc
     4201 aatcaaaaca aacttggaaa aatcaattcc ttactccaca cattcaagct tagtaaagaa
     4261 tgtaagcaaa tctttaaaga ttatgatatc aaagcggttt ttagcgtagg aggatacagt
     4321 gctgctcctg cttcttttgc tgctttgttt tcacacttgc ctttatttat tcacgagcaa
     4381 aattcaaaaa gcggctcttt aaataaactt ttaaagcctt ttgctaagca attttatagc
     4441 gcttttgaaa aagaaatcgt accctaccct gtggcagata aattttttga aaaagcaaga
     4501 attcgcaaag aattaaaaaa tatcattttt ctaggcggat cccaaggagc taaatttata
     4561 aacgacttag ccttaaacct agctccagaa cttcaaaaaa aaggcattaa tatcattcat
     4621 caatgcggaa aaaacgagct tgaaaagtat caacaagctt ataaagactt aaatatacaa
     4681 gctgatgtat ttgactttag ccctcattta gaagaaaaaa tgcaaaatgc agatttggct
     4741 atttcgcgag cgggtgcaag cacacttttt gaactttgtg ccaatactct accaagtatt
     4801 ttcataccct accctcacgc tgctaaaaat catcagtatt ttaatgctaa atttttacaa
     4861 gataaagctt tatgtcaaat ttttatgcaa aataacacct atcctgatga aattttaaaa
     4921 gctatattca agctaaattt agaagatatt tctacaaagc ttaaagatat ggcacaaaaa
     4981 aatggtgcag atattttgct tgaaaaggca ttaaagctta tcaaataact ttgcttttat
     5041 aggctaaata tccaaaaata ttaacaagta tgcccacgat aaaaagtata caaatagagc
     5101 ttgtaaaatt tccaaacata tcatggaaaa atcctatgat ccattgccct tgcgctgcga
     5161 ttaaatatcc aaacccttga gcaaaagccg aaagtcttgc agctattttt gcattagaac
     5221 ttttttgagc gataaaaagc aaagcgatgc caaaaacacc accccaagga aaccccacaa
     5281 taaatgcagc aagcataatc ataaaccgag tatcaaatgc aagtaaaatt ccaaaagata
     5341 ccgcatacat cgcgcacaat atagctatat aaggcgtatg taaactcttt ttaagttttc
     5401 ctaaaagcaa gggaccaaaa agagagattg gagcggctac aagttgagaa aaaagtacta
     5461 tattggttgc aaaatcttta tcatagcctt tttctacgat tatttgcaca taccaaaaaa
     5521 acaaagaata agccaaaaaa ctttgaaaac ccataaaaag agtgattttc caagtggttg
     5581 gattttttaa aagattgatt tttttactct cttttttctt ggtacgaaaa aagcggccat
     5641 ttttagcttg gggataataa atcattaagg caataaaaga aaaaaccgac caaaaaacca
     5701 tagcacccgc taaatcaaat atatttaaca aaggcataga taaagcaatt cctgctatag
     5761 aagaaatgct taaaacaaga ctataaattc ccatcatact tgccattttt ttaggaaatt
     5821 tttccttaat aaaacttggc aataacacat tggcaatagc tataccacaa cctataccaa
     5881 gcattcctaa aaataaacca taaacaccta aataagaacg aataagttct gcgataaaaa
     5941 taagaaaaat tccaacaata atcgcacgaa taggagaaaa ataacccact ataaaagaaa
     6001 tgctaccaaa agctatcaaa ggaaggctag taagcacacc tgcaagagtg gaattaagat
     6061 tatactcatc ttggataata tcgatcatgg gtcctatcgc agtaatagga gccctaaggt
     6121 taaatgctac aattatgaca atagcaacat ttaaccaaaa aatttttcta aaagaaagca
     6181 ttaaatcctt aatttttaag ttctacttta agtattttac cttctaccat cttaggaatc
     6241 cataaagtat caccctctat aaagatatct gcaggacctt tgatagaagg caaatcaagc
     6301 tttaatgctt tatcatcttc taaacgataa atcaccccgt ttaaattttc accccaagaa
     6361 cttacaagca aggcattttc ataaggaacg attccatcat aagcttcttt ttcattttta
     6421 atcacgctta gttttttgtc atttaaatca taactcatca caacaccgcc actagcacca
     6481 tctggatgat atcctgctat aaaaagctta tcattttttc tatctaagta aagtccatta
     6541 ggaccgccaa atttagcgat atcaagtttt aataactcat catatttttt cgcttttaaa
     6601 tccactttta aaacaagtcc tgtgcctgta tcgcttacca aaagtgtatc gtcatttagt
     6661 ttttcgatag catttagaaa aattgcaccc tttataggca aattaaacac ttcttttttg
     6721 cttttcaaat caaaaccacg caccacatca atatccacca cataaagtgt atttacaact
     6781 tccatcatac cttttggggc atttagattg cttataaatt tatgctcaag cactttgcca
     6841 tttttatcaa gcttagagat aaaaccatca ttgtcttttg ccaaaggctc aagtttttca
     6901 cctacattag atacatatac agaattttta tctacaaaaa tactttcagg gcttttaaag
     6961 ccatcaaatt cttgatattt caactcgctt gctccaagca aacttgctcc aacaagcgct
     7021 aaacttaaaa catatttttt catacttttc tccttttgtt aaaaatattt atgctgatta
     7081 tattgattta gatagaaaaa gtgtgctagt tttttgataa aaaatacaag ttttttgatt
     7141 tttgatattg cttaggggtt tgattgtatt tttctttaaa tctctcgata aaccaagcca
     7201 ctgaagaaaa agcacattca ttagctattt catttacatt ttttttagaa aattcaagca
     7261 aaactttagc tttttgcaat cttttttcat ctagccattt tttaggactt tgcccgaagc
     7321 attttttaaa ttctctagaa aaagtagcaa aatcaagctt tgcaaaatca gccatttcgc
     7381 tcacgcttac aaattctctc ccacaatact caaaaagctg cgaaagatct aaacgaaatt
     7441 cttttaaaat tccagctaaa aagcctatga aataagtatt tttatttaaa agtaaatgca
     7501 aaaaaatctc ttcaaattta agactgacta tgggatctaa aatttgtgta ttctcatcaa
     7561 aatgcggggt aaaactttct aaaattcctt gtaaaatttt atcatttttt acccaaaaaa
     7621 tttcactctc ctcacttgct tgttctagtt taaaaagatc tttatactta taaataagct
     7681 cgattaaaaa agcattatca aagaaaaaca aataagcttc ataaacaccg ctactaagtc
     7741 ctacattgct taaagtataa tttcccgctt ttaaaaataa ggtttcataa gagtcgattt
     7801 tatagtcttt tgatgccgta tgtaaaattt tatatccttt tcttacaaag gttaaaagat
     7861 ggctgcctac attgacaaaa gaagagtgtg aggcgcttac ttgggtatat tttgcaaaag
     7921 tacaggattt aaaattttta taatccacac cttttaattg ttttaaatct tgtggcaagg
     7981 aaagaatttg ctccattgtt tcactcttta tcaaagcaag tttcttttac attcaacaag
     8041 atattttttc acatcttttt cgcgcattaa aacctcacgc atacaaacac cagctacatt
     8101 gatatcttta aagcttgcaa tattttgtac attaatcccg cctatagcat aaagtggaat
     8161 ttggctaaaa gaaagtaaag aatttaaaaa ttcaagcccc cttggctcta aatctttctt
     8221 acaagaactc tcaaaaatat gacctacaaa agcataattt accccataat tcatcgcctc
     8281 taaaagctct tctttactat gcactgaagt gcctatcata tgaaaatact tactcatctt
     8341 tggctcttgc cttaacaaag caagtggcat atgaaaatag cgatgtccta actttaaaca
     8401 ctctctatca aaaaaatgca aaaaacaagt tgttttatgt ttagcacaaa tagctaaaac
     8461 ctctttagcc aaatcataat actcaaattc actcaaatcc ttctctctaa gcacaaaagc
     8521 gtctatgcct gatttagcaa gcttttctac ttgttttaga aagtctatct cgacacattt
     8581 tctatcgctt atagcaatga tttttttatc ccacatagat actatcgctc atcacagctt
     8641 gtaaattgga tcttttaagc atagctaaaa tttcatccac gcctcgttca tctgaaattt
     8701 caaattgtcc atcacctttt ttctcgccct tatgctctcc tatacccacg cttactcctg
     8761 cgctcatttt tgtcgctcca agttttacaa cctcatctct aaatcctact ctttcacgac
     8821 ttgatatagt aatacctgca aaaggtaaaa aaagtctata agcacaaagt acttgcaaga
     8881 ggcgtttttc gcttacatct ttagggtgaa ttttagcatt attgataata ggtcttaaac
     8941 gaggtactga aatagaaatt tcagcatgcg gataagcctt ttgtaaaaaa tacgcatgaa
     9001 gagctgttgc aagtgcatct tttctaaaat catcaatccc caaaagtgct gcaaaagcta
     9061 ctcctcgcat acccgctctt aaggctcttt cttgcccatt aaaacgataa ggaaaaatac
     9121 gcttttcacc ccctaaatga attttagaat actttaaagg attgtaagtt tcttgaaaaa
     9181 tggttacata atcacagcca ttttcatgca aaattttata ctcatcctca ttcataggat
     9241 aaatttcaac acctacaacc ttaaaatact ccctagctat cttgcaagcc tttgcgatgt
     9301 attctacgct tgcaaactcc cttccttcac ctgttagcat tagaatttct tgtaaacctg
     9361 ttttagcaat agcttgcatt tcttcatgaa tttcatcttc gctaagcttg gctcttgcga
     9421 ttttatttcc tttttgaaaa ccgcaataaa cacatttaga attacaataa tttgataaat
     9481 aaagtggagt aaaaagcgag atagaattcc caaaatattt ttgcttggtt ttagccgact
     9541 taaaagctaa ttcttctatg aaatcttctg ctgtgcttga aagcaaagct tttaaatgtt
     9601 ctatacttaa atgcgtttga tttaaagcat ttttaacatc tttggcgcta aattgactct
     9661 catcatagct ttgaacttga cttaaaacct tgtttaaaat ttcgcttttt atttcctgca
     9721 tgtgaggtaa atactgcata taatcctgca taatcaatcc cttaaaaagc ctgttaatgg
     9781 agaactagcc ttagcctcac tcacgcttgc taaacccgct agataacccg ctcttccagc
     9841 ctgtatagct aaagaaaatg cttttgccat caaagcgata tcctttgctt cagctatagc
     9901 tgtatttgcc atcactgcac ttactcccat ttgcatagcc tcgcacgctt gtgcaggagt
     9961 tccaatacct gcatctacaa tgataggcaa atcgatctca ttaagtaaaa tttgtataaa
    10021 ttccttagca cacaagcctt tattgctccc aataggtgct gctaaaggca tgatagctgc
    10081 agcccctgca tcacgcatag ctctagctac ataaagatca gcatgcatat aaggcaaagg
    10141 ggtaaagcct tcttttgcta aaagttcaca agccttaatg gtttcataat tatcgggcaa
    10201 caaatactta ctatcgccta taacctctat ctttataagc tctccacagc caagctctct
    10261 agaaagtctt gcgatacgca aagcttcatc agcatttcta gctcctgaag tattaggcaa
    10321 gagggttata tttttaggga tataatcaag tatattagca atctcacccg tatttgcacg
    10381 gcgcaaagcc agtgtaatga tctctgcttt ggcttcttct atggctgatt ttataagctc
    10441 taaagaatac tttcctgatc ctaaaataaa tcttgattta aattcatatt ttcctatttt
    10501 taagctatca ttttttaaat tttcttgcat tttttactcc ttatttgcca aaagctctaa
    10561 gacaagattg ctttgatgtc cagcgcaaat atttacacgc ggtgccataa gtccatttcc
    10621 cactttagca ccatttacca aatctccaca cacatagaaa tttttagcga tttttcttgt
    10681 ttgtatacta ttgctatcgc catatcctgc aagccctgaa gcacagatta aagtagtgtc
    10741 tttataaaat ctatgaaaat tttgtgctat catagccttt gcaagcgcgc catcaaaagc
    10801 ctcacagact atatctatac ctttaaataa atcaggcaaa ttctcttcat cgatttttaa
    10861 agtgcaaatt tcagttttga tataaggatt tatttcactg atttgctctt ttaaagcttc
    10921 ggttttaaat ttccccaaat cacttacgcg gtaagcttgg cggttaagat tgctaggttc
    10981 aaccacatca aaatcaatca gctttaaata ccccacaccg cttcttgcta aatttatcgc
    11041 tatatgtgag ccaagcccac ctaaaccaca aaccgctacg ctcgaaatct taagcttatc
    11101 gtgaagtttt ggcgtatgtc ttgctctcat catcgcatct aaggcatctt ttggaggtag
    11161 ggcatttctt tctatacaaa aaagctcatc gttttcgtga atttttatat tttctttcgt
    11221 tgcaaaacca ttgataatcc acacatcatt ttcattttta cttacacttt tgaaaaaatc
    11281 caaactggtg ctcaattttg tatctagttc cttgccatta aatttaattc tcatcagcca
    11341 cctcctacaa aacttacaat ttcagcttta tcgttttctt ttaaaatcaa attttcaaat
    11401 tcgctcttag gtacaatctc tccatttaat tccaaggcga taagttcgat tttaaaaccc
    11461 ttttctttga taaaatccat aaatttaagc tctttaagct caaatttttc tccgttaata
    11521 atcatttaat tccttttgta aatttatagt ttcttttata actttacaca tttttagcaa
    11581 atgctctagt tcttctttgg agcatttata atcattgcga tattttaacc attgttttat
    11641 gacttgataa ccgcctatag taaattgcca aatttcagca cttataggac ttatggccaa
    11701 atcttcattt aagataattt tattatctat gaagcgatct ttttcttgat atttttctat
    11761 cttaaaattt gcctttttat cttcttttaa aaagataaaa tcaatctcat ctttcaaatc
    11821 tcttttaaac aagtgaagtt ctacaagttt tttacctaaa gtagcaaaat catcaaaagt
    11881 cttttgttct acttcgaaat taatcctagc aaagcctgtt tttaaatact ctaggtattt
    11941 ttctctatat cttggattgt ataaatttgc atagataaaa tacaaaattt cctcaggact
    12001 tttgtctttt aagatcttgt gattttcttt gtaggctaga aattcgcttg tgaaatttgg
    12061 aattttttca ttattaacat aaagatagag tggggctgta aaacttctaa atccaaaaaa
    12121 atttccatcc gttatattgc tacaaacaat tgaatgagaa aaataatcat gaattgatga
    12181 ttctataaaa caaagtccta aattttcctt atctaaaaaa tgttgcatgg ttttatatct
    12241 agggcgtcct aaaaatcctt gtttctctga ataaaaagtc cat
//
LOCUS       DBBXRO010000044        12166 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.044, whole genome shotgun sequence.
ACCESSION   DBBXRO010000044 DBBXRO010000000
VERSION     DBBXRO010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12166
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.044"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..518
                     /locus_tag="ACJFEZ_000896"
     CDS             <1..518
                     /locus_tag="ACJFEZ_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917026.1"
                     /translation="EFNLTLPFIFDDYITTASVALPILKKRNTSYENLNIANNHQKFT
                     TSNAFDFDQIVASEFKANLTSIIIKSLISSTLKTSLNMAVAKNDESGILSLATNIFSI
                     ATTRSDLRFWNFLPKNIQIMMIENDGSVQIYDDKNQKIYSSEVDIDKNVLIVVRSFAS
                     QFPARVYKIEN"
     gene            549..1172
                     /gene="lpoB"
                     /locus_tag="ACJFEZ_000897"
     CDS             549..1172
                     /gene="lpoB"
                     /locus_tag="ACJFEZ_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HGG0917027.1"
                     /translation="MKKNIFIIFSAFFAVFFAACGAPVYTDGYASQKKQGDALTLGLD
                     REDFEKTAQIMIDSMLSDPAFANIQPGQRKVIAIGKIINDTPQRIDTDKLISKITIAL
                     RKSGKFVLTTAVAAGGARDEMSEAVRELRDNDEFNQNTISSKGTLVAPDFSISGKIRQ
                     DNVKLKNGDIQAEYFFYLSVTDLNSGLAYWEDERTIDKTGSSKSVTW"
     gene            1172..2158
                     /locus_tag="ACJFEZ_000898"
     CDS             1172..2158
                     /locus_tag="ACJFEZ_000898"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917028.1"
                     /translation="MKKIFLFLTILSFMWAQDDVIIYDYVPLEDVNLSSLDPVQSLKT
                     LPHQRNKFQKVVQGNGTGESKEEALNNALIDALSQFKGVSNVNLRQELQSIDLSFSHL
                     GQISQKSKSVLQNVSKGYIDTYKVDKIDQNGTLWQVEISAFKSLYQNDNKPKLVILND
                     KNKEESYLKRALYDAFSQDENFTLLEREHDFKDENKIIKSEDGSSEESYKLGNVLGAD
                     YILEFEILDITQAKQSKISYQNNTKVSINIAYKLIFYPTRELVFSKTFNTTFTLSGDS
                     KKEQKNWENIALFMQREMEKSLFFDTLEEDNKQEGKENTYKLHENGGVNLGF"
     gene            2315..2623
                     /gene="rplU"
                     /locus_tag="ACJFEZ_000899"
     CDS             2315..2623
                     /gene="rplU"
                     /locus_tag="ACJFEZ_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HGG0917029.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            2634..2888
                     /gene="rpmA"
                     /locus_tag="ACJFEZ_000900"
     CDS             2634..2888
                     /gene="rpmA"
                     /locus_tag="ACJFEZ_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012109193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HGG0917030.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGIGKDHTIFALIDGFVKFERKDKDRKKVSVYPV"
     gene            2993..4048
                     /gene="obgE"
                     /locus_tag="ACJFEZ_000901"
     CDS             2993..4048
                     /gene="obgE"
                     /locus_tag="ACJFEZ_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HGG0917031.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     VLLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMREMPLKEQFIVLRKELEKFSNELFGREFG
                     IMISKSDSVNLGEDFAEQIAQNIANLEEYLKSIDNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKKLREKREKKVIK"
     gene            complement(4092..4595)
                     /locus_tag="ACJFEZ_000902"
     CDS             complement(4092..4595)
                     /locus_tag="ACJFEZ_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HGG0917032.1"
                     /translation="MANFRIQTYLFALIVALFFIACDSGENFKALNSNKIYNFSYNGF
                     EKSLKLDDQTQNFALVFFTKDCGVCKEQIPILQDLAKNYDFNIFIVLGDAKDAKDAKA
                     WADEKGLSHLALFYEKKAAKYLSGAVGEIYGVPVLSFFKEGKIDEKFIGLTPYGVLEN
                     EIKKLKI"
     gene            complement(4556..5044)
                     /locus_tag="ACJFEZ_000903"
     CDS             complement(4556..5044)
                     /locus_tag="ACJFEZ_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HGG0917033.1"
                     /translation="MKKVFLFFISLFLLNACSFDSNQDQGKIGQIGAEISAKDTLGKA
                     VKLADDKSNIKVLVFFQNGCPSCLQELPSLDKFIQEHPNKISVYAINSVDKVEVVQVL
                     AEQLNFKNIKVLTDDLKITNDRYAVFATPTTIILKDGIIKERILGEKPWQTFESKLIS
                     LL"
     gene            complement(5041..5688)
                     /locus_tag="ACJFEZ_000904"
     CDS             complement(5041..5688)
                     /locus_tag="ACJFEZ_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0917034.1"
                     /translation="MKELIQIKNLSKKFGKVKALDNINLNIYKGEWLAIMGPSGSGKS
                     TLLNILSLMDDPSSGKYILDNEDLEQINEEQKITLRREKIGLIFQQFHLIPYLSALEN
                     VMLSQYYHSSVDEEDAKAVLEKVGLSHRLSHLPSQLSGGEQQRVCIARALINNPEILL
                     ADEPTGNLDEANEKIVLETLQKLKNEGKTIVLITHNPELAKFADRTLILQHGILK"
     gene            complement(5688..6806)
                     /locus_tag="ACJFEZ_000905"
     CDS             complement(5688..6806)
                     /locus_tag="ACJFEZ_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HGG0917035.1"
                     /translation="MVDKFFLNELFKSIAFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVIIEPKNDKELILNQDYEEAKKNLKARALTPFLYTFLNLGSTS
                     GVVLGTDFRALKITKPFIEVKEGSFSLSDFDENSAFLGINLSKQLGLKVGNELQIYNP
                     ENGKTTKLTIKGILLSNDELDSIVLAPLSVVQNLSDTFGIQYANAVVYGNFDEINTKT
                     KNISNESINAKPISSVSLSEGLVLDKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFACEYFIISLFASIIGAFCGIFLANIFGYLIFNASIDFR
                     FKAIFMALIVSLFFAFLAAFFPIKKALKINVCENLKGE"
     gene            complement(6796..8094)
                     /locus_tag="ACJFEZ_000906"
     CDS             complement(6796..8094)
                     /locus_tag="ACJFEZ_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0917036.1"
                     /translation="MMLVKMITHSIFRNKIQKFLAFLTCFLATLLLCTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMLKDIYWRNNIT
                     AFAPFLEGKIEIKSNNSSKKILLYGTYFQKAIEIKDDDDFITGIKSLYPYLKVQGKWA
                     KDDSNEIMLGEDFAKNNDLKINDTIQLIGENKISKEVKIVGILLHANPKMSNKIITPL
                     NLAQELLEKKGLYASAEVRAFTIPESALSEKVRRMGEEKLDQIEYDKWYCSAYVGSIA
                     SQISDGLPGADAKALNAISDAQSLVVKKIQSLMAITCIICLIVASIAISSLMSSEIHR
                     RKKEIGLLKVLGANTFQIYLLFAGENLIIALVSAVFGFIFGIGLSELISLGIFGYFIN
                     IAFIALPLSLVFAGLIAILGCLLPIKNIANLSPAGVLYGR"
     gene            complement(8081..9484)
                     /locus_tag="ACJFEZ_000907"
     CDS             complement(8081..9484)
                     /locus_tag="ACJFEZ_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S-containing protein"
                     /protein_id="HGG0917037.1"
                     /translation="MSIYFVHFLSSILPLSILMAFITPDKRYIFKSFLALFLGFLFGY
                     FAFFIAAQFLKTENLIFNFNFIFIACLLLSFVFYFWQKIEILSFILLGNLSFCIALHY
                     YNLTQDFPIFNGVLIDSEAISSLGFIALALLICILIFFFLKWQKNINKKASFILFLIL
                     IFIEGDKVLANILLTLMRNSFIETHTFLVSFVGKSNYFGVFGIYVYLFFIIFLAFLSL
                     QIRKKNIVKKQILDIVYRKNEAKNTLINRYFSSVFISCILSFCIILYFFMISSKPLSI
                     DKPTELLPDKNGKFIFDVALLRDNKLHRFAYISEQGKVIRFFLINKREDRDSPVAVFD
                     ACAICGDMGYIKKEGELICISCNVRIFLPSVGKTGGCNPIPLKYDYDGEKITIDVKDV
                     VAGSNYFSQIKDIQVQDPVSKDKIINTQAPFSYSYKGITYYFSNEKNYEEFKKDPMKY
                     VEDTEALFLIQRRNNAS"
     gene            complement(9566..10105)
                     /locus_tag="ACJFEZ_000908"
     CDS             complement(9566..10105)
                     /locus_tag="ACJFEZ_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HGG0917038.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            complement(10102..>12166)
                     /locus_tag="ACJFEZ_000909"
     CDS             complement(10102..>12166)
                     /locus_tag="ACJFEZ_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HGG0917039.1"
                     /translation="FFKILFFFSMLFLANSVFARVDDYVAEANTIKNILEESIKSYEK
                     GDNLKAKKLSEDAYFQHFENMEGSIGRNIGKKAITMERKFTNLRRLYKDKAPIEQIDA
                     LIESLYYDLDEVAPILQNGYRLQAEASDTNYDKAAAEKSSIQANAKREAEAEALIAQM
                     MGIDKNDLAKTNSSSSTQNETINDSINNDLQAAAAMDARLQFVLDNISTKFSQAANAF
                     KNKDYQTSKDFLNDALFNDYRNTKVEVLINKFTKAGNDQKIQQAIRTLIRQINNANID
                     EKNLRNDLDSIEEQLFDIFLQIPNSELSNLKIEGFDDETKGKDYTKVSNDIKLALDEI
                     LKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSKSVALIKAST
                     DKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALIIIVAIVSYLV
                     QSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSRELIEGITMLVAVLLLFY
                     VGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAETVLFYQALLF
                     DAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYIIFYMVFVFTG
                     KGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFTVLIMLIIGILITKQISK
                     KGVKS"
BASE COUNT         4277 a         1901 c         1910 g         4078 t
ORIGIN      
        1 atgaatttaa tctaaccttg ccatttatct ttgatgatta tattacgact gctagtgttg
       61 ctttacctat tttaaaaaag cgtaatactt cttatgaaaa tttaaatatt gcaaacaatc
      121 atcagaaatt tacaacttct aatgcttttg attttgatca aattgttgcg agtgaattta
      181 aagccaattt gacttcaatc atcatcaaat ctttaatctc aagcacttta aaaacaagtt
      241 taaatatggc tgtggctaaa aatgatgaga gtggaatttt aagtcttgct acaaatattt
      301 ttagcattgc aaccacaaga agtgatttaa gattttggaa ttttttacct aaaaatatac
      361 aaattatgat gattgaaaat gatggatcgg tacaaattta tgatgataaa aatcaaaaaa
      421 tttattctag tgaagtggat attgataaaa atgtattgat tgtagtgcgt tcttttgctt
      481 ctcaatttcc cgctagggtt tacaaaattg aaaactaaaa gagtataatt acaaaaaaag
      541 gagaaataat gaaaaaaaat atttttataa tctttagcgc atttttcgca gtattttttg
      601 cagcttgtgg agcgcctgtt tatactgatg gttatgcaag tcaaaaaaaa caaggtgatg
      661 ctttaacctt aggacttgat agggaagatt ttgaaaaaac tgctcaaatt atgatagata
      721 gtatgttaag cgatcctgct tttgccaata ttcaaccagg tcaaagaaag gttattgcta
      781 taggtaaaat tatcaatgat actccccaac gcattgatac agataagctc attagtaaga
      841 tcactatagc gcttagaaaa tcaggtaaat ttgtcctaac aacagctgtt gcagcgggtg
      901 gagctaggga tgaaatgagt gaagcagtaa gagaattaag agataatgat gaatttaatc
      961 aaaacaccat ttctagcaaa ggaactttgg ttgcacctga tttttcaatc agcggaaaga
     1021 tccgccaaga caatgtcaag cttaagaatg gcgatataca agcagagtat ttcttttatc
     1081 taagcgttac ggatttaaat tcaggacttg cttattggga agatgaaaga acgattgata
     1141 aaacaggctc aagtaaatcg gtaacttggt aatgaaaaaa atctttttat ttttaaccat
     1201 cttgagtttt atgtgggcgc aagatgatgt tattatttat gattatgttc cgctagagga
     1261 tgttaattta agttctttag atcctgttca gagtcttaaa accttgccac accaaagaaa
     1321 taaatttcaa aaagtggtgc aaggtaatgg aacaggagaa agcaaggaag aagctttaaa
     1381 taatgcttta atagacgctt tatcacaatt taaaggagtt tctaatgtca atttaagaca
     1441 agagcttcaa agtattgatt taagcttctc tcatttagga caaatttcac aaaaatctaa
     1501 aagtgtcctt caaaatgtaa gtaagggtta tatcgatact tataaagtag ataaaattga
     1561 tcaaaacgga acgctttggc aagttgaaat ttcagctttt aaatctttgt atcaaaacga
     1621 taataaacct aaattagtaa ttttaaacga taaaaacaaa gaagaatcat atttaaaaag
     1681 agctttgtat gatgcttttt cacaggatga gaattttact cttttggaaa gagagcatga
     1741 ttttaaagat gaaaataaaa ttataaaaag cgaagatggt tctagcgaag aaagctataa
     1801 attaggcaat gttttgggtg ctgattatat tttagaattt gagattttag atattactca
     1861 agcaaaacaa agtaagataa gctatcaaaa taatacaaaa gtaagtataa atatagccta
     1921 taagcttata ttttatccta caagagagct tgttttttct aaaaccttca atacaacttt
     1981 tactttatct ggcgacagca aaaaagagca aaaaaattgg gaaaacattg cgttatttat
     2041 gcaaagagaa atggaaaaat cattattttt tgatacttta gaagaagata acaaacaaga
     2101 agggaaagaa aatacttata aacttcatga aaatggcggg gtcaatcttg gcttttaaat
     2161 tgctttaggg tttattttaa actctaaagt ctttcttaaa ttcatcaaat attaaagaaa
     2221 atttttgtaa aattaaaact tttctagcca ttaaagcttt taaatccgaa tttcggtgct
     2281 ttgtggtact taccaaatta ttaaggaaaa agcaatgtat gctattatta aacacagcgg
     2341 aaagcagtat aaagttagcg ttggcgatga gttaaagcta gatcactttg aagctgaaag
     2401 caaagcaagt attgaagtaa gtgaagttct tgctatcaat gataaagaat taaaggtagg
     2461 tgcgcctttc gtagcaggtg caaaagttgt tttggaagtg attaatcacg gaaaagataa
     2521 aaaagttgtg atttataaaa aaagacgcag aaaagattct aaacttaaac gcggttttag
     2581 aagacaattc actcgcgttg tagtaaaaga tattaaagct taaggagtaa agaatggcac
     2641 acaagaaagg tcagggttca actcaaaata accgcgattc tataggtcgt cgcttaggtg
     2701 ttaaaaaatt tggtggtgaa tttgttagag caggaaatat cattattcgc caaagaggaa
     2761 ctgcaactca tgcaggaaat aatgtaggca taggaaaaga tcacactatc tttgctttaa
     2821 ttgatggttt tgtgaaattt gaaagaaaag acaaagacag aaaaaaagtt tctgtatatc
     2881 ctgtataagt ttttagggcg tttttacgcc ttagaaactt taaatttata aatttaactt
     2941 ctataattta ttctaattta gctttataaa tttaaaatca aaggcaatta taatgtttat
     3001 tgatagtgtt aagattactt tagcttcggg cgatggtggc aaaggcgcgg tgagttttcg
     3061 tcgtgaaaag catgttcctc ttggcgggcc tgatggtggc gatggaggaa atggcgggga
     3121 tatcatcttc gtttgcgata ataatacaca tacacttgta aattttaaag gtaaaagaga
     3181 gcttcgcgcg caaaatggcg caggtggaat gggacgcaac aaaaatggaa aaaagggtga
     3241 aaatttagaa cttattgtcc ctgagggaac gcaagttatt gatgcgcaga ctaatgaagt
     3301 tttattagat cttacaaaag aggggcaaag agaacttttt ctaaaaggtg gcaaaggagg
     3361 gcttggaaat acgcatttta aacatgcaac caatcagcgc cctgattatg cacagccagg
     3421 cattaaaggc gaaagtcgtt tagtaagact tgagcttaag cttatcgccg atgtaggact
     3481 tgtaggcttt ccaaatgtgg gaaaatccac ccttataagt gtagtttcaa atgcaaagcc
     3541 tgaaatcgca aattatgaat ttaccacgct cacaccaaaa ctagggcttg tagatgtgga
     3601 tgagtataat tcttttgtga tggctgatat tccagggatt atcgaaggtg caagtggggg
     3661 caaaggctta gggcttgcat ttttaaaaca tatagaaagg actagctttt tactttttgt
     3721 actagatcct atgagagaaa tgcctttaaa agagcaattt atagtgttaa gaaaagagct
     3781 tgagaaattt tcaaatgagc tttttggacg tgagtttggc ataatgattt caaaaagtga
     3841 tagtgtgaat ttgggtgaag attttgccga gcagatcgcc caaaatatag cgaatttaga
     3901 agaatattta aaaagtattg ataatccaca aagcttttta atcaaagtat caagccttga
     3961 aaaaactgga cttaaagagc ttaaatttat gcttttagaa gagattaaaa aattaagaga
     4021 aaagcgtgaa aaaaaggtga taaaataatc acctcgagat attttaatta taatcttgat
     4081 ttatagcaaa attaaatttt taacttttta atctcatttt caagcacacc ataaggcgtt
     4141 aagcctatga atttttcatc tatcttgcct tctttaaaaa agctaagtac aggtactccg
     4201 tatatttctc caactgcacc tgagagatat ttggctgctt ttttttcata aaataaagcc
     4261 agatgcgaca aacccttttc atctgcccaa gctttagcat cctttgcatc tttagcatcg
     4321 cctagtacta taaaaatatt aaaatcataa tttttagcta aatcttgcaa aataggaatt
     4381 tgctctttac aaaccccaca atctttagta aaaaatacta atgcaaaatt ttgtgtttga
     4441 tcgtctaatt ttaaactttt ttcaaaacca ttataagaga aattataaat tttattgcta
     4501 tttaaagctt taaaattttc tccactatcg caagctataa aaaataaagc tacaattaaa
     4561 gcaaagagat aagtttggat tcgaaagttt gccatggttt ttctcctaaa attctttctt
     4621 ttataatccc atctttaagt atgatggtgg ttggagttgc aaatacagcg tagcgatcat
     4681 tggtgatttt aagatcatcg gttaaaactt tgatattttt aaaatttaat tgttcggcca
     4741 aaacctgaac gacttcaact ttatctaccg aatttatagc ataaacactg attttatttg
     4801 ggtgttcttg tataaattta tccaaagaag gcagctcttg caaacaagaa ggacatccat
     4861 tttgaaagaa aactaagact tttatattgc ttttatcatc agctaattta acagcctttc
     4921 ctaaagtatc tttggctgaa atttcagctc ctatttggcc aattttacct tggtcttgat
     4981 ttgagtcaaa agagcaggca ttgagcaaaa aaagacttat gaaaaataaa aatacttttt
     5041 tcattttaaa attccatgtt gcaagataag ggtgcgatct gcaaattttg ctaattcggg
     5101 attgtgtgtg atcaagacta tggttttacc ctcatttttt aatttttgca aggtttcaag
     5161 aacgattttt tcattggctt catccaaatt ccctgtaggc tcgtcagcaa gtaaaatttc
     5221 aggattgtta atcaatgctc ttgctataca aactctttgt tgctctccac cgcttagttg
     5281 gcttggtaaa tggctaaggc gatgtgaaag ccctactttt tcaagtacag cttttgcatc
     5341 ctcttcatct acgctagaat gatagtattg cgaaagcata acattttcta aggcactaag
     5401 ataaggaatg agatgaaatt gctgaaaaat aagcccgatt ttttctcggc gcaaagtgat
     5461 tttttgctct tcatttattt gttctaaatc ttcattatct aaaatgtatt taccactgct
     5521 tggatcatcc ataagagata atatatttaa aagcgttgat tttccacttc cagaaggacc
     5581 catgatggca agccattctc ctttgtaaat atttaaattt atattatcca gtgcttttac
     5641 tttaccaaat tttttgctta aatttttaat ttgtataagt tctttcatta ttcacctttc
     5701 aaattttcac agacattgat ttttaatgct ttttttatag gaaaaaaggc agctaaaaaa
     5761 gcaaaaaaca aagaaacaat taaagccata aatatagcct taaatctaaa atctatactt
     5821 gcattaaaaa tcaaatatcc aaatatattt gctaaaaata tcccacaaaa agctcctata
     5881 atgctagcaa aaagactaat gataaaatat tcacaagcaa aaagcttgaa aatttcactt
     5941 tttttagcac ccaaggctaa acgcaaggca atttcttttt tacgcgaaaa tataatcgag
     6001 cttagagtgg tgtttacact tgttgtgact atgattaaga caacaagtat gattaaaaac
     6061 attaaagctt ttattttgtc taaaactagg ccttcgctta aagatactga tgaaataggt
     6121 tttgcattaa tgctttcatt gctaatattt tttgtttttg tatttatctc atcaaaattc
     6181 ccataaacaa ccgcattagc atactgaatt ccaaaggtat cgcttaaatt ttgtactacg
     6241 cttaaaggcg ctaaaactat gctgtctaat tcatcattac ttaagagtat gccttttatc
     6301 gtaagcttgg tagttttgcc attttctggg ttgtaaattt gaagttcatt gcctacttta
     6361 agtcctagtt gtttggataa attaataccc aaaaaagctg aattttcatc aaaatcactt
     6421 agagaaaagc tcccttcttt aacttctata aaaggcttag ttatctttaa ggctctaaaa
     6481 tctgtaccca aaactactcc actagtgcta cccaaattta aaaatgtata caaaaaagga
     6541 gttaaggctc tagcttttaa attctttttt gcttcttcat agtcttgatt taagataagt
     6601 tctttatcat ttttaggctc gatgataaca tttgctccat aagcttttaa ttctttagaa
     6661 agctttgtat caatatcaaa ataaatattt aaaaaagccg agcaagttag tgctcctata
     6721 aaaacactta agacaataat aaaaagtctt tgataagaaa aagcaatgct tttaaaaagc
     6781 tcatttaaaa aaaacttatc taccataaag aactcctgcg ggagaaagat ttgcaatatt
     6841 ttttatagga agcaagcatc caagtatagc tatcaaacct gcaaatacaa gacttaaagg
     6901 caaggctata aaagcaatgt ttataaaata tccaaaaatt ccaaggctga taagctctga
     6961 aagtcctatg ccaaaaataa atccaaatac agcagaaact aaagctatga tcaaattttc
     7021 acctgcaaaa agtaagtaaa tttgaaatgt atttgccccc agtactttta aaagccctat
     7081 ttcttttttt ctgcggtgaa tttcagaact cattaaactt gatatagcaa tacttgcaac
     7141 aataagacaa ataatacaag taatagccat caaagactga atttttttaa caaccaaact
     7201 ttgtgcatcg cttatggcat tgagtgcttt tgcatccgct cctggcaagc catcgctaat
     7261 ttgactagca attgatccta cataagctga gcaataccat ttatcgtatt ctatttgatc
     7321 gagtttttcc tcgcccattc ggcgtacctt ttcagaaagg gctgattcag gtatggtaaa
     7381 agctcttact tcagcacttg catataagcc ttttttttct aataattctt gagctaaatt
     7441 taaaggagtg atgattttgt ttgacatttt aggattggcg tggagtaaaa ttcctacaat
     7501 ttttacttct tttgaaattt tattctctcc tatgagttgt atcgtgtcat tgattttaag
     7561 atcgttattt ttggcaaaat cttcgcctag catgatttca ttgctgtcat ctttagccca
     7621 tttgccttgc actttcaaat aaggataaag acttttaata cctgtgataa aatcatcatc
     7681 atcttttatt tcaatcgctt tttgaaaata agtaccataa aggagtattt tttttgagga
     7741 attattgctt tttatttcta tctttccttc taaaaaagga gcaaaggctg tgatattgtt
     7801 tcgccaataa atatctttta gcatatataa atttttttct tctaaatagt ttttattttt
     7861 taaaggttcg taaagctcat tgcctatttc tatgctaagg cttgagcctt taggcaaaac
     7921 cagtatatta gatccataac ttttaagttg cttagttact tcatcgccta tacttagagt
     7981 gatatttaac attgtacata gcaaaagcgt agccaaaaaa caagtaagaa aagctagaaa
     8041 tttttgaatt ttatttctaa agatagaatg agttatcatt ttaactagca ttatttctcc
     8101 tttggattaa aaataaagct tctgtatctt ctacatattt cataggatct ttcttaaatt
     8161 cctcatagtt tttttcattt gaaaaataat aagttatacc tttatagctg taagaaaaag
     8221 gtgcttgagt gttaatgatc ttatcttttg aaacaggatc ttgcacttgt atatctttaa
     8281 tttgactaaa ataattagat cctgctacaa catctttaac atctatggtg attttttcac
     8341 catcataatc gtattttaat gggataggat tgcaaccccc tgtttttcct acactcggta
     8401 gaaaaattcg cacattgcac gaaatgcaaa ttaattcccc ttctttttta atataaccca
     8461 tatccccaca aatagcacaa gcatcaaaaa cagccacagg agaatcccta tcttctcttt
     8521 tattgatgag gaaaaacctt atcactttgc cttgctcgct tatataagca aaacgatgaa
     8581 gtttgttatc tcttaaaagc gctacatcaa agataaattt gccattttta tcaggtaaaa
     8641 gttctgtagg cttgtctatg cttaagggtt tagaacttat cataaaaaag tataagatga
     8701 tacaaaaact caaaatacaa gagataaaaa cactagaaaa atagcgattt atgagagtat
     8761 tttttgcttc atttttgcgg taaacaatat ctaaaatttg cttttttaca atattttttt
     8821 tgcgaatttg caaacttaaa aatgctaaaa aaatgatgaa aaataaataa acataaattc
     8881 caaaaacacc aaaataatta ctttttccaa caaaacttac taaaaaagta tgagtttcta
     8941 tgaaagaatt tcgcatcagt gtaagcaata tatttgctaa aaccttatct ccttctataa
     9001 aaataaggat taaaaaaagt ataaaacttg cttttttgtt gatattcttt tgccacttta
     9061 aaaagaagaa aattaaaata caaattaata aagctaaagc aataaaacct aaagaagaaa
     9121 tggcttcgct atcgattaaa acaccattaa atataggaaa atcttgagtt aaattataat
     9181 aatgcaaagc tatgcaaaaa ctcaaatttc ctagtaaaat aaaacttaaa atttctattt
     9241 tttgccaaaa ataaaacaca aaactcaaaa gcaaacaggc tataaaaata aaattgaaat
     9301 taaatatcaa attctcagtt tttagaaatt gtgctgcaat aaaaaaagca aaatatccaa
     9361 ataaaaagcc taaaaaaaga gctaaaaagc ttttaaaaat atatctttta tcgggcgtaa
     9421 taaaagccat taaaatactt aagggcaaga tactagaaag aaaatgcaca aaatatatac
     9481 tcataattta ctctttaaac attgttattt tgattttaaa ataaaaataa aaatatttaa
     9541 acactcggaa aatccgagtg taaaatcatt ttggcgtgcc tgtgtatttg aatttataat
     9601 ctactttaaa aggttcaaac cacttaccca cacctgtttc ttcatcaaca tggcgtccaa
     9661 aaccttgttt ttctggattt gagatataaa aagtaagttc ataatttcct acgccaaagc
     9721 cacctttttt atctttttcc atagcaatat ttgcaccata gtgaggacca tcatcagcca
     9781 ccataggcat caaagttcca cgtttaattg cacctgtgtc ggtattttta agttcataag
     9841 ctatagttaa ataaggcatc caaaaacctt ctggaaaacc atttggattg tttttaagtg
     9901 cgtgaatgtc agcttctagg tgaatatctg ctaaagatgc agctaaatca atacctcttg
     9961 gctccatttc aataggttgt aaataaacag cggctatttc catgccatta agttcttttg
    10021 gatcgccaat tggcacttcg cctgcaaata aatttgtact aataaccgca gctgcagcaa
    10081 ctactgataa aacttttttt atcatgattt tactcctttt tttgaaattt gttttgttat
    10141 taaaatgcca ataattagca taattaaaac tgtaaattga gggattaaag tctcatagta
    10201 aggataaatt ccaagccata aaatcggttc aaaattcata ggtataagac taggaatgat
    10261 gacttttcct tctatgagtt cggctatgcc tttgcctgta aaaacaaaaa ccatgtaaaa
    10321 aataatgtaa gaagtgatat agaaaaattg ttttacaggt atgcgaatgg ctcctgcttt
    10381 taaaagaaaa tataaaacaa taagtattaa aattccaagt ccaagtccgc caaaaacagc
    10441 accaaaatca gtgcttgttt tagcatcaaa aagcaaggct tgataaaaaa gcacagtttc
    10501 tgcaccttct ctataaacag ctaaaaatac ggtaatccaa agggtttttg cgctattatt
    10561 tgatatagca tctatagcac cttgtttgat aaagcttgtc cattttttat tttgtgcgtt
    10621 tgaaagtagc caaaagccca cataaaagag tagtaatacg gctacaagca tggtaatacc
    10681 ttctataagc tctctacttt gacctgcatt ttctttaaat agccaagaaa ctccaaaagc
    10741 ggtaataaaa cttaaaatca ctcctgtaaa aagagcacta taggcgatat ttagacgatt
    10801 tttgttgcca ctttgcacaa gataagaaac aatggctaca atgataatca aagcttccaa
    10861 gccttcacgc aaaataatac ctaaagccca tataaacagc gaataaggag tagaatcttg
    10921 aattttatcc acgctgctgg ctatgagttg ttctaagtca ttaaaagtag cttcaagctc
    10981 ttttttatct gtacttgctt tgataagagc tacgcttttg gaaaataaac tttcgatttt
    11041 aagttttaag ccactatcta cagcaccgat tttattttcc ataccgcttg cttcaaaaat
    11101 atctagataa attccttgta aatcatctac tatagaagca ctaaagccat cataattttt
    11161 taaaatttca tctaaagcaa gtttgatatc attagaaacc ttggtgtaat ctttaccctt
    11221 tgtttcatca tcaaaccctt cgattttcaa atttgaaagc tccgaatttg gaatttgcaa
    11281 aaagatatca aaaagctgtt cttctatcga atctaaatca tttcttaggt ttttttcatc
    11341 aatatttgcg ttgttgattt ggcgtatgag agttcgtatg gcttgttgga ttttttgatc
    11401 attacctgct ttggtgaatt tgttgatcaa aacttcaact ttggtattgc gataatcatt
    11461 aaataaagca tcatttaaaa aatctttact tgtttgataa tctttatttt taaaagcatt
    11521 ggctgcttga gagaatttag tagatatatt atctaataca aattgcaatc ttgcatccat
    11581 agccgcagcc gcttgtaaat cattatttat actatcattt atagtttcgt tttgggtact
    11641 agaagaagaa ttagtttttg ctaaatcatt tttatcaata cccatcattt gggcaatcaa
    11701 agcttctgct tctgcttcac gcttggcatt ggcttgtatg cttgattttt cagctgctgc
    11761 tttatcgtaa tttgtatcac ttgcttctgc ttgtaagcga taaccatttt gcaaaatcgg
    11821 tgcaacttca tctaaatcat aataaagact ttcaattaaa gcatcaattt gctctatggg
    11881 cgctttatct ttatacaagc gacgcaaatt tgtaaatttt ctttccatgg tgatggcttt
    11941 tttgcctata tttcttccaa tggaaccttc catattttca aagtgttgaa aataagcatc
    12001 ttcgctaagt tttttagcct ttaaattatc gcccttttca tagcttttta tactctcttc
    12061 taatatattt ttaatagtat tagcttctgc tacataatca tcaactctag caaaaacaga
    12121 atttgctaga aagagcatag agaaaaaaaa caaaatttta aaaaat
//
LOCUS       DBBXRO010000045        11615 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.045, whole genome shotgun sequence.
ACCESSION   DBBXRO010000045 DBBXRO010000000
VERSION     DBBXRO010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11615
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.045"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1009
                     /locus_tag="ACJFEZ_000910"
     CDS             <1..1009
                     /locus_tag="ACJFEZ_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HGG0917040.1"
                     /translation="DGVLNLFKTQSEIFAKANITNESVSAMPRIYLEGVGFCVLVFIV
                     VFLVFKNQSDISGILATISIFVLALYRLMPSANRIITSYHDLLYYRSSLDIIYQILKQ
                     KEESLGEEKIDFDKELRLENLSFGYKDKKNLFTCLNLSIKKGEKIAFIGESGCGKSTL
                     VDIIIGLLSPREGRVLVDKNELNMKNVKNYRQKIGYIPQNIYLFNDSIAKNISFGDEV
                     DEEKLQRVIKQANLEHFVKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLDPEILV
                     LDEATSALDTESEARIMDEIYKISKDKTMIIIAHRLSTITRCDSIYRLEHGKLFKEDK
                     K"
     gene            1006..2082
                     /locus_tag="ACJFEZ_000911"
     CDS             1006..2082
                     /locus_tag="ACJFEZ_000911"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004291478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0917041.1"
                     /translation="MKITFIIATLNSGGAERVLATLANALCTQHEVSIIKFHVGDSFY
                     KLEENIKLITLEQFRFDTLYHKIASRFKKYLALRKALKENESDVFISFLDTTNIACIF
                     AKIGLKTPLIISEHSNEAYLKSKIWRFLRRLSYPFCDALTVLGSSDKIYYEKFVKRVK
                     LLPNPCHFSTEISLNEHFEKENLVLFIGRLDQNKNPQMFLKAIVHLDKKLQEDYEFVV
                     AGDGELRQELEYKAKSLGIRVKFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESLY
                     FEVCRISTSYYNGAKDLINDNKDGFLVGCDDEIALARKLELVLKDEQLRKNIVINAKK
                     RCEDFEISHIKKQWLELIDEVKNA"
     gene            2075..3004
                     /locus_tag="ACJFEZ_000912"
     CDS             2075..3004
                     /locus_tag="ACJFEZ_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0917042.1"
                     /translation="MPKLSVIVPTFNRSSLLQKAVQSILNQDFKDLEIIISDDNSSDD
                     TKSVVENLQKSDKRIKYFLNQNYKQGPNGNKNNGLDKASGEFITFLDDDDELLPYALG
                     VLMQKVDEGYSHVFGNCLIEKEGILSDEFSGRGLQKEDEISKKDFLMQRFSGEFFSVF
                     KASLLKNKRFNEEFYGNEATLWVNLYEEKSFYIHKAFRIYRVFRKDSVTLGASKNAHR
                     VHLGYLELAKILENELKASGDDDYRKTCASYYKMAAYYAKLSANYKALYHCLFKSLSI
                     KINAPALILLTLSIIPSKMIEKLSKIRVALCKN"
     gene            2992..4089
                     /locus_tag="ACJFEZ_000913"
     CDS             2992..4089
                     /locus_tag="ACJFEZ_000913"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0917043.1"
                     /translation="MQKLAIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EISECKIHFLERSKPSENPILKFLKLPFLALKYKKLCQKLNIDIEFVFLNRPNYIALM
                     AKIFGNKTRLVINECTTPSVMYAKNNFNSLANKLLITLLYPRADLILPNSKGNLEDLL
                     CNFKIDKAKCEILYNAIDLEKIEQKALEDISLKDKFILSVGRLDEGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKDLNLEDKVLLLGFDNNPYKYMSKCEFFAFASVFE
                     GFSNVLIESLACGCAVVCTDHRSGARELFGDDEFGLLVEVNNENSMFMGLKTMLEDEN
                     LRKAYKKKAKDRALDFDKAKIARNALKYLLG"
     gene            4093..6237
                     /locus_tag="ACJFEZ_000914"
     CDS             4093..6237
                     /locus_tag="ACJFEZ_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004576 - oligosaccharyl transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STT3 domain-containing protein"
                     /protein_id="HGG0917044.1"
                     /translation="MLKKEYFKNPTFILLAFIILAYVFSVLCRFYWIFWASEFNEYFF
                     NNELMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWFYKITPFSLESIFI
                     YISTFLSSLVVIPLILIANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     AMMIVFFMIRLILKKDLLSLITLPLFVGIYLWWYPSSYTLNVALLGLFFIYTLVFHIK
                     EKTLYMAIILASITLSNIAWFYQSAIIVILFSLFVLQNKRFSFALLGILGLATLVFLI
                     LSGGIDPILYQLKFYIFRSDESANLAQGFMYFNVNQTIQEVESIDLSIFMQRISGSEL
                     VFFVSLIGFIFLVRKHKSMILALPMLALGFLALKSGLRFTIYAVPVLALGFGFLMSLL
                     QERKQKNNNTYWWANIGVFIFTFLSLIPMFYHINNYKAPTVFSQNEATKLDELKKIAQ
                     REDYVVTWWDYGYPIRYYSDVKTLADGGKHLGKDNFFPSFVLSKDQVAAANMARLSVE
                     YTEKSFYAPLNDILKNDLLQAMMKDYNQNNVDLFLASLSKPDFKINMPKTRDVYIYMP
                     ARMSLIFSTVASFSFVDLETGEINKPFTFSAAYPLDVKNGEIYLSNGIALSDDFRSFK
                     INNSTISVNSIIEINSIKQGEYKITPIDDMAQFYIFYLKDSTIPYAQFILMDKTMFNS
                     AYVQMFFLGNYDKNLYDLVINARDAKVFKLKI"
     gene            6249..7379
                     /gene="pglA"
                     /locus_tag="ACJFEZ_000915"
     CDS             6249..7379
                     /gene="pglA"
                     /locus_tag="ACJFEZ_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HGG0917045.1"
                     /translation="MRVGFLTHAGASIYHFRLPIIKALIARGDEVFVIVPQDEYTEKL
                     KALNLNIVVYELSRASLNPLIVFKNFLHLKNVLKNLNLDLLQSGAHKSNTFGLIAAKY
                     AKIPYKIGLVEGLGSFYIDKGFKANLVRFVINTLYKLSFKIADSFIFVNQANADFMRN
                     LGLKENKICVIKSVGINLKKFFPMRVEQEAKKAFWQNLKIDEKPIVLMIARALWHKGV
                     KEFYESAEYLKDRANFVLVGGRDDNPSCASLEFLNSGKVFYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKVIVVSDCEGCVEAISNAYDGLWAKTKDSKDLIEKIQV
                     LLEDESLRINLGKNAAKDALQYDENVIAQRYLELYDRVIKNV"
     gene            7372..7974
                     /gene="pglC"
                     /locus_tag="ACJFEZ_000916"
     CDS             7372..7974
                     /gene="pglC"
                     /locus_tag="ACJFEZ_000916"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HGG0917046.1"
                     /translation="MYEKWIKRIFDFVLALFLLVLFSPLILITALLLKITQGSVIFTQ
                     NRPGLNEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNEEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            7961..8548
                     /gene="pglD"
                     /locus_tag="ACJFEZ_000917"
     CDS             7961..8548
                     /gene="pglD"
                     /locus_tag="ACJFEZ_000917"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HGG0917047.1"
                     /translation="MARTEKIYIYGASGHGLVCADVATNLGYKECIFLDDFKGKKFES
                     SLPKYDIFIAIGNNEIRKKLFNQISDSGFKIVNLIHKSAIISQSADIAEDAGILIMPY
                     VVVNAKAKIKKGVILNTSSVIEHECEVGEFSHISVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKSQSEKGVFVGVPAKRM"
     gene            8703..9863
                     /gene="pglE"
                     /locus_tag="ACJFEZ_000918"
     CDS             8703..9863
                     /gene="pglE"
                     /locus_tag="ACJFEZ_000918"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HGG0917048.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEESVKDY
                     AQCENALALNSATAALHLALRVAGVEQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETFNIDIDLLKLAIKESEKKPKALILTHLYGNAAKMDEIVQICEKENIILIEDAAEAL
                     GSFYKGRALGTFGEFGAYSYNGNKIITTSGGGMLIGKDKQKIERARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGDSFVFLDELENS
                     RSNRWLSTALIDFDKNEMNAYQKCIEISQKDLILHPKISKLITDLQKEQIETRPLWKA
                     MHTQEVFKGAKAYVNGNSELFFKKGICLPSGTAMSKDNVREISELIIKSVKA"
     gene            9866..>11615
                     /gene="pglF"
                     /locus_tag="ACJFEZ_000919"
     CDS             9866..>11615
                     /gene="pglF"
                     /locus_tag="ACJFEZ_000919"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HGG0917049.1"
                     /translation="MDFYKSKRLIFFLCFDAFLFILSIFLAFSLRFSGEIPSIFYEGM
                     IKAGLILLVLKIAFLFIFRIYKVAWRFFSLSEARKIFFALVLAEICFLLIFYFYDDFF
                     NPFPRSVIGIDLILSYMFVGTLRISKRMLIDFKPSRAKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARRELIGTYCDKFIVEDKSKIKDYVNEGVKTAIIALKLDQAE
                     LKALFEELIAYGISDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVASFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMLDHSEFNLYKINEDLSLYKEKITPVLLSILDEQ
                     SLDEIIKEYKPELILHAAAYKHVPLCEQNPHSAVLNNIVGTKTLCDVAKKNKVKKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLNSSDENFEVSCVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVSEAVQLVLQAGAIAKGGELFVLDMGEPVKIMDLAKKMLI
                     LSNREDLEIKITGLRRGEKLFEELLIDENDAKTEYESIFVAKNEKMDIQILNDYIKKL
                     QDCQNIAEILKEIVPEF"
BASE COUNT         3889 a         1385 c         2284 g         4057 t
ORIGIN      
        1 agatggcgtt ttaaatcttt ttaaaactca aagcgagatt tttgctaagg caaatatcac
       61 caatgaaagc gtaagtgcca tgccaagaat ttatcttgaa ggggttggct tttgtgtact
      121 tgtttttata gtggtttttt tagtatttaa aaatcaaagc gatatatccg gaattttagc
      181 gactatttcc atttttgttt tagcgcttta tcgcttgatg ccaagtgcaa atcgtatcat
      241 tacaagctat catgatttac tttattatcg ctcttcttta gatattattt atcaaatttt
      301 aaagcaaaaa gaagagagtt tgggtgaaga aaaaattgat tttgataaag aattaagact
      361 agaaaattta agttttggat ataaagacaa aaagaattta tttacttgtt taaatttaag
      421 tataaaaaaa ggcgaaaaga tcgcatttat aggagaaagt ggttgtggaa aaagcacttt
      481 agtggatata atcataggac ttttaagtcc tagagagggt agggtgcttg tagataaaaa
      541 tgaattaaat atgaaaaatg ttaagaatta tcgccaaaaa ataggttata tcccgcaaaa
      601 tatctatctt tttaatgaca gcattgctaa aaatatcagc tttggagatg aagtagatga
      661 agaaaaactt caaagggtga ttaagcaagc taatttagaa cattttgtga aaaatttacc
      721 ccaaggagtg caaacaaaag taggcgatgg tgggagtaat ttaagcggtg gacaaaagca
      781 acgcatagcc atcgcaagag ctttgtacct agatcctgaa attctagttc ttgatgaggc
      841 tacttctgcg cttgatactg aaagcgaagc aaggattatg gatgaaattt ataagatttc
      901 taaagacaaa accatgatta ttattgcgca ccgtctttca accatcacgc gttgtgatag
      961 catctatcgt ttagaacatg gcaaactttt taaggaggat aaaaagtgaa aataactttt
     1021 atcatagcca ctttaaattc aggaggtgct gagcgtgttt tagcgacttt agcaaatgcg
     1081 ctttgcactc agcatgaagt aagtatcatc aaatttcatg tgggcgattc tttttataaa
     1141 cttgaagaaa atatcaaact tataacttta gagcaattta gatttgacac tttatatcat
     1201 aaaatcgcaa gccgttttaa aaaatatctg gcattaagaa aagctttaaa agaaaatgaa
     1261 agcgatgttt ttatctcttt tttagatacg acaaatattg cttgtatttt tgctaagata
     1321 ggattaaaaa ccccattaat cataagcgaa catagtaatg aagcttattt aaaatctaaa
     1381 atttggcgtt ttttaagacg cttgagttat cctttttgcg atgctttgac cgtgcttgga
     1441 agtagtgata aaatttatta tgaaaaattt gtaaaaaggg taaaactttt gcctaatcct
     1501 tgtcatttta gcacagaaat ttctttaaat gagcattttg aaaaagaaaa tttggtgctt
     1561 tttataggtc gtttagatca aaataaaaac cctcaaatgt ttttaaaagc catagtgcat
     1621 ttagataaaa aattgcaaga ggattatgaa tttgttgtgg ctggtgatgg ggaattaaga
     1681 caagagcttg aatataaggc aaaatcttta ggcataagag tgaagttttt agggcgtgtt
     1741 gaaaatgtaa aagcgctcta tgaaaaggct aaagtacttt gtctttgttc ttttgttgag
     1801 ggtttgccaa cggttttgat cgagagtttg tattttgaag tgtgtagaat ttcaacttct
     1861 tattataatg gagctaagga cttaattaac gataataagg atggattttt agtgggttgt
     1921 gatgatgaaa tagctttggc tagaaagctt gagcttgtat taaaagatga gcaactaaga
     1981 aaaaatatcg ttataaatgc taaaaaaaga tgtgaagatt ttgaaatttc tcatattaaa
     2041 aagcaatggc ttgagcttat tgatgaggtt aaaaatgcct aaactttctg ttatagttcc
     2101 tacttttaat cgttcttcat tacttcaaaa ggcagttcag agtatcttaa atcaagactt
     2161 taaagactta gaaatcatta taagcgatga taattctagt gatgatacta aaagcgttgt
     2221 agagaatttg caaaaaagtg ataaacgcat taagtatttt ttaaatcaaa actacaaaca
     2281 aggccctaat ggcaataaaa acaatggctt ggataaagca agtggtgaat ttataacctt
     2341 tttagatgat gatgatgagc ttttacccta tgctttgggt gttttaatgc aaaaagtaga
     2401 tgagggttat tctcatgttt ttggaaattg ccttatagaa aaagaaggaa ttttaagtga
     2461 tgagtttagc ggtagaggtt tgcaaaaaga ggatgaaatt tctaagaaag attttttaat
     2521 gcagcgtttt agtggggaat ttttttctgt ttttaaggct tctttgctta aaaataagcg
     2581 ttttaacgag gaattttatg gcaacgaagc cacgctttgg gtgaatttat acgaagaaaa
     2641 aagtttttat atccataaag cttttagaat ttatcgtgtt tttagaaaag atagtgtcac
     2701 gctaggagcg agtaaaaatg ctcatagggt gcatttgggg tatttagagc ttgcgaaaat
     2761 tttagaaaat gagttaaaag cttctgggga tgatgattat agaaaaactt gtgcgagtta
     2821 ttataaaatg gcagcgtatt atgcaaaatt aagtgcaaat tataaagcac tttatcattg
     2881 tttgtttaaa agtttgagca ttaaaatcaa tgctcctgct ttgatattac ttactttaag
     2941 tataattcca agtaaaatga ttgaaaaact atcaaaaatt cgggtggctt tatgcaaaaa
     3001 ttagcgattt ttatttattc tttaggaagt gggggtgctg aaagagtagt ggcaacttta
     3061 cttccgattt taagtttgaa atttgaagtg catttgattt taatgaatga taaaatttct
     3121 tatgaaattt ctgaatgcaa aatccatttt ttagagcgtt caaaacctag tgaaaatcct
     3181 attttaaaat ttttaaaact tcctttttta gctttaaaat ataaaaaact ttgccaaaaa
     3241 ttaaatatcg atatagaatt tgttttttta aataggccta attatattgc attgatggca
     3301 aaaatatttg gcaacaaaac tcgccttgta atcaacgaat gtaccactcc aagcgtgatg
     3361 tatgctaaaa acaatttcaa ttctttagcc aataaacttt tgattacttt gctttaccca
     3421 agggctgatt tgattttgcc taattctaag ggaaatttag aagatttatt gtgtaatttt
     3481 aaaattgaca aagcaaaatg tgaaatttta tacaatgcta tagatttgga aaaaatagaa
     3541 caaaaagcac ttgaagatat aagcttaaag gataaattta ttttaagcgt gggaaggctt
     3601 gatgagggta aaaatcatgc cttgcttatc cgtgcttatg cgagattaaa aacagattta
     3661 aagcttgtga ttttaggcga gggagtgcta aaagatgagc ttttggcttt gattaaagac
     3721 ttgaatttag aagataaagt tttgcttttg ggctttgata ataatcctta caaatatatg
     3781 tctaagtgtg aattttttgc ttttgcttct gtgtttgagg gtttttcaaa tgttttaatc
     3841 gaaagtttag cttgtggctg tgcggtggtt tgcactgatc atagaagtgg tgcaagagag
     3901 ctttttggag atgatgaatt tggactttta gtagaagtaa ataatgaaaa ttctatgttt
     3961 atgggcttaa aaacaatgct cgaggatgaa aatttaagaa aagcttataa gaaaaaggcc
     4021 aaggataggg ctcttgattt tgataaagca aaaatcgcac gcaatgcttt aaaatattta
     4081 ttaggataag atatgttaaa aaaagaatac tttaaaaacc caacttttat tttattggct
     4141 tttataattt tagcgtatgt ctttagtgtt ttatgtaggt tttattggat tttttgggca
     4201 agtgagttta atgaatattt tttcaataac gagcttatga ttatctcaaa tgatggatat
     4261 gcttttgcag agggtgcaag agatatgata gcgggttttc atcaacctaa tgatttgagt
     4321 tattatggtt cttcgctttc aacgctcaca tattggtttt ataaaataac tcctttttct
     4381 ttagaaagca tttttatata tatcagtact tttttatctt ctttggtggt tatacctttg
     4441 attttgattg ctaatgaata caaacgccct ttaatggggt ttgttgcagc attgctagcc
     4501 agtatagcta atagctatta taaccgcacg atgagcggat attatgatac tgatatgctt
     4561 gttatagttc ttgcaatgat gatagttttc tttatgataa ggctgatttt gaaaaaagat
     4621 ttattatctt taataacact gcctttgttt gtaggaattt atctttggtg gtatccatca
     4681 agctatactt taaatgttgc tttactagga cttttcttta tttatacctt ggtttttcat
     4741 ataaaagaaa aaacgcttta tatggctatt atcctagctt ctatcacact ttcaaatata
     4801 gcttggtttt atcaaagcgc catcattgtc atacttttta gtctttttgt tttgcaaaat
     4861 aagcgtttta gctttgcttt gcttggaatt ttaggtttgg caactttggt atttttgata
     4921 ctaagcggtg gaattgatcc tatactctat caacttaaat tttatatttt tagaagtgat
     4981 gagagtgcaa atttggctca aggttttatg tattttaatg taaatcaaac catacaagag
     5041 gtagaaagta tagatttaag tatttttatg caaaggatta gcggaagcga gcttgtattt
     5101 tttgtatctt taatcggctt tattttcctt gttagaaaac ataaaagtat gattttggct
     5161 ttgccgatgt tagctttagg atttttagca cttaagagtg gacttcgttt tactatttat
     5221 gcagtacctg ttttagcact tggatttggt tttttaatga gtcttttgca agaaagaaaa
     5281 caaaaaaaca ataataccta ttggtgggcc aatataggcg tttttatttt tactttttta
     5341 agtttaattc ctatgttcta tcatatcaac aattataaag caccaactgt tttttctcaa
     5401 aatgaggcta cgaaattaga tgagcttaaa aaaattgcac aaagagaaga ttatgtagta
     5461 acttggtggg attatggata tcctattagg tattacagcg atgttaaaac tttggctgat
     5521 gggggtaagc atttaggcaa ggataatttt ttcccatctt ttgttctaag taaagatcaa
     5581 gtggctgctg caaatatggc aagacttagt gtagaataca cagaaaaaag tttttacgcc
     5641 cctttaaatg atattttaaa aaatgatctt ttacaagcca tgatgaaaga ttataatcaa
     5701 aataatgtgg atttgttttt agcttcgctt tccaagcctg attttaaaat caatatgcca
     5761 aaaacacgcg atgtgtatat ctatatgcca gctagaatgt ctttgatttt ttcaactgtg
     5821 gctagttttt cttttgtgga tttggagaca ggtgagataa ataaaccttt tacttttagt
     5881 gcagcttatc cacttgatgt taaaaatgga gaaatttatc ttagcaatgg tattgcatta
     5941 agcgatgatt ttagaagttt taaaataaat aatagtacta tatccgtaaa tagtatcata
     6001 gagattaatt ctatcaaaca aggtgaatat aaaatcactc ctattgatga tatggctcaa
     6061 ttttatattt tttatcttaa agatagcacc ataccttatg ctcagtttat tttaatggat
     6121 aaaactatgt ttaatagtgc ttatgtgcaa atgtttttcc ttggaaatta tgataaaaat
     6181 ttgtatgatt tagtgattaa tgctagagat gcaaaagttt ttaaactcaa aatttaaagg
     6241 tttttacaat gagagtaggc tttttaactc acgcaggagc aagtatatat cattttagat
     6301 tgcctataat taaagctttg attgcaagag gagatgaggt ttttgtcata gtgccacaag
     6361 atgaatatac tgaaaaatta aaggctttaa atttaaatat cgttgtttat gagctttcaa
     6421 gagcgagttt aaatccttta attgttttta aaaatttttt acatcttaaa aatgttttaa
     6481 aaaacttaaa tttggatctt ttgcaaagtg gagctcataa gagcaatacc tttggtttaa
     6541 tagctgcaaa atatgccaaa attccttata aaatcggtct tgttgaggga cttggatctt
     6601 tttatataga caagggtttt aaagcaaatt tagtgcgttt tgttatcaat actctttata
     6661 aacttagttt taaaatcgct gattctttca tctttgtaaa tcaagctaat gcggatttta
     6721 tgcgaaattt aggacttaag gaaaataaaa tttgcgtgat taaatccgtg ggtatcaatc
     6781 ttaaaaaatt ctttcctatg agagtggagc aagaagctaa aaaagctttt tggcaaaatt
     6841 taaaaattga tgaaaagcct attgttttga tgatagctag ggctttgtgg cataaaggtg
     6901 taaaagaatt ttatgaaagt gcagagtatt taaaagatag ggcaaatttt gttttagtgg
     6961 gcggaagaga tgataatcct tcttgtgcga gtttggaatt tttaaattca ggcaaggttt
     7021 tttatttggg tgctagaagt gatatagtag aacttttgca aaattgcgat atctttgttt
     7081 tgccaagcta taaagaagga tttccagtaa gtgttttaga ggcgaaagct tgtggcaaag
     7141 ttattgtagt aagtgattgt gagggttgtg ttgaggcaat ttcaaatgct tatgatgggc
     7201 tttgggctaa gaccaaagat agtaaagatt taatagaaaa aatacaagtt ttattagaag
     7261 atgaaagttt aagaatcaat ctaggtaaaa atgcagctaa ggatgcttta caatacgatg
     7321 aaaatgttat cgcgcagcgt tatttagaac tttatgatag ggtgattaaa aatgtatgag
     7381 aaatggataa aaagaatttt tgattttgtt ttggctttgt ttcttttggt gcttttttcg
     7441 cctcttattt taatcactgc tttgctttta aaaataactc aaggtagtgt gatttttact
     7501 caaaatcgtc caggtttaaa tgaaaaaatt tttaaaattt ataaatttaa aaccatgagt
     7561 gatgaaagag atgaaaaggg cgagctctta agtgatgagt tgcgtttgaa ggcttttggg
     7621 aagattgtta gaagtttaag cttagatgag cttttacagc tttttaatgt attaaagggt
     7681 gatatgagtt ttgtgggtcc aagacctctt ttagtagaat acttacccct ttacaatgaa
     7741 gagcaaaaac tccgccataa agtgcgtcct ggtatcacag gatgggcaca ggtaaatggt
     7801 agaaatgcga tttcttggca aaaaaaattt gaacttgatg tgtattatgt aaaaaatatt
     7861 tcttttctac tagatttaaa aatcatgttc ttaacagcct taaaggtttt aaaaagaagc
     7921 ggagtaagca aagaaggtca tgttacaacg gagaaattta atggcaagaa ctgaaaaaat
     7981 ttacatttat ggtgcgagcg gacatgggct tgtttgtgct gatgtcgcta cgaatttggg
     8041 ctataaagaa tgtatttttt tagatgattt taagggtaaa aaatttgaaa gctctttgcc
     8101 aaaatatgat attttcatag ctattggaaa taatgaaata agaaaaaagc tttttaacca
     8161 aatttcagac agtggcttta agatcgtaaa tcttatccac aaaagtgcga ttattagcca
     8221 aagtgcggat atagcagaag atgctggaat tttaataatg ccttatgtgg tagtaaatgc
     8281 aaaagcaaaa atcaaaaaag gcgtgatttt aaatacttca agcgtgatag agcatgaatg
     8341 tgaggtgggt gagttttccc atataagcgt tggggctaag tgtgcaggaa atgtcaaaat
     8401 tggcaaaaat tgttttttag ggattaattc ttgtgttttg ccaaatttaa gtttggcaga
     8461 tgatagcatt ttagggggtg gggcgacttt agtgaaaagt caaagcgaaa agggtgtttt
     8521 tgtgggagtg cctgcaaaaa gaatgtagat attttaatcc ttaaaaagtt acttttaatc
     8581 ttaagatata ataaaaataa gctttgatcg caaaagaatt tttaatgttt gatacttagt
     8641 aaattatttt agataaaata catcatctta gtaaaatcac tgtttataat aaaggataaa
     8701 aaatgaggtt ttttctttct cctccgcaca tgggtggcaa tgagttaaaa tatatagaag
     8761 aagtatttaa aagcaattat atagctcctt tgggcgaatt tgtaaatcgt tttgaagaaa
     8821 gtgttaaaga ttacgctcaa tgcgaaaatg ctttggcgct aaattcagct acggccgctt
     8881 tgcacttggc tttaagagta gcaggagtgg agcaagatga tattgtttta gcttcatctt
     8941 ttacttttat tgcttcagtg gctcctattt gctatcttaa ggcaaaacct gtttttattg
     9001 attgtgatga gacttttaat atagatattg atctgttaaa gcttgctatt aaagagagcg
     9061 aaaaaaaacc aaaagcctta attttaactc atctttatgg caatgcggcc aaaatggatg
     9121 agatcgtcca aatttgcgaa aaagaaaata ttattttaat cgaagatgcc gccgaggctt
     9181 tgggaagttt ttacaagggt agggctttag gaacttttgg agaatttgga gcttattctt
     9241 ataatggaaa taaaatcatc accacttcag gcggtggtat gcttataggt aaagataagc
     9301 aaaaaatcga aagagcgaga ttttacagca ctcaggcaag ggaaaattgt ttgcattatg
     9361 aacatttaga ttatggttat aattaccgct tgagtaatgt tttaggcgct attggcgtgg
     9421 cgcaaatgga agttttagaa caaagagtgc taaaaaaaag agaaatttat gagtggtata
     9481 aagaattttt aggtgatagt tttgtctttt tagatgagct tgaaaattca agaagcaatc
     9541 gctggttaag cacggctttg attgattttg ataaaaacga aatgaatgct tatcaaaaat
     9601 gtatagaaat ttcgcaaaaa gacttgattt tgcatccaaa aatttcaaaa cttataacag
     9661 atttgcaaaa agagcaaatt gaaacacgcc cactttggaa agctatgcat actcaagagg
     9721 ttttcaaagg tgccaaggct tatgtaaatg gcaatagtga gttattcttt aaaaaaggga
     9781 tatgcttgcc aagtggcaca gcgatgagta aagacaatgt gcgtgaaatt tcagaactta
     9841 ttatcaagag cgtaaaggct tgatgatgga tttttataaa agcaaaaggc tgattttttt
     9901 cttatgtttt gatgcatttt tgtttatact ctctatattt ttagcttttt ctttgcgttt
     9961 tagcggggaa attcctagta ttttttatga gggtatgatt aaagcgggac ttattttact
    10021 ggttttaaaa atagcttttt tatttatttt tagaatttat aaggtggcat ggcggttttt
    10081 ttccttaagt gaagcaagaa agatattttt tgctttggtt ttggctgaaa tttgtttttt
    10141 gttgattttt tatttttacg atgatttttt caatcctttc ccgcgttcgg ttataggtat
    10201 tgatcttatt ctttcttata tgtttgtagg cactttaaga atttctaaaa gaatgcttat
    10261 agactttaag ccttcccgcg caaaagaaga agaaactcct tgtatagtgg tgggtgctac
    10321 ttcaaaggct ttgcatttgc taaagggagc aaaggaaggc tctttgggtc tttttcctgt
    10381 gggtgttgta gatgctagaa gagagcttat aggaacatat tgcgataaat ttatcgttga
    10441 agataaaagt aaaattaaag attatgtcaa tgaaggtgtt aaaactgcta ttatagcttt
    10501 aaaactagat caagctgagc ttaaagcttt gtttgaagag cttattgctt atggaatcag
    10561 tgatgttaag attttttctt ttacaagaaa tgaagcaaga gatatcagca tagaagattt
    10621 gcttgctaga aaacctaaag atttagatga tagtgctgtg gcttcatttt taaaagataa
    10681 agtagttttg gtaagtggcg caggcggaac tataggaagt gagctttgta agcagtgtat
    10741 taaatttggt gcaaaacatc ttataatgct tgatcatagc gaatttaatc tttataagat
    10801 taatgaagat ttaagcttat ataaagaaaa aattacccct gttttgctta gtattttaga
    10861 cgagcaaagt ttagatgaga ttattaagga gtataagcct gaattgattt tgcatgcagc
    10921 tgcttataag catgtgcctc tttgtgagca aaatccgcat tctgctgtgc ttaataatat
    10981 cgtaggtact aaaactctat gcgatgtagc taaaaaaaat aaagtaaaaa aatttgttat
    11041 gataagtaca gataaggcgg tacgtccaac aaatatcatg ggatgcacta aaagagtatg
    11101 tgagctttat accttaaatt cgagtgatga aaattttgaa gtttcttgtg tgcgctttgg
    11161 aaatgtttta ggatcaagtg gaagtgtgat acctaaattt aaagctcaaa ttgcaaataa
    11221 tgagccatta accttaactc accctgatat agtgcgttat tttatgctag taagtgaagc
    11281 agtgcagctt gttttgcaag ctggagctat cgcaaaaggg ggtgagcttt ttgtgctgga
    11341 tatgggcgag ccggttaaga ttatggactt ggctaaaaaa atgcttattc tatccaaccg
    11401 agaagactta gagataaaaa tcacaggttt aagacgtgga gaaaagcttt ttgaagaatt
    11461 gctaatcgat gagaatgatg caaagacaga atatgagagt atttttgttg ctaaaaatga
    11521 aaagatggat attcaaattt taaatgatta tattaaaaaa ttgcaagatt gccaaaatat
    11581 agctgaaatt ttaaaagaaa tagttcctga attta
//
LOCUS       DBBXRO010000046        11384 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.046, whole genome shotgun sequence.
ACCESSION   DBBXRO010000046 DBBXRO010000000
VERSION     DBBXRO010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11384
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.046"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            39..566
                     /gene="tpx"
                     /locus_tag="ACJFEZ_000920"
     CDS             39..566
                     /gene="tpx"
                     /locus_tag="ACJFEZ_000920"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0016684 - oxidoreductase activity, acting
                     on peroxide as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HGG0917050.1"
                     /translation="MSSVNFKGNPVKLKGNSVEVGADAPKVGLKAKDLSTIEIGAAGK
                     TQIVLSLPSLDTPVCATEAREFNKKVASYNGAEVVVVSMDLPFAMGRFCSTEGIENLS
                     VTSDFVAKEFGEKYGVLIGEGPLEGLLARAVFVIKDGKIAYKELVSEVTEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            836..3610
                     /gene="napA"
                     /locus_tag="ACJFEZ_000921"
     CDS             836..3610
                     /gene="napA"
                     /locus_tag="ACJFEZ_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_process: GO:0042126 - nitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HGG0917051.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSPVFGAQEEEWKWDKAVCRF
                     CGTGCGIMIARKDGKIVAIKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMND
                     KGEFDKKGKFKQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKIVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDKKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVAKENAITLDEEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFEEFKKGLAPYTLEYTAKVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLG
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWITAARDMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DGKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFTSNDAVMKDYDNSEVKGDERK
                     IQGSDGKEFKGYGFFVQKYLWEEYRKFGLGHGHDLADFNTYHQVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGEFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPNEEYPFWLSTGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            3628..4368
                     /gene="napG"
                     /locus_tag="ACJFEZ_000922"
     CDS             3628..4368
                     /gene="napG"
                     /locus_tag="ACJFEZ_000922"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HGG0917052.1"
                     /translation="MKDRREFFASAFKGLCLCTAGGFLANLSLKADDDYALRPPGAED
                     EARFLSKCIRCGLCVKACPYNTLKLATLLDSAKNGTPFFKAREIPCYLCKDIPCIKEC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDQE
                     DEDRIKDADTSKYFDAKKATNYLNEGEF"
     gene            4365..5150
                     /gene="napH"
                     /locus_tag="ACJFEZ_000923"
     CDS             4365..5150
                     /gene="napH"
                     /locus_tag="ACJFEZ_000923"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HGG0917053.1"
                     /translation="MMRCLIARRIVQIGILALFSFKATDFILKGNLSSSRLFDTLPLS
                     DPFAVIQIYLASFSIDLMALMGALIVLILYGVFLGRAFCAWVCPVNLITDFAAFVRSK
                     MAFKQSKVLILSKNLRYYILALSLILSFVLSLPVFESMSYIGIIHRGIIFGTTSWIFI
                     AFILFCIDAFLSPRAICSHLCPLGAFYALISRFALLKIKHNHQKCTKCYKCIGICPEK
                     QVLWMIAKESASVNSGECIRCGRCVEVCNDDALNFNIFDLRKK"
     gene            5147..5671
                     /locus_tag="ACJFEZ_000924"
     CDS             5147..5671
                     /locus_tag="ACJFEZ_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HGG0917054.1"
                     /translation="MMKKKTILLGSVAIMFLAACALNSGVSSEQIGLRKASLENENKV
                     ALVDASFTALQPGESVLFERSFENAPPLISHTIEDMLPITKDNNTCLSCHDKAIATDV
                     GATPLPASHYYDFRTNKTTGDAISDSRFNCTQCHVPQSDAKPLVGNSFKAEFKNEGLK
                     NRSNLIDVINEGVE"
     gene            5676..6596
                     /locus_tag="ACJFEZ_000925"
     CDS             5676..6596
                     /locus_tag="ACJFEZ_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HGG0917055.1"
                     /translation="MKKILFILSFLYILSPAYELKLNSNITALKLDQQELYIGTDKGE
                     IYEYNLKDKSLKELLSLPKIKNYYEGDFARIYNIDVYQNSLLILSEGDFGAKNLSLYN
                     NNLQIQTLQESSVKEAFFIDENTYLLVLLGSKIELVDKDLKRINEFKFSHSSLNDAAL
                     NEEKTKFIAGFESGEVELFDLKSWKILKNYDKMHKDNIYQVDFKNDTLISCGTDRRIG
                     LVKNEEQTFLQKDFLIYTCALSPSGKLAAYSDNEEGFNEVFDTNTLKTVRIFKDENLM
                     SEIIIFINERELIISGFGDKIVFRSLDESF"
     gene            6583..6918
                     /locus_tag="ACJFEZ_000926"
     CDS             6583..6918
                     /locus_tag="ACJFEZ_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HGG0917056.1"
                     /translation="MNLSSVLIVAKVQHIDELKKEILKIPSCSIELCENEKIIVVIES
                     ESLEKELESYKMLEKLPHIISINMVFSYQDLDKDIQKAINSGAIQTIEKNENAENIRY
                     YGSIYNQMS"
     gene            6932..7108
                     /locus_tag="ACJFEZ_000927"
     CDS             6932..7108
                     /locus_tag="ACJFEZ_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917057.1"
                     /translation="MVFLIPLLIIIAIIFGIDYLYFNDENVKVKEERQIHKSDPNLDK
                     QREEYLKHLFKEKK"
     gene            7105..7785
                     /locus_tag="ACJFEZ_000928"
     CDS             7105..7785
                     /locus_tag="ACJFEZ_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HGG0917058.1"
                     /translation="MKQRELFLLTIPVLMGYIPLGAAFGILAASKDFSLFEILLSSIF
                     IYAGAGQFLLVALVAQNVSFLMIFFTLFLLNFRHFFYTLSLLKELKSINFLRHYIIFA
                     LTDESFALLSSIKEKIKNLSRAQRSLIMFEVCLLNQIYWVIGSVLGYYFKQGLNIDYS
                     GVEFSLNALFIVLAYELYKQNPNLKILLYSSFVALFALFCIDKPYMLAFCIFIALMIL
                     IFGKKYVR"
     gene            7775..8095
                     /locus_tag="ACJFEZ_000929"
     CDS             7775..8095
                     /locus_tag="ACJFEZ_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter permease"
                     /protein_id="HGG0917059.1"
                     /translation="MLDKNILYAILAASLATYLTRVLAFILFKNKKENYHLLFVQYNM
                     PLVIIIILFFYTFYEVDFYSYPYGLDFIVSCILVFLIHLLFKNALLSIILGTIFYMFV
                     LRLF"
     gene            8095..8676
                     /locus_tag="ACJFEZ_000930"
     CDS             8095..8676
                     /locus_tag="ACJFEZ_000930"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HGG0917060.1"
                     /translation="MDYTLFILTFVSVSLLPGLCMSLAFSLGLSLGYKNTLWMIFGEL
                     VGLALVVLCCALGIEFILRYENLFKFFQIAGALYLLYIAFILFKSKSQITQEKIIHKK
                     KFSLIIQGFIASSSNPKAWIFMFSILPSFLKFQVNVNILLLIILLIEFCSLSLYALGG
                     SIFKIFMNKHLDKINKISALFIFAMALSVLYKV"
     gene            8721..8969
                     /locus_tag="ACJFEZ_000931"
     CDS             8721..8969
                     /locus_tag="ACJFEZ_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system YbgF family protein"
                     /protein_id="HGG0917061.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPNNQNAIDAVRR
                     LSGFRSKHQDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            8966..9463
                     /locus_tag="ACJFEZ_000932"
     CDS             8966..9463
                     /locus_tag="ACJFEZ_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HGG0917062.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQSEILKEQEELRKTQIQEDMP
                     TVKLKEEPILEQELEDKISMAKFEEEQKIQEEIKNLDELNQENKEPVKEEAVLQSEIL
                     NPSIIAEVQTLNEDIFLKHLRERILVLFEGLNSVKEENLEHRLQLTINFLEFLLANIE
                     DKLKK"
     gene            9432..10547
                     /locus_tag="ACJFEZ_000933"
     CDS             9432..10547
                     /locus_tag="ACJFEZ_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HGG0917063.1"
                     /translation="MQTSKISLKNNADLKFVIDFLSPYTQRAYLVGGSVRDLFLGLEI
                     YDYDIELYDITPSDFEKMMKKLGAQGFGKSFFVYKFKNYDFALARTENKTGYGHTGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLEQGILRHIDQTSFQEDSL
                     RILRAVAFASRFDFKIADESLKLMQSMNIKDLSRDRINAELYKFFKSSKLEVGYKYLQ
                     ELNMEKEIFGFDSAFKSMEFQALLRKSREVVKDDALFLYLYLNFFNLNKEEFFKKSKI
                     KKEYFKKANQAFYLDEMSDFDLASIALDMPLKEWLGLWDKERIKWAKKFKLYENKFKT
                     SILAKDFLDAGIYGKMLGLKLKEARENELYEYIKRLN"
     gene            10548..11372
                     /gene="purU"
                     /locus_tag="ACJFEZ_000934"
     CDS             10548..11372
                     /gene="purU"
                     /locus_tag="ACJFEZ_000934"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HGG0917064.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEEMFFF
                     RAILEGEFDKKAFVGTLEAMLGEEAYIELCEKRKKDIIVFATKESHCLGDLLIKYYSN
                     ELEANIKAVISNHDTLKNLVEKFEIPYHCISAENLKREEQEKQVLECLKEYQFDYLVL
                     AKYMRILSPDFVKHFEGKIVNIHHSFLPAFVGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVLPVSHEYTWQDMQQAGRNVEKNVLSKALDLVFDDRIFIHKNKTIVF"
BASE COUNT         3845 a         1390 c         2227 g         3922 t
ORIGIN      
        1 caaaaatgtt tcaatttata aaaataaagg atgacaaaat gagttcagta aattttaaag
       61 gaaacccagt aaaacttaaa ggaaattcag tagaagttgg agcagatgct cctaaagtag
      121 gacttaaagc taaagattta agcacgattg aaattggtgc tgcaggtaaa acacaaattg
      181 ttttaagtct tccaagctta gatactccag tttgcgcaac tgaagcaaga gaatttaaca
      241 aaaaagtagc aagctacaat ggagctgaag ttgtggttgt aagtatggat ttaccttttg
      301 ctatgggtag attttgcagt actgaaggta tagaaaatct aagtgttact agcgattttg
      361 tagcaaaaga atttggagaa aaatatggcg ttttaattgg tgaaggtcca ctagaaggtc
      421 ttttagctcg tgctgtattt gtaatcaaag atggtaaaat cgcttataaa gaattagtaa
      481 gtgaagtgac agaaatgcca gatattgcaa aacttgatgc attttttggt ggctctagct
      541 gctgcggcgg atgcggttgt cattaatttt ctacatataa agcccccaat ggggctactt
      601 tcttagcttt tcaaacaaaa tcatttatca aacattattt tatattttta ttagattaga
      661 gttttctagc ctgttttatt tttttataat cttattattt caaaaatgat aaaaggacaa
      721 taaaagtcct ataaaatagg gcttttaaat tattattttt tgcaaaaaat tcaagataat
      781 tttattttct attttttata ataaaacgat ttttattatt ttggaggatt agagtatgaa
      841 tagaagggat tttattaaaa ataccgctat tgcgagtgct gctagtgttg caggtcttag
      901 tgtcccaagc ccagtatttg gcgcacaaga ggaagaatgg aaatgggata aagccgtttg
      961 tagattttgc ggaacgggct gtggaattat gatagctaga aaagatggca aaattgtagc
     1021 aatcaaaggt gatcctgctg ctcctgtaaa tcgtggtctt aattgtatta aaggatattt
     1081 taacgctaaa atcatgtatg gagaagatcg tcttgttatg cctttgcttc gtatgaatga
     1141 taagggagaa tttgacaaaa aaggaaaatt caagcaagtt tcctggcaaa gagcttttga
     1201 tgagatggaa aaacaattta aaaaagctta caatgaactc ggcgttacag gtatagggat
     1261 ttttggtagt gggcaataca ctatccaaga aggttatgct gctttaaaac ttgcaaaagc
     1321 gggttttaga acaaataata tcgatccaaa tgcaagacat tgtatggcct ctgcagtggt
     1381 tggttttatg caaacttttg gtgtagatga gccatcaggc tgttatgatg atatagagct
     1441 tacagatact attatcactt ggggagctaa tatggctgaa atgcacccaa tcctttggtc
     1501 aagagttagc gatagaaagc taagcaatct tgataaagtt aaaattgtga atttaagcac
     1561 tttttctaat cgtacttcaa atattgctga tattgaaatc atttttaaac ctaatacaga
     1621 tttagctatt tggaactata tagcaagaga gattgtttat aatcatcctg aagctatgga
     1681 taaaaaattc attaaagatc attgtgtatt tgcaacaggt tatgcagata ttggttatgg
     1741 catgagaaat aatccaaacc atcctaaatt taaagaaagc gaaaaagata ccgttgcaaa
     1801 agaaaatgca atcactttag atgaagaaga agcaacctct ctttcttatc ttggtgtgaa
     1861 agcgggtgat aaatttgaaa tgaaacatca aggcgtagct gataagaatt gggaaatttc
     1921 ttttgaagaa ttcaaaaaag gtttagcacc ttatacttta gaatataccg caaaagtagc
     1981 caagggtgat gataatgaat ctttagaaga ttttaagaaa aaactccaag aattggctaa
     2041 tttatatata gaaaaaaatc gtaaagtagt gagcttttgg actatgggct ttaaccaaca
     2101 cacaagaggc tcttgggtaa atgaacaagc ttatatggtg cattttttac ttggcaaaca
     2161 agctaagcca ggtagtgggg ctttctcttt aacaggacaa ccaagtgctt gtggaactgc
     2221 tagagaggta ggaacattct ctcaccgctt gcctgcagat atggtcgtgg caaatccaaa
     2281 acacagagaa atttcagaaa aaatttggaa agtgcctgca aaaacaatca atccaaaacc
     2341 aggttcgcct tatcttggta ttatgaggga tttagaggat ggtaagatta aatttgcttg
     2401 ggttcaagta aataatccat ggcaaaatac cgcaaatgca aatcactgga tcacagcagc
     2461 tagagatatg gataatttta tcgttgtgag tgattgttat cctggaattt cagcaaaagt
     2521 agccgatctt atcttgccaa gtgcgatgat ttatgaaaaa tggggtgctt atggtaatgc
     2581 tgaaagaaga actcaacact ggaaacaaca agttttacct gtaggtgctg ctatgagtga
     2641 tacttggcaa attttagaat ttgcaaaacg ctttaagctt aaagaggttt ggaaagaaca
     2701 aaaagtagat ggtaagctta ctttaccaag tgtactagaa gaagcaaaag ctatgggtta
     2761 tagcgaagat gatacgcttt ttgatgtttt atttgccaat aaagaagcaa aaagctttac
     2821 ttcaaatgat gctgttatga aagattatga caatagtgaa gttaagggtg atgaaagaaa
     2881 aattcaaggc agtgatggaa aagaatttaa aggatatggc ttttttgttc aaaaatatct
     2941 ttgggaagag tatcgtaaat ttggtttagg ccatggtcat gatttggctg attttaacac
     3001 ttatcatcaa gtaagaggtc taagatggcc agtggtaaat ggtaaagaaa cacaatggag
     3061 atttaatact aaatttgatt attatgccaa aaaagctgct ccaaattcag attttgcttt
     3121 ctatggtgaa tttaataaaa tgcttaccaa tggggatttg atagctccta aggatgaaaa
     3181 agaacatagt attaaaaata aagctaaaat tttctttaga ccatttatga aagcacctga
     3241 aagaccaaat gaagagtatc cattctggct ttcaactgga agggttttag agcattggca
     3301 tagtgggact atgactatgc gtgtgccaga gctttaccgt gctgttccag aggcactttg
     3361 ttatatgagt gaaaaagatg gtgaaaaatt aggtttaaat caaggagatt tagtttgggt
     3421 agaatcgcgt cgtggtaaag taaaagcaag agtagatatg cgtggcagaa acaaaccacc
     3481 tgtaggactt gtttatgtgc cttggtttga tgagaatgta tatatcaata aagttactct
     3541 agatgcaact tgcccacttt ctaagcaaac tgactttaaa aaatgtgcgg taaaaatcta
     3601 taaagcttaa gataaaggtt tgatttgatg aaagatagaa gagaattttt tgctagtgct
     3661 tttaaaggtt tgtgtctttg tactgcgggt ggatttttgg caaatttaag cttaaaggct
     3721 gacgatgatt acgccttgag gccaccagga gctgaagatg aggcgagatt tttaagcaaa
     3781 tgtattcgtt gtggtttgtg tgtaaaagcc tgtccataca atactttaaa acttgctact
     3841 ttgttagata gtgcaaaaaa cggaactcct ttttttaagg ctagagaaat tccttgttat
     3901 ctttgcaagg acataccatg tattaaggaa tgtccaaccg atgctttgga taaaaaacat
     3961 ttagagcagg gcatagaatc tttaaaaatg ggtattgcga tcgtagatag tgcttcttgt
     4021 gtagcgcatt ggggaattca gtgtgatgct tgttatagag cttgtccttt gatagatagg
     4081 gctttaaaac ttgaacttaa acgcaatgag cgcactgcta agcacgcctt tttattgcct
     4141 agtgttgatc atgaagtatg cgtaggctgt gggctttgcg agcttgcgtg tattacggaa
     4201 aagcctgcta ttcgtgtttt accacgcgag tatgttttag gtaaggctgg ttcgcattat
     4261 gtaaagggct gggatcaaga ggatgaagat cgtataaaag atgcagatac ttctaaatat
     4321 tttgatgcta aaaaggcaac aaattattta aatgagggag aattttgatg aggtgtttaa
     4381 tcgctagacg catcgttcaa atcggaattt tagctctttt tagttttaag gctacggatt
     4441 ttatcttaaa aggaaattta agttcttcta ggctttttga taccctgcct ttaagcgatc
     4501 cttttgcagt gattcaaatt tatttagcaa gttttagcat agatttaatg gcacttatgg
     4561 gagctttgat cgttttaatt ctttatggag ttttcttagg tcgtgctttt tgtgcttggg
     4621 tatgccctgt aaatttgatt actgattttg ctgcctttgt tcgctctaaa atggctttta
     4681 aacagagtaa ggttttaatc ttaagtaaaa atttaagata ttatatttta gctttgagtt
     4741 taattctttc ttttgtattg tctttgcctg tatttgaaag tatgtcttat ataggcatta
     4801 tacatagagg gattattttt ggcaccactt cttggatatt tatagctttt atactttttt
     4861 gtatagatgc ttttttgagt cctagagcga tatgttcgca tttgtgtcct ttaggggctt
     4921 tttatgctct catctctcgt tttgcgcttt taaaaatcaa gcacaatcat caaaaatgca
     4981 ctaagtgtta taaatgtatt ggaatttgtc ctgaaaaaca agttctttgg atgatagcta
     5041 aagaaagcgc gagtgtaaat tcgggggaat gtataagatg tggacgctgt gtagaagtgt
     5101 gtaacgatga tgctttaaat tttaatatat ttgatttaag gaaaaaataa tgaaaaagaa
     5161 aacgatttta ctaggaagcg ttgctataat gtttttagcc gcttgtgcgt taaatagtgg
     5221 ggtgagttca gagcaaattg gacttaggaa agcaagtttg gaaaatgaaa ataaggtagc
     5281 tttggtcgat gctagtttta ctgctttaca gccaggtgaa tctgtgcttt ttgagcgttc
     5341 ttttgaaaat gcaccaccgc ttatttcgca tactattgag gatatgttgc ctattactaa
     5401 ggataataac acctgcctta gttgccatga taaagcaatt gcaaccgatg ttggcgcaac
     5461 tcctcttcct gcgagtcatt attatgattt tagaactaat aaaaccacag gagatgcgat
     5521 cagtgattcg cgctttaatt gtacccaatg tcatgttcca caaagtgatg caaaaccttt
     5581 agttggaaat agttttaagg ctgaatttaa aaatgaaggc ttgaaaaatc gttctaattt
     5641 aatcgatgta attaatgaag gtgttgagta aaataatgaa aaaaattctt ttcattttaa
     5701 gctttttata tattttatct cctgcttatg agctaaagct taattcaaat attacagctt
     5761 taaagcttga tcagcaggag ctgtatatag gcactgataa gggtgagatt tatgagtata
     5821 atctaaaaga taaaagctta aaagaacttt tatctttgcc taaaattaaa aattattatg
     5881 agggtgattt tgctagaatt tataatatcg atgtttatca aaattctctt ttgatactta
     5941 gcgaaggcga ttttggagca aaaaatttaa gcctttataa taacaatctt caaattcaaa
     6001 cacttcaaga aagcagtgtt aaagaggctt tttttataga tgaaaatacc tatcttttgg
     6061 ttttattggg ttctaaaata gagcttgttg ataaggattt aaagcgtata aatgagttta
     6121 aattctctca ttctagttta aatgatgcag ctttaaatga agaaaaaacc aagtttatag
     6181 caggatttga aagtggggag gtggaacttt ttgatttgaa aagttggaaa atattaaaaa
     6241 actatgataa aatgcacaaa gataatatct atcaagttga ttttaaaaat gatactctta
     6301 taagttgcgg cacagatagg cgtataggtt tggtaaaaaa tgaagagcaa acttttttgc
     6361 aaaaagattt tttaatctat acttgcgctt taagtcctag tgggaaattg gctgcgtata
     6421 gtgataatga agagggtttt aatgaggttt ttgatacaaa taccctaaaa actgttagaa
     6481 ttttcaagga tgaaaattta atgagtgaaa ttatcatttt tatcaacgaa agagaattga
     6541 ttatctcagg ctttggagat aaaattgtat ttaggagttt agatgaatct ttctagcgtt
     6601 ttgatcgtag ctaaagtaca acatatagat gaattaaaaa aagaaatctt aaaaattcct
     6661 tcatgttcaa tagagctttg tgagaatgaa aaaatcatcg ttgtgataga aagtgaaagt
     6721 ttagaaaaag agcttgagtc ttacaaaatg cttgaaaaat tacctcatat tatcagtata
     6781 aatatggttt tttcttatca agatttggat aaagatatcc aaaaagctat aaatagcgga
     6841 gcgatacaaa ctatagaaaa aaatgaaaat gctgaaaata ttcgttatta tggtagtatt
     6901 tacaatcaaa tgtcttgatt aaagctttta gatggttttt ttaattcctt tgcttattat
     6961 tatagctatt atttttggta ttgattattt gtattttaat gatgaaaatg tcaaagtaaa
     7021 agaagagcga caaattcata aaagcgatcc aaatttagat aaacaaagag aagaatatct
     7081 aaaacattta ttcaaagaga aaaaatgaag caaagagaac tctttcttct tactatccct
     7141 gttttaatgg gttatatccc tttaggggct gcttttggaa ttttagctgc tagtaaagat
     7201 ttttctttgt ttgaaatttt gcttagttca atttttattt atgcaggtgc tgggcaattt
     7261 cttttagtag ctttagtggc gcaaaatgta tcttttttga tgattttttt tactttgttt
     7321 ttattgaatt ttcgccattt tttctatact ttatcacttt taaaagagct aaaatccatt
     7381 aattttctaa ggcactatat tatctttgct ttaacagatg aaagttttgc tcttttaagc
     7441 tctattaaag agaaaatcaa aaatcttagt cgtgcgcaaa gatcgcttat tatgtttgaa
     7501 gtttgtttat tgaatcaaat ttattgggta ataggttctg ttttgggtta ttattttaag
     7561 cagggtttaa atattgatta ttcgggtgta gaatttagtc ttaatgccct ttttattgtg
     7621 ctagcttatg agctttataa acaaaatcct aatttaaaaa ttttacttta ttcttctttt
     7681 gtggcacttt ttgctttatt ttgcatagac aagccttata tgttggcttt ttgtattttt
     7741 atcgctctga tgattttgat ttttggaaaa aaatatgtta gataaaaata ttttatatgc
     7801 gattttagca gcttctttag cgacttattt aactcgtgtt ttagctttta ttttgtttaa
     7861 aaataaaaaa gaaaactatc acttgctttt tgtgcagtat aatatgcctt tagttatcat
     7921 catcatttta tttttttata ctttttatga ggtggatttt tattcttatc cttatgggct
     7981 tgattttatt gtatcttgta ttttggtatt tttgatacat ctgcttttta aaaatgcact
     8041 tcttagcatt attttaggaa ctatttttta tatgtttgtg ttaagattgt tttaatggac
     8101 tatactttat ttatcttgac ttttgtttcg gtttctttac tgccaggatt gtgtatgagc
     8161 ctagcttttt ccttgggact ttctttagga tataaaaata ctttatggat gatatttggc
     8221 gagcttgtgg gattagcatt agtggttttg tgttgtgctt tggggataga gtttattttg
     8281 cgatatgaaa atttatttaa attttttcaa atagcgggtg ctttatatct tttatatatt
     8341 gcttttatat tgtttaaatc aaaaagtcaa attactcaag aaaaaatcat ccataagaaa
     8401 aaattttctc ttatcatcca aggctttata gcttcatctt ctaatccaaa agcatggatt
     8461 tttatgtttt ccatcttgcc ttctttttta aaatttcaag tgaatgtaaa tattttgctt
     8521 ttgattattt tgttgataga attttgctct ttaagtcttt atgctttagg cggaagtata
     8581 tttaagatct ttatgaataa gcatttagat aaaatcaata aaatcagcgc tttgtttatc
     8641 tttgcaatgg ctcttagcgt attatataaa gtttaactta aaatgctttt tgctaaaatt
     8701 aaaaaaaaat attaggaaag ataatgaaaa acacagttac agaagcttcc atttatgaag
     8761 cccaagggct taaggatgaa gctttagaga tttataaaaa tattttaaaa gaagatccta
     8821 ataaccaaaa tgcaattgat gcagtgcgtc gtcttagtgg gtttcgttct aagcatcagg
     8881 atttaaatac tcaaatgctt gattttttta taaatatgaa aagcgatgaa gagatcaatg
     8941 aatttaaaag gtggttgata aaaatatgaa tttagaagat ttggcaaaga aaactatcag
     9001 tgaagttagc tctatcatgg aagaacaaag aaggcaaagt gaaattctaa aagaacaaga
     9061 agagcttaga aagactcaaa ttcaagagga tatgcctacg gttaaactta aggaagagcc
     9121 tattttggag caagaattag aagataaaat ttctatggcg aaatttgaag aagagcaaaa
     9181 aattcaagaa gagataaaaa atttagatga attaaatcaa gaaaataaag agccagttaa
     9241 agaagaggct gttttgcaaa gtgaaatttt aaaccctagt attatagcag aggtgcaaac
     9301 tcttaatgaa gatatatttt taaaacacct tagagaaaga attttggttc tttttgaggg
     9361 tttaaatagt gttaaggagg agaatttgga acacagactt caattaacta ttaatttttt
     9421 agagtttttg cttgcaaaca tcgaagataa gcttaaaaaa taatgcagat ttaaaatttg
     9481 tcattgattt tctaagtccc tatactcaaa gggcttattt ggttggtggg agtgtaaggg
     9541 atttattttt aggtttagaa atttatgatt atgatataga gctttacgat ataacgccta
     9601 gtgattttga aaaaatgatg aaaaaactag gcgcgcaagg ctttggaaaa agtttttttg
     9661 tatataaatt taaaaattat gattttgctc ttgctagaac tgaaaacaag acaggttatg
     9721 ggcatacggg ttttgaggtg caaatttgta atgatgaaaa attaggcgcc aaaagacgcg
     9781 attttactat aaattctatg atgatcaatc tttttaatga tgagttttta gacttttatg
     9841 gaggattaaa agatctagag cagggcattt taaggcatat tgatcaaaca agttttcaag
     9901 aagatagttt aagaatttta agagcagtgg cttttgcttc aagatttgat tttaaaatag
     9961 cagatgaaag cttaaaatta atgcaaagca tgaatataaa agatcttagc agagatagga
    10021 tcaatgctga gctttataaa ttttttaaaa gctctaagct tgaagtgggc tataaatatt
    10081 tacaagagct taatatggaa aaagaaattt ttggctttga tagtgctttt aaaagcatgg
    10141 aatttcaagc tttgcttaga aaaagtagag aagtagttaa agacgatgct ttgtttttgt
    10201 atttgtattt aaattttttt aatttaaaca aagaggaatt ttttaaaaaa agcaaaataa
    10261 aaaaagagta tttcaaaaag gcaaatcaag ctttttatct tgatgaaatg agtgattttg
    10321 atttagcaag tattgctttg gatatgcctt taaaagaatg gcttgggctt tgggataaag
    10381 agcgcataaa gtgggctaaa aaattcaaac tttatgagaa caaatttaaa acaagtattt
    10441 tagcaaaaga ttttcttgat gctggaattt atggtaaaat gttgggttta aagcttaaag
    10501 aagcaagaga aaatgaatta tatgaatata ttaaaaggtt aaattaaatg atttctgtat
    10561 taaaaatttg caccaaggat caaaaaggtt tgatttatcg tatttctgat gtgattttta
    10621 aatatcatat caatatagta aaaaatgatg aatttgtggg cgaagaaatg ttttttttcc
    10681 gcgctatttt agagggtgaa tttgataaaa aagcctttgt tgggacactt gaggcgatgt
    10741 tgggagaaga agcttatata gagctttgtg aaaaaagaaa gaaagatatt attgtttttg
    10801 ctactaaaga aagccattgt ttgggagatt tattgatcaa gtattatagc aatgagcttg
    10861 aggctaatat caaagccgtg atttctaatc acgacactct taaaaactta gtagaaaaat
    10921 ttgaaatccc ttatcattgc atcagtgcag aaaatttaaa gcgcgaagag caggaaaaac
    10981 aagttttaga atgtttaaaa gaatatcaat ttgattattt ggttttggca aaatatatga
    11041 gaattttatc ccctgatttt gtcaaacatt ttgaaggaaa gatagttaat atccatcatt
    11101 ctttcttgcc tgcatttgtg ggagcaaatc cctataaaca agcttttgag cgtggggtga
    11161 agattattgg agctacggca cattttgtta ataataatct tgatgaaggg ccgattatca
    11221 ctcaagcagt tttgcctgta agtcatgaat acacttggca agatatgcag caagctggac
    11281 gcaatgttga aaaaaatgtg ctttcaaaag ctcttgattt ggtttttgat gatagaattt
    11341 ttatacataa aaataaaacc atagtatttt gataaaagat tgag
//
LOCUS       DBBXRO010000047        11248 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.047, whole genome shotgun sequence.
ACCESSION   DBBXRO010000047 DBBXRO010000000
VERSION     DBBXRO010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11248
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.047"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            112..423
                     /gene="rpsJ"
                     /locus_tag="ACJFEZ_000935"
     CDS             112..423
                     /gene="rpsJ"
                     /locus_tag="ACJFEZ_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HGG0917065.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            433..1008
                     /gene="rplC"
                     /locus_tag="ACJFEZ_000936"
     CDS             433..1008
                     /gene="rplC"
                     /locus_tag="ACJFEZ_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HGG0917066.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            1005..1619
                     /gene="rplD"
                     /locus_tag="ACJFEZ_000937"
     CDS             1005..1619
                     /gene="rplD"
                     /locus_tag="ACJFEZ_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HGG0917067.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            1622..1903
                     /locus_tag="ACJFEZ_000938"
     CDS             1622..1903
                     /locus_tag="ACJFEZ_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HGG0917068.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLESMEA"
     gene            1905..2735
                     /gene="rplB"
                     /locus_tag="ACJFEZ_000939"
     CDS             1905..2735
                     /gene="rplB"
                     /locus_tag="ACJFEZ_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HGG0917069.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALISYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            2737..3018
                     /gene="rpsS"
                     /locus_tag="ACJFEZ_000940"
     CDS             2737..3018
                     /gene="rpsS"
                     /locus_tag="ACJFEZ_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HGG0917070.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTIIPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            3029..3436
                     /gene="rplV"
                     /locus_tag="ACJFEZ_000941"
     CDS             3029..3436
                     /gene="rplV"
                     /locus_tag="ACJFEZ_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HGG0917071.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVVVKSCRVDAGAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKTEAKKAVAKKTPVKKTSTKKVTAEKES"
     gene            3436..4137
                     /gene="rpsC"
                     /locus_tag="ACJFEZ_000942"
     CDS             3436..4137
                     /gene="rpsC"
                     /locus_tag="ACJFEZ_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HGG0917072.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLQKGLQTEKTE
                     ESAPAKKQRRTRRSK"
     gene            4140..4565
                     /gene="rplP"
                     /locus_tag="ACJFEZ_000943"
     CDS             4140..4565
                     /gene="rplP"
                     /locus_tag="ACJFEZ_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HGG0917073.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            4552..4737
                     /gene="rpmC"
                     /locus_tag="ACJFEZ_000944"
     CDS             4552..4737
                     /gene="rpmC"
                     /locus_tag="ACJFEZ_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HGG0917074.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     EVRKDIARINTAINALK"
     gene            4747..4998
                     /gene="rpsQ"
                     /locus_tag="ACJFEZ_000945"
     CDS             4747..4998
                     /gene="rpsQ"
                     /locus_tag="ACJFEZ_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HGG0917075.1"
                     /translation="MAFKREIQGVVVKIAGEKTASILVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            4998..5366
                     /gene="rplN"
                     /locus_tag="ACJFEZ_000946"
     CDS             4998..5366
                     /gene="rplN"
                     /locus_tag="ACJFEZ_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011567679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HGG0917076.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            5366..5599
                     /gene="rplX"
                     /locus_tag="ACJFEZ_000947"
     CDS             5366..5599
                     /gene="rplX"
                     /locus_tag="ACJFEZ_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HGG0917077.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            5603..6148
                     /gene="rplE"
                     /locus_tag="ACJFEZ_000948"
     CDS             5603..6148
                     /gene="rplE"
                     /locus_tag="ACJFEZ_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HGG0917078.1"
                     /translation="MMRLKEKYDQSIKPALVKEFDIKNPMLIPAIEKIVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMFAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKEAQKLLELIGVPFTKGK"
     gene            6150..6335
                     /locus_tag="ACJFEZ_000949"
     CDS             6150..6335
                     /locus_tag="ACJFEZ_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003948630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HGG0917079.1"
                     /translation="MAKKSMIAKAARKPKFKVRGYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            6345..6740
                     /gene="rpsH"
                     /locus_tag="ACJFEZ_000950"
     CDS             6345..6740
                     /gene="rpsH"
                     /locus_tag="ACJFEZ_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HGG0917080.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRVSKPGRRVYKGKEEIKRFKNGYGT
                     IVVSTSRGVLANDEAYKAGVGGEILCTIW"
     gene            6818..7354
                     /gene="rplF"
                     /locus_tag="ACJFEZ_000951"
     CDS             6818..7354
                     /gene="rplF"
                     /locus_tag="ACJFEZ_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HGG0917081.1"
                     /translation="MSRIGKQPIAIPSGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEITVDKNNVIIKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            7364..7720
                     /gene="rplR"
                     /locus_tag="ACJFEZ_000952"
     CDS             7364..7720
                     /gene="rplR"
                     /locus_tag="ACJFEZ_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HGG0917082.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIATEFAKVLKAKQIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            7732..8175
                     /gene="rpsE"
                     /locus_tag="ACJFEZ_000953"
     CDS             7732..8175
                     /gene="rpsE"
                     /locus_tag="ACJFEZ_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HGG0917083.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            8180..8572
                     /gene="rplO"
                     /locus_tag="ACJFEZ_000954"
     CDS             8180..8572
                     /gene="rplO"
                     /locus_tag="ACJFEZ_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HGG0917084.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIAKPYVINVEKITAVKELNEITIESIKSVHKISKSV
                     TKIKLIGASAKDLASKIKDENISVTGSK"
     gene            8572..9837
                     /gene="secY"
                     /locus_tag="ACJFEZ_000955"
     CDS             8572..9837
                     /gene="secY"
                     /locus_tag="ACJFEZ_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HGG0917085.1"
                     /translation="MNKALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDGMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMIENLNMFIALCAISMLAGTMLLM
                     WIGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFVILALILIT
                     IGVIIYVELGERRIPISYSRKVVMQNQNKRIMNYIPIKINLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTANYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFNFGGTSVLI
                     VVQVALDTMRKIEAQIYMNKYQTLNAIGL"
     gene            complement(9899..11158)
                     /locus_tag="ACJFEZ_000956"
     CDS             complement(9899..11158)
                     /locus_tag="ACJFEZ_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917086.1"
                     /translation="MKKKSYKFHPNDTKLDKKMVEITEKSGFKIAVFSMAAMTMLGSV
                     VISSALPAINRHFEDILIQSGANMQTNFTLAHLDILVRLVLTLPAIFVVILSPFAGIL
                     MDKLGKLKFVFPAMIAWTLAGVSGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLIAMI
                     YLFEPRKFKFYNHTKIEEKTNYWKFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KFIGISMSISALCYGIFSLSYKYIMRFLSIKMIYIATLFIVGCSFLILFLIDDFIAVL
                     FALALLGMGGGIMLVNNTAYLFSICPENARARAYGILASCIFLGQFLSPIISQPIVRQ
                     LGLVDAFLIWAILNFIVCIVFLFLKQR"
BASE COUNT         4206 a         1588 c         2264 g         3190 t
ORIGIN      
        1 aaaaatttca tcaaattcct tgactttgaa aacaagattt tatatactct catttcaatt
       61 tttataaatt ggttagtttt taactaacga gttcttttta aaggaaatat tatggaaaga
      121 attaggctta agctaaaagc ttatgaccat cgagtactag acagaacagt tgcagcaatc
      181 gtagaagctg ttaaaagaac aggtgcggat atcagaggtc cgataccaat gcctactaaa
      241 atcaaacgct atacagtttt aaaatctcca cacattaaca aagattctcg tgagcagttt
      301 gaaataagaa ttcacgcgcg tatgctagat atagtagcag cgactccaga tacagttgat
      361 tctttaacta agcttgattt agcgccagaa gtaagcgttg aagtaagagc tatgggtaag
      421 taaggataag atatggaata tattgtagaa aaaattggaa tgagcagaac aattactaat
      481 ccaagtatcg ctgtaacttt actaagagtt gtaaatgcaa aagtatgtga agttgaaggc
      541 ggaaaggctt tagtagcata tccaaaaggt aaagcaagta ataaatgtgt cgcaggacaa
      601 caaaaaaaat acaatctttc tgcagaatac aatagatttg cgactttaga agtagcaaat
      661 actgaagcag gagatttaga tgaaactcca ttaaatgaag caaaaatttt aaaagtaagc
      721 tttaacacta aaggtagagg ttatagcggt gttatgaaga gacataactt tgcagggggt
      781 ccagcaagtc acggttctag atttcacaga cgccatggat ctattggtaa tagagaatgg
      841 ccaggtcgtg ttcaaccagg tatgaaaatg gcaggacact atggaaatac taaagtgacc
      901 gttaaaaacg aagttgtatc ttatgatgct gaaaataaaa ttttagtagt taaaggtgca
      961 gtaccaggtt ataatggtgc tatgggtaaa ataaggattg caaaatgagt aaagtagttg
     1021 ttttaaatga taaattagaa aaagcaggtg aacttgattt accttcaaaa tatgcggaag
     1081 taaatccaca caatctttac ttgtatgtaa aatcttacct tgcaagttta agagcaaata
     1141 cagctcatac taaaggtaga agtgatgtaa gtggtggtgg taaaaaacct tggagacaaa
     1201 aaggtcgtgg cggtgctaga gcgggttcaa caagaactaa cgtttgggta ggcggtgcgg
     1261 ttgcttttgg tccaacaaat gaaagaaact acttccaaaa agtaaataaa aaacaaaaaa
     1321 gattggcgct tgaaagagct ttagcagata aagcagctaa aggtgtgtta tttactgctg
     1381 attctttggc tattgaaagt ggtaaaacaa aagatgcaaa cgctgtgatt aaaaaacttg
     1441 gcgtcaaaga tgctttaatc gttaaagatt tactagatga aaaaacactt ttagcttaca
     1501 gaaatttagc aaattgctat gtagttgatg taactgaagt aaatgcttat ttagtatctg
     1561 tatttaatgc tgttattatg gaaaaatcag cgttagaatc tattacaaaa gagggataat
     1621 tatggcagat attactgata taaagactat actttacaca gaaaaaagtt tgaatttgca
     1681 agagcaaggt gtcgtagtta ttcaaacttc gccaaaaatg actaaaacag gcttaaaagc
     1741 ggttttaaaa gagtattttg gtgtaactcc aaaaagcatc aattctttaa gaatggatgg
     1801 aaaagttaag cgttttagag gtcgtttagg tcaaagaaac gattataaaa aattctatgt
     1861 taagctacct gaaggtgtta gcttagaaag tatggaggct taagatggca attaaaactt
     1921 ataaaccata tactccaagt agaagatata ttacaggttt aagctctgaa gatattacag
     1981 caaaaccaag tgtacgctct ttacttgtga aacttccagc acacgcagga cgcaatagct
     2041 acggaagaat tacaagtcgt cataaagaag caggagcgaa aaaactttac agaattatcg
     2101 attttaaacg tcgcaaattt ggtatagaag gaaaagtaga agcgatcgaa tacgatccat
     2161 atagaaattg tagaattgct ttgatttctt ataaagatgg tgaaaaaaga tatattcttc
     2221 aaccacgcgg actcagtgtt ggtgatatcg ttgcagctgc tgaaagtgga cttgatataa
     2281 aaccaggtaa tgcaatgaaa cttaaaaaca ttcctgtggg tactattgtt cataatgttg
     2341 agttaaagcc aggcaaaggt ggtcaaatga tccgctcagc aggagcttat gcgcaactta
     2401 tgggtaaaga agaaaaatat gttatcttaa gacttgcaag cggtgaaatg agacaagttc
     2461 tagctgaatg tatggcaagt ataggcgaag taggtaacga agaatgggca aatgtgacta
     2521 tcggtaaagc aggtagaaat cgccatagag gtatccgccc acaaactcgt ggttcagcta
     2581 tgaacccagt agatcacccg cacggtgggg gtgaaggtaa gaaaaattca ggccgtcatc
     2641 cagtaactcc atggggtaaa ccaaccaaag gtgcgaaaac tcgtcgtaaa aaagctagcg
     2701 ataagctaat aatttcaaga agaaaaggaa agtaagatgg ctagatcact aaaaaaaggt
     2761 ccttttgttg atgatcatgt aatgaaaaaa gtcatcgctg ctaaaaaggc taatgataat
     2821 aaacctatta aaacttggtc tagaagaagt actatcattc ctgatatgat aggtttaact
     2881 ttcaatgttc ataatggcaa aagttttatt cccgtttata tcactgaaaa tcatatcggt
     2941 tataaacttg gcgaatttgc tccaacacgc acatttaaag gccataaagg ttctgtgcaa
     3001 aagaaaattg gtaagtaagg gataagatat gagtaaagca ttaattaaat tcataagatt
     3061 atctccaact aaagcaagat tgattgctag agaagttcag gggatgaatg cagaattagc
     3121 tatggctagt ttaaaattta tgccaaacaa gggtgccaaa tatatcgcaa atgcaatttc
     3181 aagtgcagta gcaaacggcg gttttgaagc gaacgaagta gtggtaaaaa gttgtcgtgt
     3241 agatgctggt gctgtattaa aaagatttag accacgtgct agaggaagtg caagccgtat
     3301 tagaaaacct acttcacata tcttagtaga agtagcgaaa gcggaagtta aaactgaagc
     3361 aaaaaaagca gtagctaaaa aaactcctgt taaaaaaaca agtactaaaa aagtaacggc
     3421 agaaaaggaa agctaatggg acaaaaagta aatccaatcg gtctaagact aggaattaat
     3481 agaaactggg aatcaagatg gtttccaact aaggcaaatt tagtggaaaa tatcggtgaa
     3541 gattacaaaa tcagagcttt cttaaaaaga aaactttatt atgcgggaat cagccaaatt
     3601 ttagtagaaa gaactgctaa aaagcttcgc gtaactgttg tagctgcaag accaggtatt
     3661 atcattggta aaaaaggtag cgatgttgat aatttaagaa aagaattgca agatttaatc
     3721 ggtaaagatg taaatatcaa catcaaagaa gaaagaaaag cgggtgcttc agctcaactt
     3781 gctgctgaaa gcgttgcaac tcaacttgaa aaaagaatcg cttttagaag agcaatgaaa
     3841 aaagtaattc aaggcgcaca aaaagcaggt gctaaaggga ttaaagtttc agtttctggt
     3901 cgtttaggcg gtgctgaaat ggcaagaact gaatggtatc ttgaaggtcg tgtgccactt
     3961 catactttaa gagcaaaaat cgattacggt tttgcagaag ctagaactac ttatggaaac
     4021 ataggtgtta aagtttggat ctttaaaggt gaagtattgc aaaaaggctt acaaactgaa
     4081 aaaacagaag aaagtgctcc agctaaaaag caaagacgca caagaaggag taaataatca
     4141 tgttaatgcc aaaaagaact aaatatcgca aaatgatgaa agggcgtaac agaggttatg
     4201 ctaatcgtgg aactgaattt acttttggtg aatttgcatt aaaagcaact gaagcaggac
     4261 gcattaattc acgccaaatt gaagcagcgc gtatcgcttt aactcgtttt gttaaaagac
     4321 aaggaaaaac ttggattaga gttttcccag ataagccttt gacaaaaaaa cctttagaaa
     4381 ctcgtatggg taaaggtaaa ggtgctgttg aggaatgggt aatgaatatc aagccaggtc
     4441 gtatcattta tgaaatggca ggagtaagcg aagaaatggc aagagaagca ttgactttag
     4501 ctatgcataa acttccattt aaaactaagt ttgttacaag agagagccaa aatgaaatat
     4561 actgagatta aagataaaac agcagctgag cttgcaacaa tgctaaaaga aaaaaaggtg
     4621 cttttattca ctttaaaaca aaagctaaaa acaatgcaac ttactaatcc aaaagagatt
     4681 agcgaagtta gaaaagacat tgctagaatc aatacagcaa ttaacgcttt aaaataagga
     4741 taaaaaatgg catttaaaag agaaatacaa ggcgttgttg tgaaaatcgc aggtgagaaa
     4801 acagcgagta ttttggttga aagaaaagtg gttcatccaa gatatagaaa aattgttaaa
     4861 cgctttaaaa aatatctaat tcatgatgag agaaatgaag ttaaagtggg tgatactgtt
     4921 gttgcagtag aatgcagacc actttcaaaa agaaaatcat ttcgcttaaa atctgtatta
     4981 gctacaggag ttgagtaatg attcaaagtt ttacaagact tgcagttgct gacaatagcg
     5041 gtgcaaaaga attaatgtgt attaaagttt taggtggtag taaaagaaga tatgctactg
     5101 taggcgatgt aattgttgca tctgtaaaaa aagctttacc aaatggtaag gtaaaaaaag
     5161 gtcaagtagt aaaagcagtt atcgttagaa ctaaaaaaga aattcataga gataatggtt
     5221 ctttgattcg ttttgatgaa aatgctgcag ttattcttga taacaaaaga gaacctatcg
     5281 gaactcgtat ctttgggcca gtgggtagag aagttagata tggtggcttt atgaaaattg
     5341 tttcactagc accggaggta ttataatggc ggttaaatta aaaatcaaaa aaggtgatag
     5401 cgttaaagtt atcacaggtg atgacaaagg taagacaggt aaagtgttag cagtatatcc
     5461 aaaaacactt aaagtagttg ttgagggatg taagattgct aaaaaagcta taaaacctag
     5521 cgagaaaaac ccaaatggtg gttttatcaa taaagaaatg ccaatggata tttccaatgt
     5581 ggcaaaagtt caggagtaag cgatgatgag attgaaagaa aaatacgatc aaagcatcaa
     5641 acctgctttg gtaaaagaat ttgatattaa aaatcctatg cttatccctg cgatagaaaa
     5701 aatcgttatt agcgtaggtg cgggtgagct tgctaaagat caaaaagtat tgcaaaatgt
     5761 tgcagatact atttctttga tagcaggaca aaaggctgtg attactaaag ctaaaaaatc
     5821 agttgcagga tttaaagtgc gtgaaggttt tcctgtaggt gtaatggtaa ctttaagaaa
     5881 agaaaatatg tttgcttttc ttgataaatt aatttctatt gctttaccaa gagtgaaaga
     5941 ctttagaggt ttaagtagag atggttttga tggaagagga aattacaatt tcggtcttga
     6001 tgagcagttg atgttcccag aagttgagta tgataaaatt ttaagaactc atggtatgaa
     6061 catttctata gttacaacag cacaaaacga taaagaggca caaaagttgt tagaacttat
     6121 cggtgtgcca tttacaaaag gaaagtaaga tggctaaaaa atcaatgatt gcaaaagcgg
     6181 cacgcaaacc taaattcaaa gtaagaggct atacaagatg ccaaatttgt gggcgtccgc
     6241 attcggttta tagagatttt ggaatttgta gagtttgcct aagaaaaatg ggtaatgaag
     6301 gcttgattcc aggtcttaaa aaagcaagct ggtaaggaaa taaaatgata aatgatataa
     6361 tttcagattc actaacaaga attcgcaatg ccggaatgag aaagcttgaa acaaccaagc
     6421 ttttacattc taaagttgta gaagctttag ttggaatttt ccaagctaaa gggtatattg
     6481 aaagttttaa tgttatcgaa gaagataaaa agaaatttat caatgtagtt ttaaaatacg
     6541 atgaaaaagg taaaagcgtt attaacgaac ttaaaagagt ttctaaacca ggtcgtcgtg
     6601 tttataaggg taaagaagaa attaaaagat ttaaaaacgg ttacggtact atcgtagtta
     6661 gcacaagtcg tggcgtttta gcaaatgatg aagcttataa agcaggtgtt ggcggcgaaa
     6721 ttttatgtac catttggtaa aaatctgctt tttatggcat tgggtatcca ttcttttaaa
     6781 aaagtagaaa tatcctagac aaataaaaag gaaaaatatg tctcgtatag gtaaacaacc
     6841 aatcgctatc cctagtggag tagaggttaa actagaagga aatttgctta aatttaaaaa
     6901 aggaaattta gcaaaagagc ttgatacaaa agcaaatgta aatgttgaga ttaaagataa
     6961 taacattctt ttctctccta aaggtgaaga tagacaaagt agagcatatt ggggaactta
     7021 tagagcttta gcttacaata tcgttgtagg cttaactcaa ggtttttcaa aaactcttga
     7081 aatcaacgga gtgggttata aagctgcttt aaaaggcaaa gttttagaat taagccttgg
     7141 tttttcacat cctatcaact atgatattcc agaaggaatt gaaatcactg tggataaaaa
     7201 caatgttatc attaaaggaa gcgataaaca agtagtagga caagttgctg ctcaaattcg
     7261 tgaatttaga ccacctgagc catataaagg aaaaggcgtt aagtattctg atgaacgcat
     7321 tatccgcaaa gctggtaaga catctaaaaa gtaaggatag gcaatgagag caaatgtact
     7381 aaaaagaaaa ctaactttaa gaattaaaag aaaaaaaaga attagagcaa aaatttcagg
     7441 atgtgaaaac ttcccaagaa tttctgtttt taaatcaaat agaactcttt atatccaagc
     7501 gattgatgat gttaaagctg taactttagc agcagtagat ggacgcaaac ttggcgttaa
     7561 agcaaacaaa gaaggtgcta aaaaaatcgc tactgaattt gctaaagttt taaaagctaa
     7621 gcaaatagaa caagctgtgt ttgatagaaa tggttatgta tatcacggag taattgcagc
     7681 attagctgaa tctttaagag aaaatggtat taggctataa ggggtaaatc gatggaaaaa
     7741 tataatagag aagaatttga agaagtaatc gtcgatatcg gcagagttac taaggttgtt
     7801 aaaggtggta gaagatttag atttactgct ttagttattg ttggaaaccg caaaggttta
     7861 gtaggtgttg gttatggcaa ggctaaagaa gttcctgatg ctattcgcaa agcagttgat
     7921 gatgcattta aaaatatcgt tgaagtaaaa actaaaggat caactattgc tcacgatgtt
     7981 gaagtaaaat acaatgcaag tagaatttta cttaaaccag ctagcgaagg tacgggagtt
     8041 atcgcgggtg gttctactcg tcctatcgta gagcttgcgg gtattaaaga tatcttaact
     8101 aagtctttag gttcaaataa ctcagctaac gtggttcgtg ctacaatcaa agctttaaca
     8161 atgctaaaag gataagaaga tgaatttgac aaaagcagcg ggatcaacgc ataaaaccaa
     8221 aagaataggc cgtggccaag gaagtggaat gggtaaaacc gccactaaag ggggcaaagg
     8281 tcaaaccgct agaaagggtt ataatgaaaa aagaggtttt gaaggaggtc agcaacctct
     8341 tcaaagaaga ttaccaaaag ttggttttac ttctaaaatc gcaaaacctt atgtgattaa
     8401 tgttgaaaaa atcacagccg taaaagagct taatgaaatt acaattgaaa gcatcaaaag
     8461 cgttcataaa atttcaaagt ctgttactaa aattaaatta atcggtgcaa gtgcaaaaga
     8521 cttagcatca aaaattaaag acgagaatat cagcgtcacc ggatcaaaat aatgaataag
     8581 gcattgacga ataagatttt aatcacctta gctttcttgt ttgcttatag ggttctggct
     8641 tatgtgccag ttcctggcgt caatgctgat gtgattgcgg aattttttaa caataatcaa
     8701 aacaatgctt tgggtttatt taatgttttt agtggtgggg cagcagaacg cttttctatc
     8761 atttctttag gtattatgcc ttatattact gcttcgatta tcatggagct tttagcagct
     8821 actttcccaa atatcggtaa aatgaaaaaa gaacgcgatg gtatgcaaaa atatatgcaa
     8881 attatccgtt atgcaactat agtaatcact ttagttcaaa gtatcggtgt ggctatagga
     8941 cttcaaagtt tacatggaag aggtggagca ggcgctataa tgatagaaaa tttaaatatg
     9001 tttattgcgc tttgtgcaat ttctatgctc gcaggaacta tgcttttgat gtggataggt
     9061 gaacaaatca cacaaagagg tataggaaat ggtatttctt tgattatttt tgcaggtatt
     9121 gtttcaggaa ttccaagagc tatttcgggt acagtaggac agataaattc aggcgaaatg
     9181 aatttcttaa ccgcttttgt tatccttgct ttgattttaa tcactattgg cgtgattata
     9241 tatgtagagc ttggagaaag aagaattcct atttcttact cgcgtaaagt agtaatgcaa
     9301 aatcaaaata agcgtattat gaactatatt ccaattaaaa tcaatttaag tggagttatt
     9361 ccgccgattt ttgctagcgc tattttaatg tttcctacga ctattttgca aacaagtaca
     9421 aatccgtatt tgcaagctat caatgacttt ttgaatccaa atggttattt atttcatgtt
     9481 ttgactttct tgtttgtaat tttctttgcg tatttttatg cttctatagt atttaatgct
     9541 aaggatatag cggaaaatct taaaaaacaa gggggtttta tccctggaat tcgtccaggc
     9601 gaagggacag caaattatct taatgaagta gcttctcgtc ttactttatc gggttctatt
     9661 tatttaggac ttgtagcaac cttgccttgg gttttggtta aattcatggg tgtacctttt
     9721 aattttggag gtacttctgt attgattgta gttcaagttg cattggatac aatgagaaaa
     9781 attgaagctc aaatttatat gaataaatac caaaccttaa atgcaatagg tttataaact
     9841 tttaacacaa ggaggagata tctctttgtg ttttatactt tctataaaaa gcgatttttc
     9901 atctttgttt taaaaataaa aatacaatac aaactataaa atttaaaata gcccatatta
     9961 aaaacgcatc aacaagtccc aattgtctta ctataggctg agagataatc gggcttaaga
    10021 attgccctaa aaatatacaa ctagctaaaa ttccataagc tctagctcgt gcattttcag
    10081 gacagattga aaaaagataa gcagtgttat ttacaagcat gatacctcca cccattccaa
    10141 gcaaggctaa agcaaataaa acagcgataa aatcatcgat caaaaagagt atcaaaaaag
    10201 aacagcccac aatgaataaa gtagcaatat aaatcatttt aatacttaaa aaacgcatga
    10261 tatatttgta acttagagaa aaaataccat aacaaagtgc agaaattgac attgaaatcc
    10321 ctataaattt aggatctaag cctagatgct cttctatata ataaggaagt tgtgtagggg
    10381 atatataata aaccaccatg ataaaaaatc ctataaaata aataggaaaa aatttccagt
    10441 aattagtttt ttcttctatc tttgtatgat tgtaaaattt aaattttctt ggctcaaaaa
    10501 gataaatcat ggctatgagg gtgattaaaa ttccaagccc ataaaccaaa aaaggataac
    10561 gccaagaata actcgaaaca aagcccgcta tagagataaa cactgcacca cctaccgcac
    10621 aaaaaaatcc ttgaagactt aaagcatttt ctctacggtt aaagccacca cgactataat
    10681 aatctcccag caaagccgaa gcacccgtca ttataaaagc cgttgccata ccaaaaatag
    10741 ctcttgaagt cagtatagca taaatatcat ttaagaaaaa gccacttact ccagcaagtg
    10801 tccaagcaat cattgcagga aaaacaaatt ttaatttacc cagtttatcc attaaaattc
    10861 ctgcaaaagg agataaaatc acaacgaaaa tagcaggtag ggttaatact aaacgcacta
    10921 aaatatcaag atgtgctagg gtaaaatttg tttgcatatt tgcacctgat tggattaaaa
    10981 tatcttcaaa atgtctattg attgcaggca gtgctgatga gattaccacg cttcctagca
    11041 tagtcattgc cgccatggaa aatactgcga ttttaaagcc tgatttttct gtgatctcaa
    11101 ccattttttt atctaatttt gtatcattgg ggtgaaattt ataagatttt ttcttcatat
    11161 ttgaaccttt ttagttttat tatactcaaa aaattttctt ttgtatttaa aattacttct
    11221 atttgtaatt tatactcctg tttttcat
//
LOCUS       DBBXRO010000048        11049 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.048, whole genome shotgun sequence.
ACCESSION   DBBXRO010000048 DBBXRO010000000
VERSION     DBBXRO010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11049
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.048"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            47..823
                     /gene="surE"
                     /locus_tag="ACJFEZ_000957"
     CDS             47..823
                     /gene="surE"
                     /locus_tag="ACJFEZ_000957"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HGG0917087.1"
                     /translation="MKEILITNDDGFESEGLKKLIKMLKKEFKAKITIVAPATEKSAC
                     SHSITLTKPLRFIKVGKRFYKLDDGTPADCVYLALHALYKTRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDFKNALKITKKIVQNIFDKGFP
                     LGKKEFLNINFPAKSNIKGIKICKAGKRVYNFEAHSNINPRGVEYYWLAAANLDFEDE
                     KDSDIALLKKGYVTITPIMLDLSAYDKMKKVKKWLKANNE"
     gene            813..1472
                     /locus_tag="ACJFEZ_000958"
     CDS             813..1472
                     /locus_tag="ACJFEZ_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HGG0917088.1"
                     /translation="MMNDRFTRIKWLVSEENFNKISQTKVLVCGLGGVGGMCVDALYR
                     SGFQKLTLIDADKFEITNQNRQIHSENLGEEKAKVFARIYNAKGIVSKIDNEFLANFD
                     LSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            1456..1915
                     /locus_tag="ACJFEZ_000959"
                     /pseudo
     CDS             1456..1915
                     /locus_tag="ACJFEZ_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(2026..2406)
                     /gene="panD"
                     /locus_tag="ACJFEZ_000960"
     CDS             complement(2026..2406)
                     /gene="panD"
                     /locus_tag="ACJFEZ_000960"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HGG0917089.1"
                     /translation="MNITLLKSKIHRASVTEARLDYVGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEVKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(2403..3251)
                     /gene="panC"
                     /locus_tag="ACJFEZ_000961"
     CDS             complement(2403..3251)
                     /gene="panC"
                     /locus_tag="ACJFEZ_000961"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HGG0917090.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3262..4086)
                     /gene="panB"
                     /locus_tag="ACJFEZ_000962"
     CDS             complement(3262..4086)
                     /gene="panB"
                     /locus_tag="ACJFEZ_000962"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HGG0917091.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSSIFPSQEHSFDYLDDELLDKLY"
     gene            complement(4441..4818)
                     /locus_tag="ACJFEZ_000963"
     CDS             complement(4441..4818)
                     /locus_tag="ACJFEZ_000963"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917092.1"
                     /translation="MKFYNVITMVIFILFFAGCSVSGMITADHNGKMYWVPADCPRYK
                     YFYNEPDKLICTDSNGIETGRILYPADEQQIANYRYEQQRQDEISQRNMEQLRQNTEN
                     LKEINRHFYENFMPKRHDVYIHY"
     gene            4909..5160
                     /locus_tag="ACJFEZ_000964"
     CDS             4909..5160
                     /locus_tag="ACJFEZ_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HGG0917093.1"
                     /translation="MKDDFSNSSEKEILNFYKKVSSNIRKFREQKGISQLELALDIGI
                     KSVAFYSNCECNRYGKHFNLEHLYKISKSLEIPLKDLLE"
     gene            complement(5255..6139)
                     /locus_tag="ACJFEZ_000965"
     CDS             complement(5255..6139)
                     /locus_tag="ACJFEZ_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HGG0917094.1"
                     /translation="MIKIDIKLPINTAKGKKQLELNTYLKANEITAIFGESGAGKTTL
                     LKIIAGIIKPEFGRIEVEDELWLDTQKNINLSIQKRKIGFVFQDYALFPNMSVKENIS
                     YAATSKQKAEELLSLMNLENLAKIYPKNLSGGQAQRVALARALAREPQILLLDEPLSA
                     LDFKMRSFLQDELVKILQHFKITTLLVSHDLAEIYKLSHRILELSDGKIIKDARTNEF
                     FTSSNLSAKLRLSATLLEMKKSDILVIFTLLLNQDIVKITLSEEEFLKSYKDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(6149..6817)
                     /gene="modB"
                     /locus_tag="ACJFEZ_000966"
     CDS             complement(6149..6817)
                     /gene="modB"
                     /locus_tag="ACJFEZ_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HGG0917095.1"
                     /translation="MDNDFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVKFPFKSL
                     VQTFVALPLVLPPSVLGFYLLISFSQNSFLGQFLKEYFNLSLVFSFEGLVFASLIFSL
                     PFMVNPLQSAFSSINQNLLDASYTLGKGKIYTLFRVILPNSKVGIFSACAMSFAHTIG
                     EFGVVMMIGGHKKGETLVASIAIYDELEVLNYTLAHQYAFTLFAISFTILLSLYFVNK
                     KIAL"
     gene            complement(6810..7211)
                     /locus_tag="ACJFEZ_000967"
     CDS             complement(6810..7211)
                     /locus_tag="ACJFEZ_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HGG0917096.1"
                     /translation="MNILNGKIIELLNEGEIVIVKISIKEQIFKVLMLDLHSLQDLKI
                     GTKIQVLFKEHELGLALPHSILSVENSFLARIKSIKKGKILYHIFFDFEGDEISSIIT
                     KEKALELKLEEGQEWLCFVKENDIILKAVYG"
     gene            complement(7208..7957)
                     /gene="modA"
                     /locus_tag="ACJFEZ_000968"
     CDS             complement(7208..7957)
                     /gene="modA"
                     /locus_tag="ACJFEZ_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HGG0917097.1"
                     /translation="MKKLVLCFIVLFLSLNLNAQNLSVFVASSASKAMEEVKNEFLKS
                     HPNDNIDLVFGASGKYYQLLKQGREFDLFFSADTKYAQAIYEDQNALDKPKVYVLGIL
                     ALYSLDESLLEGGIEKLKDKANKIHHLSLANPKVAPYGVAAKEVLENLNLDKLFEDKI
                     VLGENISVPVLHVDSNNADLGIVAYSLVSSINHPKGKAILIDQKYFTPLKQSYVITKY
                     AKDKKLAFEFSDFISSQKAKEIFKKYGFDTP"
     gene            complement(8011..8697)
                     /gene="bioC"
                     /locus_tag="ACJFEZ_000969"
     CDS             complement(8011..8697)
                     /gene="bioC"
                     /locus_tag="ACJFEZ_000969"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010340 - carboxyl-O-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HGG0917098.1"
                     /translation="MNFLKAKDYQKHAKVQDLMGLKLCEILKNLEISHFKKVFEFGCG
                     RGEFSDKLSKIITFDEYLKNDILDYPDNLNVEIFDMNTLATQNLSKQKFDLITSNASL
                     QWLDLKQVLPTLANMLNKKGILLLSTFGEMNLKEIKQSTSLGLKYFSTKELEQIFKPY
                     FSDIKITEEIVNLEFQNALEVFKHLKLSGVNSLGFYRLNKQFLKEFEEKFQNKLTYHP
                     IFILCKKDTK"
     gene            complement(8694..9305)
                     /locus_tag="ACJFEZ_000970"
     CDS             complement(8694..9305)
                     /locus_tag="ACJFEZ_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HGG0917099.1"
                     /translation="MKISNLIQNENSQELILVFGGFASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLNSFSKITLIAFSMGVCVASRVLKNIEFSQKIAINGTPFGIDKLKGIHPA
                     IFAKQIKKFDLTAFKKSLFKERENEAKDFIFKDEKDLKTELEKLFEFALKERNESFIW
                     DKIYSSNHDEIFPQNALKNTFSKLIFLDEPHFAFFHFKTWDEI"
     gene            complement(9302..10444)
                     /locus_tag="ACJFEZ_000971"
     CDS             complement(9302..10444)
                     /locus_tag="ACJFEZ_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HGG0917100.1"
                     /translation="MQIKQILDKLKEQNNLRKLTSLKHEGNFVFKEGKKLLNLAGNDY
                     LNLSFCKSLKDEFLDNIKEQDLFFSSSSSRSLSGNFTIYEELESFLKSKFKEKEILHF
                     NSGYHLNISCIAALASIPNTLFLADKFIHASMIDGLKLGGAKFFRFHHNDMNHLENLI
                     QKHYDHYENIIILSEALFSMDGDFSDFNTLIALKEKYPKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACMICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKSHQILGDAYIISLILGENQKAIEL
                     AKKLEINGIFAPAIKEPTVPKNTARIRFSLHAGLSKEDLKKVVELL"
     gene            complement(10459..>11049)
                     /locus_tag="ACJFEZ_000972"
     CDS             complement(10459..>11049)
                     /locus_tag="ACJFEZ_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0917101.1"
                     /translation="LGFIFLNFACSQEDLIEKGENAYKNKDYTNAIKYFQQACDLNNG
                     NGCNELGTMYTLVKKNNFKAMESYQKACDLNYKQGCSNLGFMYMLGMRTKDDKFKAIE
                     LYEKACNLNEGSSGGVVGAMYANGTYVEKNDFKAVKFLKIACDMDYANSCVNLGGMYE
                     NGYGVRKDISKALKFYGKACDLKYDTGCKNYARLKR"
BASE COUNT         3751 a         1727 c         1609 g         3962 t
ORIGIN      
        1 caaaaatatg ctacaatcca aattttatct tttgcaagga agagcaatga aagaaattct
       61 tattaccaat gatgatggtt ttgaaagtga gggacttaaa aaactcatta aaatgttaaa
      121 aaaagaattt aaagcaaaaa ttaccatagt tgcgcctgct actgaaaaat cagcttgttc
      181 acattctata acccttacaa aacccttgcg ttttatcaaa gtaggaaaaa gattttacaa
      241 gcttgatgat ggaacccctg cagattgtgt ttatcttgct cttcatgcgc tttataaaac
      301 gcgtttgcct gatcttgtga taagtgggat taataaaggt gcaaatgtgg gtgaagatat
      361 cacatattca ggtacttgtg cgggtgctat ggaagcagtt ttacaaggaa ttccagccat
      421 agctctttcg caattttaca aaaaaagtga aaaagagctt gattttaaaa atgctttaaa
      481 aattactaaa aaaatcgttc aaaatatttt tgataaaggc tttcctttag gaaaaaaaga
      541 atttttaaac attaattttc cagcaaaatc caatataaaa ggcattaaaa tttgtaaagc
      601 aggtaagcga gtgtataatt ttgaagcgca ttcaaatatc aatccacgcg gagtggagta
      661 ttattggcta gcagcagcaa atttggattt tgaagatgag aaagatagcg atatagcttt
      721 attgaaaaag ggttatgtga ctataactcc tataatgctt gatttaagtg cttatgacaa
      781 aatgaaaaaa gttaaaaaat ggttaaaggc aaataatgaa tgatagattt acgcgtataa
      841 aatggctagt aagcgaggaa aacttcaata aaatttcaca aaccaaggtg ctcgtatgcg
      901 gacttggtgg agtaggtggg atgtgtgtag acgcacttta tcgtagcggt tttcaaaaac
      961 ttactttaat cgatgcggat aaatttgaaa tcaccaatca aaaccgccaa attcatagtg
     1021 aaaatttggg cgaagaaaaa gctaaggttt ttgctagaat ttacaatgct aagggtatag
     1081 taagtaaaat agataatgaa tttttagcga attttgattt aagtgaattt gatttaatca
     1141 tcgatgcaat tgatgatatt cctgcaaaag tagcgcttgc aaatttgatc gattttaagc
     1201 gtcaaatttt tatctcttct acgggtgggg ctagaaagct tgatcctacg cgtataaaaa
     1261 ctacaagtat atttaaaacc cacggagatg ctttagcgaa aaaattccgt tatgaactta
     1321 gaaaatcagg ctttaaagga aattttgatg tggtattttc agatgaggaa gcgcattgta
     1381 aagatcttgg atcttttatg ggtgtgactg catcttttgg tttagcccta gccagcttgg
     1441 cattaagaaa agttcttgct aagaaaagct gatattaaag atttaaatgc ttgtttgtcg
     1501 ctttttgagc aaagcgtaaa aacactttgt gctaaggatt atacaaaaga tcaaatttgt
     1561 gcttggatta aaattgatag acaacaatgg gaagaaaaat ttaaatatga tgagatcttt
     1621 gtctatgaaa aaagaggaaa aatcgcaagt tttataagtg ttaaacaaga gcagaaattg
     1681 cttgatttgc tttttactca tcctgatttt gttagacaag gtttagcaca aaatttactt
     1741 gattttattt taaaaactta tttgcataat gaaatttaca ctttcgcatc cttaagtgct
     1801 aaagattttt tcttaaaaaa tggttttgaa cttataaggg aaaacaaggt tatcaaagag
     1861 ggacaaaatt taaaaaaaaa ttttaatgaa aaaagatgtg gtttataaaa actagaagtt
     1921 aagataagca aaaataatgg attaaaagat ataaaaatca ttttttactt atcttagata
     1981 aatgaattta tctaagatag aaaaaattac aaaaatagct agatgttaga aaatagctcc
     2041 gtgtttttca taatttgtta tttttgtagc agtgttattt tcatccacaa aaacaacttt
     2101 tggtttaaat gtttttactt cttcttcatt aaaatcagca taagacatga tgatcacctt
     2161 atctcccact tctgcaagac gagccgcagc accatttaag catacaactc cttcttcttg
     2221 cgtggctatg gtataggttt caaatctagc gccattattg acattgacta cttggacttt
     2281 ttcgtattct aaaattccac tcgcttgcaa taatttttca tctatactta tacttcctac
     2341 ataatcaagc ctagcttctg ttacgcttgc gcgatgtatt tttgatttga gtaaagtgat
     2401 attcatttta atccttgtac taaaaaatta tcaatgagtc ttgtttttcc aacaaaagca
     2461 gccaccgctc ctaaaacatt atcagtgata ttttcgatat tttccatggt gttaaaatcg
     2521 actaattcta tataatcgat tttgattagt ttttcttttt ctaaaatatc tttcatagct
     2581 tggatgatct tagaagtatt tttttctccc tctcggacta atttttcagc caaaaaaatg
     2641 ctttgagata tagctagtga cgcttttctt tcttctttgc taagatatac atttctagag
     2701 cttttagcta agccatcttc ttctctaatg ataggacaaa tttgaatttt taaatcaaaa
     2761 tttaaatcat caaccatatg cctaacgact acgcattgct gcgcgtcttt ttgccccata
     2821 tagactatat cagggtttag gatattaaaa aatttagtta aaaccgtgca aacgcctcta
     2881 aaatgccccg gtcttttagc cccacaaagt ttatcagtga tcgtattcat atctacatag
     2941 gtgctaaaat tcttaagata catttgagtt gcatcgggga taaaaaccat atcaacgcca
     3001 ttatcttgac acattttaat gtcgcgttct aaatctcttg gataactaga aaaatcttca
     3061 ttaggcccaa attgcatagg atttacaaag atacttacta taaccttatc ttgtgttttg
     3121 gcatgtttga ctaaacttaa atgtccatcg tgtaaaaaac ccatggttgg aacatagcct
     3181 atactaagtt gatgtgattt ccaatctttt acaatttgtt ttgcttcttt gacagaagta
     3241 atgacttgca tatttgtatc cttagtataa tttatctaat aattcatcat ctaaataatc
     3301 aaagctgtgc tcttgggaag gaaaaatact gcttttaact tcatctctat atttttcaac
     3361 tcctacttga ggatcaattt tatcaaaatg ctttacaaat tttgctttaa aatctttatt
     3421 taaacccaaa agatcgtgat aaactaaaac ttgtccatcg cagtatttgc ctgaacctat
     3481 gccgattgtt ggaatttcta aaatagagct tattttttgt gctagtttta caggcacaca
     3541 ttctaaaacc aacatacaag cacccgcatc ttgcacagct tttgcatcat ctataatttt
     3601 ttgggccgat tgtaaatctt taccttgaac cctatagcca cctagcatat ttacagcttg
     3661 tggggttaaa cctaggtgag caacgacggg tattcctgat tgggaaatca atttaatctt
     3721 gcttgcgatt tctatacccc cttccacttt taccccattt gcgtggcttt ctttgataaa
     3781 tcttgaggca tttaagatag cgtcacgatc tgaactttga taagacataa aaggcatatc
     3841 agcaagtacg aaagactttt tagctccgcg agaaacagct ttggtaaaaa tcaacatttc
     3901 atccatagta acacttaaag tatcttgcat accaagtacc gtcatggcta atgaatctcc
     3961 aaccaatata atatctatat cgctattgtc taaaattctt gcactatgat aatcatacgc
     4021 acttaccatg gttatttttt catttttggc ctttttttcc aaaaaactaa tcatactttt
     4081 tctcattttg catacctcaa tttttagcta taaaataata agcaaaaaac tagcatataa
     4141 tttttcataa atagtaaatg aatgataaag taagttatat ttaatcgatg gattgcttta
     4201 atggttacaa ttttggtttt tttaaattta agtactttag tgtaatacta gataatgctt
     4261 agtaggaatt ttcgtaggat ttttagtgct gtaaattatg aaattttact caaatttgat
     4321 cttttatgat ttgatataag cattatggag atattataaa attaaatacc cttagaaaat
     4381 atattcacaa gagtatttaa gaaataaata caattaacta atttatgctt aaatataata
     4441 tcagtaatga atatatacat cgtgtctttt gggcataaaa ttttcataaa aatgcctatt
     4501 tatttcttta agattttctg tgttttggcg aagttgttcc atgtttcttt gagatatctc
     4561 atcttgcctt tgctgttcgt atctataatt agctatttgt tgttcatctg cagggtaaag
     4621 aattcttcca gtttctattc cattgctatc tgtacatatc aatttatcag gttcattata
     4681 aaaatattta tatctaggac aatctgccgg cacccaatac atttttccat tatgatccgc
     4741 agttatcata ccactaacag agcatccagc aaaaaataaa ataaaaatta ccatcgtaat
     4801 gacattataa aatttcattt tttctccttt aatttatcct ataggatatt ttttaaaaaa
     4861 ttatatcttt gtaaagttta atttcatatt aatcctatag gataaaaaat gaaagatgac
     4921 tttagtaatt ctagtgaaaa agagattttg aatttttata aaaaagtatc gtcaaatata
     4981 aggaaattta gagaacaaaa agggatttct cagctcgagt tagctctaga tataggtata
     5041 aaatccgttg cgttttattc aaattgtgag tgtaatagat acggtaagca ttttaatttg
     5101 gagcacttat ataaaatttc taaaagccta gaaattccac ttaaagattt attagagtga
     5161 ttgttttatt aatataaata cccataaaga aaaaatagca atataaaata aattgttaag
     5221 tttttaaggt tttagtaact tttcaattta ttcactattt atcaagtttt cctacgatga
     5281 tagggttaaa ggcttttatg gatagcaaaa gcgtatcgcc gatttttaca tctttataag
     5341 attttaaaaa ttcctcttcg ctaagtgtga ttttaacgat atcttgattt aaaagcaaag
     5401 taaaaataac taaaatatca ctttttttca tctcaagcaa agtcgcgctc aagcgcaatt
     5461 tcgcacttaa atttgatgag gtaaaaaatt catttgttct cgcatctttg atgatttttc
     5521 catcactaag ctctaaaatt ctatggctta atttgtaaat ttcagccaaa tcatgactaa
     5581 ctaataaagt cgtgatttta aaatgttgta aaattttcac aagttcatct tgtaaaaaag
     5641 atcgcatttt aaagtccaat gcactcaaag gttcatctaa aagtaaaatt tgtggctctc
     5701 ttgccaaagc tcttgctaaa gccactcttt gtgcttgtcc accacttaaa tttttgggat
     5761 aaattttggc taaattttct aaattcatta agcttaaaag ctcttctgct ttttgttttg
     5821 aagtcgcagc ataagaaatg ttttctttta cgctcatatt tggaaaaaga gcgtaatctt
     5881 gaaaaacaaa gccgattttt cttttttgta tagataaatt gatatttttt tgggtatcaa
     5941 gccagagttc atcttctact tctatgcgtc caaattcagg ttttataatt cctgcaatga
     6001 ttttaagtag agttgttttt cccgcaccgc tttccccaaa aatagcagtg atttcatttg
     6061 cttttaaata agtgtttaat tctagttgct tcttgccttt tgctgtgttg atgggaagtt
     6121 ttatatcgat ttttatcata aaagtggcct ataaagcgat ttttttattt acaaaataaa
     6181 gacttaagag tatggtaaaa gaaatcgcaa ataaagtaaa agcgtattga tgtgctaaag
     6241 tatagtttaa aacttcaagc tcatcataaa tagcaatact tgcgactaaa gtttcacctt
     6301 ttttatgtcc acctatcatc atcaccactc caaattcacc gatagtgtgt gcaaaactca
     6361 tcgcacaagc actaaaaatt cctactttag aattgggtaa aatcactcta aaaagtgtgt
     6421 aaattttacc ctttcctaga gtataagaag catcaagtag gttttgattg atcgatgaaa
     6481 aagcactttg taaaggattt accataaagg gcagggaaaa aatcaaagaa gcaaaaacca
     6541 aaccttcaaa gctaaaaacc aaagaaagat taaaatattc ttttaaaaat tgtcctaaaa
     6601 agctgttttg tgaaaagctt atgagcaaat aaaaacccaa aacacttgga ggtaaaacca
     6661 aaggcaaggc cacaaaggtt tgtaccaaac ttttaaaagg aaatttcaca aagcttaaaa
     6721 gataggctaa aaatactccg atgaaaaaga gtataaaggt ggtgataaat gcaagtttaa
     6781 aggtaagata aagggtttgt aaaaaatcat tatccataaa cagcctttaa aatgatatca
     6841 ttttccttga caaagcaaag ccattcttgt ccttcttcga gtttgagttc caaggctttt
     6901 tctttggtga taatgctaga aatttcatca ccctcaaaat caaaaaagat atgatataga
     6961 attttgcctt ttttgatact tttaatcctt gctagaaatg aattttccac acttaaaata
     7021 gaatgaggca aggccaagcc aagttcgtgt tctttgaaaa gtacttgaat ttttgtacct
     7081 attttaagat cttgcaaaga atgaagatca agcattaaaa ctttaaaaat ttgctcttta
     7141 atactgatct taacgatgac aatctcaccc tcatttaaaa gctctataat cttaccattt
     7201 aagatattca aggtgtgtca aatccgtatt ttttaaagat ttcttttgct ttttgcgaac
     7261 tgataaaatc gctaaattca aaggctaatt ttttatcttt agcgtatttt gtgatgacat
     7321 agctttgttt taaaggagtg aagtattttt gatcaattaa aatagctttg cctttaggat
     7381 gattgataga agatactaga gaataagcca caatacccaa atccgcatta ttgctatcga
     7441 catgtaaaac aggcacggag atattttcac ctaaaacaat tttatcttca aagagtttgt
     7501 ctaaatttaa attttcaagc acttctttag cagctactcc ataaggagca acctttggat
     7561 ttgcaaggct taggtgatga attttatttg ctttatcttt tagcttttct atcccacctt
     7621 caagtaagct ttcatctaag ctatataggg ctaagatacc taaaacataa acttttggtt
     7681 tatctaaagc gttttgatcc tcataaattg cttgcgcgta ttttgtatcg gctgaaaaaa
     7741 atagatcaaa ttccctccct tgtttcaaaa gttgataata ctttcctgaa gcgccaaaaa
     7801 caagatctat attgtcatta gggtgtgatt ttaaaaattc atttttgacc tcttccatag
     7861 cttttgaagc cgaagaagct acgaaaacac ttaaattttg tgcatttaaa tttaaagata
     7921 aaaacaacac tataaaacat aacacgagct ttttcattgc actttccttt gtcgataatc
     7981 ttgatttttt gtattataac ataagaaatt ttattttgta tcttttttgc ataaaataaa
     8041 aataggatga taagtgagtt tattttgaaa tttttcttca aattctttta agaattgctt
     8101 gtttaagcga taaaatccca aagaatttac tccgcttaat ttcaaatgct taaaaacttc
     8161 taaagcgttt tgaaattcca aatttacaat ttcttctgtg attttaatat cggaaaaata
     8221 gggtttgaaa atttgttcaa gttcttttgt gctaaaatat tttaaaccca agcttgtgct
     8281 ttgtttgatc tcttttaaat tcatttctcc aaaagtagaa agaagtaaaa ttcctttttt
     8341 atttagcata tttgctagtg tgggcaaaac ctgctttaaa tcaagccatt gcaaacttgc
     8401 attagaagtg ataagatcaa atttttgctt gcttaaattc tgtgtagcta gggtattcat
     8461 atcaaaaatt tctacattaa gattatcagg ataatccaaa atatcatttt ttagatactc
     8521 atcaaaagtg ataatttttg aaagtttgtc gctaaattcg cccctgccac aaccaaattc
     8581 aaatactttt ttaaaatgcg aaatttctaa attttttaaa atttcacaaa gttttaaacc
     8641 cattaaatct tgcacttttg cgtgtttttg ataatctttt gcttttaaaa aattcaaatt
     8701 tcatcccaag ttttaaaatg aaaaaaagca aaatgcggct catctaaaaa aataagcttt
     8761 gaaaaagtat tttttaaagc attttgagga aaaatttcat catgattgct tgagtaaatt
     8821 ttatcccaaa taaagctttc attacgctct tttaaggcaa attcgaaaag tttttcaagc
     8881 tcggttttta aatctttttc atctttaaag ataaaatctt ttgcttcatt ttcgcgctct
     8941 ttaaataaag attttttaaa agctgtaaga tcaaattttt taatttgctt agcaaaaatt
     9001 gcaggatgaa ttccttttaa tttatctata ccaaaaggag taccattgat agctattttt
     9061 tgcgaaaact ctatattttt taaaactcta cttgccacgc aaactcccat agaaaaagct
     9121 atgagagtga ttttagaaaa agagtttaaa tcaaatttaa agtctaaatt ttcataatca
     9181 taaaccaaaa ctacattttt atcgcttttt aaatgtgcaa aatgactagg atgtgaagca
     9241 aaaccaccaa atactaagat aagttcttgt gagttttcat tttgaattaa attgcttatt
     9301 ttcataaaag ttctaccact ttctttaaat cttctttact aagtcctgca tgtaaagaaa
     9361 aacgaattct agctgtattt ttaggcaccg taggttcttt tatagcgggt gcaaaaatgc
     9421 catttatttc aagttttttt gctaattcta tagccttttg attttctcct aaaatcaagg
     9481 agatgatgta agcatcgcct aaaatttgat gacttttttc tatgagttga tttttaaaaa
     9541 aattgcctat gatttgtagt ttttctcttt tttcttttag ttcgctcatt ttttcaaaaa
     9601 taaattttgt ccaagctata ttgataggag gcaatgctgt agaataaata aaagctctag
     9661 ccttgttgat aaaaaagctt ttgtaaagat tattacaaat catacaagca cccatagaag
     9721 caagagcctt gccaaaggta aaaactataa aatcaacctt ttcttccaaa tttaaagctt
     9781 taacaagtcc caagccctct tcatcaaagc aacccacgct gtgcgcttca tcgatataaa
     9841 gtttgatttt ggggtatttt tctttaaggg cgatgagtgt attaaaatca gaaaaatcac
     9901 catccatact aaataatgct tcgcttaaaa tgatgatgtt ttcataatga tcataatgtt
     9961 tttgaattaa attttctaaa tgattcatat cgttatgatg aaagcgaaaa aattttgctc
    10021 cgccaagttt tagtccatca atcatacttg catggatgaa tttatctgct aaaaaaagtg
    10081 tatttggaat gcttgcaagt gcagctatgc aagagatatt aagatgataa ccgctgttaa
    10141 aatgtaagat ttctttttct ttaaatttgg attttaaaaa gctttctaat tcttcataaa
    10201 ttgtaaaatt tccactcaaa cttcttgaac tcgaacttga aaaaaataag tcttgttctt
    10261 tgatattatc taaaaattca tcttttaaag atttgcaaaa gcttaaattt aaataatcat
    10321 tccccgctaa atttaaaagc tttttgccct ctttaaaaac aaaatttcct tcatgtttaa
    10381 ggcttgtaag ttttctaagg ttgttttgtt cttttaattt atctaaaatt tgtttgattt
    10441 gcatgtttta actcgaattt atcttttaag tcttgcgtag tttttacaac ctgtatcata
    10501 ttttagatcg caagccttac cataaaattt tagagcttta gaaatatctt ttctaacacc
    10561 atagccattt tcatacatac cgccaaggtt aacgcagcta tttgcgtagt ccatatcgca
    10621 tgctattttt aaaaatttta ccgctttaaa atcatttttt tctacatatg taccatttgc
    10681 atacatagca ccgacaacac cgccactgct tccttcgttt aaattacatg ctttttcata
    10741 aagttctatc gctttaaatt tatcatcttt agttctcatg cctagcatat acataaatcc
    10801 taagttgcta caaccttgct tataattcaa atcgcaagct ttttgatatg attccattgc
    10861 tttaaaattg ttttttttga ctagtgtata catagtacca agttcattgc agccatttcc
    10921 attatttaaa tcacaagctt gttgaaaata ttttatagcg tttgtataat ccttattttt
    10981 ataagcattt tcaccttttt ctattaaatc ttcttgagaa catgcgaaat ttaaaaatat
    11041 aaatcccaa
//
LOCUS       DBBXRO010000049        10924 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.049, whole genome shotgun sequence.
ACCESSION   DBBXRO010000049 DBBXRO010000000
VERSION     DBBXRO010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10924
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.049"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            18..481
                     /locus_tag="ACJFEZ_000973"
                     /pseudo
     CDS             18..481
                     /locus_tag="ACJFEZ_000973"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
     gene            649..738
                     /locus_tag="ACJFEZ_000974"
     CDS             649..738
                     /locus_tag="ACJFEZ_000974"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917102.1"
                     /translation="MYFLASPKASFITGGLYLIDGGLTAGIPH"
     gene            816..2153
                     /locus_tag="ACJFEZ_000975"
     CDS             816..2153
                     /locus_tag="ACJFEZ_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HGG0917103.1"
                     /translation="MINSINSYSNYNYANTFSNTPNTKSSNVINKTSNLVSDKSQVVN
                     KVLGYGVDKDGFFTSDFNEKAGIPKDYKIYAKDMQSFVEWETGDRYFYATHTSIDIAK
                     TIGNAYKVLSQIMPTTSNASLSEEELTNIPYAFVLDKNLNVTKTFTKDEYEKIDLTQD
                     RINLTFNTFSNVGFDKISIDNIFSHSNGDVRLNKNAYINKDGSVDKGGILMALLNSQL
                     YGATSLLLEGDTRLFGKITTDKNISNDEREAFQNFMNTNKIQSAFLSSSNPNEWNPFE
                     ERLSMKLFIRRSDNIGNTELSRLAMDLDKEYQEMINSNMSLEEFKTKYLDFKQRHDEF
                     VKKLKVAEKAKGINYDIYPTGKPIDDTKAIEEAQKNKRKPIQAESKSETYKEDNTRNE
                     LLRKLLETKFGKSDELEILFGMKFSDDDTEEFNKILSQMGLNNAGSKSIDIKA"
     gene            complement(2150..2308)
                     /locus_tag="ACJFEZ_000976"
     CDS             complement(2150..2308)
                     /locus_tag="ACJFEZ_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917104.1"
                     /translation="MFKYLTRDFKDLKALQKAKDKAEELFYLDSEMVKNSKKIQGILK
                     GLIDENNS"
     gene            complement(2520..3719)
                     /gene="metK"
                     /locus_tag="ACJFEZ_000977"
     CDS             complement(2520..3719)
                     /gene="metK"
                     /locus_tag="ACJFEZ_000977"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HGG0917105.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGYFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     HPQELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSVPCVESMKIEDLRALVNKLIL
                     ESDLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYAPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCLGTNTGVN
                     DDVLSDFVMKNFSLTPNWIRDKFGLDKPSKETFLYADVAARGQVGQKDYPWEKLDAID
                     QFKTLIQ"
     gene            3871..5094
                     /gene="sstT"
                     /locus_tag="ACJFEZ_000978"
     CDS             3871..5094
                     /gene="sstT"
                     /locus_tag="ACJFEZ_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HGG0917106.1"
                     /translation="MFSKLVQSYAKGSLILQICAGIILGILVGISSKEIAEVVNLLGV
                     LFTNALKAIAPILVFILILTSICTRDFSQSSSKIRNIVILYIVGTFLAAACAVIASFM
                     FPVELVLEGVQKAENTSPMHLNEIFKNLLLNIVDNPINALSSGNYLGILAWAIGGGIA
                     LKNCSQEAKQIFVDINEGVLKIVKFIVKLAPFGIFGLVANSVAQTGAQGLLSYAKLLV
                     LLVLTMLFVAFVINALIVFIYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGINKEFYSISIPLGATINMAGAAVTIAILSLSAAHSVGIQVSFLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVVQDSVETALNSSTDVL
                     FSAICSKDELNYDIR"
     gene            5100..5981
                     /locus_tag="ACJFEZ_000979"
     CDS             5100..5981
                     /locus_tag="ACJFEZ_000979"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HGG0917107.1"
                     /translation="MRHLITTKDFTNDEIMELFEEARNFLDEKPRTLLEGKSVTTIFF
                     ENSTRTLSSFESAARRLGARILRLDVSRSSSSKGETLYDTATNLDAMSPNAIIVRHAN
                     SGVPYILASHMHCPVVNGGDGKHAHPTQALLDLFTIYEHFKGDIKGRKILIVGDIKNS
                     RVASSNAELLTRFGLDITFVAPPHFMPHSPLKKSYSLNEDLISKTDIIMSLRTQTERH
                     NKIIYGSLKDYANDFCIKLDLIKDKKLILLHPGPVHRNIDISDEVMDDERALVLKQVK
                     NGVAIRMAVLKKLILES"
     gene            5991..7706
                     /locus_tag="ACJFEZ_000980"
     CDS             5991..7706
                     /locus_tag="ACJFEZ_000980"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HGG0917108.1"
                     /translation="MLTWDLGVLFKNEDELENTTQNYIQQSKEFKKNYSTTLDKLNPD
                     DFLNALKEYEHLHLILSKIMTYAYLCFAKDSSKGSFYAKYEQECKKIEENLLFFELEF
                     CELSEEKTKELIKFCKGYDFYLQNLLQNKRYNLSQKEERIMLYLSNTGANAFSRLFDE
                     SMTALKIPFEGNKLSEEEILSKLYNNDRKIRKKAAKKFTKALDKNLNLLTFIFNMIKT
                     ELNNICKLRGYESAETPRHLQNQITQQSVDSLIQTTQKHFYLVSNFYKRKKQILGFNK
                     LKDYDRYAPIGKEAKFSFEESKKIILNAFYDFSPVFGDIAKEAFEKGWIDVYPQDKKQ
                     SGAFSHSATPDTHPFILLNYTDGRRDLFTLAHELGHTIHQKLSYNVSFLNQNTPLTTA
                     ETASVFAEMLVFDYVKNKLKKEELLALYAAKIEDIFATLYRQINFTCFERRIHANENE
                     LKSEEISQIWMEESQKMFGESVELSKNYALWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSNACSNFKELYIKMLSLGGSVSPKELVGMFGFDIEDKSFWEIGIVEIKKLIDE
                     FMRLK"
     gene            7706..8143
                     /locus_tag="ACJFEZ_000981"
     CDS             7706..8143
                     /locus_tag="ACJFEZ_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917109.1"
                     /translation="MIEKILENENFIALMQKNCYDLLSILIQENIEFSIVANTNFIDF
                     DPVLPENLDVKQNPFALFVLGGYTFESIQLEKDHIQFHAGFGPDDFASYVKVDLGAIT
                     QIQVENSVLFVNFSFYKRKDNTKSQKSKNIFLNNPKNKDIFKK"
     gene            8140..10200
                     /locus_tag="ACJFEZ_000982"
     CDS             8140..10200
                     /locus_tag="ACJFEZ_000982"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HGG0917110.1"
                     /translation="MNLFTGLNESQKEAASHIDGPMLILAGAGSGKTKTITTRLAYMI
                     GEVGIPAINTLTLTFTNKAASVMKNRALSLLNSNENPLLCTFHKFGLLFLKLHIERLG
                     RKNNFIIIDNDDSKKILKELINDDKTSPHQILQFISHFKNESKSVQDVFNDLELLKDN
                     EIKHQALQKIAIYYQNYQEYLLKHNFVDFDDLLLLTNILLENDQNFAKEQSSFYRYIT
                     VDEYQDTNALQYKILKNLCCIHENICVVGDDDQSIYSWRGAKIENILNFQSEFSNVKL
                     VKLEQNYRSVGMILKAANNLISHNKKRLGKTLLCTKDEGEDVQILSSDNEKIESVLVA
                     KKIKELLNSGIYAGEIAVLFRINALSRSIEEAFMKEKIPYKLLSGMRFYERLEIKDLI
                     CYFRILINPNDDLSFKRIINRPKRSIGEKALQNLEDYAQKRKISLFEALCESDGSVGI
                     FSLKKAQNEAKKFIQNIYKLREYSDLKKMIEKFEELFALKEFYALQEDGNERVLNIDE
                     FYASIKEKIKEEPQTTLEDILSEISLLSDQDGIEGECVYLMSVHASKGLEFDHVFIVG
                     LEEGFFPLNESDIEEERRLAYVAITRAKKCLSLSIAKSRFYRGSRTELDSSRFLEESQ
                     LTKKISINKTEQGYHKGDLVKHKIFGIGRVISVNKSAKEEKLTINFGGIERIIMASFV
                     EKAV"
     gene            10197..>10924
                     /gene="truB"
                     /locus_tag="ACJFEZ_000983"
     CDS             10197..>10924
                     /gene="truB"
                     /locus_tag="ACJFEZ_000983"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HGG0917111.1"
                     /translation="MNKIFVAFKPAEMSSNAFLGQIKKRYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYQATLWLGVKSLSLDNKNIQEIKLIKAFDIKLLEQIK
                     MELLGKISYTPPQFSAKRIEGKRAYEFAKRGENIELKSCIMEIFSCKIIHYTHPFLQL
                     ELSVSEGAYIRSYCELFAKKLGINATLSSLERTREGEFFYNHEKSLNVLEYLNLKPNF
                     IKDLTKLENGTKISLEELKFQDEG"
BASE COUNT         3967 a         1650 c         1764 g         3543 t
ORIGIN      
        1 caggaggctc tactggtatt ggcaatgctt gtgtacataa atttcataat gaaggctata
       61 aagtagcctt tatggatatc aatcaagaag aaggacaaaa aatagcgaat aatttaaaag
      121 atgtcttatt tatagcagga gatacaaaaa ataaagaaga tattaaaaat gctgtcgcta
      181 gagcagtaga aaaatttgga aattttgatg taatttcttt aaatgtagga atttatcgct
      241 gcaataccat tcttgatatt agcgatgagg agcttgattt gattattcaa accaatattt
      301 atggctatgt aaacaccatg aggatcgcca ttcctcatat gaaaaagaag gcggaagtat
      361 tgtaatcaat gcctctgacc aatgttttgt aggaaagcca aatagctttg catacggact
      421 tactaaaggt gctttaggac aaataacaaa atctttaagc ttagatttag caccaaaaat
      481 tagaataaat gctgtatgtg caggaactat caaaacaccg atggcagaga gattatttca
      541 agactttgcc aacattacac atggtggaaa tacagatttt tattggcaaa atgaagcaga
      601 aaaatatcct ttaaaaaagt aggacaagcc aatgaagtag ccgaactgat ttatttttta
      661 gcaagtccaa aggcaagttt tataactggt ggactttatt tgattgatgg tggattaaca
      721 gcaggaattc ctcattaaat acaattttta cttaagaaaa aatcattttt gccgatttac
      781 cttataaata aaactttatt tataaggtgg taaagatgat taatagtata aattcttatt
      841 caaattacaa ttatgcaaat acttttagca atactccaaa tacaaaatca tctaatgtca
      901 tcaataaaac ttcaaacctt gtaagcgata aatcacaagt agtaaataaa gtcttaggct
      961 atggagtaga taaagatgga tttttcacaa gtgattttaa tgagaaagca ggtattccaa
     1021 aagattataa gatttatgct aaggatatgc aaagctttgt agaatgggag acaggagata
     1081 gatattttta tgcaactcac acttcaatag atattgcaaa aacaatagga aatgcttata
     1141 aagtgctttc tcaaattatg ccgacaactt caaatgctag tctttctgag gaagaattaa
     1201 caaatatacc ttatgctttt gttttagata aaaatcttaa tgttactaaa actttcacaa
     1261 aagatgagta tgaaaaaata gatttaactc aagatagaat taatttaact tttaatactt
     1321 tttcaaatgt tggctttgat aagatcagta ttgacaatat ttttagtcat agcaatggcg
     1381 atgtaagatt aaataaaaat gcttacatta ataaagatgg tagcgtagat aaaggtggaa
     1441 ttttaatggc tcttttaaat tctcaactct atggagcaac ttcattactt ttagagggcg
     1501 atacgagatt atttggaaaa attacaaccg ataaaaatat tagcaatgat gagcgtgaag
     1561 cttttcaaaa ttttatgaat accaataaaa ttcaaagtgc ttttttatct tcaagcaatc
     1621 ctaatgagtg gaacccattt gaagagcgac tatcaatgaa gctttttatt agaagaagtg
     1681 ataatatagg aaatactgaa ctttcaagac ttgcaatgga tttagacaaa gaatatcaag
     1741 aaatgattaa ttctaatatg agtttggaag aatttaaaac caaatatctt gattttaaac
     1801 aaaggcacga tgagtttgtg aaaaaattaa aagtggcaga aaaagcaaaa gggataaatt
     1861 atgatatata tcccacagga aaacctattg atgatacaaa agcaattgaa gaggcacaaa
     1921 aaaataagag aaaacctata caagcagaaa gtaaaagcga aacctacaaa gaagacaata
     1981 caagaaatga gcttttaaga aagctactag aaactaaatt tggtaaaagt gatgaattag
     2041 aaattctttt tggtatgaaa tttagcgatg atgatacaga ggaatttaat aaaattcttt
     2101 ctcaaatggg tttaaataat gctggaagta aaagcataga tattaaggct taagaattat
     2161 tttcatcaat taagcctttt aatatccctt gtattttttt agagttttta accatttcac
     2221 tgtcaagata aaataattct tcggctttat cctttgcttt ttgtaaagcc tttaaatctt
     2281 taaaatctct tgttagatat ttaaacaatc gcttgtctgt ttttctttct gcgattacaa
     2341 ataagctttt tctgtctttt tcatattcat aagaaatgga ctatcatacc ttgtatcgtg
     2401 gatacttttg cctatatatt cttttacaat ctcaataagt ctattgatga agtttgaatt
     2461 ttaaattggt tttatattaa gatgaaattt aaagtatgat aagccttgaa aaacaaggct
     2521 tattggatta aagtcttaaa ttgatctata gcatcaagtt tttcccaagg ataatccttt
     2581 tgtcctactt gtccacgagc tgctacatca gcataaagaa aagtttcttt gctaggttta
     2641 tcaagaccaa atttatcacg aatccaattt ggggttaaag agaaattttt cattacaaaa
     2701 tcacttaaaa catcatcatt tacccctgta ttggttccta aacaatctac acttacagaa
     2761 gtaggtttag caacacctat agcataactg agttgaacta tacacttttt agcaagtcct
     2821 gctgcgacta tatttttagc aagccatctg cccgcataaa gtccacttct atcaaccttg
     2881 gtataatcct tgctagattg cgcaccccct cctataggag catatccccc aaaactatcc
     2941 actataagtt ttcttcctgt taaaccacta tcatgtaaag aagaatgatt gacatatttt
     3001 cctgttggat tgattaaaat tctagtttta ttaggatcaa aaagttcttt tggtaaatca
     3061 ctttctagga tcaatttatt tactaaagct cttaaatcct ctattttcat actttcaaca
     3121 caaggcacag aaacaacgat agtatgaata ctttgcggtt tacaattttc aaaattcgcc
     3181 tttgtaccat aatcaatagt cacttgagtt ttaatatcta cacccaactc ttgtggatga
     3241 gcttttgcat aagcataaac tctatcacat agcattcttg cataactaat agctgctggc
     3301 atgtattctt cagcttcaca acttgcaaaa ccaaacataa taccttgatc gcccgctcct
     3361 gtttcgccat cttcttgatc gacaccttga ttaatatcag ggctttgctc atttaaaaat
     3421 accataacat cgacttcatc gggatgcaag cattgttctt tgctaaaata tcctgctcca
     3481 tcatagccta tatttttcaa aacatcttta actaaattat cgtaatcagc tttactaagc
     3541 ttgtgatttg atttgacttc tcctcctatc acaaccttat ttcctgcgac aaaaacctca
     3601 ctcgccaccc ttgaattttt gtcatttttc aagagtatat ccactattgt atcagcgatt
     3661 atatcagcgc atttatctgg atgacctgcg cttacgactt ctgaagtgaa tagatacata
     3721 aaaagtcctt tcataaaaaa tgagttacaa ttctaactca aataaattta ttcaagctta
     3781 atgctgtaaa aaattcacta aaattaagca aaagttcgtt aaaatcaagc ccgatatatt
     3841 gcatcaaatt tcaaaataat aaaggttctt atgttctcaa aactagttca aagctacgcc
     3901 aaaggtagtc taatccttca aatctgcgca ggtataattt taggcatact cgtaggaata
     3961 agctctaagg aaatagctga agttgtcaat ttattgggag ttttatttac caatgcttta
     4021 aaagctatag ctcctattct tgtctttata ctcattttaa cttcgatttg tacgagagat
     4081 ttttctcaaa gtagttctaa gataagaaat attgtcattt tatatattgt aggaactttt
     4141 ttagcagcag cttgtgcagt gattgcaagt tttatgtttc ctgtggaatt agtcctagaa
     4201 ggagttcaaa aagcagaaaa tacttctcct atgcatttaa atgaaatttt taagaattta
     4261 cttttaaata tagtagataa tcctatcaat gcactttcaa gtggaaatta tttaggaatt
     4321 ttagcttggg caataggcgg tggtatagct ttgaaaaatt gctcgcaaga agcaaaacaa
     4381 atttttgtag atatcaatga aggggtttta aaaattgtta aatttatagt aaaactcgct
     4441 ccttttggaa tttttggttt ggtggctaat tctgtggcac aaacaggagc gcaaggattg
     4501 ttaagctacg caaaactctt agtattgctt gtacttacta tgctttttgt tgcttttgta
     4561 atcaatgcct taattgtttt catttatact agaaaaaatc cttttccttt gatttttatc
     4621 tgcttaagac acagcgcttt ttttgctttt tttacaagaa gctcagctgc aaatattcct
     4681 gtaaatatgg cactttgtgc taaacttgga atcaataaag aattttatag tatctccatc
     4741 cctcttggag caaccataaa catggcaggt gcagcagtaa ccatagctat actaagcctt
     4801 agcgccgcac atagcgttgg catacaagta agttttttgc aagccttttt attaagcatt
     4861 attgctactt ttgcagcttg tggcgcaagt ggcgtggcgg gcggttcgct tttacttatc
     4921 cctttagctt gctctttatt taacatagac tatgatatcg ctatgaaagt agttgcaata
     4981 gggtttatca taggcgtagt acaagatagt gttgaaacgg cattaaatag ctcaacagat
     5041 gttttattta gtgctatttg ttctaaagat gagttaaatt acgatataag gtaaatacaa
     5101 tgaggcatct catcacaaca aaagatttta ctaatgatga aataatggag ctttttgaag
     5161 aagcaagaaa ttttttagat gaaaaaccta gaaccttact cgaaggcaaa agtgttacaa
     5221 cgatattctt tgaaaattcc acgcgtacac tctcatcctt tgaaagtgcc gcaagaagac
     5281 taggagctag aattttacgc cttgatgttt caagatcgag ctctagtaaa ggcgaaacac
     5341 tctatgatac agcgactaat ttagacgcta tgagtcctaa tgctatcata gtaagacatg
     5401 caaattcagg agtaccttat attttagctt ctcatatgca ttgtcctgtt gtaaatggtg
     5461 gagatggcaa acatgcacac cctactcaag ccctacttga tctttttaca atttatgaac
     5521 attttaaagg tgatatcaag ggtagaaaaa tcttaatcgt aggagatatt aaaaattcaa
     5581 gagttgcctc ttcaaacgct gagcttctaa caagatttgg tttagatatc acctttgtgg
     5641 caccgcccca ttttatgcct cattcacctt taaaaaaatc ttattcttta aatgaagatt
     5701 taatctcaaa aaccgatatt ataatgagct taagaacaca aacagaaaga cataataaaa
     5761 tcatttatgg ttctttaaaa gattatgcaa atgatttttg tatcaagctt gatttgatta
     5821 aagataaaaa actcatcttg ctccatcctg gccctgtaca tagaaatatc gatataagcg
     5881 atgaagtgat ggatgatgaa agagctttag ttttaaaaca agttaaaaat ggcgttgcta
     5941 tcagaatggc tgttttaaaa aaattgattt tagaaagcta aggagaaaat atgttaactt
     6001 gggatttggg agtattgttt aaaaacgaag atgaattaga aaacacaacg caaaactata
     6061 ttcaacaatc taaagaattc aaaaaaaatt attctactac tttagataaa ttaaaccctg
     6121 atgattttct aaacgcttta aaagaatacg aacatttaca tttaatactc tcaaaaatta
     6181 tgacttatgc ttatttatgc tttgctaagg atagctccaa gggttctttt tatgctaaat
     6241 atgaacaaga atgtaaaaaa atagaagaaa atttattatt ttttgaatta gaattttgtg
     6301 aacttagtga agaaaaaact aaagaattga ttaaattttg caaaggctat gatttttact
     6361 tgcaaaatct tcttcaaaat aaacgctata atctaagcca aaaagaagaa cgcataatgc
     6421 tttatctttc aaacacagga gctaatgctt ttagtagatt atttgatgaa agcatgactg
     6481 cattaaaaat tcctttcgaa ggcaataagc ttagcgagga agaaatttta agcaagcttt
     6541 acaataatga cagaaaaata agaaaaaaag ccgctaaaaa atttaccaaa gctcttgata
     6601 aaaatttaaa tttactcact tttattttca atatgatcaa aacagaatta aacaatatct
     6661 gcaaattacg cggatatgaa agcgcagaaa ctccaaggca cttgcaaaat caaatcaccc
     6721 aacaaagtgt tgattcgctg attcaaacca cgcaaaaaca tttttacctc gtatctaatt
     6781 tctataaaag aaaaaaacaa attttaggct ttaacaaact taaagattat gatcgttatg
     6841 cacccattgg caaagaggca aaattcagtt ttgaggaaag taaaaaaatc attttaaatg
     6901 ctttttatga tttttctcct gtttttggag atattgcaaa agaagcattt gaaaagggtt
     6961 ggatagatgt ttatccacaa gataaaaaac aaagtggtgc tttttcacat tcagctaccc
     7021 cagatactca tccttttatc ttgctaaatt atacagatgg aaggcgcgat ctttttacgc
     7081 ttgctcatga gttaggacac accatacatc aaaaactttc ttataatgtt tcttttttaa
     7141 atcaaaatac tcctttaact acagctgaaa ctgcttcagt gtttgctgaa atgttggtat
     7201 ttgattatgt taaaaacaag ctcaaaaaag aagaattgtt agcgctttat gctgcaaaaa
     7261 tcgaagatat ttttgccact ctttatagac agattaattt cacttgtttt gaaagacgca
     7321 ttcatgctaa tgaaaatgag ctaaaaagtg aagaaatttc tcaaatttgg atggaagaat
     7381 ctcaaaaaat gtttggtgaa agcgtggaac taagtaaaaa ttatgccctt tggtggagtt
     7441 atattcctca ttttatccat agcccttttt attgttatgc ttatgcttat gcccaacttt
     7501 tagtactcgc gctttatggg ctttacaaga gcaatgcttg tagcaatttt aaagaacttt
     7561 atatcaaaat gctctctctt ggaggaagcg tgagtccaaa agaacttgtg ggaatgtttg
     7621 gatttgatat agaagataaa agcttttggg aaataggtat agtagaaatc aaaaaactta
     7681 tcgatgaatt tatgaggcta aaataatgat agaaaaaatt cttgaaaatg aaaatttcat
     7741 tgctttaatg caaaaaaatt gctatgattt actttcaatc ttaatccaag aaaatataga
     7801 attttctata gtggctaata caaattttat tgattttgat cctgtgttgc ctgaaaattt
     7861 ggatgttaaa caaaatcctt ttgcattatt tgtccttgga ggatatactt ttgagtccat
     7921 tcaattagaa aaagatcata tacaatttca tgcaggtttt ggccctgatg attttgctag
     7981 ctatgttaaa gtagatcttg gagcaattac tcaaattcaa gttgaaaata gtgttttgtt
     8041 tgttaatttt agtttttaca aacgcaaaga taatacaaag tcacaaaaat ccaaaaatat
     8101 ctttttaaac aaccctaaaa acaaagacat tttcaaaaaa tgaatttatt tacaggttta
     8161 aacgaaagtc aaaaagaggc tgcaagtcat atcgatggcc ctatgcttat actagcaggt
     8221 gcgggtagtg gaaaaaccaa aacaattaca acgcgtcttg cctatatgat tggggaagtt
     8281 ggaattcctg ctatcaatac cctaacccta acctttacaa acaaggctgc aagtgtgatg
     8341 aaaaatagag ccttaagcct tcttaatagc aatgaaaatc ctttactttg cacttttcat
     8401 aaatttggct tattgttttt aaaactccat atagaaagat taggaagaaa aaataatttt
     8461 attatcatcg ataatgatga ttctaaaaaa attttaaaag aactcattaa tgatgataaa
     8521 actagccctc atcaaattct tcagtttatc tcacacttta aaaatgaaag taaaagtgtt
     8581 caagatgtat ttaatgatct agaattgtta aaagataatg aaatcaaaca ccaagccttg
     8641 caaaaaattg ctatttatta tcaaaactat caagaatatt tactcaagca caatttcgta
     8701 gattttgatg atcttttact tttgaccaat attcttttgg aaaatgatca aaatttcgcc
     8761 aaagagcaaa gctcttttta tcgttatatc acagtcgatg aatatcaaga taccaatgct
     8821 ttacaataca aaattcttaa aaatctttgc tgcattcatg aaaatatatg cgttgtaggg
     8881 gatgatgatc aaagcattta tagttggcgt ggtgcaaaga tagaaaatat tttaaatttc
     8941 caaagtgaat tttcaaatgt aaaacttgtt aaattagagc aaaattatcg ttctgtgggt
     9001 atgattttaa aagctgctaa taacctaata tcacacaata aaaaacgtct tggaaaaacc
     9061 ctactttgca caaaagatga gggtgaagat gttcaaattc taagttcaga taatgaaaaa
     9121 atcgaaagtg tattggtggc taaaaaaatc aaagagcttt taaattcggg catttatgct
     9181 ggagaaattg ctgttttatt tcgtatcaat gctctttcaa gatccataga ggaagccttt
     9241 atgaaggaaa aaattcctta taaattgcta agcggaatgc gtttttatga aagacttgaa
     9301 atcaaagatc tcatttgcta ttttagaatt ttaatcaacc ctaatgatga tttatccttt
     9361 aaacgcatta tcaataggcc taaaagaagc ataggtgaaa aagctttaca aaatttagaa
     9421 gattatgcac aaaaaagaaa aatttcactc tttgaagcat tgtgcgaaag cgatggcagt
     9481 gtgggaattt tttctcttaa aaaagcacaa aatgaggcaa aaaaattcat acaaaatatt
     9541 tacaaactta gagaatattc tgatttaaaa aaaatgattg aaaaatttga agaacttttt
     9601 gctcttaaag aattttacgc tcttcaagag gatggcaatg agcgcgtatt aaatattgat
     9661 gaattttatg caagcatcaa agaaaaaata aaagaagaac cacaaacaac cctagaagat
     9721 attttaagtg agatttcact gttaagcgat caagatggga ttgagggaga atgtgtatat
     9781 cttatgagtg tgcatgcgag caagggtttg gaatttgatc atgtatttat agtaggactt
     9841 gaagaaggat tttttccttt gaatgaaagc gatatagaag aagaaagacg ccttgcttat
     9901 gtggctatca ctcgcgctaa aaaatgtcta tcgctaagca ttgcaaaatc tcgtttttac
     9961 cgaggaagtc gcacggaatt agactctagt cgttttttag aagaaagtca attaacaaaa
    10021 aaaatctcta taaacaaaac cgaacaagga tatcataaag gagatctagt caaacataaa
    10081 atttttggca taggacgcgt tattagtgtc aataaaagcg caaaagaaga aaaacttacc
    10141 ataaattttg gcgggataga acgcattatt atggcaagtt ttgtggaaaa agccgtatga
    10201 ataaaatttt tgttgctttt aaacccgcag aaatgagttc taatgctttt ttaggtcaga
    10261 taaaaaaaag atataaaaat aaaaaggcag gttattcagg aaccttagat ccctttgcca
    10321 aaggggtttt aatagtcgcc tttgggcaat acactaagct ttttagattt ttaaaaaaaa
    10381 ctccaaaaac ataccaagca acactttggc ttggggttaa atctctaagt cttgataata
    10441 aaaacataca agaaataaag cttataaaag cttttgacat taaactctta gaacaaatca
    10501 aaatggaact tttaggaaaa atttcttata ctccaccgca atttagtgct aaaagaatag
    10561 aaggtaaaag agcttatgaa tttgccaaaa gaggtgaaaa tatagagtta aaatcttgta
    10621 taatggaaat tttctcttgc aaaatcatac attatactca tcccttttta cagcttgaat
    10681 taagcgttag cgaaggagct tatataagat cttattgtga gctttttgct aaaaaattag
    10741 gtattaatgc cactttaagt tctcttgagc gcacccgtga gggagaattt ttttataatc
    10801 acgaaaaaag tttaaatgtg ttagaatatc taaatttaaa gcccaatttc attaaagatt
    10861 taacaaaact tgaaaatggc actaaaatat ccttggaaga attaaaattt caagatgagg
    10921 gttt
//
LOCUS       DBBXRO010000050        10897 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.051, whole genome shotgun sequence.
ACCESSION   DBBXRO010000050 DBBXRO010000000
VERSION     DBBXRO010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10897
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.051"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            116..820
                     /locus_tag="ACJFEZ_000984"
     CDS             116..820
                     /locus_tag="ACJFEZ_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HGG0917112.1"
                     /translation="MTQEELDALMNGDVNFDEDAESNIKSETESHNIESEEGLMLEDV
                     KVSDYKPDPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSEN
                     LFSEIDKVLAKNIEIFSKLNEKFPNVVSFNEALQLNSKVKKTSQEIIDKLQCGQDEVM
                     MAMDAMQYQDIHRQKIERVINVMRALSRYMSSLFEGRIDDKKRVSSAVHIEGDSTTDI
                     VSNDDIEALIASLGQK"
     gene            817..2073
                     /locus_tag="ACJFEZ_000985"
     CDS             817..2073
                     /locus_tag="ACJFEZ_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase U32 family protein"
                     /protein_id="HGG0917113.1"
                     /translation="MIIPEIVAPAGNFAKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIEYTHQRGKKVYVTLNGFHLGGQIESLKKHILKLKEMKPDAFIVASVGAM
                     ALVRELAPEIALHVSTQANVLNYLDARVYKNMGAKRVVIARELGLKDAKSLKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGVLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMKEDCISAFKIEGRTKSEYYVALTTRTYKMAIQDVL
                     EGKFEASKYEKEIATLKNRGFTDGYLVSRPLEKADTQNHDTSIEEGTHQVHAIVEDGE
                     YFKCKGKVVLNKAYEILMPLGDEIETCDNKLGKIYKKEDKYFVEFKKLISKNNKEFNE
                     IHSGNENEIKMPNKISSFSFLRKEIG"
     gene            2070..2564
                     /gene="purE"
                     /locus_tag="ACJFEZ_000986"
     CDS             2070..2564
                     /gene="purE"
                     /locus_tag="ACJFEZ_000986"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HGG0917114.1"
                     /translation="MKFVSIMMGSKSDYEIMSECAKTLEKFGVKYELIISSAHRSPKR
                     TKEYIKEAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSTLASMDSLFSTV
                     QMPGGIPVGTLAVGKAGAKNAAYLAMQILALNDETLAKALKQDRKNQEENLISDSKSV
                     EVLL"
     gene            2577..3131
                     /locus_tag="ACJFEZ_000987"
     CDS             2577..3131
                     /locus_tag="ACJFEZ_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HGG0917115.1"
                     /translation="MQTYLELQEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAN
                     QGTFSVVPSASNSKPAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLDALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNHELKHAREEIEFLKRKYKLMWSKTAEIFGARTE
                     PDLEMKKDENSSTANEKLNENKEG"
     gene            3133..3996
                     /gene="glyQ"
                     /locus_tag="ACJFEZ_000988"
     CDS             3133..3996
                     /gene="glyQ"
                     /locus_tag="ACJFEZ_000988"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HGG0917116.1"
                     /translation="MTFSQMILNLQEFWQKQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWATAYVAPSRRPTDGRYGENPNRLGAYYQFQVLMKPSPDNIQELYLKSLENLGFD
                     LKSHDVRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKRSEYEFSKYNFEISNVDFLNQQFE
                     NTYKECKSILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKTCA
                     EIYKKNLDETD"
     gene            3983..4708
                     /locus_tag="ACJFEZ_000989"
     CDS             3983..4708
                     /locus_tag="ACJFEZ_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HGG0917117.1"
                     /translation="MKLIEIYNFLDKLSPFETQEIWDNSGLLLGNFNDEIHNVYLSLD
                     IDEQLIQNAEENSLFITHHPLIFKGLKDLANSAYPRAFVKEMLRKNLSLISMHTNFDL
                     SHLNTYFIEEILGFEISSKNKFLAYIDVDMSFEELCIVVKKRLNLEILRTSFCGKEYL
                     KRLAVCTGSGGDLLNEVKADCYLSGDFKYHQALEAISNHLNLIDLGHFESERYFAQCL
                     AKHLKNLPLKVIITVSKNPFQYF"
     gene            4718..5434
                     /locus_tag="ACJFEZ_000990"
     CDS             4718..5434
                     /locus_tag="ACJFEZ_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HGG0917118.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSFEPKMESISKTLKDAENKIAKFNV
                     ELNNLENEIQDVENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKELFKKELLEERAKEEQNLDEIRVSISSQMDGLEKERMNV
                     YTKKTKLVAEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVIKGE
                     EIITCPHCGRILYKEQEDQN"
     gene            5431..6588
                     /gene="waaA"
                     /locus_tag="ACJFEZ_000991"
     CDS             5431..6588
                     /gene="waaA"
                     /locus_tag="ACJFEZ_000991"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HGG0917119.1"
                     /translation="MIFLYYILVWIAFLLCAIPLFLLSLFKPKYKYSLKARFFLFRNI
                     SQKRSDVHFHVCSYGEARSVKELVLRFDSRITTITQTGYDYAKEICNKVNYLAFENWI
                     PFWLKPSKVLVIFEAEYWLMLVFIAKLQKSKVILLNARISDNSYASYKKFRFFYKKIF
                     CYIDEVFAQSEVDKIRLEDLGAKNVKIFSNIKSKLQIFPTQKYLKPKRKLIIFASTHK
                     GEEELLLKHYKMDKQEKLIIAPRHPERFLEVEQLLHDKGLKFDKFSLLQNEDKKFNQD
                     ILLLDCLGELVNFYAISDVVVLGGSFFEGIGGHNPIEVAHFNNVLISGIYIHNQKSLF
                     QEVDNVYFCEDLKELDGIIHNYNLKAKIAQNNDLSTIIQAIQEGIDARKSI"
     gene            6569..7321
                     /locus_tag="ACJFEZ_000992"
     CDS             6569..7321
                     /locus_tag="ACJFEZ_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HGG0917120.1"
                     /translation="MQEKAYKLLALQENISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKTKFSIVKTSKPKVIFEDENIIAINKPYAYISEELEKKFNAKLLNRLDKETSGVILL
                     CKNEDFRKICIEEFKKQRVYKSYIAVLDGILAEEIEIDEPILTIKTKNGALSKISKEG
                     LSAVSIFTPIMMQAKKTLAKIIIKTGRTHQIRVHAKFIKHGIIGDEKYAKISSDRMYL
                     HSHEIRILNYQFKAELDSSFSKLGFEIKNLDF"
     gene            7389..8726
                     /gene="ffh"
                     /locus_tag="ACJFEZ_000993"
     CDS             7389..8726
                     /gene="ffh"
                     /locus_tag="ACJFEZ_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HGG0917121.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALDTLKKALLKADVHHK
                     VVKDLLLLIEEDVKKNGIGQKQFLEAIKTNLENILNADGKNQGFVFATKPPTVVLMVG
                     LQGGGKTTSTVKLANYLKLRNKKVLIAACDLQRLAAVEQLKQLCEANELDLFYIENEK
                     DPIKVAQQALEKAKNSMADVLLVDTAGRLAIDEALMNELKAVKNVLNPDEIFYVADAM
                     SGQDGVKTASSFNELLGITGVILSKFDADTKGGIALGITKQIGIPLRFVGVGEKIADL
                     EIFIPERIVNRIIGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLTQMESV
                     KKLGSMKSIIGMIPGLSNVASSVKDLDLDNSKEIIHIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFANAAKLAKRFSGKKGMDSLMQMMNQARRQF"
     gene            8794..9021
                     /gene="rpsP"
                     /locus_tag="ACJFEZ_000994"
     CDS             8794..9021
                     /gene="rpsP"
                     /locus_tag="ACJFEZ_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HGG0917122.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVVKFDSERLAYWKSVGAKLSDKVASITSK"
     gene            9027..9269
                     /locus_tag="ACJFEZ_000995"
     CDS             9027..9269
                     /locus_tag="ACJFEZ_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HGG0917123.1"
                     /translation="MVENFLREYAKLIADYPDKIATEKIKLDENFAEIILYADKIDTG
                     KLIGKNGKMINAIKTVVSACKSKDSMSYRVTVKALE"
     gene            9262..9801
                     /gene="rimM"
                     /locus_tag="ACJFEZ_000996"
     CDS             9262..9801
                     /gene="rimM"
                     /locus_tag="ACJFEZ_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002803049.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HGG0917124.1"
                     /translation="MSERNFIQVAKLGKTVGLKGYLKLYNLSDFIQQFKKGASFFTEN
                     GKSQLKIKHYNLANSSVLFEGYENVEAAKQLINLILYQSIEATRQTCILKKDEFFYFD
                     ILKCEVFDDERRLGKVVDILEVGDSYLFEIQSDQELIDKAYAKTFFIPYIDKYVNKID
                     IEKYSIFCTKDVFLILENS"
     gene            9798..10502
                     /gene="trmD"
                     /locus_tag="ACJFEZ_000997"
     CDS             9798..10502
                     /gene="trmD"
                     /locus_tag="ACJFEZ_000997"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HGG0917125.1"
                     /translation="MKFSFVSLFPNLLEFYFKDSILARAIQKELFQLDFLNPRNFTDN
                     IYHKVDDYKIGGGAGLLMQIKPLYNTLKFIKDSEKDPYFIFLNPSGKTFNQKDAKRLS
                     KKENIVFVCGRYEGIDERVIEIFANEVFSIGDFILTGGELPALTLCDAIARNINGVLG
                     NACSLEEESFENDLLEAPSFAKPFIFEQNFKKFYTPSEFLKGNHAKIATLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            10513..10869
                     /gene="rplS"
                     /locus_tag="ACJFEZ_000998"
     CDS             10513..10869
                     /gene="rplS"
                     /locus_tag="ACJFEZ_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HGG0917126.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPEFRAGDTLRLAIRIKEGDKTRIQN
                     FEGICIARRGNGVDETFIVRKMGANNVGVERIFPIYSESLESITVVRKGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         4039 a         1310 c         2080 g         3468 t
ORIGIN      
        1 attttttgaa atttacttac aaaactatga aaatttaaat ttatattttc attttagata
       61 aatttgatta taatcgtagt actaaaacaa aatctaggtt taaaaaagga aaaagatgac
      121 tcaagaagaa cttgacgcct tgatgaatgg tgatgtaaat tttgatgagg atgcagagtc
      181 taacattaaa agcgaaacag agtctcacaa tatagaatct gaagaaggat taatgctaga
      241 agatgtaaag gtgtctgatt ataaaccaga tcctagtgtt gtatggccac caccaccacc
      301 aaatcaagaa cataaggtag ttcatcaact tgatgatgtt actaaagaca gtgagttaaa
      361 agctactgag atgatggata agctagaaag tatcaataat ttctttgcag attctgaaaa
      421 tttgtttagt gagattgata aagtattagc taaaaatatt gaaatatttt caaaactaaa
      481 tgagaaattt ccaaatgttg tcagttttaa tgaagctttg cagttaaatt caaaagtgaa
      541 aaaaacaagt caagaaatta ttgataagtt gcaatgtgga caagatgaag taatgatggc
      601 aatggatgct atgcaatatc aagatattca ccgtcaaaaa atagagcgcg ttatcaatgt
      661 aatgcgtgcc ttgagtcgct atatgagttc tttgtttgaa ggtaggattg atgataagaa
      721 acgagtgagt tctgcagttc atattgaagg tgattctact actgatattg taagcaatga
      781 tgatatagaa gcgcttatag caagtttggg tcaaaaatga ttattccaga gattgtagct
      841 cctgcgggaa attttgcaaa attaaaaatc gctttagctt atggagctga tgcagtttac
      901 gcaggggtaa ataatttttc tttgcgctct cgcactgcta gagaatttaa ttatgagagt
      961 tttgaagaag ctattgagta tacccaccaa agaggcaaaa aggtttatgt tactttaaat
     1021 ggttttcact tgggtggaca aatagaatct ttaaaaaaac atattttaaa gcttaaagag
     1081 atgaaacctg atgcttttat agtagcttca gtgggtgcaa tggctttggt tcgagagtta
     1141 gctcctgaaa tagccttgca tgtatctact caagctaatg ttttaaacta tcttgacgca
     1201 agagtttata aaaatatggg tgcaaaacga gtagttatcg caagagagtt gggtcttaaa
     1261 gatgctaaaa gtttaaaaga aaattgcgat attgagctag aagcttttgt gcatggatcg
     1321 atgtgttttg cttactcggg tcgctgtttg atcagctcgg ttcaaagcgg aagaatgagt
     1381 aatcgtggct cttgtgctaa tgattgtaga tttaattacg aactttatgc aaaaaatcct
     1441 gaaaatggag tactttttcg tttagaagaa gatgaaaatg gtacccatgt atttaactct
     1501 aaagacttaa atttatgctc ttacatagaa aaaattatga aagaagattg cataagcgca
     1561 tttaaaatag agggccgtac taaaagtgag tattatgttg cacttacaac tagaacttac
     1621 aaaatggcca tacaagatgt tttagaaggt aaatttgagg caagtaagta tgaaaaagaa
     1681 attgctacgc ttaaaaatcg cggttttaca gacggttatc ttgtctcacg ccctttagaa
     1741 aaagcagata cacaaaatca cgatacgagc atagaagagg gtactcatca agtacatgct
     1801 atcgttgagg atggagagta ttttaaatgc aagggcaagg ttgttttaaa caaagcttat
     1861 gaaattttaa tgcctttagg tgatgaaatt gagacttgtg ataataaatt gggtaagatt
     1921 tataaaaaag aagataaata ttttgtagaa tttaaaaaac ttatttctaa aaacaataaa
     1981 gaattcaacg aaattcatag cggaaacgaa aacgaaatca aaatgccaaa taaaatcagc
     2041 agttttagtt ttttaagaaa ggaaattgga tgaaatttgt atcaattatg atgggaagca
     2101 agagtgatta tgaaatcatg agcgaatgtg ccaaaacgct tgaaaaattt ggtgtaaaat
     2161 atgaactcat tatcagttct gctcaccgta gtccaaagcg aactaaggaa tatattaaag
     2221 aagcagaaga aaaaggagct aaagttttta tcgcagctgc tgggatggca gcacatttag
     2281 caggagcagt tgcagcttat acaaccaaac ctgttttggg agtacctatg cctggaagta
     2341 ctttagcgag tatggattct ttattttcaa ccgtgcaaat gccaggtgga attcctgtgg
     2401 gaactttagc agttggcaaa gcaggagcta aaaatgcagc ttatttagct atgcaaattc
     2461 ttgctcttaa tgatgaaact ttagcaaaag ctttaaagca agatagaaaa aatcaagaag
     2521 aaaacttaat cagtgattct aagagtgtag aagttttatt gtaaaaaagg atgaaaatgc
     2581 aaacttattt agagctccaa gaattttgta aacttgtgca tttaaatgaa gatgttgtaa
     2641 agggaatgat ggcaaatggt gctttaaatt tcaaagaaga agagggaaaa atttatatcg
     2701 aagcaaacca aggaactttt agcgttgttc caagtgcttc taactcaaag cctgctatgg
     2761 taaattctat gactttggca ggagaaagct ttgtagaaaa gactatagga acaattttaa
     2821 atttgcatga gaaggtttta gatgcaaagg atgaaactct tgatgcttta aaaaatgaaa
     2881 ataaattttt aaaagatgca ctttattcaa tgcaagagct ttatgatgaa gatagaaaaa
     2941 ctattgaaac tttaaatcat gaattaaaac acgcccgaga agaaatagaa tttttaaaac
     3001 gtaaatataa gcttatgtgg agtaagacag ctgaaatttt tggggcaaga actgagcctg
     3061 atttggaaat gaaaaaagat gaaaattcta gtacagcaaa tgaaaaatta aatgaaaata
     3121 aagaaggtta aaatgacttt ttctcagatg atattaaatt tacaagagtt ttggcaaaaa
     3181 caaggttgtg caatcatgca gccttacgat atgccagcag gagctggaac tttccatcca
     3241 gcaacttttt taagaagtct aggcaaaaaa ccttgggcta ctgcttatgt agctccttcg
     3301 cgtcgtccaa cagatggaag atatggagaa aatcctaatc gtctaggagc ctattatcaa
     3361 tttcaagtcc taatgaagcc aagtcctgat aatattcaag aactttattt aaaaagcctt
     3421 gaaaatttag gttttgatct taaaagccat gatgtgcgtt ttgttgaaga caattgggag
     3481 agtccaagtc ttggcgcttg gggtcttggt tgggaagttt ggcttgatgg tatggaagta
     3541 actcaattta cctattttca acaagttggt ggaatcgcag tagatttggt aagtgctgaa
     3601 atcacttatg gacttgagag gattgctatg tatctccaaa atgtagataa tgtttatgat
     3661 attgtttgga gcgaatttaa tggggaaaaa attaaatacg cagatgtgca taagcgcagc
     3721 gagtatgaat ttagtaaata taattttgaa atcagcaatg tagatttttt aaatcagcaa
     3781 tttgaaaata cttataaaga atgtaaaagt attttagaac agggattggc tttgcctgct
     3841 tatgattatt gtatgcttgc agctcatact tttaacttgc ttgatgcaag gggtgctatt
     3901 tctgttgcac aaagacaaga ttatatgcta aaaattcgcg agctttcgaa aacttgtgct
     3961 gaaatttata agaaaaattt agatgaaact gattgaaatt tataattttt tagacaagct
     4021 aagccctttt gaaactcaag aaatttggga taatagcggt cttttacttg gaaattttaa
     4081 cgatgaaatt cataatgttt atctaagcct tgatatagat gagcagttga tccaaaatgc
     4141 agaagaaaat tccttattta tcacgcatca tcctttaatt tttaaaggct tgaaggattt
     4201 ggcaaattca gcctatccta gagcttttgt taaggaaatg cttagaaaaa atctttcttt
     4261 aatttctatg catactaatt ttgatcttag ccatttaaat acttatttta tagaagaaat
     4321 tttgggattt gaaatttctt ctaaaaataa atttttagct tatatagatg tagatatgag
     4381 ttttgaagag ctttgtattg tggttaaaaa gcgtttaaat ttagaaattc taagaacaag
     4441 tttttgtgga aaagaatatt tgaaacgctt agctgtttgc acagggagtg ggggagattt
     4501 gttaaatgaa gttaaggcag attgctattt aagtggcgat tttaaatacc atcaagcctt
     4561 agaagccata agcaatcatc taaatttgat tgatttagga cattttgaga gcgaacgtta
     4621 ttttgctcaa tgtttagcaa aacacttgaa aaatttgccg ctaaaagtta taataacagt
     4681 ttcaaaaaat ccatttcaat atttttaagg aaaataaatg aataaatatc tcgaacaatt
     4741 agtgctttta tcaaaaatag atcaagaaat tgacagcttt gaaccgaaga tggaaagtat
     4801 tagcaagact ttaaaagatg ctgaaaataa gattgctaaa tttaatgttg aattaaataa
     4861 tttagaaaat gaaattcaag atgtagaaaa tcaaaaagtt caaaataatg ctcatatttc
     4921 agagttttca gctaaaatca aagagctttc taaaaagagt ggagctgtta agacagaaaa
     4981 agaagcaaat gctttaaaaa tcgaagaaga tatcgctaaa gagcagcttg atgcggctaa
     5041 tgatgagatt gttcgtttgg ataaaatttt agaaaataaa gagcttttca aaaaagaact
     5101 tttggaagaa agagcaaaag aggagcaaaa tttagatgaa ataagagtaa gcattagttc
     5161 tcaaatggat ggcttggaga aagaaagaat gaatgtttat actaaaaaga ctaaattagt
     5221 tgcagagatg aatcaaaaag ttttaagctt ttatgaaaag attagaaaat gggctaaaaa
     5281 tacagccgta gttcccgtta aaaaacaggc ttgttatggc tgctttatga aaatttatga
     5341 taaaacttat ttatcagtga ttaagggtga agagattata acttgtcctc attgtggaag
     5401 aattttatat aaagagcaag aagatcaaaa ttgatttttc tttattatat tttagtgtgg
     5461 atagcttttt tactctgcgc tatcccactt tttttacttt ctttatttaa gccaaaatat
     5521 aaatatagct taaaggctag attttttctc tttcgtaata tatctcaaaa aagatcggat
     5581 gtgcattttc atgtttgctc atatggagaa gcaagaagtg tcaaagagct tgttttaaga
     5641 tttgattcaa gaattacgac tattacacag acgggttatg attatgctaa agaaatttgc
     5701 aataaggtaa attatcttgc ttttgaaaat tggattccat tttggctcaa acctagcaag
     5761 gtattagtga tttttgaagc cgagtattgg ttaatgctcg tttttatagc aaagcttcaa
     5821 aaaagtaagg ttattttgct aaatgctaga atttcagata attcatatgc aagctataaa
     5881 aaatttagat ttttttataa gaaaattttt tgttatatag atgaagtttt tgcacaaagt
     5941 gaggtggata aaataagatt agaagatttg ggtgctaaaa atgttaaaat tttttcaaat
     6001 attaaatcca aattgcaaat atttcctaca caaaaatacc ttaaacctaa gcgaaaattg
     6061 attatttttg caagcactca taagggtgaa gaagaacttt tactcaagca ttataaaatg
     6121 gataaacaag agaaattaat catcgctcca aggcatcctg agcgtttttt agaagtggaa
     6181 caattattgc acgataaagg tttaaaattt gataaattta gtttattgca aaatgaagat
     6241 aaaaaattta atcaagatat tttattatta gattgtttgg gtgagcttgt aaatttttac
     6301 gccatttcag atgtagttgt actgggaggt tctttttttg aggggatagg aggacataat
     6361 cccatagagg tggctcattt taataatgta ttgataagtg ggatttatat acataatcaa
     6421 aaaagtttat ttcaagaagt ggataatgtc tatttttgtg aagacttaaa agaacttgat
     6481 ggtataattc ataattacaa tttaaaagca aaaatagcac aaaataatga tttatcaacc
     6541 ataatacaag ctatacagga aggtattgat gcaagaaaaa gcatataaac ttttagcttt
     6601 gcaagaaaat atttcaaacc gcgaagcaaa agatttgata gataagggtt gcgttttttc
     6661 tcatggtaaa aaggtagttg tagcaagagc tttgatgagt gataagacga aatttagcat
     6721 tgtaaaaact agcaagccta aagtaatttt tgaagatgaa aatatcatag ccataaataa
     6781 accctatgct tatatcagtg aagaacttga aaaaaaattc aatgcaaagt tacttaaccg
     6841 tcttgataaa gaaactagtg gtgttatact gctttgtaaa aatgaagatt ttcgaaaaat
     6901 atgcattgaa gagtttaaaa aacaaagagt ttataaaagc tatatagctg ttttggatgg
     6961 aattttagca gaagaaattg agattgatga gcctatatta accataaaaa ctaagaatgg
     7021 agctttgagc aaaatttcta aagagggttt aagcgcggtc agtattttta ctcctattat
     7081 gatgcaagct aaaaaaactt tggctaaaat tatcattaaa acaggcagaa cccatcaaat
     7141 aagagtgcat gctaaattta tcaagcatgg aattatagga gatgaaaaat atgctaaaat
     7201 ttcaagtgat aggatgtatt tgcatagtca tgaaattcga attttaaatt atcaatttaa
     7261 ggcagaatta gattctagct tttcaaagct tggttttgag ataaaaaatt tagattttta
     7321 aagccattta agaaaagatt ttgtataata ctcaacttaa aatttaaaaa taatagaaag
     7381 gtaataaagt gtttgaatta gtcagcgaat cttttaaatc agcgattaat aaacttcgtt
     7441 ttgttgatga tgaaaaagcg cttaaaaatg ctttagatac cttaaaaaaa gccttactaa
     7501 aagcagatgt acaccataaa gtggttaaag atttgctttt gcttattgaa gaagatgtta
     7561 aaaaaaatgg cataggacaa aagcaatttt tagaagctat taaaaccaat ttagaaaata
     7621 ttttgaatgc tgatggaaaa aatcaaggtt ttgtttttgc tactaagcct ccaactgttg
     7681 ttttaatggt gggtctacaa ggtggaggta aaaccacaag tacggttaag cttgccaact
     7741 atctaaaact tcgcaataaa aaagttttaa tagctgcttg tgatttacag cgtttggctg
     7801 cagtagagca acttaaacag ctttgtgaag ctaatgagtt agatcttttt tatatcgaaa
     7861 atgaaaaaga tccgattaaa gtggcacaac aagctttaga aaaagcaaaa aattctatgg
     7921 cagatgtatt gctagtcgat actgcaggaa gattggctat tgatgaggct ttaatgaatg
     7981 aattaaaagc ggtaaaaaat gttttaaatc cagatgaaat tttctatgtc gctgatgcta
     8041 tgagtggaca agatggtgtt aaaacagcct caagtttcaa tgagcttttg ggtattacag
     8101 gagttatttt atctaaattt gatgcagata ccaaaggggg tatagcttta ggtattacga
     8161 agcaaattgg aatcccttta agatttgtag gcgtgggtga aaagatagcg gatttagaaa
     8221 tttttattcc tgaaagaata gttaatcgta taataggtga aggcgatttg gcaactttag
     8281 ctgaaaaaac tgcggccatt atcgatgaaa aagaggctaa gaaattaaat caaaaaatca
     8341 aaaaaggcga gtttaatttc aatgattttt taactcaaat ggaaagtgtt aaaaaattgg
     8401 gtagtatgaa gtctattata ggaatgatac ctggactttc taatgttgct tcaagtgtaa
     8461 aagatcttga tttggataat tctaaagaaa ttatacatat taaagccatg atttcatcta
     8521 tgacgccaaa agaaagagaa aatccagatt tacttaataa tgctagaaag cgtcgtatag
     8581 cagaaggcgc tggattgtct caagttgaag ttaatcgctt tttaaaacaa tttgcaaatg
     8641 ctgctaaact tgctaagaga ttttcaggaa aaaagggtat ggatagttta atgcaaatga
     8701 tgaatcaagc tagaagacaa ttttagattt tttatctata aatactttta atagtatcta
     8761 tagttaaaaa atttttattt ttaaggagtg tatatgacag taattagact tacaagaatg
     8821 ggaagaacta aaagaccatt ttatcgtata gtagtaacag atagtagaaa acgtcgtgat
     8881 ggcggatgga tagaaagcat tggatattat aatcctatgg ttgagcctga agtggtaaaa
     8941 tttgactctg agcgtctagc ttattggaaa agcgttggtg caaaacttag tgataaagta
     9001 gcttctatta ctagtaaata aatttcatgg tagaaaattt tttaagagaa tacgctaaac
     9061 tcatagcaga ttatccggat aaaattgcaa cagaaaaaat aaagcttgat gaaaattttg
     9121 ctgaaattat actttatgct gataaaattg ataccggtaa gcttatcggc aaaaatggaa
     9181 aaatgatcaa tgcaataaaa acagttgtct cagcttgtaa aagcaaagat tcaatgagtt
     9241 atcgtgtaac ggttaaagca cttgagtgaa agaaatttta ttcaagttgc caaacttgga
     9301 aaaactgttg gacttaaagg gtatttaaaa ctttacaacc taagtgactt tatccagcaa
     9361 tttaaaaaag gagcttcttt tttcactgaa aatggcaaaa gtcagttgaa aattaaacac
     9421 tacaatttag ctaactcttc tgttttgttt gaaggttatg agaatgttga agctgcaaaa
     9481 cagcttatta atctaattct ttatcaaagt attgaagcta caagacaaac ttgcatattg
     9541 aaaaaggatg aattttttta ttttgatatt ttaaaatgcg aagtattcga tgatgagcga
     9601 aggttgggga aagtggtgga tattcttgaa gtaggagatt cttatttatt tgaaattcaa
     9661 agcgatcaag agttaattga taaagcttat gctaaaactt tttttattcc ctatattgat
     9721 aaatatgtca ataaaattga tatagaaaaa tattctattt tttgcaccaa agatgttttt
     9781 ttaatcttag aaaattcatg aagtttagtt ttgtttcttt attccccaat ttgcttgaat
     9841 tttattttaa agattctatt cttgcccgag caattcaaaa agagcttttt caactcgact
     9901 ttttaaaccc aagaaatttt acagataata tttatcataa agtagatgat tataaaattg
     9961 gcggtggagc tggtttgtta atgcaaatta aacctcttta taacacttta aaatttatca
    10021 aagatagtga aaaagatcct tattttattt ttctaaatcc aagtggaaaa actttcaatc
    10081 aaaaagatgc aaaaagatta agcaagaaag aaaatattgt ttttgtttgt gggagatatg
    10141 aaggcattga tgaaagagta atagaaattt ttgctaatga agtgtttagc ataggagatt
    10201 ttattttaac gggcggagaa cttccagcgc ttactctttg tgatgctatt gcaagaaata
    10261 tcaatggagt tttgggtaat gcttgcagcc tggaagagga aagtttcgaa aatgatttat
    10321 tagaagctcc ttcatttgca aaacctttta tttttgaaca aaattttaag aaattttata
    10381 ctccttcaga gtttttaaag ggtaatcacg ctaaaattgc gactttaaaa actactttag
    10441 cgtcttgcaa aacgaaattt tttcgtccag atttattttt agagcatgaa cgcaaaaaat
    10501 aaggaatttt ttatgaaaaa taaatacata gaacaatttg aagcaaaaca aattgaggga
    10561 aaaaatgttc cagaatttcg tgctggcgat actttaagac ttgcaattcg catcaaagag
    10621 ggcgataaaa ctagaattca aaattttgaa ggaatttgta tagctagaag aggtaatggt
    10681 gtagatgaaa cctttatcgt tcgcaaaatg ggtgctaata atgttggcgt agaaagaatt
    10741 tttccaattt atagcgaaag tttagagagt attactgttg taagaaaagg tcgtgttcgt
    10801 cgtgctagat tgttctatct tagagataga cgcggtaaag cagcacgtat taaagaactt
    10861 aaaaaataat ctgcaaaatt attattttgc agattta
//
LOCUS       DBBXRO010000051        10843 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.052, whole genome shotgun sequence.
ACCESSION   DBBXRO010000051 DBBXRO010000000
VERSION     DBBXRO010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10843
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.052"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            14..1117
                     /locus_tag="ACJFEZ_000999"
     CDS             14..1117
                     /locus_tag="ACJFEZ_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HGG0917127.1"
                     /translation="MNLFQKNTLLLLSALFLFSACSKEEAPQKQTPPQSVSTMNAKAE
                     NLPLNFTYPAKLVSDYDVIIKPQVSGVIVEKLFKAGDLIKKGQTLFIIEQDKFKASVN
                     SAYGKALMARANFDNASKDYNRSKTLYNKGAISQKEYDSALANFNNTKANLTSARADL
                     ENARIDLAYTEIKAPFDGIVGDALINIGDYVSSSSTELVRITNLNPIYADFYISDTDK
                     LNIVRNTQDGKWDLSNIYADLNLNGEVVKGKLYFIDSVIDANSGTVKAKAIFDNNDST
                     LLPGAFATITSNGFIQKNGFKIPQIAIKQDQNEVYVFLLKEGKVAKAPVHISYQDNEY
                     AIIDKGLQNGDKIILDNFKKIRLGSEVKEVGAQ"
     gene            1117..4239
                     /gene="cmeB"
                     /locus_tag="ACJFEZ_001000"
     CDS             1117..4239
                     /gene="cmeB"
                     /locus_tag="ACJFEZ_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HGG0917128.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLVNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIATTVANPIEDAINGADNMIYMDSTSSSSGTMNLTVYFNIGTDPD
                     QATIDVNNRISAATAKMPDEVKKLGVTVRKTSSTTLAAISMYSSNGSMSAVDVYNYIT
                     LNILDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGATATDVIAAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQSPSEFENIILRTNEDGSFLRLKDVADVEIGSQQ
                     YKSQGRLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEYKIPYDTTKF
                     VIESIKEVIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHEDEKISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFIPVSFISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFLRRNESKPF
                     YIVQKFNDFFDWSTSIFSAGVAYMLKRTIRFVLIFCIMLGAIFYLYKQVPGSLVPEED
                     QGLMIGIINLPSASALHRTISEVDSMSQEILKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLEDWKDRNVSADEIIMELNKKFAPDRNAASVFRGLPPIPGLSITGGFEMYVQNK
                     SGKSYDQIQEDVNKLVAAANQREELYGVRTTLDTSFPQYKLIIDRDKLKHFNLNMQDV
                     FSTMNATIGTYYVNDFTMLGKNFQVNIRAKGDFINTQNALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNIFPAAQIQGQPAPGYTSGQAIEAISQVAQETLSDDYSIAWSG
                     SAYQEVSSKGTGSYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKKIFDAAIEAAKLRFRPIVM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            4232..5710
                     /gene="cmeC"
                     /locus_tag="ACJFEZ_001001"
     CDS             4232..5710
                     /gene="cmeC"
                     /locus_tag="ACJFEZ_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HGG0917129.1"
                     /translation="MNKIISISVIASLSLFISACSLSPNLNIPEANYSLDNKLGALSW
                     EKENNHTLSKEWWKEFDDEKLNHVVDLALQNNNDLKLAFIHMEQAAAQLGIDFSDLLP
                     KLDGSASANRAKTPTNAPNNRTGGVSYGNDFKMGLDLSYEIDLWGRYRDTYRASRSGF
                     KASQYDYEAARLSIVSSVVQTYFNFVNANENEKALKDAYESAQEIYQINYEKFQVGAV
                     GEYEIAQSRANLESTALQYNEAKLNKENYLKALKILTSNDLNDILYQDQAYQVFKLKD
                     FDIPSGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPNLSLTGLLGFESGDLNT
                     LVEAGSRTWSIGGNFVMPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLVAAFGEIRYAL
                     IARKTIRLQYNNAQASELSYKRIYEISKERYDVGEMSLQDYLQARQDWLNATVAFNNT
                     KYSYANSIVNVIKAFGGGFEQGENISKNIEEESKTLDMSFRE"
     gene            complement(5739..5990)
                     /gene="cmeU"
                     /locus_tag="ACJFEZ_001002"
     CDS             complement(5739..5990)
                     /gene="cmeU"
                     /locus_tag="ACJFEZ_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HGG0917130.1"
                     /translation="MDKTKVVENLNALFKQRAEFYSYFDKNISKVGNTEVFDFSNAKD
                     LNAEEVYKQFYHLDYAMRKLLPAIYKAYEVSDSDLNRDF"
     gene            6115..7425
                     /locus_tag="ACJFEZ_001003"
     CDS             6115..7425
                     /locus_tag="ACJFEZ_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HGG0917131.1"
                     /translation="MNLFQNLALKYSHAMMEKSLHKSFNVELLKNPQEKQAKKDKTYM
                     LYAHIPFCHTFCPYCSFHKYYYDEELAKIYFENLRKELILIKDKGFDFSSMYVGGGTT
                     LINENELLKTLELCKKLFNIKEISCESDPNHIIPEKLSMFKGIIDRLSCGIQSFDDEI
                     LKKIARYNKFGSSKQLQEKISKALGILPIFSLDLIFNFPSQTEEQLLNDLKIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVETKDNEFKYYQMIRNFFKDYQQNNGWSFSLEKNQ
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFDLNDYAKMIQEKQNANIAKASFTRKE
                     IIKYIFLTEMFAGKIQIDKFNQTLNCDLEKELFKELLGLKISNAIKKENGALITSEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDSKRLKNKDFINIMKENISSI"
     gene            complement(7459..7911)
                     /gene="hemJ"
                     /locus_tag="ACJFEZ_001004"
     CDS             complement(7459..7911)
                     /gene="hemJ"
                     /locus_tag="ACJFEZ_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HGG0917132.1"
                     /translation="MTEWINEYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAENKNNK
                     GFVDVVKIQERRLYFGIQNPAMIVTVISGSLMLHAHKEVLMVGSGFMHAKLTCATLLI
                     IFHIHNYFCLKALANDTSTRSGRYFRIYNEFPTLMFIIIALMMVIRPF"
     gene            complement(7895..8365)
                     /gene="lspA"
                     /locus_tag="ACJFEZ_001005"
     CDS             complement(7895..8365)
                     /gene="lspA"
                     /locus_tag="ACJFEZ_001005"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HGG0917133.1"
                     /translation="MVKRYKTILIFILVFIAVFAFDQWVKSLTLSGLRWQSEYLDLTY
                     ALNTGVAFSMFSFLEHYLKYLHLALILALVIYLLWQKQFLREHLVAFGMMLGAGCSNL
                     LDRFIHGGVVDMFFWHKWFHFAIFNVADVMINISVALILIKEIFIKKEKNDRMD"
     gene            complement(8358..9695)
                     /gene="glmM"
                     /locus_tag="ACJFEZ_001006"
     CDS             complement(8358..9695)
                     /gene="glmM"
                     /locus_tag="ACJFEZ_001006"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HGG0917134.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSVTNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYYDDKLIQSSKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALYPSNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALFLKEQGK
                     LKSSVVATIMSNGALKEFLNGHGIELDTCNVGDKYVLEKLKVRGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLCKKKSASTILGQIKPYPQLLTNLKISEKKDLDKIKGLK
                     ELKQDLENKNINVLFRYSGTENLIRLLLEAKDAKILEKEMKNVVEFFKKALNG"
     gene            complement(9791..10816)
                     /locus_tag="ACJFEZ_001007"
     CDS             complement(9791..10816)
                     /locus_tag="ACJFEZ_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HGG0917135.1"
                     /translation="MKVKSLLIASLVAFSSLNAQSLIEEAKNSGLVALPKDQKGVDEI
                     LKANGVKATEFTLDKVELGKKLYFEPRLSKSGIISCNTCHNLGLGGADGISAAVGHKW
                     TANPHHLNSPTVYNAVLNTTQFWDGRAGTLADQAKGPIESEAEMATPAKLAVEKIASL
                     PEYVKEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDNFLNGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDENGMVKTPTLRNVVETAP
                     YFHNGAIWKLTDAIKEMGSVQLGIQISDKEAKSIETFLKSLTGTKPAVVYPQLPVSTE
                     KTPKPEL"
BASE COUNT         3768 a         1858 c         1685 g         3532 t
ORIGIN      
        1 taaggcaaaa atcatgaatt tgtttcaaaa aaataccctt ttactcttaa gtgctttatt
       61 tttattttct gcttgtagca aagaagaagc acctcaaaaa caaacacccc ctcaatccgt
      121 tagtacaatg aacgctaaag ccgaaaattt accgcttaac tttacttatc ctgcaaaact
      181 tgttagtgat tatgatgtta tcatcaaacc tcaagtaagc ggtgttatcg tggagaaact
      241 tttcaaagcg ggcgatttaa ttaaaaaagg acaaacactt ttcattatcg aacaagataa
      301 atttaaagca agtgtaaatt cagcttatgg aaaagcttta atggctagag caaattttga
      361 caatgccagc aaagattata accgttcaaa aactctttat aataaaggag caatctctca
      421 aaaagaatat gatagcgcct tagcaaattt taacaacaca aaagcaaatc tcaccagtgc
      481 tagagcagac ttagaaaatg cacgcattga tttagcttat actgaaatta aagctccttt
      541 tgatggtatt gtaggagatg ctttgattaa tataggagat tatgttagct cctcttcaac
      601 tgaactcgta agaattacaa acctcaatcc aatctatgct gatttttaca tttcagatac
      661 ggataaactc aatatcgttc gcaatactca agatggaaaa tgggatttaa gcaatatcta
      721 tgcagattta aatcttaatg gagaagtagt taaaggcaag ctttatttta tagattcagt
      781 cattgatgca aatagcggga cagtaaaagc taaagcaatt tttgacaata atgactctac
      841 tcttttacca ggtgcttttg caacgattac ttcaaatggt tttattcaaa agaatggatt
      901 taaaattcct caaattgcaa tcaagcaaga ccaaaatgag gtttatgttt ttctcttaaa
      961 agaaggcaag gttgctaaag ctcctgtgca tataagctat caagataatg aatatgctat
     1021 tattgataaa ggactacaaa atggagataa aatcattttg gataacttta aaaaaattag
     1081 actaggtagc gaagttaaag aagttggagc acaataatgt tttctaaatt ttttatcgaa
     1141 agacctgttt ttgcttccgt tgtagccatt atcatctctt tggctggagc tatcggactt
     1201 gtaaatttac ctatagagca gtatccatct ttaacccctc ctacggttaa agtaagtgca
     1261 acctacacgg gtgcagatgc tcaaaccatt gccacaacag ttgcaaaccc tattgaagat
     1321 gccatcaatg gtgctgataa tatgatatat atggattcaa cctcaagttc ctcaggaacc
     1381 atgaatttaa ccgtgtattt taatatcggc acagatcctg atcaagcaac tatagatgtt
     1441 aataatagaa tttcagccgc aaccgcaaaa atgcctgatg aagtaaaaaa actaggagtt
     1501 acagttagaa aaacttcttc tacaacactt gctgctattt ctatgtattc aagcaatggt
     1561 tcaatgagtg cagtagatgt atataattat atcaccttaa atattttaga tgaattaaaa
     1621 agagttccag gtgttggaga cgctaatgct ataggaaatc gtaattattc tttaagaatt
     1681 tggctaaaac ctgacttatt aaacaaattt ggtgcaacag ctaccgatgt tatcgcagcc
     1741 gtcaatgatc aaaatgctca atacgccaca ggtaaaatcg gtgaagaacc tgtaactcaa
     1801 aaatcaccct atgtttattc tatcaccatg caaggaagat tgcaaagccc gagtgaattt
     1861 gaaaatatta tcttaagaac caatgaagac ggttcttttt taagattaaa agatgtagca
     1921 gatgttgaga taggctctca acaatataaa tctcaagggc gattaaatgg aaatgatgca
     1981 gttccaatta tgatcaatct tcaatcagga gcaaatgcac tcaatacagc aaaacttgta
     2041 gaagctaaaa tgcaagaact atcaaagagc tttcctgagg gtttagaata taagattcct
     2101 tatgatacga ctaaatttgt tatcgagtct attaaagaag ttataaaaac ctttgttgaa
     2161 gcgttgattt tggttattat tgttatgtat atgttcttaa agaacttccg ctcgacactc
     2221 atacctatga tcgctgttcc tgtttcattg ctaggaactt ttgcaggact ttatttgtta
     2281 ggatttagta taaatctttt gacattattt gccctaatac tagccatagg tatagtcgta
     2341 gatgatgcta ttattgtggt tgaaaatata gataggattt tacacgaaga tgaaaagatc
     2401 agcgttaaag atgctgccat ccaagcaatg caagaagtaa gttcacctgt aatttcaatt
     2461 gttcttgtgc tttgtgctgt ttttatacct gtgtctttta tttcaggctt tgtgggagaa
     2521 attcaaaaac aatttgcgct cactttggct atatctgtaa ccatatcagg ttttgtagct
     2581 cttactttaa caccttcttt atgtgcactc tttttaagac gcaatgaaag caagcctttt
     2641 tatatcgttc aaaaatttaa tgatttcttt gactggagca cttctatatt tagtgcaggc
     2701 gttgcttata tgcttaaaag aaccattcgt tttgttttga ttttctgtat catgctcgga
     2761 gcaatttttt atctttataa acaagttcct ggctctttgg ttcctgaaga agatcaaggt
     2821 ttaatgatag gtattataaa ccttccttcg gcttcagctc tacatagaac gatctcggaa
     2881 gttgactcta tgagtcaaga aattctaaaa accaatggcg taaaagatgc tatggctatg
     2941 ataggttttg atttatttac aagctcactt aaagaaaatg ccgctgcaat gtttataggg
     3001 cttgaagatt ggaaagatag aaatgtaagc gctgatgaaa tcatcatgga gcttaataaa
     3061 aaatttgccc ctgatcgcaa tgctgcaagt gtatttagag gattgcctcc tatacctggg
     3121 ctaagtatca cgggtggttt tgaaatgtat gtgcaaaata aaagcggaaa aagctacgat
     3181 caaattcaag aagatgtaaa taaacttgta gcagcagcca atcaaagaga ggaattatat
     3241 ggggttcgaa ctactcttga tacgagcttt cctcaatata aactcatcat tgatagagat
     3301 aaactaaagc attttaattt aaatatgcaa gatgttttca gtacaatgaa tgcaaccatt
     3361 ggaacatatt atgttaatga ttttactatg cttggtaaaa attttcaagt caatattcgc
     3421 gcaaaaggag attttataaa tacccaaaat gcattgaaaa atatttttgt gcgctcaaat
     3481 gatggaaaaa tgataccact tgactctttc ttaactctac aaagaagttc agggccagat
     3541 gatgtaaaac gttttaatat tttcccagca gcacaaatac aaggacaacc tgctccagga
     3601 tacacttcag gacaagccat agaagcgatt tcccaagtag cacaagaaac tttaagtgat
     3661 gattactcta tagcttggag tggttcagcc tatcaagaag tttcaagcaa gggaacaggg
     3721 agctatgcct ttgctttggg tatggtgttt gtattcttaa tcctagcagc acaatatgaa
     3781 agatggctta tacctttagc tgttgttaca gctgtacctt ttgccgtttt tggttcgttt
     3841 ttacttgtat acttaagagg atttactaat gatatatatt ttcaaaccgg actcttactt
     3901 ttaattggac tttcagctaa gaatgctatt ttgatcgttg aatttgctat ggaagaacgc
     3961 tttaagaaag gtaagaaaat atttgatgca gctatcgaag ctgcaaaact tcgctttagg
     4021 ccgatagtta tgacttcttt agcttttact tttggggttt taccaatgat ttttgcaact
     4081 ggagcaggaa gtgcttcaag acattcttta gggacagggc ttattggtgg aatgatagct
     4141 gcttctactt tagctatatt ctttgtacct ttatttttct atcttttaga aaatttcaac
     4201 gaatggctag ataagaaaag gggtaaagtt catgaataaa ataatttcaa taagtgttat
     4261 agcaagctta agccttttta tttcagcttg ttctttaagt ccaaatttaa atatcccaga
     4321 agcaaattat agtcttgata ataaactggg cgccctatct tgggaaaaag aaaacaatca
     4381 tactctttct aaagaatggt ggaaagaatt tgatgatgag aaattaaatc acgtagttga
     4441 tttagctctt cagaacaata atgatttaaa acttgctttt attcatatgg aacaagctgc
     4501 tgcccaatta ggcatagatt ttagtgattt attaccaaaa ttagatggta gcgctagtgc
     4561 aaatcgtgca aaaacaccta caaatgctcc aaacaaccgc actgggggag taagctatgg
     4621 caatgatttt aaaatgggac tggatttaag ctatgaaatt gatctttggg gaagataccg
     4681 cgatacttat cgcgcttcaa gatcaggctt taaagccagt cagtatgatt atgaagctgc
     4741 gagactttct atagtttcaa gcgtggttca gacttatttt aattttgtaa atgcaaatga
     4801 aaatgaaaaa gctttaaaag atgcttatga atctgcacaa gaaatttatc aaattaatta
     4861 tgaaaaattt caagtaggag cagtaggaga atacgaaatc gcgcaatcaa gagcaaattt
     4921 agaaagtact gctttacaat acaatgaagc aaaattaaat aaagaaaact atcttaaagc
     4981 tttaaaaatt ctaacttcaa atgatttaaa cgatattctt tatcaagatc aagcttatca
     5041 ggtttttaaa ctcaaagatt ttgatatacc gagcggaatt tcaagcacta tactcttgca
     5101 gcgtcctgat attggatctt ctttagaaaa acttactcaa caaaattatc tagtaggagt
     5161 agctcgcaca gctttcttgc ctaatctttc tttaacaggc ttattaggat ttgaaagcgg
     5221 ggatttaaat acacttgtgg aagcgggctc taggacttgg agtataggtg ggaatttcgt
     5281 aatgccaatt ttccactggg gagaaattta tcaaaatgtg aatttagcaa aactcaacaa
     5341 agatgaagct tttgtaaatt atcaaaatac cttagttgca gcttttggag aaattcgcta
     5401 tgctttaatt gcaagaaaga ctattcgctt gcaatacaat aacgcacaag caagcgaatt
     5461 atcctacaaa agaatttatg aaataagtaa agagcgttat gatgtgggcg aaatgtcttt
     5521 gcaagactat ctacaagcgc gtcaagactg gttaaatgct acagttgctt ttaataatac
     5581 caaatattct tatgctaatt ctatagtcaa tgttatcaaa gcttttggtg gcggatttga
     5641 acaaggtgaa aatatcagca aaaatataga agaagaatca aaaactttag atatgtcctt
     5701 tagagagtaa aacttactct ctaaattaga gcttattttt aaaaatctct atttaaatca
     5761 gaatcactaa cctcatatgc tttataaata gctggtaata attttctcat cgcataatct
     5821 aaatgataaa attgcttata aacttcctct gcatttaagt ccttagcatt gctaaagtca
     5881 aatacttcag tattgccaac ttttgaaata ttcttatcaa aataagaata aaattccgcc
     5941 ctttgtttaa acaatgcgtt taaattttct actacttttg ttttatccat aagccatcct
     6001 ttctaattat tttgaaagtt atagcatttt tttgctaaaa ataaaaaaaa tttacacttg
     6061 atttaataaa aaattgataa agttatatta tattttctac tttaaggtgg gttaatgaat
     6121 ttatttcaaa atttggcttt aaaatattct catgctatga tggaaaaatc tctacataaa
     6181 agtttcaatg tcgaactttt gaaaaatcct caagaaaaac aagccaaaaa agataaaact
     6241 tatatgcttt atgctcacat acccttttgc catacctttt gtccttattg tagttttcat
     6301 aaatactatt atgatgagga attggctaaa atttattttg aaaatttaag aaaagagctt
     6361 atacttataa aagataaagg ttttgatttt agctcaatgt atgtaggggg cggaacaaca
     6421 ttgattaatg aaaatgaatt actaaaaact ctagaacttt gtaaaaaact tttcaatatc
     6481 aaagaaattt cttgcgaaag cgatcctaat catataattc ctgaaaaact ctctatgttt
     6541 aaaggtataa tcgatcgttt aagctgtgga attcaaagtt ttgatgatga aattttaaaa
     6601 aaaatagcaa gatataataa atttggttct tctaaacaat tacaagaaaa aatttcaaaa
     6661 gctttgggaa ttttgccaat ttttagcctt gatttaattt ttaatttccc ctcacaaaca
     6721 gaagaacagc ttttaaatga tttaaaaatc gctaaaaatt tagctcctca acaaatcaca
     6781 acctatcctt taatgaaatc caatctaacc aaagacaata tagccaaaag tcttggtgtt
     6841 gaaactaaag ataatgaatt taaatactat caaatgatac gaaatttttt caaggattat
     6901 cagcaaaata atggctggag tttttcttta gaaaaaaatc aactcaatga tgaatatgta
     6961 agctctcacc atgaatattt aggcgttgga agtggagctt ttagcttttt agatggggag
     7021 ttgcttatca atgcttttga tttaaatgat tatgcaaaga tgatacaaga aaaacaaaat
     7081 gccaatatag caaaagcgag ttttacacga aaagagatta tcaaatacat atttttaact
     7141 gaaatgtttg cagggaaaat acaaattgat aaattcaatc aaacccttaa ttgtgatctt
     7201 gaaaaagaac tcttcaaaga acttttagga cttaaaataa gcaatgctat caaaaaagaa
     7261 aatggcgcct taatcacaag tgaatttgga cagtatctct ttgtggtctt aatgaaggat
     7321 ttttacacag gaatggatct tgtgcgcgcg gtatttagag atagtaagcg cttaaaaaat
     7381 aaagatttta tcaatataat gaaagaaaat ataagttcta tttaatttct tttttttgaa
     7441 attaaataga aatgaaaatt aaaacggacg aatcaccatc attaaagcaa tgataataaa
     7501 cattaaagta ggaaattcat tataaattct aaaatatctt ccgcttcttg tagaagtatc
     7561 attcgccaaa gcttttaagc aaaaataatt atgtatatga aaaatgatta aaagcgtagc
     7621 acaggtaagt tttgcatgca taaagccaga acccaccatc aaaacttctt tatgagcatg
     7681 taacattaaa ctcccactaa taaccgttac tatcatcgct ggattttgta taccaaaata
     7741 aagtcttctt tcttgtatct ttacaacatc aacaaaacct ttattgtttt tattttctgc
     7801 atgatataca aacaaacgag gcaaataaaa aagtcctgcc atccaagaaa caaatgctaa
     7861 ataatgcacc catttaatcc aaaaataata ctcattaatc cattctgtca tttttttcct
     7921 tttttataaa aatttctttt attaagatta aggcaacgct tatgtttatc atcacatctg
     7981 ctacattaaa aatagcaaaa tgaaaccatt tatgccaaaa aaacatatcc actactcccc
     8041 cgtgtataaa acggtcaagc aaattcgaac accccgcccc tagcatcata ccaaaagcca
     8101 ctaaatgttc tcttaagaat tgtttttgcc acaaaaggta tataacaagc gccaatatca
     8161 aggctaaatg taaatatttt aaataatgct ctaaaaaact aaacatagaa aaagcaactc
     8221 ctgtgtttag agcataagtt aaatccaaat actcactttg ccaacgcaaa cccgataaag
     8281 ttaaagattt tacccactga tcaaaagcaa aaactgcaat aaaaactaaa atgaagatca
     8341 agatagtttt atatctttta accatttaat gctttcttga aaaattcaac tacatttttc
     8401 atttcttttt ctaaaatttt agcatcttta gcttctagta aaagtctgat caaattttct
     8461 gttccagaat agcgaaataa cacattaata tttttatttt ccaaatcttg ttttaattcc
     8521 ttcaaacctt taattttatc caaatctttt ttttctgaaa ttttaagatt ggttaaaagt
     8581 tgaggataag gtttgatttg tcctaaaata gtacttgcgg actttttctt gcaaagcatc
     8641 aaagcactaa attgcaaagc tgctataaga ccatcgcctg tttttgcata atcgctaaaa
     8701 ataatatgcc cactttgctc tccgccaaag tttccacccc taacttttaa tttctcaagt
     8761 acatatttat cgcctacatt acaagtatcg agctctatgc catgtccatt taaaaattct
     8821 ttcaaagccc cattgctcat gatagtagct accacactgg attttaattt gccctgttct
     8881 tttaaaaaaa gagctaaaac tccaagcagg ctatctccat ttgctacttc acccttttca
     8941 tctaccacta ccaaacgatc cgcatctcca tcaaaagcaa aaccaacatc tgcacgcaaa
     9001 cgctttactt cagcggctaa atttgaagga tacaaggctc cacaattttc attgatatta
     9061 agcccattag gtttatcact catcactata acttcagctc ccagttcttt aaaaacagtc
     9121 ggagctacct tataagccgc tccatgagct acatctaaaa ctacacgcaa tgattttaga
     9181 gttaaatcct tagggaagga attcttaata gaaacaatat atcttcctat aacatcatca
     9241 attcttttag cttggccaat tttctccata tcaactttag agctttggat aagcttatca
     9301 tcataataaa tttcttcaat ctttttttct atatcttcgc taagcttatt cccatgtgca
     9361 tcaaaaaatt taatcccgtt atcataataa ggattgtgtg aagctgaaat cataataccc
     9421 gcatcacaac gcatatcttc agttaaaaat gcaattgcag gtgttggcat agggcctatt
     9481 tgtatcacat tatatcctat agaagtaaga cctgaaacaa tagcattttc tatcatataa
     9541 ccacttcttc ttgtatcttt acctactaaa atattatttg taacactctt atctttaaaa
     9601 taaattccag cggccatagc aagacgcata gctaaaaaac tatctaaaaa ttcgcccgct
     9661 tttccacgaa cgccatctgt cccaaaaagt ttcatcatta aacctttctc aatgaaattc
     9721 tagaaattat agcaaagcta ggataaagaa atttaaacaa accctaaaaa gatttagggt
     9781 ttgataagcc ttatagttca ggctttggag ttttttctgt agaaacaggg agttgaggat
     9841 aaaccactgc tggtttagtt ccagttaaag attttaagaa agtttctata ctttttgcct
     9901 ctttatcaga aatttgaatg ccaagttgca cactacccat ttctttaatt gcatcggtta
     9961 atttccatat cgcaccattg tggaaatatg gagctgtctc aactacattt cttaaagttg
    10021 gagttttaac cataccattt tcatctcctt taaaatcacc caaatttgca aatttatact
    10081 tacctgcaac ctcaaatgct tgcatatttc cacctaaatt cacaccatta tgacaagcta
    10141 cacaaccttt gtcaatgaaa agttttaaac ctttttgctc ctctttagtt aaagcttttt
    10201 catctccatt taagaaatta tcaaagcgag atggagtgat taaagttctt tcaaaatttg
    10261 ctatcgcatc agcaatattg tcaaaattca caccgctttt gccataaatt ttcttaaatt
    10321 ctttaacata ttcaggtaaa gaagcgattt tttctacagc taattttgct ggagttgcca
    10381 tttcagcttc agattcaata ggtcctttgg cctgatccgc taaagttcct gcacgcccat
    10441 cccaaaattg agtcgtgttt aaaacagcat tatatacagt tggggaattt aaatgatgag
    10501 ggtttgcagt ccatttatgt cccactgccg cactaatacc atcagctcca ccaagtccta
    10561 gattgtgaca ggtattacat gaaataattc cactttttga aaggcgaggc tcaaaataaa
    10621 gttttttacc aagctcaact ttatcaagag taaattcagt agcctttact ccatttgctt
    10681 tcaaaatctc atccacgcct ttttgatctt ttggtaaggc aactaaacct gaatttttag
    10741 cctcttctat aagactttga gcatttaaac ttgaaaaagc aactaatgat gcaatcaata
    10801 acgatttgac tttcatttac aaactccttt acttttagat ata
//
LOCUS       DBBXRO010000052        10379 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.053, whole genome shotgun sequence.
ACCESSION   DBBXRO010000052 DBBXRO010000000
VERSION     DBBXRO010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10379
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.053"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..380
                     /gene="exbB"
                     /locus_tag="ACJFEZ_001008"
     CDS             <1..380
                     /gene="exbB"
                     /locus_tag="ACJFEZ_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HGG0917136.1"
                     /translation="GVMAFIAFWCVIERVLFFRKIDFKNYENQEQFDDAISENLTTIY
                     IIYSNAPYIGLLGTVVGIMITFYEMGIAGNIDVKSIVVGLSLALKATALGLLVAIPAL
                     MAYNALLRKVSLLSNAYKVSKNA"
     gene            373..762
                     /gene="exbD"
                     /locus_tag="ACJFEZ_001009"
     CDS             373..762
                     /gene="exbD"
                     /locus_tag="ACJFEZ_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HGG0917137.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIILSISTFIAHGKIEINLPV
                     SENALSLNNDEKKLSISIDENNIFYLDDKTTDLKGLSDAISSLHKKTIVELKSDKNAK
                     FESFVQIIDLLKAKEHENFQIITEKNR"
     gene            complement(987..1859)
                     /locus_tag="ACJFEZ_001010"
     CDS             complement(987..1859)
                     /locus_tag="ACJFEZ_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917138.1"
                     /translation="MKIDTSIRPLTIQTDKKELSVLKKEDEDKVKVKDISDNQISGFK
                     VVFENKKGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANEFIANWFENI
                     EDNFNSLSSNLSSNTQDKNIKLNFHTNTITQSMQNLGFKSNDEKIPNDASMEKKLNFF
                     IDKDRDKNGKIDDNDVKEPSIGEILNDISKISGRANAMQTIDPQKIYKKDDSGVTIKE
                     KDEKDDKDLLEIAKEKGLSALSADEQAKLKASNPQIFEELQNKSLGNLEQNLKKDLMV
                     QISNNEAIFVNKRV"
     gene            complement(1863..2024)
                     /locus_tag="ACJFEZ_001011"
     CDS             complement(1863..2024)
                     /locus_tag="ACJFEZ_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917139.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKICRL
                     GLFAKCKKG"
     gene            2119..3102
                     /locus_tag="ACJFEZ_001012"
     CDS             2119..3102
                     /locus_tag="ACJFEZ_001012"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HGG0917140.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENELLRNLKTPKYEVIELGDLIGAYSLLSAN
                     ADEKDLELALKIALTYTKHEANKSYELRFKDKSYKSIAFEDKKEINPFFIS"
     gene            complement(3105..4757)
                     /locus_tag="ACJFEZ_001013"
     CDS             complement(3105..4757)
                     /locus_tag="ACJFEZ_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HGG0917141.1"
                     /translation="MKFLKIIFLLMSFICLLQADDSAKTLNLLDKRQQQLHIQKEFDE
                     LEKKQQQEKDVYLENQDSEDKIYIFKQIQFKKNDTLTMQANNILKKYINQPLSVNDIY
                     NMIKELTNFIVAKGYSTSSVTIDELDQERDILFLDLKYGFVGEVYLNGDNNTTRLDFG
                     MPLKKGDKFNIYDLDTGIENLNNGARDVKIAVKASENYGYSDIFINLKSKPPDLILDF
                     DNSGYKAKGEYKASAYLSLSNILNLNDSIRFGFIKGLLKDMSQERENVYVANYTLPIQ
                     SYQLSYSMQYSDNINMIEGYDNSFIKNTDTSLRHKIMLKKILHRTSKDKFSIYANLGI
                     KDDVNEIDNFRLESSSGRYSSIASGVEYSTLAFGGFLFLNLEYEKGIPFLGSKKDSKD
                     SLYKIEFNKVNFNLSYQKSFYANDGLAFLYQNSLGASYSNEPLLYADKFLIGDEYTVR
                     GFKESSAALDYGAYSNNTIYLQFLNAPKYLRALKPFVGLDMGYGRDYLLSNKDFLAGV
                     AFGFRYNLNHLSLNLTASKALHKSSNMPSETIPIYLRASVFF"
     gene            complement(4758..7712)
                     /locus_tag="ACJFEZ_001014"
     CDS             complement(4758..7712)
                     /locus_tag="ACJFEZ_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HGG0917142.1"
                     /translation="MYANALQSNTKLSEEEIKKLLENGAKYANENGLNLGQGLAKNQA
                     VDQDMILYVTIKQNGKNIMAPMLYLSKETIGNDEIKSNLTGKTGVDINTQSFNSLLGD
                     IASEGQININAGNEINLQSSNLNAQNINLSANNVNIDTVLGIDEKGSYNSIKKGEIKA
                     NNVVNIDSVNDLNIKNSDISTSANDSKIVLISQKGDVNIKNDYSKSSSFEQINTDSQK
                     SNTTTSIDGVLSTNIKGANVGIVSNQDVNIIASNINADSKIDINANNVNIKDAHELSK
                     TKTDGVYLKPVEISYESANLETSKSISSTLNSKGDININTNGNIAITGSTLQADKSAN
                     LNGENITIENGENKISSSSHSSTSSIAGYKQSSVNTDASLVSSSQIQSDILNLNAQKN
                     VSIKGSELNGGEIDIKADKVDFIAAQNKTHTESDSIAIGVFANANLELTGNGVAVNYS
                     FVQDKANANTTNSSNSITQGGVRSDLLGTAEAGLEFSKTEKISDELSHVSNTIKGSNI
                     NINANNALDIGGANFEANKDINLRAGEIVSTKYEDIKTQSSTGFGLYIKERIEATSPI
                     ASAINQSAQNAAAKNENLGVNYGIVASQALANTANIFSNNLINTTSNQTLGFKFNQDK
                     SQSSSENISKINAGDNLNLESTKGSIVLNGVEAKANSINIEAKDNVILNAAKSKNSSS
                     SSSLEIAATNKQTAGYHAVDGGTVGEGIEGFASASYSKSNETQFTNANLNANNININT
                     GKDFTLNGANVKASNDAILNVGGNLEVNSLADSLNSQKYSALLNASGTGGLSSNHLVT
                     RSVSGTLGIGYAKTDKTTVTTQSGISAGNEINGHVNGNLNLQGGILNSDNQKGNLLVD
                     GKVTNSEVSVYEKSDGATIRLSGGTNQSFGGVVDIDDHIDKTGSVNSAANININNNKN
                     HGISTDTQNITDTQDHSWAGGTINLNSSISKIKNGISKVTGSDSTSNQPSNQPSKSDG
                     PYINESTQTTRL"
     gene            complement(7676..8668)
                     /locus_tag="ACJFEZ_001015"
     CDS             complement(7676..8668)
                     /locus_tag="ACJFEZ_001015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin activation protein"
                     /protein_id="HGG0917143.1"
                     /translation="MLETSTEYSQGFGQVGYGDTAFKRWNMEVGVTGIVKYNNLLDSK
                     QASIQAGKDININTQSQDNARQINNSGKILAQGNIVSFGNIDNKSLSKEISVGEILEQ
                     IRVNGFFAKEYLGSWNTNSTYYFVDHESLLDALKYFSTTQAKNHQRESAWNALKDAAA
                     KNSALNQYFSLLFGSDYASKRFVPDQKEWNLDAKIVFKAKSEAVIASKGKLDLNAKEY
                     NQDLVSSLDKNFALLDSDLKKATNSQDLILNSIPDLINSGLFTLENKTNDNITYEYTT
                     NTSIIDESKYFGFLSILNQFKNKNFNEFIVIGDPFLKISLLTQCMQTHYNPILN"
     gene            complement(8692..9831)
                     /locus_tag="ACJFEZ_001016"
     CDS             complement(8692..9831)
                     /locus_tag="ACJFEZ_001016"
                     /inference="COORDINATES: protein motif:HMM:NF017658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917144.1"
                     /translation="MVDGDYFNVISCGIDLAGSIAHYQSGKNLSDINFIAGLNKVDLS
                     TPNAPKIIASKQKDEKNDYGIDGKYLGSMYANTVTLISTEEGVGVRHSGVIRGIEDVI
                     VKVKDKAEFQAIGVNTNGSVKIDAKDIKTSLINADTIDLKASGKVTNEGLYKGKQIQI
                     NANNFENAKQTNLSQETKDIFKINQENSSIFADSLTLNTLDKTSNFGFINALNDIKVG
                     TNSFDNQGEISANKDISLMLNDDAFINNGKILSQNDIQIQANKDLTLNHGNLYAQNLL
                     HIKSLNDLNINSKLENTSSIELDAKNIYVKNLVASGKELNLHADENLVNDAYLFSNGD
                     LRAQATTLTNNSTFNSLNNLYLNAHTIHNNALIFADKVSISRQIF"
     gene            complement(9831..10379)
                     /locus_tag="ACJFEZ_001017"
     CDS             complement(9831..10379)
                     /locus_tag="ACJFEZ_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HGG0917145.1"
                     /translation="MEFSKKKIVRLSLNLTLLGALFPCVLFSADLRQRNGNVIVSRTT
                     DLTQSSNKTDVINIKNPNQNGVSHNQFDEFSVQDGVIFNNSLKDGNSQIGGWVGKNPN
                     LKQNANTIINEISSKQASNINGAVEVFGKSANLIFANENGFSVNGAAFLNTKGVTLST
                     GKFNGDFTEVTSNGRVAIEEKG"
BASE COUNT         3375 a         1739 c         1392 g         3873 t
ORIGIN      
        1 taggagttat ggcatttata gctttttggt gcgtaattga aagagtatta ttttttagaa
       61 aaatagattt taaaaattat gaaaatcaag agcaatttga tgatgcaatt agcgagaatt
      121 taactaccat ttatattatt tattctaacg ctccctacat aggactctta ggaactgttg
      181 tagggattat gattactttt tatgaaatgg gaatagcggg aaatatcgat gtcaaatcca
      241 tagtcgtagg actttcttta gctcttaaag ctacagcttt aggactttta gtcgccatac
      301 ctgccttaat ggcttataat gccttacttc gcaaggtttc acttttaagt aatgcttata
      361 aggtgagtaa aaatgcttaa attgcctaaa aatgaagggt taaatatagt tcctttcata
      421 gatataatgc ttgttttact tgctatcatt cttagtattt caactttcat tgctcatggc
      481 aaaattgaaa tcaatctacc cgttagcgaa aatgctctaa gtcttaacaa tgatgaaaaa
      541 aaattatcca ttagcattga tgaaaacaat attttctatc tagacgataa gactacagat
      601 ttaaaaggct taagcgatgc tatttcttcg cttcataaaa aaactatagt agaattaaaa
      661 agtgataaga atgcaaaatt tgaaagcttt gttcaaatca ttgacttatt aaaagctaaa
      721 gagcatgaga atttccaaat tataacagag aaaaatagat gaaaaatact ttgtcaaatc
      781 acaaatcaca agctttttat atatcttttt tcttagctct tctgctaatt tttgaaaaat
      841 agaattaaat agctttgctt tgactctaaa acaatctata acttaaacta atcacaaaag
      901 ctaaaaaacc tgatacaaaa ctaataagag cgcttaatct acacccaaaa gtaaatacta
      961 taaatatttc atttattttt aaatttttac actcttttgt tcacaaatat ggcttcatta
     1021 ttacttattt gcaccattaa atcttttttt aaattttgct ctaaattccc taaagactta
     1081 ttttgaagtt cttcaaaaat ttgtggatta cttgctttaa gtttggcttg ctcatctgca
     1141 ctcaaagcac ttagtccttt ttctttggca atttcaagca aatctttatc gtctttttca
     1201 tctttctctt taattgtgac cccactatca tcttttttat aaatcttttg tggatctata
     1261 gtttgcatgg cattagctct acccgatatt ttgcttatat cgtttaaaat ttctccaatg
     1321 ctaggctctt taacatcatt atcatcgatc ttgccatttt tatccctatc cttatctata
     1381 aagaaattta attttttctc catgcttgca tcattgggta ttttttcatc atttgattta
     1441 aagcccaaat tttgcatact ttgagtgatt gtatttgtat gaaaatttaa ttttatattt
     1501 ttatcttgag tattagagct taaatttgaa cttaaagaat taaaattatc ttctatattt
     1561 tcaaaccaat tagcaataaa ttcatttgct tcgccattaa gccttatact tccatcattt
     1621 cgagcaacat aatttgtata agagccaaaa ttcttttgca agctactata attttcatca
     1681 ctcaaattta aggctataag ctcacctttt ttgttttcaa aaactacctt aaaacctgaa
     1741 atttgattat ctgaaatatc ctttacttta actttatctt catcttcttt ttttaaaaca
     1801 cttaattctt ttttatctgt ttgtatggtt aaagggcgaa tactggtatc aattttcatc
     1861 ttttatcctt ttttacattt tgcaaataaa cctaaacgac atatttttct ctcatgtgaa
     1921 ttttttaaag aattacactt tttaagttcc tgctcgtagt tagcacaaga atttgcaaaa
     1981 gcaaaagaac tcaaaatgct taaaaccaaa attattttta acactttcca atccttattt
     2041 taaagatttt ttagttaaaa ttatatcttt tataatcgac aaaatcttaa aaaattttat
     2101 aatctcagaa aggaatcaat gaaagcatta gctcttttta gcggtgggct tgatagtatg
     2161 cttgcaatga aactcatcac tgcacaaggc atagaagtta aagctctaaa tatcaacata
     2221 ggctttggaa gcacaagcga taaaagtgaa atcatgaaaa agcgtgcagc gatggtaggt
     2281 gcagattttg aaatgataga tgtaagaaat tcctatcttc aagaagtgct ttttaatcca
     2341 caatatggct atggcaaaca ttttaatcct tgtatagatt gtcatgcttt tatgtttaaa
     2401 actgctcttg ctatgttaaa agaagaaaat gcaagtttta tcatcacagg agaagtttta
     2461 ggacaacgcc ctatgagtca aagaagtgat gcgatggcaa aggttaaaaa acttgctctt
     2521 gatgaagaag atttaatctt gcgtcctatg tgtgcaaaaa acctacctct aaccaaacct
     2581 gaaagagaag gttgggtaga tagagaaaaa ctcgaaggta ttattggaag aagtcgtaaa
     2641 agacaacttg aacttgcagc taaatttggc ttagaagact ttgaaagtcc tggaggagga
     2701 tgcttgctca cgcttgatag ttttgctaaa aaaattcgcg actttataga atttgataaa
     2761 gatatgcaag taaatgatgc gcaactttta aaatacggac gccatttaag actgcctaat
     2821 ggagctaaaa tgatcatagg tagaaatgaa ttagaaaatg agctgctaag aaatttaaaa
     2881 acacccaaat atgaagtgat agaacttggg gatttaatcg gtgcttattc tttacttagt
     2941 gcaaatgcag atgaaaaaga tttagaactc gccttaaaaa tcgctctaac ttacaccaag
     3001 catgaagcaa acaaaagcta tgaacttcga tttaaagata aaagctataa aagtatagct
     3061 tttgaggata aaaaagaaat caatccattt ttcatttctt aaacttaaaa aaatacagaa
     3121 gccctgagat aaataggaat cgtttcgctt ggcatattcg aagatttatg cagggcttta
     3181 gaagctgtta aatttaaaga aagatgattt aagttgtatc taaaaccaaa ggcgacaccg
     3241 gctaaaaaat ctttattgga taaaagataa tccctaccat aacccatatc caatccaaca
     3301 aaaggcttta atgctcttaa atatttaggc gcatttagaa attgcaaata aatcgtattg
     3361 ttactatatg ctccataatc aagagcagca gagctttctt taaatcccct aactgtgtat
     3421 tcatcaccga ttaaaaattt atcagcatac aataagggtt cattagaata actcgcaccc
     3481 aagctgtttt gatataaaaa tgctaggcca tcatttgcat aaaaactttt ttgatagctt
     3541 aaattaaaat tgactttgtt aaattcgatt ttatataaag aatctttaga atctttttta
     3601 gaacccaaaa atggaattcc tttttcgtat tctaaattta aaaacaaaaa tccaccaaat
     3661 gccagcgttg aatactcaac cccgctagca atacttgaat acctaccact tgaactctct
     3721 aaacgaaaat tatcaatctc attaacatca tctttaatgc ctaaattagc ataaattgaa
     3781 aatttatcct tgcttgtgcg atgtaaaatc ttttttaaca tgattttatg tcttaagctt
     3841 gtatctgtat tttttataaa agaattatca tatccctcaa tcatatttat attatcacta
     3901 tattgcatag aataagacaa ttgataactc tgtatgggca aggtataatt tgccacataa
     3961 acattttctc gctcttgact catatctttt aacaatcctt tgataaaacc aaagcgtatg
     4021 gagtcgttaa gatttaaaat attacttaaa gaaagatagg cactagcttt atattctcct
     4081 ttagctttat agccactatt atcaaagtcc aatatcaaat caggtggctt tgatttaaga
     4141 ttgataaata tatcagaata accataattt tcactcgctt taacagcgat tttaacatct
     4201 cttgcgccat tgtttaaatt ttctatacct gtatctaaat cataaatatt gaatttatca
     4261 ccctttttca aaggcatacc aaaatctaat cttgttgtat tattatcccc attaagatat
     4321 acctctccta caaaaccata ttttaaatca agaaaaagta tatcgcgttc ttgatcaagc
     4381 tcatcaatgg ttacactaga agttgaatag ccctttgcaa cgataaaatt tgtaagctct
     4441 ttaatcatat tataaatatc attaacactt aaaggctgat taatgtattt ttttaaaata
     4501 ttatttgctt gcatggtaag cgtatcgttt ttcttaaatt gaatttgttt gaaaatataa
     4561 attttatctt cagaatcttg attttctaaa tacacatcct tttcctgctg ttgctttttt
     4621 tctaattcat caaattcttt ttgtatatgt aattgttgtt gtcttttatc tagtaaattc
     4681 agcgtttttg cagagtcatc tgcttgcaat aagcagataa aactcataag caaaaaaata
     4741 atttttaaaa atttcaccta taaccttgta gtttgtgtgc tttcattgat ataaggtcca
     4801 tctgatttag aaggttggtt tgatggttga ttagaagtag aatcagatcc agtaaccttg
     4861 cttatcccat tttttatttt agagattgaa gaattaagat ttatagtacc tcctgcccaa
     4921 gaatgatctt gtgtatctgt gatattttga gtatctgtac ttataccatg atttttgtta
     4981 ttgtttatat tgatattggc tgcagaattt acactgcctg tcttgtcaat atgatcatct
     5041 atatcaacca ctcctccaaa gctttgattt gtcccgccac ttaatcttat cgtagcccca
     5101 tcgctttttt catagacact tacttcagaa tttgtaactt ttccatcaac aagtaaattt
     5161 cctttttgat tatcagaatt taaaattccc ccttgcaaat ttaaatttcc attaacatgg
     5221 ccattgattt catttcctgc actgatacca ctttgagttg taacagttgt tttatctgtt
     5281 ttagcatatc ctatacctaa agtgcctgaa acacttcttg taacaagatg attgcttgat
     5341 aagcctccag ttcctgatgc attcaataaa gcgctatatt tttgagaatt aagactatca
     5401 gctaaagaat ttacttccaa atttccgcct acatttaaaa tagcatcatt agaagcttta
     5461 acattggctc cattgagtgt aaaatcttta cctgtgttga tattgatatt attagcattt
     5521 aaattcgcat tggtaaattg cgtttcgttt gatttagaat acgacgcact tgcaaaacct
     5581 tcaatgcctt cacccacagt tccaccatca actgcatgat atcctgcggt ttgcttgtta
     5641 gttgctgcaa tttccaaaga agagctagaa gaagaatttt tagattttgc agcatttaaa
     5701 ataacattat cttttgcctc gatattaatg ctattagcct tagcttccac tccatttaaa
     5761 acaatacttc cttttgtgct ttctaaattt aaattatcgc ctgcattgat tttagaaata
     5821 ttctcgctag aactttggct tttatcttga ttgaatttaa aacctagagt ttgattagaa
     5881 gtggtattta tgagattgtt gctaaatata ttagcagtat tggctaaagc ttgagaagct
     5941 actattccat aatttacgcc taaattttca ttcttagcag ctgcattttg agccgattga
     6001 ttgatagcag aagcgatagg actagtagct tcaattcttt ctttaatata caaaccaaag
     6061 cctgtactgc tttgtgtttt aatatcttca tatttagtac taacaatctc tcctgctctt
     6121 aaattaatat ccttattagc ctcaaaatta gctccaccta tatctaaagc attatttgca
     6181 ttgatattaa tatttgaacc tttgatagta tttgaaacat gggaaagctc atcacttatt
     6241 ttttccgttt tagaaaattc caaaccagcc tctgcagttc ctaaaagatc agatcttacc
     6301 ccaccttgtg tgatactatt agaactattt gtggtattag catttgcttt atcttgcaca
     6361 aaactataat ttacagcaac cccatttccg gttaattcca aattagcatt agcaaaaacc
     6421 ccaatagcaa tcgaatcgct ttctgtatgg gttttatttt gcgcagctat aaaatcaacc
     6481 ttatcagcct taatatcaat ctcgcctcca ttaagctcac ttcctttaat gcttacattt
     6541 ttttgagcat ttaaatttaa aatatcggat tgaatttgtg atgaagacac caaagaagca
     6601 tcagtattta cagaactttg cttatatcca gcaatagaac ttgttgaaga atgagaagaa
     6661 cttgaaattt tattttctcc attttctatt gtaatatttt ctccatttaa attagcagat
     6721 ttatccgctt gtaaagttga gcctgtgatt gctatattgc cgttggtatt aatattaata
     6781 tcaccttttg aatttaaagt actgcttatt gattttgaag tttctaaatt agcactttca
     6841 taactgatct ctacgggttt taaatacaca ccatcggttt tagtcttgct aagttcgtgt
     6901 gcatctttaa tattaacatt gttagcattg atatctattt tagaatcagc attgatattg
     6961 ctagctataa tatttacatc ttgattggaa acaattccta catttgctcc tttgatattg
     7021 gtgcttaaaa ccccatctat actcgttgta gtattggatt tttgactatc tgtattaatt
     7081 tgctcaaatg aagatgattt agaataatcg tttttgatat ttacatcacc cttttgagat
     7141 ataagaacaa ttttagaatc attcgcacta gtagaaatat cactattttt gatatttaaa
     7201 tcatttacag aatcaatatt aacaacatta tttgctttaa tctctccttt tttaattgaa
     7261 ttataagagc ctttttcatc tatacctaaa acagtgtcta tattgacatt attggcactt
     7321 aaatttatat tttgcgcatt taaattagaa ctttgcaaat taatctcgtt gccagcattg
     7381 atattaatct gaccctctga agctatgtcg cctaacaaag aattaaatga ttgcgtatta
     7441 atatctacgc ctgtttttcc tgtaagattt gattttattt catcatttcc aattgtctct
     7501 ttagaaagat acaacatagg agccatgata tttttaccgt tttgtttgat tgttacatat
     7561 aaaatcatat cttgatcaac agcttgattt ttagccaaac cttgacccaa atttaagcca
     7621 ttttcattgg catattttgc tccattttca agtaattttt tgatttcttc ttcgctcaat
     7681 ttagtattgg attgtagtgc gtttgcatac attgcgttaa taagctgatt ttcaaaaaag
     7741 gatctcctat aactataaat tcgttgaagt ttttattttt aaattgattt aaaatactta
     7801 aaaatccaaa atacttgctt tcatctatga tagaagtatt tgtagtgtat tcataagtaa
     7861 tattatcatt tgttttattt tcaagagtaa ataagcctga attgataaga tcaggtatag
     7921 aatttaaaat taaatcttga ctatttgtcg ctttttttaa atccgaatca agtaaggcaa
     7981 aatttttatc caaagaactg actaaatctt gattgtattc cttagcatta agatctaatt
     8041 taccctttga agcaataaca gcctcggatt ttgctttaaa aacaatcttt gcatcaagat
     8101 tccactcttt ttgatcagga acaaatcttt ttgaagcata atcactacca aataataaag
     8161 aaaaatattg gtttaaagct gaatttttag ctgctgcatc tttaagcgca ttccacgctg
     8221 attctctttg atgatttttt gcttgggtgg tagaaaaata tttcaaagca tcaagcaagc
     8281 tttcatgatc tacaaaataa taagttgaat ttgtattcca agaaccaaga tattctttag
     8341 caaaaaatcc attaactcta atttgctcta aaatttcacc tacagaaatt tctttactta
     8401 aagacttatt gtctatattt ccaaaagata cgatattgcc ttgagcaaga atttttccgc
     8461 tgttgttgat ttgtctagca ttatcttgtg attgggtatt gatatttata tctttacctg
     8521 cttggataga agcttgcttg ctgtctaata aattattata ttttacaata cccgtaacac
     8581 ctacttccat attccatcgt ttaaaagcag tatcaccgta ccctacttga ccaaaacctt
     8641 gagaatactc ggtcgaagtc tcaagcatgc ctgttaaatt tgcattatta tttaaaatat
     8701 ttgcctcgat attgatactt tatctgcaaa aattaaagca ttattatgaa tcgtatgggc
     8761 atttaaatac aaattattta agctattaaa agtggaatta tttgtaaggg ttgtagcttg
     8821 ggctctaaga tcaccatttg aaaataaata agcatcattt acaagatttt catctgcatg
     8881 aagatttaat tcttttccac tagcaacaag gtttttaaca taaatatttt tcgcatcaag
     8941 ctctattgaa gaagtatttt cgagttttga attgatattt aaatcattca agctttttat
     9001 atgaagcaaa ttttgtgcgt ataaatttcc atgatttaaa gttaaatctt tattagcttg
     9061 tatttgaata tcattttggc ttaaaatttt gccattatta ataaaagcat catcattaag
     9121 cattaagctt atatctttat ttgctgaaat ttctccttga ttgtcaaaag aatttgtacc
     9181 cactttaata tcatttaaag cattgataaa tccaaaattg ctagttttat ctagggtatt
     9241 taaagttaaa ctgtctgcaa aaatacttga attttcttga tttatcttaa aaatatcttt
     9301 tgtttcttgg ctcaaatttg tttgctttgc attttcaaaa ttattggcat tgatttgaat
     9361 ttgcttgcct ttataaagtc cttcatttgt aacttttcca cttgctttta aatcaattgt
     9421 atctgcattg attaaagagg ttttaatatc tttagcgtct atcttaacac ttccatttgt
     9481 atttacacct atagcttgaa attcagcctt atcttttact tttactataa catcttcaat
     9541 tccgcgtatt actccactat gtcttacacc aacaccctct tctgtgctaa taagagtaac
     9601 tgtatttgca tacatagatc ctaaatattt cccatcaata ccataatcat ttttttcatc
     9661 tttttgtttt gaagcaataa tttttggagc atttggagta cttaaatcga ccttattaag
     9721 cccagctata aaattaatat cggataaatt tttaccactt tgatagtggg caatactacc
     9781 tgcaaggtca atcccacagc tgattacatt aaaataatcc ccatcaacca ttaccccttt
     9841 tcttcaatgg ctaccctacc attgcttgtt acttctgtaa aatctccatt gaatttgcct
     9901 gtgctaagtg taactccttt agtatttaaa aaagccgctc catttacact aaaaccattt
     9961 tcattagcaa aaattaaatt agcacttttt ccaaatacct caacagcgcc attgatatta
    10021 gaagcttgct tacttgaaat ttcatttata atagtattgg cattttgttt taaatttgga
    10081 tttttcccta cccatcctcc aatttgagaa tttccatctt ttaaactatt attaaaaatt
    10141 actccatctt ggacactgaa ttcatcaaat tgattgtgtg atactccatt ttgatttggg
    10201 tttttgatat taattacatc agttttattg cttgattgcg taagatctgt tgttcttgaa
    10261 acaataacat taccatttct ttgacgcaag tctgctgaga acaatacgca aggaaataaa
    10321 gcaccaagga gtgttaaatt caacgataaa cgaacaattt tctttttact aaattccat
//
LOCUS       DBBXRO010000053        10283 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.054, whole genome shotgun sequence.
ACCESSION   DBBXRO010000053 DBBXRO010000000
VERSION     DBBXRO010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10283
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.054"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            12..905
                     /gene="msrP"
                     /locus_tag="ACJFEZ_001018"
     CDS             12..905
                     /gene="msrP"
                     /locus_tag="ACJFEZ_001018"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HGG0917146.1"
                     /translation="MIVTPEKLYKQRRDFFKLGAGALIGSSLIVSKLSALNFINDTNA
                     NKLEISNEELATNYINFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPFTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFKLRRLIDMAKPTSEAKFIKFTTLLDKNQFPD
                     QDALFPTVEYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFVKEQPIGTWEKYAPNEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYAGMDLKANY"
     gene            905..1453
                     /locus_tag="ACJFEZ_001019"
     CDS             905..1453
                     /locus_tag="ACJFEZ_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric reductase-like transmembrane
                     domain-containing protein"
                     /protein_id="HGG0917147.1"
                     /translation="MRTKYFKFLAYFAFLASLIYGFYHILKAFDFVKEAYIYTGVFAL
                     FFLNLSLLFSLCKFKKTKSYPKLLGIFAAFWAFLHFLNYFIFDRNANFLRLFDDISHR
                     LLEASGFFAFIIIFFMFLSSFRFFKRIEKIRKLGYVCLVLASYHYFLSPKVPMFWEWS
                     ALMLSLVYFMIRYLKFFKFKKA"
     gene            complement(1450..3162)
                     /locus_tag="ACJFEZ_001020"
     CDS             complement(1450..3162)
                     /locus_tag="ACJFEZ_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0917148.1"
                     /translation="MVRLKEFLSLKNIEESQIYKELKCSKNEALILRELCKNYVISIS
                     SINAFTLLTGIFGSEKYSYLDTLEDLKRLIERGFVNQNSGFFKNIESNKSQNLILSLL
                     QSELSLSEYFLEFLEAKPRLNLDKKEAYGEYLEYLKDEFMRVELYERLSFIRSSTYSD
                     ELKAQIKLYEKHIKERLKKSKFYNILADIFKEYSLEYKEQIIFLALLKEEYTLSNENS
                     VSREMNSLLSLVSENDLEKHKNKSLLQENAPLLNLIEYDEYLNAFGDISKSFFITDEI
                     LQRIINFEPKQNKKIKIENVLKEQDIFELIEPSIDINDIIMPQNTKELLENILKQQDK
                     KVLERLNSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKTVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVESSSGSDKMHNQMQNIF
                     LEQIERFNGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKMWEKFLPRKASFE
                     KAFDVNLLANYELSGAQILMVVKNTALKVAVTEDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(3164..3988)
                     /locus_tag="ACJFEZ_001021"
     CDS             complement(3164..3988)
                     /locus_tag="ACJFEZ_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917149.1"
                     /translation="MKIGLLLCFFVSLVCAQIYKGEIYFYDLKDKQVFAIVYDNAPFV
                     PIFDRDVNQTSSSFLILSDLDTNIDEIALFQTANSWEDGEKKYKISSSKELVFDNKKI
                     QGNKLGTTTLELIKEQNNIRIKRSLDFLAHQDEIRQFRPMYNDIVSFEQIRQKPIVLK
                     DGKLSFEEWYYFYEEDNRAILELNNFVFDMDKKVFLSLNELYDVDNLKFKELLHQKLN
                     LVCDECFDDMEQVFFNNNFLITNLGLRLCYLPYENHYLNENICVDFNENEIKEFRK"
     gene            complement(3985..4467)
                     /locus_tag="ACJFEZ_001022"
     CDS             complement(3985..4467)
                     /locus_tag="ACJFEZ_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917150.1"
                     /translation="MRKIFIFFLILFFSACALKNQDYSSQKMKVVFSTPTIKINDFGF
                     LKKENKALNLEVYKLGQAFFKLKIREDICLNSVCYSKMVFNQKFFKNAYYEDILKDIL
                     EAKPLWNGKNMQKTQCGFNQNLNSANYEIFYEVCDNKISFVDRISRIKIVLMNFKDKI
                     "
     gene            complement(4478..4969)
                     /locus_tag="ACJFEZ_001023"
     CDS             complement(4478..4969)
                     /locus_tag="ACJFEZ_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HGG0917151.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIEF
                     SEKDGVFKLHSSSETKLDVLKDIVISKLIKRGINSSAIKELSRESGAMFRLNLKANDS
                     IDSENAKKINKAIKDSKLKVSSSIRGDEIRVVAKQIDDLQAVMKMVKELNLELNLSFK
                     NLK"
     gene            complement(4959..5894)
                     /locus_tag="ACJFEZ_001024"
     CDS             complement(4959..5894)
                     /locus_tag="ACJFEZ_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HGG0917152.1"
                     /translation="MKIVCLDAATLGDYDLSIFKNFGEFQSYALTDRKETIERLKDTD
                     VVMTNKVVIDKEVMDACPNLKLILETATGVNNIDVEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFIFAFLNHIPYYDKWSKEGKWCDSPIFTDFGRILNSMEGKKHGIIGLGSIGKEV
                     AKISSAFGAKICYYSTSGLNQNAEFECLNLEELLRTCDIVSIHAPLNEKTKNLLTYEK
                     LKLLKDNAILVNVGRGGIINENDLAKIMDEKNIRVGLDVLESEPMIKNHPLLNIKNKE
                     NLIITPHVAWASKEAVEKLMSMVYDNLKEWIENGK"
     gene            complement(5897..7066)
                     /locus_tag="ACJFEZ_001025"
     CDS             complement(5897..7066)
                     /locus_tag="ACJFEZ_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HGG0917153.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISDKLVCVSENEAN
                     AYYEAVNELYDMFVAAAQNVIDNNRFDELGIPFNLVDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWAILKQNGMDESKQFNSMYESLMDNFKRLI
                     TLEEDTQGFEEYYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFETDFSFVDEVEFS
                     EEGIFKEGVNYEYWFKLVPWEDIAIEEGELAMLLTQIMRNQKAIILNPAYTLLFQSKG
                     ILKILWELFPNHPLLLETRDVPLEGKDYVKKPVFGREGANISIIKEGKILHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(7076..7681)
                     /locus_tag="ACJFEZ_001026"
     CDS             complement(7076..7681)
                     /locus_tag="ACJFEZ_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HGG0917154.1"
                     /translation="MKKIKKIIQIGMISGLAAVAGGALVGCGSSNDNSDTLNQAANTQ
                     GAFVIIEEIAPGQYKIKDQFPSDETRVVLKDINGTERVLSKEEMDALIKEEAAKIDNG
                     TSNLTKEGGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTAGSASSASKSGFFGGGSKATSSSSSFGS"
     gene            complement(7884..8096)
                     /gene="rpsU"
                     /locus_tag="ACJFEZ_001027"
     CDS             complement(7884..8096)
                     /gene="rpsU"
                     /locus_tag="ACJFEZ_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HGG0917155.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            8242..9618
                     /gene="ccoG"
                     /locus_tag="ACJFEZ_001028"
     CDS             8242..9618
                     /gene="ccoG"
                     /locus_tag="ACJFEZ_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HGG0917156.1"
                     /translation="MENHITNYTKKRYFVYLIATIVIFCLPFITINGNHFFLLSFDHS
                     KLNLFFISFSTQELYLMPFLLIFLFLFIFFITTLGGRVWCAWSCPQTIFRVIYRDIIQ
                     TKLLKIRKNINNKQKEYEGYYFKKIIGVILFYFISLVAVSNLLWYFVPPEDFFAYIQN
                     PGEHLLLLGVLFCASLFLTLDITYLAEKFCIYVCPYARVQSVMFDRDTMQVIYDEKRG
                     GVIYDGHTKLYKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSVKAIETRKKVNYLRFRTIAYFIVLVIALIALMIMGSKKEDMLLNIN
                     RSSELYQISHTNNGLEISNAYTFLFQNTDSKAHEYYFEASLEGIDNGIEIIRPSKAFT
                     LKAGEQAKKIVVIKATKKLADNDQKDVIFPLHIKAYAKDNDEIVIFRESIFVYPKSTI
                     LKGYNESK"
     gene            9605..10240
                     /gene="cmeR"
                     /locus_tag="ACJFEZ_001029"
     CDS             9605..10240
                     /gene="cmeR"
                     /locus_tag="ACJFEZ_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HGG0917157.1"
                     /translation="MNPNKTPSKKVLARREKIKNVAFDLFLTKGFQETSLSDIIKLSG
                     GSYSNIYDSFNSKEGLFFEILDDVCKKHFDLIASQTQTIKDKNLKEFLTSFGLTFVDI
                     FNQVQTVAFGKIIFSQVYDKHKHVENWIENNQKIFSYNILIELFKKQDSSYISNNAQK
                     LAMLFCAMLREPYHSLNVLADTPLMNKQEQKEHVEFIVNIFLKGIENKTSI"
BASE COUNT         3418 a         1765 c         1309 g         3791 t
ORIGIN      
        1 aaggaaaaat tatgattgta acgcctgaga aactttataa acaaagaaga gattttttta
       61 aacttggagc aggagcttta atcggctctt ctttaattgt ttccaaactt tctgctttaa
      121 attttataaa tgatacaaat gcaaataaac ttgaaattag caatgaagaa cttgcaacaa
      181 actatatcaa tttttatgaa ttttcaacgg ataaaagaaa ggcagtatct ttagcgcaaa
      241 attttaatac tcaaaattgg aaaatcgata taagcgggga aatagaaaag cctttcactc
      301 ttagcatgga ggatatttta aaatttcctt tagaagaaag aatttatcgt tttcgctgtg
      361 ttgaaacttg gtctatggta gtgccttggg taggttttaa actacgccgt ttaatcgata
      421 tggcaaaacc aactagcgag gcaaaattca ttaaatttac cactcttttg gataaaaacc
      481 aattccccga tcaagatgct ttgtttccaa ctgttgagta tccttatgtg gaaggcttac
      541 gtatggatga ggctatgcat ccactcactc tacttgcagt gggtatgtat aaaaaggctt
      601 taaaaccaca aaatggagca ccaatccgcc ttgttgtacc ttggaaatat ggatttaaaa
      661 gtattaaatc catagttaaa atcgaatttg taaaagagca gcctattggc acttgggaaa
      721 aatatgctcc aaatgaatat ggcttttatg ccaatgtcaa ccctaatgta tcccatccta
      781 gatggtcgca agctaacgaa agggctttag gagacttttt taccaaacct actttaatgt
      841 ttaatggcta tgaaaaagaa gtagcaagtc tttatgcggg catggattta aaggcaaatt
      901 attaatgcgc actaaatact ttaaatttct tgcctatttt gcttttttag caagcttgat
      961 ttatggcttt tatcatatat taaaagcctt tgattttgtc aaagaggctt atatttatac
     1021 aggagttttt gctttatttt ttttaaattt aagccttttg ttttctttat gcaaatttaa
     1081 aaaaaccaaa agctatccta agctactagg aatatttgct gcattttggg catttttaca
     1141 ttttttaaat tattttatct ttgatagaaa tgcaaatttt ttaagacttt ttgatgatat
     1201 ctctcatcgt ttattggaag cgagtggttt ttttgctttt atcatcatct tttttatgtt
     1261 tttaagctct tttagatttt ttaaaagaat tgaaaagata agaaagttag gttatgtatg
     1321 cttggtttta gcaagttatc attatttttt aagccctaaa gttcctatgt tttgggaatg
     1381 gagtgctttg atgcttagcc ttgtttattt tatgatacgc tatttaaaat ttttcaaatt
     1441 taaaaaagct taaaaaccga caattttgct tttatcaaaa ctagaattta attctttttg
     1501 tatactctct ataaaatctt gcattttaaa tactccatct tcagtcacag ctaccttcaa
     1561 agcagtattt ttaacaacca ttaaaatttg cgctccactt aattcgtaat ttgctaaaag
     1621 attaacatca aatgcttttt caaaggatgc ttttctaggt aaaaatttct cccacatttt
     1681 aagcctatct ttaaaatcag gctttttaaa ttcgatctta taatcaaatc ttctcgaaaa
     1741 agcactgtct aaactttcta aaaagttagt tgtagcaatg ataacaccat taaaacgctc
     1801 aatttgctct aaaaaaatat tttgcatttg attatgcatc ttatcacttc cgctactgct
     1861 ttcaaccctt gtgcttaaaa actgatcagc ttcatttaaa agcaatatag gactttgttt
     1921 gcaagtttga actatgtttt tgtaagtatc aaaaattttc cttacatttt gttcgctctc
     1981 acccacccat ttacttaaaa ttttagaaca atcaaagcta agcactgttt ttttcatcga
     2041 ttttgccata gctagggctg acatcgtttt ccccgttcca gcaggtccat aaaaaataat
     2101 ctttgcttct atatttttat tgctctttat cccccaagaa tttagccttt caagtacttt
     2161 tttatcttgt tgttttaaga tattttccaa aagctcttta gtattttgag gcatgataat
     2221 atcatttata tctatacttg gctctataag ctcaaaaata tcttgctctt ttaaaacatt
     2281 ttcgatttta atttttttat tttgttttgg ctcgaaattt ataattcttt gtaaaatttc
     2341 atctgtaata aaaaaactct tagaaatatc accaaaggca tttaagtatt catcatattc
     2401 tattaaatta agaagaggag cattttcttg caataaactt ttatttttat gcttttctaa
     2461 atcattttca ctgactaaag aaagtaaaga attcatctct ctagatactg agttttcatt
     2521 gcttagtgta tattcttctt taagaagagc tagaaaaata atctgctctt tatactcaag
     2581 actatactct ttaaaaatat ctgctaaaat attataaaat ttacttttct taagtctttc
     2641 tttaatatgt ttttcataaa gcttgatttg tgctttaagt tcatcactat atgtgcttga
     2701 acgtataaaa ctcaatctct catacagttc aactcgcata aattcatctt ttaaatattc
     2761 taaatactct ccataagctt cttttttatc caaatttaaa cgaggcttgg cttctaaaaa
     2821 ttctaaaaaa tactcactta aactcaactc gctttgcaat aaactaagaa ttaaattttg
     2881 gcttttattg ctttctatat ttttaaaaaa gccagaattt tgatttacaa aacctctttc
     2941 aataagcctt tttaaatcct ctaaagtatc taaatacgaa tatttttcac taccaaaaat
     3001 tcctgtcaat aaagtaaaag cattgataga agatatggaa atgacataat ttttacaaag
     3061 ttctctcaaa atcaaagctt cattctttga acactttaat tctttataaa tttgactttc
     3121 ttctatattt ttaagactta aaaattcctt tagcctgacc attttatttt ctaaattcct
     3181 ttatctcatt ctcgttaaaa tcaacacaaa tattttcatt caaataatga ttttcataag
     3241 gaagatagca caatcttaaa cccaaatttg taattaaaaa gttattatta aaaaaaactt
     3301 gctccatatc atcaaaacat tcatcgcaaa caagattcag tttttgatgc aagagttctt
     3361 taaatttcaa attatccaca tcataaagct catttaaact taaaaaaact tttttatcca
     3421 tatcgaaaac aaaattatta agctctaaaa ttgcgcgatt atcctcttca taaaaataat
     3481 accattcttc aaaactaagc tttccatctt ttagtacgat aggcttttgg cgaatttgtt
     3541 caaaactaac aatgtcgtta tacataggac gaaattgtct gatctcatct tgatgggcta
     3601 aaaaatcaag actgcgtttg attcttatat tgttttgctc tttgataagt tcaagagttg
     3661 ttgttcctag tttatttcct tgaatttttt tattatcaaa taccagttct ttagaagaag
     3721 aaattttata ttttttttct ccatcctccc atgaatttgc tgtttgaaac aaagctatct
     3781 cgtcgatatt tgtatcaaga tcgctcagta ttaaaaaact agaactagtt tgattaacat
     3841 ccctatcaaa aatgggtaca aaaggagcat tatcataaac tatagcaaaa acctgcttat
     3901 cttttaagtc ataaaaataa atttcaccct tataaatttg cgcacaaacc aaactcacaa
     3961 aaaagcataa caacagccct attttcaaat tttatcctta aaattcatta aaacaatttt
     4021 tatacgcgaa attctatcaa caaaactgat tttattatca caaacttcat agaaaatttc
     4081 ataatttgcg ctgtttaaat tctgattgaa tccgcattga gttttttgca tattcttacc
     4141 attccacaaa ggctttgctt ccaaaatatc ttttaatata tcttcataat aggcattttt
     4201 aaaaaatttt tgattaaata ccattttgct atagcacacc gaatttaaac aaatatcctc
     4261 tctgatttta agtttaaaaa aagcttgtcc aagtttataa acttctaaat ttaaagcctt
     4321 attttctttt tttaaaaagc caaaatcgtt gattttaata gttggtgtgc taaatacaac
     4381 cttcattttt tggctagaat aatcttgatt ttttaaagca caagcactaa aaaacaaaat
     4441 taaaaaaaag ataaaaattt ttctcaacac tcttaaccta ttttaaattt ttaaaactaa
     4501 gatttaattc taaattaagc tctttaacca ttttcatcac agcttgcaaa tcatcaattt
     4561 gctttgcaac tacacgaatt tcatctcctc gtatagaaga gcttactttt agcttactat
     4621 ctttaatagc cttattgatt ttcttagcat tttcactatc aatgctatca ttggctttta
     4681 aatttaaacg aaacatcgct ccactttcgc gcgaaagctc tttaatagca cttgaattaa
     4741 tacctctttt gataagtttt gaaatcacaa tatcttttag aacatcaagc tttgtctcac
     4801 ttgaagaatg aagtttaaaa acaccatctt tctcgctaaa ttcaatttca cacttaatac
     4861 cttttaaatc atagcgagaa tcaagctctt tttttgcttg ctcaaaagca tttttaagct
     4921 cttgtttatc caaagccgct gaaatatcaa aactatgttc acttgccatt ttctatccat
     4981 tcttttaaat tatcataaac catagacatc aatttttcca ccgcttcttt gcttgcccaa
     5041 gccacatgtg gagtaatgat gagattttct ttatttttga tatttaagag aggatgattt
     5101 tttatcatag gttcactctc taaaacatca agtcctacgc gtatattttt ttcatccatt
     5161 atttttgcca aatcattctc attaatgatt ccgcccctgc ctacattgac caaaatcgca
     5221 ttatctttta aaagttttaa cttctcataa gtaagcaaat ttttcgtttt ttcatttaaa
     5281 ggagcgtgaa tgctaacaat atcgcaagtt cttaaaagct cttccaaatt taagcattca
     5341 aattcggcat tttgattgag tccgcttgtt gaataataac aaattttagc cccaaaagca
     5401 ctagaaattt tagccacttc tttacctata ctgcccagtc ctataatacc gtgctttttt
     5461 ccttccattg aatttaaaat tctaccaaaa tctgtaaaga tagggctatc gcaccatttg
     5521 ccctctttgc tccatttatc atagtaagga atatgattta aaaaagcaaa aataaatgca
     5581 aaagtatgct gaactacgct catagtagaa tatccagcag catttttaac gataatgccc
     5641 ttttctttag catattcaac atcgatatta tttacacccg tagctgtttc taaaataagc
     5701 tttaaattag ggcaagcatc cataacttct ttatcaataa caactttatt tgtcataacc
     5761 acatccgtat cttttaaacg ctctatggtt tcttttctat ctgttaaagc ataactttga
     5821 aattctccaa aattcttaaa aatacttaaa tcataatccc ctaaagttgc cgcatctaaa
     5881 caaacaattt tcatttctaa tcctttataa tatgtcctac aaatttagaa taattatcaa
     5941 gcacaagtcc tccttttcta aatcctaagc cacacccttc ataagcaaag aaaacacctg
     6001 cttgatagta ttcgttttca catgaattaa actctacata ttcttgataa atagccttat
     6061 tattcccata aggacctaca ttctcatgta aaattttacc ttctttgatt atactaatat
     6121 ttgccccttc tctaccaaaa acaggttttt tcacataatc ttttccctct aaaggaacat
     6181 ctcgtgtttc taaaagtaat ggatgatttg ggaaaagttc ccataaaatt tttaaaattc
     6241 ccttagattg aaataaaagc gtataagcag gatttaaaat aatagctttt tgatttctca
     6301 tgatttgcgt taaaagcatg gctagttcgc cctcttctat ggctatatct tcccaaggaa
     6361 cgagcttaaa ccaatattca taatttacac cctctttaaa aattccctct tcgctaaatt
     6421 ctacctcatc tacaaaagaa aaatctgttt caaatcctgc ttcatttgca atatgagcaa
     6481 gtaattttgt agtgatttct tcctctttac ttcctgccac acttgaaaaa agaattttcc
     6541 atccttgata atactcttca aagccttgag tatcctcttc aagggtaatc aatcttttaa
     6601 aattatccat caagctttca tacatgctat taaattgctt actttcatcc atgccatttt
     6661 gctttaaaat cgcccattgt aaaatcgcac tttcaaaaag agcagtgggg gtatctgcat
     6721 taaattctat aagctttata ggcttgccat caagtccacc cgctaaatca aaacggccat
     6781 ataaatgcca atgaacctca ttttcccaac tcattttaat agcatcaaca agattaaaag
     6841 ggattccaag ctcatcaaaa cgattattat ctataacatt ttgtgctgca gctacaaaca
     6901 tatcataaag ctcattgact gcctcataat aagcattggc ttcattttca cttacacata
     6961 ctaatttatc acttatataa tcacttccat cttcatctgt atgccaagaa aaacctatat
     7021 tttctaaata atctttttga agtttgtcta cttgtagtaa ttgcattatt tatccttaag
     7081 agccaaaaga agaactagaa cttgtggctt tagagcctcc accaaaaaaa cctgattttg
     7141 aagcacttga ggcagagcct gctgtgcctg ccttgttaaa actattaaca cttctttgat
     7201 aagcactttg atttgaaaaa gcgcctcgtt gttgattggc aaaattttga ttattaaaga
     7261 gcttagagcc tatccagcta cccaaaattg cacccgcagc acttgcaagc aaggtctctc
     7321 ctaagcttaa tcctccactg ctgatttgac cgccctcttt agtcaaattt gaagttccat
     7381 tatcaatctt agctgcttct tctttgatga gcgcatccat ttcctctttg cttagcactc
     7441 tttctgtgcc attgatatct tttaaaacaa ctctagtttc atcacttgga aattgatctt
     7501 tgattttata ttgacctggg gcgatttctt caatgataac aaaggctcct tgagtgtttg
     7561 ctgcttgatt taaagtatca ctattatcat tgctacttcc acatcctacc aaagctccac
     7621 ctgcaacagc tgcaaggccg cttatcatac cgatttgaat aattttttta atttttttca
     7681 tagtcttgat cctcaaatga gatttagaat ttattttttg ataaaattct aacaaaaaat
     7741 aatcaattaa atcttacaaa aatgaaaata ttttaaagaa ataaaatgca atcttaatat
     7801 atataaaata aaactaggat tttaaaaaag gtaattttgc aaagaaatct taaattaaga
     7861 aaaaagccct ttcgggcttt gggttaaagt cttgactcgt agcgtctaag catataaagt
     7921 cttttaagca tttttttgcg agctgaaatt ttttgttttt tacgaatttc agtcataggc
     7981 tcaaaaaatc ttctcgctct tacttcagta acaactagat ttctatctac ttgttttttg
     8041 aacttacgat acgcttcgtc aaaagactcg ttaggatgta ccttaattcc tggcactatc
     8101 ctcaccacct ttctgtgtaa atttttgttg tgaattatga ttatagaata tttcttatta
     8161 atccaaactt agaaagcatt taaaaattgt tttagttttt tgggctataa tcgtaattac
     8221 taatttttta cgaggttttt catggaaaat cacatcacca actatactaa aaagcgttat
     8281 tttgtatatc taattgcaac aattgtaata ttttgtttac cttttattac aattaatggc
     8341 aaccatttct ttttattgag ctttgatcat tctaagttga atctattttt tatttcattt
     8401 tcaactcaag aattatatct tatgcctttt ttgcttattt ttcttttttt atttatattt
     8461 tttataacca ctttaggagg aagagtttgg tgtgcttgga gctgtcctca aactattttt
     8521 agagtgattt atagagatat tatccagact aaacttttaa aaattcgtaa aaatattaac
     8581 aataaacaaa aagaatatga aggatattat tttaaaaaaa tcataggggt gattttattt
     8641 tatttcatat ctttagtcgc tgtaagtaat ttgctttggt attttgttcc gcctgaagat
     8701 ttttttgctt atatacaaaa tccaggagaa cacttacttt tattgggtgt tttattttgc
     8761 gcaagtttgt ttttaacttt agatattacc tatttagcag aaaaattttg tatttatgta
     8821 tgtccttacg caagagttca atctgtaatg tttgaccgcg ataccatgca agttatttat
     8881 gatgaaaaac gcgggggagt gatttatgat ggacatacca aactttacaa aaaaccgcct
     8941 gagggtgaat gtataggttg tgaagcctgt gtaagcattt gtcctactca tatagatata
     9001 cgcaagggta tgcaacttga atgtatcaat tgtttagaat gtgctgatgc ctgttctaaa
     9061 gtgcaaagca aatttaatag accaagtttg attaattgga ccagtgtaaa ggccatagaa
     9121 acacgtaaaa aagtaaatta tctccgcttt agaaccattg cttattttat tgttcttgtg
     9181 attgctttaa ttgctttaat gattatgggt agtaaaaaag aagatatgct tttaaatatc
     9241 aatcgtagca gtgaacttta tcaaatttcg catactaata atggtttaga aatttcaaat
     9301 gcttatactt ttttgtttca aaatactgat tctaaagctc atgaatatta ttttgaagct
     9361 agcctagaag gcattgataa tggcatagaa atcattcgtc caagtaaagc ttttacatta
     9421 aaagcaggag agcaagctaa gaaaattgtt gtaataaaag ctactaaaaa gctagcagat
     9481 aatgatcaaa aagatgtgat ttttccactt cacatcaagg cctatgccaa agataatgat
     9541 gagattgtca tttttagaga aagtattttt gtttatccta aaagcacaat tttaaagggg
     9601 tataatgaat ccaaataaaa caccttctaa aaaagtttta gcaagaagag aaaagattaa
     9661 aaatgttgct tttgatctat ttttaaccaa gggctttcaa gaaaccagtt taagcgatat
     9721 tatcaaacta tcgggcggtt cgtattctaa tatttatgat agttttaata gtaaagaagg
     9781 tttatttttt gaaattttag atgatgtttg caaaaaacat tttgacctaa tagcctctca
     9841 aactcaaact attaaagata aaaatttaaa agaattttta acctcttttg gacttacttt
     9901 tgttgatatt ttcaatcaag tccaaaccgt cgcctttggc aaaattattt tctctcaagt
     9961 ttatgataaa cataagcatg ttgaaaattg gattgaaaac aatcagaaaa ttttctccta
    10021 taacatactt atagaacttt ttaaaaagca agatagtagc tatatttcaa ataatgccca
    10081 aaaacttgcc atgctttttt gcgccatgtt aagagaacct tatcatagtt taaatgtttt
    10141 agccgatact cctttaatga acaaacaaga acaaaaagaa catgtggaat ttattgtcaa
    10201 tatattttta aaaggaattg aaaataaaac ctcaatttaa ttaagtaaat ataaaaatta
    10261 ttaaccaaat ttgagctata ata
//
LOCUS       DBBXRO010000054        10265 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.055, whole genome shotgun sequence.
ACCESSION   DBBXRO010000054 DBBXRO010000000
VERSION     DBBXRO010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10265
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.055"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1058)
                     /locus_tag="ACJFEZ_001030"
     CDS             complement(<1..1058)
                     /locus_tag="ACJFEZ_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HGG0917158.1"
                     /translation="MSILEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIY
                     DKTHNVFMYENLEEELNFFYQSILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYEMFV
                     NNVYYKKFYEDVWHKADELCEKNIKVVIRNLNSSLCIGFECYSHLLQNIPSMLESIPF
                     QRILSQRKNKFENAIVVSAGPSLAKQLSLLKAYQDKAVIFCADGALSMLEKEGIVPDY
                     VTNLDFTDLAMKFFQNKENKTSLNVLSCATHLSLVHFLDNKSVVLRDDPLYQRFNLND
                     FGYIDTGTHVSHFSYTLA"
     gene            complement(1069..2319)
                     /locus_tag="ACJFEZ_001031"
     CDS             complement(1069..2319)
                     /locus_tag="ACJFEZ_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0917159.1"
                     /translation="MIVSKTYEIDSCDDVELDIKRESKLEFKLWYDDEKEIKALVFII
                     PGLGGDVDENYREHLAEFVAGEFNVAVVSVNYHCIGNRPQTGSSFFMDDIDKLILKTS
                     CEALNIQVNLDKLNSLEELSSTLKEVDHILEEQKNQKLINPNFKLSIHLSLQPTKNEY
                     QNFGVMQAQDLLNAALYLKAHAPFDTMGGGMPVIMIGSSHGGYLAHLAAKFAPWLING
                     VIDNSSYAKFLWRLIGFGKEIDFTKYYCFGTGIFFKHIHIYCSDKTFWTSNSSSNNFF
                     SIPRRMIRYILELNHIENQANYPKPYYVSYHSFYDKEIAPPDEKLELYKYLKQFDFDA
                     ELHMIKNPDQIDGKFIKSLDHGMGMSIKTLISKELPCMLEKVLSESDSKKEWKNKSIS
                     YPCDGLVYRFSEKNNKINLDITKT"
     gene            complement(2319..2834)
                     /locus_tag="ACJFEZ_001032"
     CDS             complement(2319..2834)
                     /locus_tag="ACJFEZ_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HGG0917160.1"
                     /translation="MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRVGDEKECLKLVF
                     INKADFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(2838..3845)
                     /gene="tsaD"
                     /locus_tag="ACJFEZ_001033"
     CDS             complement(2838..3845)
                     /gene="tsaD"
                     /locus_tag="ACJFEZ_001033"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HGG0917161.1"
                     /translation="MKNLILAIESSCDDSSIAVIDKDTLECKFHKKISQEMEHNVYGG
                     VVPELAARLHSEALPKILEQCKGYFDKLCAIAVTNEPGLSVSLLSGISMAKTLALSLN
                     LPLMAINHLKGHIYSLFLEEPICLDMGILLVSGGHTKVLYLKEDGKIEILARTNDDSF
                     GESFDKVAKMMNLGYPGGVLIENLAQKAKSKNIHFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLDEDIKAEIAYGFENAACEHIMDKLEKIFNLYKFKTFGVVGGASANLNLRS
                     RLQNLCEKYQSKLKLAPLKYCSDNALMIARAGVDTYKRKEFVELEEEILSPKNKNFLR
                     M"
     gene            complement(3842..5236)
                     /locus_tag="ACJFEZ_001034"
     CDS             complement(3842..5236)
                     /locus_tag="ACJFEZ_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M99 family carboxypeptidase catalytic
                     domain-containing protein"
                     /protein_id="HGG0917162.1"
                     /translation="MKFFISIIFFISGLFALDLEFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGKNGDLNRKFASISPKDPD
                     YQTVKRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTNEINASK
                     YPDLESIATQTVNSVNASLVDPKHAYHLKNTKTQELGDAEMLKALTYFVISNRKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFTRTFELTPQGVDKAINQELEVKLFDDK
                     ILLSLKNPRQVINYVPFPVNKELNYNTSNELTAVIAENNSFYIQYGNRFQTRLYPEYL
                     EFSNPFNEVTFQVDSNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESNILV
                     SKKNMQKPYSLDMAGKIYRVEFYELRGANLQQFLENSVESKLIKNAKILDLATLRTAR
                     AKDKFIGSILVEFE"
     gene            complement(5233..6309)
                     /gene="dxr"
                     /locus_tag="ACJFEZ_001035"
     CDS             complement(5233..6309)
                     /gene="dxr"
                     /locus_tag="ACJFEZ_001035"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HGG0917163.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHSALKFLLEGKKDIAKLYVTASGGAFY
                     KHKIKDLSHVSVKDALKHPNWNMGSKITIDSATMANKLFEIIEAYHLYNFKNIDALIE
                     PKSLVHAMCEFKNGASTAYFSRADMKLSISEAIFSKHDSKILEPVDFVKLSGLKFYKI
                     STKKYPIFKLKDELLNNPDLGVIINAANEIGVQNFLDHKIQFLDIAHVVFKALDHFGV
                     PKISSIDEVFEYDYKTREYLRGMK"
     gene            complement(6306..7031)
                     /locus_tag="ACJFEZ_001036"
     CDS             complement(6306..7031)
                     /locus_tag="ACJFEZ_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HGG0917164.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKTSLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLVCASILGTLIGIFVYSFWLSLLCSFFVAFFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGILDRIDAVIIATFVMVALL"
     gene            complement(7040..7378)
                     /locus_tag="ACJFEZ_001037"
     CDS             complement(7040..7378)
                     /locus_tag="ACJFEZ_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917165.1"
                     /translation="MPVSPIGNMNFVNQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(7381..8688)
                     /locus_tag="ACJFEZ_001038"
     CDS             complement(7381..8688)
                     /locus_tag="ACJFEZ_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HGG0917166.1"
                     /translation="MKYTELMQLQNLFSQFKKIDFIKRVNDNILELSFNRERFIFDLT
                     RGMSAIYTAKLMSKNYNAPFDFMLKKYFNNAFIKEVKLLQDNRILCFSVKVDKAYKSY
                     ESKIYFEFTGKNTNVIITDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDEKFEE
                     IKNFKDYFTQKFEILHANKIKQIQTLKLAQIDKKIENLKELYLALDKEEVLLDQALNL
                     RKQADILFANLSILKEYEREFELDDFEGKKVKFKLDLSPKESANLLYKNAKKLEQKAR
                     NLNLQRENLKEKLEFAYGLKEMLSKAKNEFELEILLPKKSTKKNQENKQDNGIANFYF
                     NEFKICVGKNEKGNENLLKSAKKDDLWLHVRDIPSSHVLIISNKQKISEEVIEFSARL
                     CVNFSGLKKGSYWVDYTLKNFVKVQQKAFVKYTNFKSINITKD"
     gene            8751..9326
                     /locus_tag="ACJFEZ_001039"
     CDS             8751..9326
                     /locus_tag="ACJFEZ_001039"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HGG0917167.1"
                     /translation="MKLENLNCVILCGGKSSRMGEDKSKLIFKNQTLTQFQVEKFSKI
                     FKNVYVSAKEDKFGAKFKLIKDCPEFEIYSPMLALYSILSNFKDEFVFILSVDSPNLS
                     DKELLKFLPSLKQDYQIIIAKTPSHKHPLCGFYHSSVAHFCKKLLEKNEQKIALLFSK
                     AKTHFVDFEDESPFLNLNFYQEYEQFKSEYE"
     gene            9323..>10265
                     /locus_tag="ACJFEZ_001040"
     CDS             9323..>10265
                     /locus_tag="ACJFEZ_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004620 - phospholipase activity [Evidence
                     IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HGG0917168.1"
                     /translation="MKKILFLIFFYSLVFCDDFEQALEFEKKGQYEKAMQIYKKLALQ
                     NSPKQDLKENNASLLSSIKHETQNTQKTPSTKEDFSRIALANYLGENSSFNPLGISSY
                     KMNYFLPFAYSFGSLGGENRKTEMKFQLSIKKRLFEDLLGLGEKYYVGYTQTSWWQNY
                     KHSSPFRETNYQPEFFVDIPLHFEDYKFLNNLRVGILHESNGKGDENLESRSWNRIYA
                     SSVFLYQRFLFVPRIWYRIPENSEDDDNPEITHYMGNFDINIGSLGNDYFINLMLRNN
                     LDFHDNKGAVQVDIGYDIFDNGIYWYLQYFNGYGESLI"
BASE COUNT         3467 a         1769 c         1357 g         3672 t
ORIGIN      
        1 aaagctaaag tataagaaaa atgacttaca tgagtacccg tatctatata accaaagtca
       61 ttaaggttaa agcgttgata taaagggtca tctcttaaaa ctacactttt attatctaaa
      121 aaatgaacca agctaagatg agtagcacat gaaagcacat ttaaagaagt tttattttct
      181 ttattttgaa aaaatttcat tgctagatca gtaaaatcta aattcgtaac ataatcaggc
      241 actatacctt ctttttcaag catactcaaa gccccatccg cgcaaaatat cactgcttta
      301 tcttgataag ctttaagtaa agaaagttgc ttggctaaac taggtcctgc agaaactact
      361 atagcatttt cgaatttgtt ttttctttgg cttaagattc tttgaaaagg aatgctttca
      421 agcatagaag ggatgttttg taaaagatga gaataacact caaaaccgat acataaactg
      481 gaatttaaat ttcttatcac aacttttata tttttctcgc aaagctcatc tgctttatgc
      541 cagacatcct cataaaactt tttataataa acattattta caaacatttc atacaaactt
      601 aagtactcaa acatatcttt catatcaaaa agtataagca gttgaatatc tactctttct
      661 tcttcgatat ccacaagata aatttttcca ctacaaagct cttcactcaa atctatcgta
      721 cttaaagcta gaataaaaag ttctatttca ctttcaaata caaaaagatg tttatagtgt
      781 ttagctaaat ttttaatcag taaagcattg cctataccat aaatacatat aaaaggatat
      841 ctaggagttt tttctaaaat actttgatag aaaaaattta attcttcttc taaattttca
      901 tacataaaaa cattatgagt tttatcatag atatttaaat tttcatctat attaaaacga
      961 gagcaagttt tattttgtat gaaatttaaa agtttatttc ctaagggttc atttacccca
     1021 cttaataaag cttgtatgtt tttttctagt atgctcatgc ggatttcctt aagtctttgt
     1081 gatatctaaa ttgattttat tgtttttttc actaaaacga tacaccaaac catcacaagg
     1141 gtagcttatg cttttgtttt tccattcttt tttagaatca gattcagata aaactttttc
     1201 aagcatacaa ggaagttctt tggaaatcaa agtttttata gacatcccca taccatgatc
     1261 taaacttttg ataaatttac catcaatttg atctggattt tttatcatat gaagctcggc
     1321 atcaaaatca aattgtttta aatatttata aagttctaat ttctcatcag gtggagctat
     1381 ttccttatca taaaaagaat ggtagcttac ataataaggt tttggataat ttgcttgatt
     1441 ttctatatga tttagctcta atatatatct tatcattctc cttggtatgg aaaaaaagtt
     1501 atttgagctc gaattgctcg tccaaaaagt tttatctgaa caataaatat ggatatgttt
     1561 aaaaaagata cccgttccaa aacaatagta ttttgtaaaa tcaatttcct tgccaaaacc
     1621 tataagacgc caaagaaact tagcataact agaattatct atcactccat ttataagcca
     1681 aggtgcaaat ttagctgcta aatgagccaa atatcctcca tgagaactac ctatcatgat
     1741 aacgggcata ccccccccca tagtatcaaa aggtgcatga gccttaagat aaagagctgc
     1801 atttaacaaa tcttgcgcct gcattactcc aaaattttga tattcgtttt ttgttggttg
     1861 caaacttaga tgaatgctta atttaaaatt tggattaatt aatttttggt ttttttgttc
     1921 ttctaagatg tgatcaactt ctttgagtgt tgagcttaat tcttctaaag aatttaactt
     1981 atctaaatta acttgtatat ttaaagcttc acaacttgtt tttaaaataa gtttgtctat
     2041 atcatccata aaaaagcttg atccagtttg cgggcgatta cctatacaat gataattcac
     2101 acttactaca gccacattaa attcgcctgc tacaaattca gctaagtgtt cacggtaatt
     2161 ttcatccaca tctccaccaa gcccagggat gataaacact aaagctttta tttctttttc
     2221 atcatcatac caaagcttaa attcaagctt tgattctctt tttatatcaa gttctacatc
     2281 atcacaagag tcaatctcat aagttttact cactatcatt acattccccc tattaaaaga
     2341 taagttttac tggctaaatt tttaaaattc tcatttttac ttagtgccac gcaagcttta
     2401 ttttttgaat tgcttgtaaa atctaagttt tgaaattctt gtttggggtt attggctata
     2461 ttgattatgg catttttgct tgcttcatta ctagaaattc ccatcagtac aaaatcagct
     2521 ttatttataa aaacaagttt taagcattct ttctcatcgc ctacgcgaaa atttacttct
     2581 tttataccgt taaaattact aagatcaaca ttttcaaccc cgcttacatt actcatcgtt
     2641 tttatagagc ttaaatgatc attttttaaa gtataaatgc ttatatcatt gattaaagtt
     2701 ttaagattgt ttaaggattt actcacttca gcttcatctc tactagaact gaattttggc
     2761 aaagcaatcg ctgctaaaat tcctaaaatc acgataacaa aaacaagttc taatatagta
     2821 aaagctcttt tcacttttta catccttaaa aaatttttat tttttgggct taagatctcc
     2881 tcttcaagct ccacaaattc ttttctttta taagtatcaa ccccagctct tgctatcatc
     2941 aaagcattat cagagcagta ttttaaaggg gctagtttta atttactttg atatttttca
     3001 cataaatttt gcaaacgaga acgcaaattt aaattcgcac ttgctcctcc cacaacacca
     3061 aaggttttaa atttataaag attaaaaatc ttttctaatt tatccatgat atgctcacat
     3121 gctgcatttt caaatccata agcaatttct gcttttatat cttcatctaa attttcatgc
     3181 tttaaaattt ctaaacgcac cgcattttta agccctgaaa aactataagc aagctcttta
     3241 gagtgtttta aagggatgtt aaaatggata ttttttgatt tagctttttg ggctaaattt
     3301 tctataagca ctccaccagg atagcccaaa ttcatcatct tagctacctt atcaaagctt
     3361 tcgccaaagc tatcatcatt ggtccttgct aaaatttcta tttttccatc ttccttaaga
     3421 taaagaacct tagtatgccc accacttacg agcaaaattc ccatatcaag gcaaataggc
     3481 tcctctaaaa aaagactata aatatgacct ttaagatgat tgatagccat taagggcaaa
     3541 tttaggctaa gtgctaaagt ctttgccatg cttatgccac taagcaaaga aacactaagt
     3601 ccaggttcat ttgtcacagc tatggcacat aacttatcaa aatacccctt gcattgctca
     3661 agtatctttg gcaaagcctc gctatgaagt cttgctgcaa gctcaggtac cactccgcca
     3721 taaacattgt gctccatttc ttgagagatt tttttatgaa atttacactc taaagtatct
     3781 ttatcaatca ctgctataga gctatcatca caagaacttt ctatagctaa aataagattt
     3841 ttcattcaaa ttccactaaa atagaaccga taaatttatc tttagctctt gcagttctta
     3901 gcgtagcaag atcaagtatt ttagcatttt tgataagctt gctttcgaca ctattttcta
     3961 agaattgctg caaattagcc cctcttaact cataaaattc tacgcgataa atttttcctg
     4021 ccatatctaa agaataaggc ttttgcatat tttttttaga aactaaaata ttgctttcat
     4081 ccttgctatg atcaaaacct atgatattta cgcgcacatt agctatcttt ggaataagaa
     4141 aattctcttt tacttttacc ttggttccaa aaggaactgt ggtttcattg ctatcaactt
     4201 gaaaagttac ttcattaaaa gggttgctaa attcaagata ttcaggatag agccttgttt
     4261 gaaatcggtt gccgtattgg atataaaaag aattattttc agctatgacc gcggtaagtt
     4321 cattgctggt attataattt aactccttat taacaggaaa aggcacataa ttgataactt
     4381 gtcttggatt ttttaaagaa agtaaaattt tatcatcaaa aagcttgact tcgagctctt
     4441 gattgatggc tttatcaaca ccttgtgggg taagttcaaa agttctagta aattcaattc
     4501 ctgctgtttt gagatagttt tcaatagcca aaagatgata ataagccctt aaatttacag
     4561 gcaaattttt actcgcctcg ttggcaaaag cggctttgcg attggatata acaaaatatg
     4621 ttaaagcttt tagcatttca gcatcaccaa gctcttgagt tttagtattt ttaagatgat
     4681 aagcatgttt tggatcaacc aaggaagcat tgacactatt tacagtttga gtggctatgc
     4741 tttcaagatc aggatattta ctagcattga tttcatttgt atcaatcaca cttgaatttc
     4801 cccaacgctt aggattttgc atcgcatcga tataagtggg tttataaaaa ccccaaccat
     4861 cgtgaagatt gatcaccatg ctaacttcag gaagtaaaat aagctcttta atgcgtttaa
     4921 ctgtttgata atcaggatct tttggactta tgcttgcaaa tttgcgattt aaatctccat
     4981 ttttcccgcg tgagcgttta ataatgctat caaaagctaa attaggagca actatgattt
     5041 tacccttagt gatattataa tcactcaaaa gtaagcttgc cgcatgaaat ccaccaggct
     5101 catcgccttg aattcctcca aaaatcaaaa ccgtattgtt atcatctaag ctttttccat
     5161 tctctcccac gctaaattct aaatctagag caaaaagtcc gcttataaaa aaaataatcg
     5221 atataaaaaa tttcatttca ttccccttaa atactctctt gttttataat catactcaaa
     5281 aacctcatca atacttgaaa ttttaggcac accaaaatga tccaatgctt taaaaacaac
     5341 atgagcgata tctaaaaatt gtattttatg atctaaaaaa ttttgcactc caatttcgtt
     5401 agcagcattg ataatcacgc ctaaatcagg attgtttaaa agctcgtctt tgagtttaaa
     5461 aataggatat tttttcgtgc tgattttata aaattttaaa ccagaaagtt taacaaaatc
     5521 aaccggctct aaaattttac tatcatgctt agaaaaaata gcctctgata tagatagttt
     5581 catatcagcc cttgaaaaat acgccgtact tgcaccattt ttaaactcac acatggcatg
     5641 gactaaagat tttggttcga tgagagcatc gatattttta aaattataca aatgataagc
     5701 ttcgatgatt tcaaaaagtt tatttgccat tgttgcacta tctatcgtga tctttgaacc
     5761 catattccaa tttggatgct ttagagcatc tttgacactc acatgactta aatctttaat
     5821 tttgtgttta taaaaagctc cgccacttgc ggtaacataa agctttgcta tgtctttttt
     5881 accctcaagt aaaaatttca aagccgaatg ctcgctatct acgggtaaaa atttcgcacc
     5941 tttcaaaaaa ctcccagcta ctacaagact ttctttgtta gctaaagcta tgtttttgcc
     6001 aagctcttta gcctttaaag tgcttttaag tcctgcaaaa cctacaatgg cattgagtaa
     6061 aagtttgtct tgacattctg ttaaaatttg ctctaaacct tcttgcccta taaaaactct
     6121 atcgtgttta actaaatgct tattttttga atcttttatg gcaacaaatt tgggtttaaa
     6181 ccttgcgatt tgctcattta aaagagcgat gttatcccca caagctaaag cagaaatacg
     6241 aatgtttttt aaagcagcaa gtttaagagc gtttactcct atgctgcccg tgcttccaaa
     6301 aagtatcata aaagagcaac catcacaaaa gtagcgataa tcaccgcatc aattctatct
     6361 aaaattccac catgccctgg tataagatct ccactatcct ttacacccgc ttctctttta
     6421 aaataactct caagcaaatc accaatgact gcaaaaaatg ctacaaaaaa tgagcaaagc
     6481 aaagaaagcc aaaaactata aacaaaaatt cctatcaaag tgcccaaaat actcgcacaa
     6541 acaagaccac ctatcacacc ttctaaggtt ttgtttggac ttgttggaga aaaaggagtt
     6601 ttacccataa gttttccgat aaaatacgcc ccactatcac aagctgcaac gataatgata
     6661 agccaaaaaa gtgcaaacat accctgatct aaatacactt gccaaagtgc taaaataggc
     6721 aaactaggat aaatataaat aagagctggt tttaaggaag tctttttata aaccaaatat
     6781 ccaacgacta ataacaaagc taaaatccca aaaagcaaag ctttatgcga taaacttccc
     6841 aaaataaaag ctatagccaa agggataata gagatatttt ctaaagcaaa aagttttttt
     6901 gcttcactaa aagatagata caataaaacc gcaaaaacga taaaattgat aaaaaattga
     6961 tcaatcaacg cgataataat aatagcccct atcatcacaa gagctgaaat aattctagtt
     7021 gtattaaaca tatttttcct tatatactaa tatctaagcg atgaatgctt tgtgcgtctt
     7081 taaaatttgg atctttagac tcatcttctt catttttctc atcatcgctg gttttagctt
     7141 cttgattgtg ttttttcttt ttttcttctt gttcggcttt ttctttgatc tcttctttga
     7201 tttcatgagt ctcattgact ttctcaagct tgtttaaagt tttttctttt tcattaaatt
     7261 cagccatatt tagcgtagct gcaaaacctt cttttgcaag ctcattgctt gcttgtgtag
     7321 ctggataagc catattttga ttaacaaaat tcatatttcc tattgggcta actggcattt
     7381 ttaatccttt gtgatattaa tacttttaaa atttgtatat tttacaaatg ccttttgctg
     7441 aaccttaaca aaattcttta aagtataatc gacccaatat gaacctttct ttaatcctga
     7501 aaaattcacg caaagccttg cgctaaattc tatcacttct tcgctgattt tttgcttgtt
     7561 tgaaataatt aaaacatgag aacttggaat atctcttaca tgcagccaca aatcatcttt
     7621 ttttgcgctc tttagcaaat tttcattgcc tttttcattt ttacctacgc aaattttaaa
     7681 ctcattaaaa taaaaattag ctatgccatt atcttgcttg ttttcttgat ttttcttggt
     7741 gcttttttta ggcaataaaa tttcaagctc aaattcattt ttagccttgc ttaacatttc
     7801 ttttaagcca taagcaaact ctaatttttc ttttaaattt tctctttgta aatttaaatt
     7861 tctagctttt tgttctaatt ttttagcatt tttatacaat aaattagcgc tttcttttgg
     7921 acttaaatcg agtttaaatt ttactttttt tccttcaaaa tcatcaagtt caaattctct
     7981 ttcgtattct tttaaaatgc ttaaattagc aaataaaata tccgcttgct ttcttaaatt
     8041 taaagcttga tctaataaaa cttcttcttt gtctaaagca agataaagct cttttaaatt
     8101 ttctattttt ttatcgattt gagcgagttt gagtgtttga atttgcttga ttttatttgc
     8161 atgtaaaatt tcaaattttt gagtaaaata atctttaaaa ttttttattt cttcaaattt
     8221 ttcatccatt ttataaggct ttaaagactc taaaatcaca ttaggtttta caacacgata
     8281 acttttatca atatgcctta aagcctctat gatcaaatct ttttcatctg taataattac
     8341 attggtattt ttacctgtaa attcaaaata aatcttgctt tcatagctct tataagcttt
     8401 atctacctta acactaaaac acaaaatgcg attatcttga agcaatttca cctctttgat
     8461 aaaagcatta ttaaagtatt tttttagcat aaaatcaaaa ggagcgttat agtttttact
     8521 cattaatttt gcagtataaa tagcactcat tccacgagtt aaatcaaaaa taaatctttc
     8581 tctattaaag cttagctcta aaatattatc attaacacgc ttgataaaat cgattttttt
     8641 aaactgggaa aacaaatttt gtaattgcat aagttctgtg tatttcataa aagagattat
     8701 aagatatttt tgatgaattt atgatagaat tgaaataaaa aaggaaattt ttgaaacttg
     8761 aaaatttaaa ttgcgtgatt ttatgcggtg gtaaatcaag tcgtatggga gaggataaaa
     8821 gcaaattgat ttttaaaaat caaaccttaa cccaatttca agtagaaaaa ttttcaaaaa
     8881 tatttaaaaa tgtttatgtg agtgctaaag aggacaaatt tggagcaaaa tttaaactca
     8941 taaaagattg ccctgaattt gagatttatt cccccatgct tgcactttat tctatacttt
     9001 caaattttaa agatgaattt gtttttattt taagcgtgga tagtcctaat ctaagtgata
     9061 aagaactttt aaagttcttg ccttctttaa agcaagacta tcaaatcatc attgccaaaa
     9121 ctccttcaca taaacatcct ttatgcggat tttatcacag ctctgtagct cacttttgta
     9181 aaaaattgct agaaaaaaat gaacaaaaaa tcgctttatt attttctaaa gcaaagaccc
     9241 actttgtaga ttttgaggat gaaagtcctt ttttaaatct taatttttat caagaatatg
     9301 agcaatttaa aagcgagtac gagtgaaaaa aattcttttt ttgatatttt tttatagttt
     9361 ggtattttgc gatgattttg aacaagcttt agaatttgaa aaaaaaggac aatatgaaaa
     9421 agctatgcaa atttataaaa aactagcctt gcaaaattct cctaaacaag atttaaaaga
     9481 aaataatgct tctttacttt caagcataaa gcacgaaaca caaaataccc aaaaaacacc
     9541 tagcacaaaa gaggattttt cgcgcattgc tttggcaaat tatttaggag aaaattcaag
     9601 ttttaatccc cttggaatca gctcatataa gatgaattat ttcttacctt ttgcttatag
     9661 ttttggctca ttaggcgggg aaaatagaaa aactgaaatg aaatttcaac tcagtattaa
     9721 aaaaagatta tttgaagatt tgttaggatt aggtgaaaaa tattatgtag gctacactca
     9781 aacatcttgg tggcaaaact ataaacattc ctcacccttt agagaaacaa attatcaacc
     9841 tgaatttttt gtagatattc ctttgcattt tgaagattat aaatttctta ataatctaag
     9901 agtaggaatt ttgcatgaaa gcaatggcaa aggagatgag aatttagaat cacgctcttg
     9961 gaatagaatt tatgcttcaa gcgtgttttt atatcagcgt tttttatttg ttcctagaat
    10021 ttggtataga attcctgaaa acagcgaaga tgatgataat cctgaaatca cacattatat
    10081 gggaaatttt gatatcaata tagggtcttt aggaaatgat tattttataa atctcatgct
    10141 aagaaataat cttgattttc atgacaataa aggcgctgtg caagtggata taggatatga
    10201 tatttttgat aatggaattt attggtattt acaatacttc aatggctatg gagaaagcct
    10261 tatag
//
LOCUS       DBBXRO010000055        10111 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.056, whole genome shotgun sequence.
ACCESSION   DBBXRO010000055 DBBXRO010000000
VERSION     DBBXRO010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10111
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.056"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1530)
                     /gene="recJ"
                     /locus_tag="ACJFEZ_001041"
     CDS             complement(<1..1530)
                     /gene="recJ"
                     /locus_tag="ACJFEZ_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HGG0917169.1"
                     /translation="MKTIDKNEIRKILASRFEKDLHTKLCDLPLPCCLKDIYKAANRI
                     KEAIDKNEKIAIVGDYDVDGIISCVIMAEFFDDIGFDYTVRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAAFEAAKLCKEKNIDLIITDHHMPQDTLPDAFAIINPKQKDCDF
                     PDIEICGAQVAWYLIAALKEVCKLKYDMGKFLELLAIAIVADMMELRDLNRALVRRGI
                     ECINKSKRVAFKAIKQYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDLD
                     KASAYLEQIISFNESRKDEEKQLFEDSLSQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNDQRLKGSARSVGKIDILALISKANFILSNYGGHKGAAGLSLDLDS
                     FEKFKTIIKKECMEISQSEFLDTDEILGILDPNEIDFEMLEILESFEPFGHKNPRPFF
                     ILENLYVKNKKFLGKDEKHLKLILTKDNKTIEALFFNFDKEPQLYENISLLGSISKNE
                     FR"
     gene            complement(1517..3151)
                     /locus_tag="ACJFEZ_001042"
     CDS             complement(1517..3151)
                     /locus_tag="ACJFEZ_001042"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HGG0917170.1"
                     /translation="MNKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKAD
                     PYINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVI
                     EKERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIR
                     ALRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKAL
                     DRDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILNPIASILDLKNLKPNME
                     NWDILVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTRVELQWVDSEK
                     LENLESAEAFKNVSGILVAGGFGYRGVEGKIKAINYARENKIPFLGICLGMQLALVEF
                     ARHVLKIEDANSSEFDDKCSNPIVYLIDEFMDASGKKQIRTAKTPLGGTMRLGSYECK
                     VKPNSLLAKVYNNAKNIKERHRHRYEANPKYRKEFEDKGLIVSGESEGLIEAVELNNH
                     PFFLAVQFHPEFTSRLERVNPVICGFIKAAISYEDD"
     gene            3264..3887
                     /gene="thyX"
                     /locus_tag="ACJFEZ_001043"
     CDS             3264..3887
                     /gene="thyX"
                     /locus_tag="ACJFEZ_001043"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HGG0917171.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFDKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQEISRACLQEVARHRHTSPSVKSTRYTLKELRNEGEFKIGD
                     FENASRYLVLCGNEEVDNASIQALENLRLILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQDHQFIFEHCLHKDIH"
     gene            4005..5390
                     /locus_tag="ACJFEZ_001044"
     CDS             4005..5390
                     /locus_tag="ACJFEZ_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HGG0917172.1"
                     /translation="MDKQFFQMFLMFSQIQTVAIIAVLFVIFYILKKMRDKKVNFSLR
                     MLFALFIGLGFGFALQYLAQFPDSKEASAIIWYNEAKHWFGFVSSVFVAFIKMLVIPL
                     VGICIIKVIIEIDKNIKISSLLSISLFWILFSTAIAASLGILLAYNFQLGDNFTAYEG
                     TRQIREIQTFSSIILGLIPSNIISVMNKENIIAIVIFAFFVGICAKKVSKKEEYAQAF
                     QTFENFVLVFYNIMMNMTAAVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIILTYIA
                     MFIMFGVHFLFLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNP
                     AVANFVASIGTTTGLNGCAGYFPAMAAIFVAFATHTPIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGDNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKAIDKEIYNS"
     gene            complement(5422..7791)
                     /locus_tag="ACJFEZ_001045"
     CDS             complement(5422..7791)
                     /locus_tag="ACJFEZ_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HGG0917173.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTQDLCDLYGEAFEKRYEEYEKDESIAKEIVEAKELWKKILLN
                     YFETGLPFLCFKDNANKANPNAHVGIIRSSNLCTEIFQNTEPNYYKIKVVFENGDEKH
                     FDEEERVIIDGGYEKPAKKISTLDSFNGNKVYIVEKYKSDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEARIHWG
                     SDEHLNKIDEIMEKISYEAINASSNLAIEKGSYPDFEGSNWSKGIFPIDVASEKAKAL
                     TLREGLFNQSECDWDKLREKVKEDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLETWQYYTPAYELDQRILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNDIYQLAWELGVKSTYYLRSESPDSEKINIADRSIECEGCQ"
     gene            complement(7806..9134)
                     /gene="purB"
                     /locus_tag="ACJFEZ_001046"
     CDS             complement(7806..9134)
                     /gene="purB"
                     /locus_tag="ACJFEZ_001046"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0917174.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQMKESLDLILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAREVISYGKISGAMGNFAHAPLEFEEEVCKNLDLKPAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFVTADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSQRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLADEDLRKSLSEEDIRKCFDYNYYTKNVDAIFARTFK"
     gene            9214..10110
                     /locus_tag="ACJFEZ_001047"
     CDS             9214..10110
                     /locus_tag="ACJFEZ_001047"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HGG0917175.1"
                     /translation="MAYTKIKLSNNGKKAFQVLIDNLKININEAQKLIDKKRLFCDGI
                     LVEEKNKILKGDVELIVYENNPKGVEIVFENEDFAVLEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKKACVAHRLDKETSGLILVAKHKKAQIELKTMFEKKQIQKEYLALASGEIK
                     VNFIVDQAMDLTKDYDDVKTRMQICENGKKAITEFEVLSFYPKLNATLLLCKPLTGRQ
                     HQIRVHLFYKNHKILGDPLYGLEKKDIEKILDDKMDIEERIKLSGAKRLCLHSYRLKF
                     NYNGENFDIFSKKGMEKILAAF"
BASE COUNT         3234 a         1895 c         1465 g         3517 t
ORIGIN      
        1 tctaaattca ttcttagaaa tacttccaag caaactaata ttttcataca attggggttc
       61 tttgtcaaaa ttaaaaaata aagcttctat ggttttatta tcttttgtga gtatgagttt
      121 tagatgcttt tcatcttttc ctaaaaattt tttattttta acataaagat tttccaaaat
      181 aaaaaaagga cgcggatttt tatgcccaaa aggctcgaaa gattctaaaa tttcaagcat
      241 ttcaaaatcg atttcattag gatctaaaat acctaaaatc tcatctgtgt ctaaaaattc
      301 gctttgagaa atttccatac attctttttt tattatggtt ttaaattttt caaaagaatc
      361 aagatctaaa ctaagacctg cagcaccctt atgcccgcca taattactca atatgaaatt
      421 tgccttagaa atcaaagcta aaatatcaat ttttccaaca cttcttgcac ttccttttaa
      481 gcgctgatcg ttttgtgaaa atacaaaagc gggtttattg aaatgttttg ctaaacggct
      541 tgctactatc cctaaaactc cctcatgcca atttaaaccc gatacaacaa tacaagaatc
      601 attttcatca atttgactta aactatcttc aaaaagctgt ttttcctcat ctttacggct
      661 ttcattaaag ctaatgattt gctctaaata agccgaagct ttatccaagt cctttgtatg
      721 taaaaattca taagaaatgc ttgcatcatc cattcttcca gcactattga taagaggagc
      781 gattaaaaat cctatattat cgagtgcaaa tttatctttt tgataatatt gcttaatcgc
      841 cttaaaagca actcttttgg atttgttaat acactcaatc cctcgtctaa ccaaggctct
      901 atttaaatct cttaattcca tcatatctgc aacaatggca atagctagaa gttctaaaaa
      961 tttacccata tcgtatttta atttacaaac ctcttttaaa gcagctatta aataccaagc
     1021 cacttgcgct ccgcaaattt caatatctgg aaaatcacaa tctttttgct taggattgat
     1081 aatcgcaaag gcatcgggta aagtatcttg aggcatatga tgatcagtta taattaaatc
     1141 aatatttttt tctttacaaa gcttggctgc ttcaaaggct gctataccat tatccactgt
     1201 aataatcaaa tttacatcaa gttcattgat aatttcagca tttaaaccgt atccatcttt
     1261 aaagcggttg ggaattctta ctgtataatc aaaacctata tcatcaaaaa attctgccat
     1321 aataacacaa gagataatcc catcaacatc ataatcaccc actatagcga tcttttcatt
     1381 tttatctata gcttctttaa tgcgatttgc cgccttgtaa atatctttta agcagcaagg
     1441 caaaggtaaa tcgcaaagtt tggtatgtaa atctttttcg aaacgagaag ctagaatttt
     1501 tctaatttca tttttatcaa tcgtcttcat agcttatagc cgccttgata aaaccacaaa
     1561 tcacaggatt tacacgctct aatcttgagg taaattcagg gtgaaattgg acagctaaaa
     1621 agaaaggatg attgtttaac tccacagctt ctataagccc ttcactctct ccacttacta
     1681 tcaagccctt atcttcaaat tctttacgat attttggatt ggcttcatag cggtggcggt
     1741 ggcgttcttt gatatttttt gcattattat aaaccttagc taaaagggag ttaggcttga
     1801 ctttacactc ataagatccc aaacgcatag ttccacctaa aggtgtttta gcagtacgaa
     1861 tttgtttttt accgctcgca tccataaatt catcgatgag ataaacgata ggattggaac
     1921 atttatcatc aaattcactc gaatttgcat cttcaatttt taacacatgt ctagcaaatt
     1981 ctaccaatgc aagctgcata cccaaacaaa ttcccaaaaa tggaatttta ttttctcttg
     2041 cgtaattgat agcctttatt ttaccctcta ctccgcggta accaaagccc cctgcaacca
     2101 aaattccact cacattttta aatgcttcag cactttctaa attttcaagc ttttcactat
     2161 ctacccattg aagctctact ctagtatcaa gcgctgcacc tgcatgaatg atagcttctg
     2221 taagactctt atagctttct tttagatcta catatttacc cacaaaagcg attttgactt
     2281 cattacttgg agctataact ctttttacta ggatatccca gttttccatg tttggtttta
     2341 aatttttcaa atccaaaata gaagcgatag gatttaaaat atcttgcttt aagaaattta
     2401 gtggaatttg ataaatactt gctgcatcaa cactttctat aacgcaattt ttttctacac
     2461 cgcatgaaat agcgatttta tcttttaaat ctctatctaa cgctttttca ctacggcaaa
     2521 taatcatatc aggactaatg cctatgcgtc ttagttcacc tacgctgtgt tgggttggtt
     2581 tggtttttaa ctcccctgca gccttaataa aaggcactag ggttaaatga atattcatag
     2641 cattattttt acccacttct aaacgcaaag cacgaatagc ttctaaaaac ggcaagccct
     2701 cgatatcccc gacagttcca cctatctcta cgattaagat atccttgcct tctcctgctt
     2761 ttttaatacg atctttaatc tctcctacga tatgtggaat aacttggatg gttttgccaa
     2821 gatattctcc gcgtctttct ttttcaatca cgctttgata aacgcgtcct gtggtgaaat
     2881 tgttatcttg cgataaactc tcatccaaaa aacgctcata atgccctaaa tcaagatcgg
     2941 tttctgctcc atcatctgta acaaaaactt ctccatgctc aaatggactc atggtgccag
     3001 gatcaacatt tatataagga tctgctttta aaatacttac tttaagtcct gaatttttca
     3061 ataaagttgc aatacttgca gctgctattc ctttgcctaa ggagcttaac actcctcctg
     3121 taacaaaaat atatttggtt tgtttattca ttattaataa gccttaattt tttgtctaat
     3181 tataactcga taaaactttt tatttcatta gaattttaag taaaaaatgt aagaattata
     3241 aaaaaattta tcaaggaaaa tttatgcaaa tcactttact ttttcatacc cctctttctg
     3301 tatgttcgca tgcaacaaga acttgttggc aaagttttga taaaggagat tgtggtggag
     3361 aaaaagataa agaactcatc gatcgcgtag gaaataaatt taaacatgcc tcaaccttag
     3421 agcatttaaa ttatactttt tatattcaag aaatttcaag ggcttgctta caagaagttg
     3481 ctagacatcg ccatacaagt cctagtgtta aaagcacgcg ctacacccta aaagaacttc
     3541 gcaatgaggg tgaatttaaa ataggagatt ttgaaaatgc aagccgttat cttgtccttt
     3601 gtggcaatga agaagttgat aatgctagca ttcaagcttt agaaaattta cgccttattt
     3661 tacaaaaaag tataagcttg gatatagcca aatactgctt acctgagagt tataaaaccg
     3721 aacttacttt aacaatcaat gctagaagtt tgcaaaattt tatttctttg cgtagctcaa
     3781 aatctgctct ttgggagatt cgaaatttgg ctaatgcttt atttgaagcc ttaccacaag
     3841 atcatcaatt tatttttgag cattgtttgc ataaagatat tcattaaatc atactaattt
     3901 tatcttattt ataatatttt tatggtatca tccataagat caagatttta tggatatact
     3961 ttaaatatat ttcatacttg atatagtttc ttaaaggact ttttatggat aaacaatttt
     4021 ttcaaatgtt tttaatgttc tcgcaaatac aaactgtagc tattattgct gtgctttttg
     4081 taatttttta cattcttaaa aaaatgcgag ataaaaaggt aaatttctcc cttcgtatgc
     4141 tttttgctct ttttataggc ctaggctttg gttttgcttt gcaatatcta gctcaatttc
     4201 cagatagcaa agaagcaagt gctatcattt ggtacaatga agcaaaacat tggtttggtt
     4261 ttgtaagctc tgtttttgta gcttttataa aaatgctagt tattccgctt gtgggtattt
     4321 gtatcattaa agtgattata gaaattgata aaaatataaa aatttcttcc ttgcttagca
     4381 taagcctctt ttggatactt tttagtactg ctatagctgc ttctttgggt atattattgg
     4441 cttacaattt tcaattaggt gataatttta ctgcttatga aggaacgaga caaattcgcg
     4501 aaattcaaac tttttcaagt attattttag gtttaattcc tagcaatatc atttctgtta
     4561 tgaataaaga aaatatcata gccattgtaa tttttgcttt ttttgtggga atttgcgcaa
     4621 aaaaagtttc aaaaaaagaa gaatatgcac aagcttttca aacttttgaa aattttgtct
     4681 tagtttttta taatattatg atgaatatga cggctgcagt gattcgattt atgccttatg
     4741 ctgtagtttg tatgatggca aatgttttac taagcaatgg ttttgaagca atcaaaactg
     4801 caggactttt tatcattctt acctatatag caatgtttat aatgtttggt gtgcattttt
     4861 tatttcttgc ttctcaagga ctaaatccta taaaatacgc aaaaaaagct tttcctgtat
     4921 ggctgtttgc attcagttca agatcttctt tagggacttt accgatgacg acttcaactt
     4981 tgcaaaacaa atttggagta aatcctgccg tggctaactt tgttgcctct ataggaacaa
     5041 caacgggact taatggttgc gcgggttatt tcccagctat ggcagcaatc tttgtggcat
     5101 ttgctacaca cacgcctata gattttactt ttgctttgat gatagtatta gtagcggtta
     5161 ttggatcttt aggtattgct ggagttcctg gaagtgcaac tatggcagct tctattatgc
     5221 tcgcaggaat tggatttggg gataattttg ttatgcttag ccttatttta gctattgatc
     5281 ctatcattga tatggcaaga acagccagta atgtttcagg ggctatgacc tcagcgcttt
     5341 gcactgcaaa aaatttaaaa gccatagata aagaaattta taattcttaa aaagatttaa
     5401 acctaatata ggtttaaatc tttattggca accttcacat tctatgctac gatcagcaat
     5461 atttatcttt tcgctatcag ggctttcact tcttagataa taagtcgatt ttactccaag
     5521 ctcccaagct aattgatata tatcatttaa gtaacccccg cttgctttat cgagtgataa
     5581 aaagatattt aaactttgcc cttgatctat ccattttcca cgcactgctg cagctttaac
     5641 aagaattctt tgatcaagtt cgtaagctgg ggtataatat tgccaagttt caagacttaa
     5701 attaggcact acaacaggta tcataccgct taaattttgc tcaaaccact tacgcttata
     5761 aacaggttcg atagtttgtg ttgttcctac caaaatagaa attgaagaag taggagcaat
     5821 ggccatcaaa taaccatttc tcataccatc ttcttttact ttttccctaa gcttatccca
     5881 atcacattcg ctttgattaa acaacccttc tcttagggtt aaagctttgg ctttttcact
     5941 tgctacatca ataggaaaaa tccccttact ccaatttgat ccttcaaaat cagggtaaga
     6001 gcctttttct atcgctaaat ttgagcttgc attaatagct tcgtagctaa ttttttccat
     6061 aatttcatca attttattta aatgctcatc actaccccaa tgaattcttg cctcagcgag
     6121 catttgtgcc tcacccataa cgccaagtcc tatggcgcga gattttaaat tggtatcctt
     6181 tacttttcta tgagggtaaa agtttaaatc aataacatta tcaagcatac gaatagcagt
     6241 tggcaccacg cgttctatat cttctttagt atatactttg ctaagattta tactggctag
     6301 attacaaact gcagtttttc catcgctttt gtatttttct acgatataaa ccttgtttcc
     6361 attaaaacta tcaagcgttg aaattttctt agcaggtttt tcatatcctc catcgataat
     6421 aacgcgttct tcttcatcaa aatgtttttc atcaccattt tcaaatacaa ctttgatctt
     6481 ataataattt ggctctgtat tttgaaaaat ttctgtacat aaatttgaac ttctgataat
     6541 ccctacatgc gcatttggat tggctttatt tgcattatct ttaaagcata aaaaaggcaa
     6601 gcctgtttca aaataattaa gcaaaatctt tttccaaagc tctttagcct ctactatttc
     6661 tttagctata ctttcatctt tttcgtattc ttcataacgc ttttcaaaag cttctccata
     6721 taaatcacac aaatcttgtg tatctgcagg atcaaaaaga gtccatttat cgtttgctct
     6781 cactcttttc ataaaaagat cgttaatcca caaagcaggg aaaagctcgt gtgcacggcg
     6841 tctttcttcg cctgaatttt tacgcaaatc gataaaatca cttacatcca tatgccaagg
     6901 ttcaatataa acagcgatcg caccctttct tgtgccaagc tgatctacag ccacagctat
     6961 atcattggtg atttttaaaa aaggaatgat acctcctgcg gcatttttat gcccatctat
     7021 gcttccaccc attgcgcgaa ctttagacca atcccagcct atacctccac caaatttaga
     7081 caataatgcc atttcttggt aagaatcaaa aattccctcg atattgtcag gagttgagcc
     7141 tatataacaa gagctaagct gatggcgtgt tgttcttgcg tttgataaag taggagttgc
     7201 aagcatgagt tcaaatttag agatgagatc ataaaatttc tttgcccatt cttgaggatt
     7261 aaattcattc tgtgctaaaa acatagcaat agccataaac atttgctgag gaagctctat
     7321 aggcataccc ttgctatctt taatcaaata tctatcatat agagttttaa tgccaagata
     7381 agtaaattgc atatcgcgtt caggcttaat ataatcattt aaatcatcta aatcatattt
     7441 ttctttaagc ccaagtaaaa ttctaccttc cttttcgccc ttttcaaaat actcacgcaa
     7501 atgattatag cgattcattc cattcacttt tttatacaag tcaaacaaaa aaagtctagc
     7561 tgcgacaaag gtccagtttg gacaatcaat atcgatttta tctacagcag ttttaatcaa
     7621 tgttttttga atttcttcag ttgaaattcc atctcgaaat tgaattttag catcaagctc
     7681 gagctcgctt agattaacgc cttctaaatc ttttatagca tcaaaggtgc attttttgat
     7741 cttagaaacg tctaattctt ctgtgcgacc atttctttta ataactttca ttgtattcct
     7801 tgtccttatt taaaagttct tgcaaagatt gcatcaacat tttttgtgta ataattataa
     7861 tcaaaacatt ttcttatatc ctcttcactc aagctttttc tcaaatcctc atcagctaaa
     7921 agtgcaagta aaaataagct ttcatttttt tcattgatag cagctttgcc attttgcaaa
     7981 tcagcccaaa ctttcatcgc atttctttgg actattttat aagcttcttc acggctaatg
     8041 cccttaaatg gaagctctaa taaaacgcgt tgtgaaaata cgagtccacc tgtaagattt
     8101 aaatttttca tcatattttc aggataaacc aaaagcttat cgatcaaatt tgtaagacgc
     8161 atgagcataa aatcagctgt aacaaaggca tcaggcaaga taaatctttc aacacttgaa
     8221 tgcgatatat ctctttcgtg ccataaagct acattttcta aagcaggagt tacaaaggat
     8281 ctaagcacac ggcaaagccc tgtgatattt tcacttaaaa ccggatttct tttatgtggc
     8341 atagccgaac ttcctttttg ccccacgcta aaatactctt cagcctcata tacttctgtt
     8401 ctttgaaaat gtcttatcgc aacagcaatt tgctcgcacg atgaagccaa aatcgcaatg
     8461 gctgaaatca cttgtgcgta acgatctctt tggatcactt gatttgaaac aggtgcaggt
     8521 ttaaggtcta aatttttaca tacttcttct tcaaattcta aaggagcatg agcaaaattt
     8581 cccattgcac cactaatttt tccataactt atcacttctc ttgcatgctc taaaagctct
     8641 tttgcatgca aaatttcatc ataccaaata gctaacacta aaccaaaagt gataggctct
     8701 ccatgaattc catgacttct acctaccatt aaagtatttt tatgttccaa agcgcgtttt
     8761 ttaatcactt ctaaaagcaa agaaacatct tctaaaatca aatccaaact ttctttcatc
     8821 tgtaaagcta cagcggtgtc gatacaatca gaacttgtca tcgcataatg tacaaagcgg
     8881 ctttcctctc ctaaactttc acttacgctt gtaagaaaag caatcacatc atgcttggta
     8941 gttttttcta tctcatcaat tctagctata tcaaatttag catttttaag aattttttca
     9001 caatctgtat catttataag gcctagttta ttccaagctt ttacagcagc tagctctact
     9061 tttagccatg catcatattt tgcttgcata tcccattttt tggccatgat ttctctgcta
     9121 tatctttcaa ccatctttga aaccttttta gctataattt ttttaaaaat gaaaatggaa
     9181 ttttatctaa aaaaatttag agaaaggtta agtttggctt acacaaaaat aaaactatca
     9241 aacaatggaa aaaaggcgtt tcaagtcctt atagataatt tgaaaatcaa tataaatgaa
     9301 gcccaaaaac tcatagacaa aaaaagactt ttttgtgatg gaattttagt agaagaaaaa
     9361 aataaaatct taaaaggcga tgtagaatta atagtctatg aaaacaatcc caagggagta
     9421 gaaattgttt ttgaaaatga agattttgcg gtacttgaaa aagaaagtgg aattttaagt
     9481 catcctaatg gcagacactg caaatacagc cttagtgatg aaatttggca cctttggggt
     9541 aaaaaagcgt gcgtagccca taggcttgat aaagaaacaa gtggactcat actcgtagcc
     9601 aaacacaaaa aagcacaaat tgaacttaaa actatgtttg aaaaaaaaca aattcaaaaa
     9661 gaataccttg cccttgcaag tggagaaatt aaagtaaatt ttatagtcga tcaagcgatg
     9721 gatttaacaa aagattatga tgatgttaaa actagaatgc aaatttgtga aaatggaaaa
     9781 aaagcaatca cagagtttga ggttttgagc ttttatccta agctcaatgc tacacttttg
     9841 ctttgcaaac cactcacagg cagacaacac caaattagag tgcatttatt ttataaaaac
     9901 cacaaaattt taggcgatcc actctatggc cttgaaaaaa aagatataga aaaaatttta
     9961 gatgacaaaa tggacataga agaacgcata aaactaagcg gtgctaaacg cttgtgtttg
    10021 cattcttatc gtttaaaatt taactataac ggagaaaatt ttgatatttt ttcaaaaaag
    10081 ggtatggaaa aaattttagc agcattttaa a
//
LOCUS       DBBXRO010000056        10062 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.057, whole genome shotgun sequence.
ACCESSION   DBBXRO010000056 DBBXRO010000000
VERSION     DBBXRO010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10062
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.057"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..129
                     /locus_tag="ACJFEZ_001048"
     CDS             <1..129
                     /locus_tag="ACJFEZ_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0917176.1"
                     /translation="SVAQIDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
     gene            427..2208
                     /locus_tag="ACJFEZ_001049"
     CDS             427..2208
                     /locus_tag="ACJFEZ_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HGG0917177.1"
                     /translation="MQRRVFLKGSALGSMVAFFGGSNLSAVVLKDKELLGFKAVSAST
                     KDEVIVPEGYEAKVLISWGDPLFSKAKAYDESKNIDMNAVDNARFVFGDNNDGMSFFS
                     LSKNRGILAINNEYINPEIMFNHQGKNLSKEDVLYEQASVGVSVLEIQKKGNEWAVVL
                     DSKYNRRIDANTKMEVSGAAKKEVLKDKKFAYGTFANCANGQTPWGTYISCEENFDDY
                     FGSSDENLKFDENFKRYGFKTKSEYGWEKFDERFDLAKNLDEANRFGWIVEINPFDAK
                     STPIKRTALGRFKHENAEFIVEKDGLVIVYMGDDEIDEFIYKFVSKHKYVKGGDTSKI
                     LDEGTLYVGQFNGNVGDFRGSGKWIALEYGKNGLDESKGFKSQADILINTRLAASVVG
                     ATPMDRCEWIASHKESGSREVFATLTNNKNRTQANAANPRTKNLYGQILKWIPKNSHK
                     DDEFTWEIFTLVGNPDNQKGLNKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KGEYAGMGNNCMLAANPKTGEIKRFLTGPIACEITGIAFDEDYITMFVGIQHPGEGLK
                     GSTFPYGKTPRSSIVMIRKLDGGVIGA"
     gene            complement(2333..3271)
                     /gene="trxB"
                     /locus_tag="ACJFEZ_001050"
     CDS             complement(2333..3271)
                     /gene="trxB"
                     /locus_tag="ACJFEZ_001050"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HGG0917178.1"
                     /translation="MLDVAIIGGGPAGLSAGLYTTRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQISKNEDGSFTIRLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASIDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVNLKMQTNVPGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3407..3721)
                     /gene="trxA"
                     /locus_tag="ACJFEZ_001051"
     CDS             complement(3407..3721)
                     /gene="trxA"
                     /locus_tag="ACJFEZ_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HGG0917179.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(3776..4114)
                     /locus_tag="ACJFEZ_001052"
     CDS             complement(3776..4114)
                     /locus_tag="ACJFEZ_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HGG0917180.1"
                     /translation="MGFASYLSGILGEDKACEFLKKQKFEILKRNFRSKFGEIDIIAK
                     KDGILHFIEVKFTQNNYEVSERLNVKKYEKILKTIEFYELKHGILDDFQMDLICISDD
                     MIQFFENISF"
     gene            complement(4114..5364)
                     /locus_tag="ACJFEZ_001053"
     CDS             complement(4114..5364)
                     /locus_tag="ACJFEZ_001053"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HGG0917181.1"
                     /translation="MKVAILGYGVVGSAVARVLIQNKEIIRARCGQDIIPVVALAKSQ
                     KENALIPIVTNVDEILQRDDIDVFVELMGGVETPFKIISEILKKNKPVVTANKAMLAY
                     HRYELEELAKNTTFGYEASVAGGIPIIKALKEGLSANNILSIEGILNGTSNYILSAMN
                     SKGLNFDDVLKKAQELGYAEADPTFDIEGQDAAHKLLILASIAYGLRAKPEDILIEGI
                     SKISAEDMYFAKEFDFTIKLLGIAKAQNSIVELRVHPTMISKDKMIAKVDGVMNAISI
                     VSDILGESLYYGAGAGGNATASAVIADLMDIARNEPKGPMMGFENNLNFKLLNRDEIY
                     TKYYLRLKVEDKTGVLSKITQLMSENNISIDSFLQKPKQGETYSTLFFTTHHTFEKSI
                     QNLLSILEKQDFIKAKPFMMRIEE"
     gene            complement(5366..6571)
                     /locus_tag="ACJFEZ_001054"
     CDS             complement(5366..6571)
                     /locus_tag="ACJFEZ_001054"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HGG0917182.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGKDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYGVNLDPESEVVATM
                     GSKEGFVNLARAIINPGDVAIVPAPAYPIHTQAFIIAGGNVAKMPLKYNEKFELDENK
                     FFEDLDKTLHESIPRPKYVVVNFPHNPTTVTCEKSFYERLVATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEVEGAKDVAVETYTLSKSYNMAGWRVGFTVGNKRLVAALKKIKSW
                     FDYGMYTPIQVAATIALDGDQSCVDEIRATYDKRMHILLEAFENAGWKLHKPRASMFV
                     WAKLPESKMYLKSLEFSKQLLQHAEVAVSPGIGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKEE"
     gene            complement(6584..7390)
                     /locus_tag="ACJFEZ_001055"
     CDS             complement(6584..7390)
                     /locus_tag="ACJFEZ_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917183.1"
                     /translation="MVKKIFIFLFLANSVFAVSSLELAKNLVANPSKDSQLRLLFPSS
                     SYMDNKGNPDIAKISRILKTNSLINLTLPEPRTLKLNFKAKADSVVFFKILTDALTNL
                     GYIYFIPTDMILRDGNIDYTIQVESQYILDPGALYALLKDNSVYIDNIKRIGTYDYEY
                     DLNFENAQLNTNIDLKLNSTQALERPLKDYVFTLQGASNLMIDAHDADFWFPKVLFLD
                     KNLNLIKAVKSQAQNNHFSELIPSGAVYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(7384..8331)
                     /locus_tag="ACJFEZ_001056"
     CDS             complement(7384..8331)
                     /locus_tag="ACJFEZ_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917184.1"
                     /translation="MLNWKKIEDLNLKEVAARTKIELEFLEALVKKDFATLNRFNVRG
                     FVKILSREYELDFTDFNEEFETYLNENNLNDTTTKPKMITPKLDAYSQKSTSFVSFII
                     IVIIIALIGFGIYYFDYIKSFFQKDQNNSSAAVVDIIGKAQSNLKALENNVVVIDNQA
                     EENETEANLTQIQNTELNNTKEEIKQISTTPNNTNANEENLSTNDSLATTNQEVAEVS
                     KALNKEAHFKASGKIWIGLIDLSNYRKTGLVKENDFNLSLEVNRLVLTGAAALSVFDE
                     NGKEQKFPAGNSKRFLIKDGKITSISAAEFMKLNKGKEW"
     gene            complement(8324..9007)
                     /gene="rlmB"
                     /locus_tag="ACJFEZ_001057"
     CDS             complement(8324..9007)
                     /gene="rlmB"
                     /locus_tag="ACJFEZ_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HGG0917185.1"
                     /translation="MIVYGKQIFFYILERHKELINELYLAKECDKETFKKIASSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKEYEFKDLHTLKKGEFIAILYGISDVGNIGAIVR
                     TAYALGVDGLIFIGERLAMEGVIRTSSGAALDLEIALNNDIFTVLNELKQVGFKLFAS
                     ASGGKQIHHYKVDKGKKALILGSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAFA
                     ILCDRMINA"
     gene            complement(9020..9844)
                     /gene="rsmI"
                     /locus_tag="ACJFEZ_001058"
     CDS             complement(9020..9844)
                     /gene="rsmI"
                     /locus_tag="ACJFEZ_001058"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HGG0917186.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDIFFCEDTRVSKSLLSLL
                     SSKFEIDFGDKKFISFHTHNEKKVLENLDLEFFNQDIAFLSDAGMPGISDPGQFLIDF
                     ALENDIQFEVLPGANAALVALVSSALCEKEFIFMGFLANKGKERQKDIQKILNHPYPS
                     VIYESPKRILSLIEQIAILDSQREVFVIKEISKKFEAKFKGKAIDLFNELKQVNLKGE
                     WVVVLAKNDKDNISHSLCENDILELEIPLKTKSKLLAKMNGKNPKEIYQKLLLSQS"
     gene            complement(9847..10047)
                     /gene="rpmE"
                     /locus_tag="ACJFEZ_001059"
     CDS             complement(9847..10047)
                     /gene="rpmE"
                     /locus_tag="ACJFEZ_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HGG0917187.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFVTKSNKSELRVDICSSCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
BASE COUNT         3318 a         1735 c         1479 g         3530 t
ORIGIN      
        1 agtgtagctc aaattgatca aaccactaag gataatgtag agattgctaa tgaatcagct
       61 attatttcta gtacagtaag tgatatagct aataacatac ttgaagatgt gaaaaagaaa
      121 aggttttgat taaactaata tgaaatattg attttacata ttagtttata tgttggctaa
      181 tatatacaat ttagattgat atgcaagtat caatctaaag attttgattt gttgatactt
      241 ttatttatta ctcattgata tctttaattc attattcacc aatacctaga taggttgggt
      301 gttgatgaaa tttatttaca aattcttctt atatatttct tatcttactt atttgaaagt
      361 ttctaaaaag tttccaaaca tttctatact ttcattgttt taatttcaat acggagtaga
      421 aaacaaatgc aaagaagagt atttttaaaa ggttcagctt taggttctat ggtggctttt
      481 tttggaggtt caaatttaag tgctgtggta cttaaggata aagagttgtt aggttttaaa
      541 gctgtaagtg caagcacaaa agatgaagtc atagtgcctg agggctacga ggctaaagtt
      601 ttgatatcgt ggggagatcc actttttagc aaagcaaaag cctatgatga aagtaaaaat
      661 atcgatatga atgcagtgga taatgctcgc tttgtttttg gagataataa tgatggtatg
      721 agtttttttt cactttcaaa aaatagagga attttagcca taaataatga atacattaat
      781 cctgaaatta tgtttaatca tcagggtaaa aacttgagca aagaagatgt tttatatgag
      841 caagcaagtg tgggtgtaag tgtattagaa attcaaaaaa agggtaatga atgggctgta
      901 gttttggatt ctaaatacaa tcgtagaatt gatgcaaata ctaaaatgga agtaagcgga
      961 gcagctaaaa aagaagtttt aaaagataaa aaatttgctt atggaacttt tgcaaactgt
     1021 gcaaatggcc aaactccttg gggaacttat attagctgtg aagaaaattt tgatgattat
     1081 tttggaagtt ctgatgaaaa tttaaaattt gatgaaaatt ttaagcgata tggctttaaa
     1141 acaaaaagcg aatacggctg ggaaaaattt gacgaaagat ttgatctagc taaaaattta
     1201 gatgaagcaa atcgttttgg ttggatagta gaaatcaatc cttttgatgc aaaaagcact
     1261 ccaattaaaa gaacagcctt aggtcgcttt aaacatgaaa acgcagaatt tatagtagaa
     1321 aaagatggtt tggttatcgt ttatatgggc gatgatgaaa tcgatgagtt tatttataaa
     1381 tttgttagca agcacaaata tgtaaaaggt ggagatacaa gtaaaatttt agatgaagga
     1441 actttgtatg taggccaatt taatggcaat gtaggggatt ttagaggcag tggaaaatgg
     1501 atagctttag agtatggtaa aaacggctta gatgaaagta aaggatttaa atcacaagct
     1561 gatatactta tcaatacccg ccttgctgca agtgtagtgg gtgcaactcc tatggataga
     1621 tgcgagtgga tagcaagcca taaagaaagt ggctctaggg aagtttttgc tactttaacc
     1681 aataacaaaa accgtacaca agctaatgca gctaatccta gaacaaaaaa tctttatggg
     1741 caaattttaa aatggatacc aaaaaattca cacaaggatg atgaatttac ttgggaaatt
     1801 tttactcttg tgggcaatcc tgataatcaa aaaggtttaa acaaagggtc aaataatatc
     1861 actagtgaaa ataaatttaa ttctcctgat ggacttaaat ttgatagaga tggaagactt
     1921 tggatacaaa cagatggttc ttattctaat aaaggcgaat atgcgggaat gggaaataat
     1981 tgtatgctag cggccaatcc aaaaacaggt gaaatcaaac gctttttaac agggcctata
     2041 gcttgtgaga taacaggaat tgcttttgat gaggattata ttactatgtt tgtaggtata
     2101 caacatccag gagaaggact taagggtagt acttttcctt atggaaaaac accaagatca
     2161 agtatagtaa tgataagaaa acttgatggt ggagttatag gagcttaatt aaagatctaa
     2221 agaacttata ataatatctc ttttatccca aagattaaat aagatcaaaa ttataagttc
     2281 ttctttattt agattgtttt aagtcttaaa aaatctagga caaattccta gattaatgca
     2341 agctttctat ataagccata gcactaagcg ctgctacggc tccatcgcct gcggcacaaa
     2401 taacttgttt tggagcatct tttctaagat ctcctgctgc aaaaagccca ggaacattag
     2461 tttgcatttt aagattgaca cttacttgcc cgccttcttc catattgcac aaaaacttac
     2521 catcgtcttg ttttaaaatt tcatttctta cattaagtcc cacaaaggtg aaaattcctg
     2581 gcacatttaa atctctaatg ctaccatctt ttaattttac tttcacgcct gtaacaccca
     2641 ttttatcacc atatacttca tctatgcttg cactagtgat aagttcgatt ttttcatttt
     2701 tcttcacttt ttctactgta gaaggcgcag ctctaaattc gtccctacgg tggattagat
     2761 aaactttaga gcaaatattg gctagatata atgcttcttc taaagcagta tcaccaccac
     2821 ctaaaaccgc tacttcttta tttttataga aaaaaccatc acaagttgca caagtgctta
     2881 cacccttgcc aaaaaattca tcctcacctt taaaacctgc tctttttgga gcagaaccag
     2941 tgcaaactat cactgctttt gcaagttctg ttttaccgcc ctctagtcta atggtaaaac
     3001 ttccatcttc attttttgaa atttgttcta cacctaccat ttcatgcttt aagccaaaac
     3061 gcatacattg ctcactccaa ggtgccataa aagaaattcc atccataact tgtgcaacac
     3121 ctggataatt ttcaatttcc gaactagaag taatttgccc tcctggcatc cctttttcaa
     3181 acattactac atttttaaga ccacccctag ttgtgtaaag tccagcacta agtcctgcag
     3241 gtcctccacc tataattgct acatctaaca ttctttttcc tttgtaattt gaattttatt
     3301 aagaatgata tacaaattat tcttaatagt agttaataaa aattattatt tagtataaat
     3361 ttgaaatttt tgaataaaag gctagtaaaa ctagccttga agatttttat agtaaagaat
     3421 ttaatttatc gctgattgct tgttttgatt gagcaccaac taattgatct accacttcac
     3481 catttttaaa gaagataaga gtagggatag agcgaacgcc aaattcagct gctaaatcgc
     3541 cttgctcatc tgtatttact ttacaaattt ttgctttacc gtcaaagtca ttcgcaagct
     3601 catcaattac tggagcaagc attctgcaag gtccacacca tggagcccaa aaatcaacta
     3661 aagcaacacc ttcttttgct tgtgcaaaat tatcacttgt taattcgata tattttccca
     3721 taatttttcc tttcactaat ttttgtaatt gtattttatt tttttaaata ttagcttaaa
     3781 aactgatatt ttcaaaaaat tgtatcatat catcactaat acagataaga tccatttgaa
     3841 aatcatctaa aatcccatgt tttaattcat aaaattctat agtttttaaa attttttcat
     3901 attttttaac atttaagcgt tcagaaactt cataattatt ttgagtaaat ttaacctcga
     3961 taaaatgtaa aattccatct tttttcgcaa tgatatcaat ctcgccaaat tttgaacgaa
     4021 aattacgctt taaaatttca aatttttgtt tttttaaaaa ttcgcaagcc ttatcttcgc
     4081 ctaaaattcc actaagatat gatgcaaatc ccattattct tctatgcgca tcataaaagg
     4141 cttagccttg ataaaatctt gtttttccaa gatagaaagt aaattttgaa tacttttttc
     4201 aaaggtatga tgagtggtaa aaaataaagt gctgtaagtt tcaccctgtt ttggtttttg
     4261 caaaaagctg tctatcgaaa tattattttc gctcataagt tgagtaattt tagataaaac
     4321 tcctgtttta tcttctactt ttaatcttaa ataatatttt gtataaattt catctctatt
     4381 taaaagttta aaatttaaat tattttcaaa gcccatcata ggacccttgg gttcatttct
     4441 tgctatatcc ataagatcag cgataacagc acttgctgta gcatttcctc ctgcacctgc
     4501 tccataataa agactttcgc caagtatatc actgactatg ctaatagcat tcatcacccc
     4561 atcgactttt gctatcattt tatctttact gatcatagta ggatgcactc ttaattctac
     4621 tatggaattt tgggctttag ctatgcctaa aagcttgata gtaaagtcaa attcttttgc
     4681 aaaatacata tcttcagcag aaattttact gataccttcg attaaaatat cttcaggttt
     4741 agcgcgtaaa ccataagcaa tgcttgctaa aatcaaaagc ttgtgcgcag catcttgccc
     4801 ttctatatca aaggtcggat ctgcttctgc ataaccaagt tcttgcgctt tttttagcac
     4861 atcatcaaaa tttaaaccct tgctattcat agcgcttaaa atataattgc tcgtgccatt
     4921 gagtatacct tcaatactca agatattatt tgcgcttagt ccttctttta aagctttgat
     4981 aataggaatt ccgcccgcaa cacttgcttc atagccaaaa gttgtatttt tagctaactc
     5041 ttcaagctca tagcgatgat aagcaagcat agctttgttt gcagtgacta caggcttatt
     5101 ttttttaaga atttcactga taattttaaa aggtgtttca accccaccca ttaattccac
     5161 aaaaacatct atatcatctc gttgcaaaat ttcatctaca tttgtaacga taggaatcag
     5221 ggcattttct ttttggcttt tagcaagagc aacaacagga atgatatctt gtccgcatct
     5281 tgcacgaatg atttctttat tttgaattaa aacacgagca acagcactcc ctacaacccc
     5341 atatcctaaa atagcaacct tcattttatt cttctttcaa gtatttttta atattgcgtg
     5401 cagcttgacg aatgcggttt tcattttcta ttaaagcaat tcttacatac tcatctccag
     5461 cttcaccaaa accaatacct ggactcacag ctacttctgc gtgctgcaaa agttgtttag
     5521 aaaattccaa gctttttaaa tacattttac tttcaggcag ttttgcccaa acaaacatac
     5581 tagctcttgg tttgtgaagt ttccaacccg cattttcaaa tgcttctagc aagatatgca
     5641 ttcttttatc ataagtagca cgaatttcat ctacacaact ttgatcccca tctaaagcta
     5701 tagtagcagc tacttgtata ggggtataca taccataatc aaaccatgat tttatctttt
     5761 taagagcagc tactaagcgt ttatttccaa ctgtaaatcc cacacgccaa cctgccatat
     5821 tgtaagattt tgaaagagtg taggtttcta cagcaacatc ttttgcgccc tctacttcta
     5881 aaatagaagg ggttttataa tcatcataag ttaaatccgc ataagcgata tcggaaataa
     5941 tataaaatcg ctcttttttt gcagttgcaa ccaatctttc ataaaaactt ttttcacaag
     6001 ttaccgttgt tggattgtgt ggaaaattaa ccactacata ttttggacgc ggaatacttt
     6061 catgcagggt tttatccaaa tcttcaaaga atttgttttc atcaagctca aatttttcat
     6121 tatatttaag aggcatttta gctacatttc ctcctgctat gataaaagct tgagtatgga
     6181 taggataagc tggagctggc actatagcca catctcctgg attgataatc gctcttgcta
     6241 aattgacaaa accctcttta gagcccatag tcgctactac ttcactttca ggatctaaat
     6301 ttactccgta ttttctttta taccaattgc aaatagctag gcgaagttta taaatcccca
     6361 tagaggtaga ataccccgaa gttttgtctt tattggcgct ttcacaaagt ttatcaatga
     6421 tatgttgagg ggttttacca tcgggatttc ccatagaaaa atcgatgata tcctttccag
     6481 cacgccttgc tgccattttg atcgcattta cttctgcaaa aacataattt ggaagccttt
     6541 ctatggtatt gaaacgaatt tcatcaaaca tttctcttcc tttttatttt tttagggtga
     6601 tttttaaacc tcttcggata ttgtctaaac tatacatatc acttacaatt gcataaactg
     6661 caccgcttgg aataagctct gaaaaatgat tattttgagc ttgactcttg actgctttaa
     6721 taagatttaa atttttatct aaaaataaca ctttaggaaa ccaaaaatca gcatcatgag
     6781 catcaatcat caaatttgaa gccccttgaa gagtaaatac ataatcttta agcggtcttt
     6841 ctaaagcttg tgtggaatta agttttaaat caatattagt attaagctga gcattttcaa
     6901 aatttaaatc atactcatag tcataagtac ctatgcgctt gatattgtct atataaactg
     6961 aattatcttt taaaagagcg tataaggcac ctggatctaa aatgtattga gattctactt
     7021 gtatggtata gtctatattg ccatcgcgta aaatcatatc cgtaggaata aaatatatat
     7081 atccaagatt tgtaagtgcg tcagttaaaa tcttaaaaaa tacaacagaa tctgctttag
     7141 ctttaaaatt aagctttaaa gttcgaggct ctggtagagt taggttgatt aaagaattgg
     7201 tttttaaaat tcttgaaatt ttagctatgt ctggattgcc tttattatcc atatagctgg
     7261 agctaggaaa caaaagacgc aattgagaat ctttagaagg attagcaact aaatttttcg
     7321 ctagctctaa actagaaaca gcaaaaacag aattagctaa aaataaaaaa ataaagattt
     7381 tttttaccat tctttacctt tatttaactt cataaattca gccgccgaaa tacttgtaat
     7441 ttttccatct ttaatcaaaa agcgctttga atttcctgca ggaaattttt gttcttttcc
     7501 attttcatca aaaacactta aagccgcagc tcctgttaaa accaaacgat ttacttctaa
     7561 agaaagatta aaatcatttt cttttacaag accagttttt ctataatttg ataaatcaat
     7621 caaacctatc caaattttac ccgaagcttt aaaatgagct tctttattga gagcttttga
     7681 gacttctgca acttcttgat ttgttgttgc taaagaatca tttgtgctta aattttcttc
     7741 attggcattt gtattatttg gtgtggtaga aatttgtttt atttcttctt ttgtattgtt
     7801 aagttctgta ttttgtattt gagttaaatt ggcttctgtt tcattttctt cagcttgatt
     7861 gtcaatcaca actacattat tttctaaagc ttttagatta gattgtgctt ttccgataat
     7921 atctacaacg gccgcacttg agttgttttg atccttttga aaaaaagatt taatataatc
     7981 aaaataataa atcccaaaac ctataagtgc tataattata actataatta taaaagatac
     8041 aaaactagtt gacttttggc tataagcatc taatttaggg gttatcatct taggcttggt
     8101 ggttgtatcg ttaagattat tttcattgag ataggtttca aattcttcat taaaatccgt
     8161 aaaatcaagt tcgtattcac gacttaaaat ttttacgaaa ccacggacat taaaacgatt
     8221 taaggtggca aaatcctttt taactaaagc ttctaaaaat tccaattcga tttttgttct
     8281 agcagcaact tcttttaaat ttaaatcttc aatttttttc caattaagca tttatcatcc
     8341 tatcacaaag tattgcaaaa gctacactga cattaaggct gtcgaaatta tttttcattt
     8401 ctatgcctac acattcatcg cattttttta ttattttagc acttaatccc aaaccttcac
     8461 ttcctaaaat caaagctttt ttacccttat cgactttata atgatgaatt tgtttacctc
     8521 cacttgcact agcaaaaagc ttaaatccta cttgtttaag ctcatttaaa acggtaaaaa
     8581 tatcattatt taaagcaatt tcaagatcta gcgccgctcc actgctcgtg cggataacgc
     8641 cttccatcgc gagtctttcg ccgataaaaa taagtccatc cactcctaaa gcataagctg
     8701 ttcttacgat agctcctata tttccaacat cactgatacc ataaagaata gctataaatt
     8761 cacccttttt aagagtgtgc aaatctttaa attcatactc tttaatatct agtaaaaaac
     8821 cttgatgatt tccaccttta gcataagctt gggctgtttt aaaatcaagt tttttgatct
     8881 taaagcctga actagcaatt tttttaaaag tttctttgtc gcactcttta gctaaataaa
     8941 gctcatttat aagctcttta tgtcgttcta aaatataaaa aaatatctgt tttccataaa
     9001 ctatcattct aaattttacc taactttgac ttaaaagcag tttttgataa atttcttttg
     9061 gattttttcc attcatcttt gccaaaagct tgctttttgt ttttaaaggt atttcaagtt
     9121 ctaaaatatc attttcacac aaggaatgac taatgttatc tttatcattt ttagccaaca
     9181 caacaaccca ctcacccttt aaatttacct gttttaattc attaaaaaga tctatagcct
     9241 tgcctttaaa tttggcttca aattttttag aaatttcttt aatcacaaaa acttctcttt
     9301 gactatctaa aatagctatt tgttctatta aagacaaaat gcgtttagga gattcgtaaa
     9361 taacactagg ataaggatga ttgagtattt tttggatatc tttttggcgt tctttgcctt
     9421 tattggctaa aaaacccata aaaataaatt ctttttcgca caaagccgag cttacaagtg
     9481 ccaccaaagc tgcattagca ccgggtaaaa cttcaaattg gatatcattt tctaaagcaa
     9541 aatcaattaa aaattgccca ggatcactaa tccctggcat acccgcatca ctcaaaaaag
     9601 caatgtcttg attaaaaaat tccaagtcta aattttctaa aacttttttt tcattgtggg
     9661 tgtgaaaaga tataaatttt ttatctccaa aatcgatttc aaatttagaa gaaagtaaag
     9721 aaagtaaaga cttgcttacc cttgtatctt cacaaaaaaa aatatcgcaa gtctttaaaa
     9781 gctctaaagc acgaaaagaa atatcgctta aatttcctat gggtgtagga ataaaataaa
     9841 gcataattat tgcattgcgt attttttctt aaatttctct acacgacctg ctgcatctac
     9901 gattttttcg ctacctgtga agaaaggatg gcagcttgaa caaatatcaa ctcttaactc
     9961 acttttgttt gatttagtaa caaaagtatt gccacaagcg cagctaactt tgcattctac
    10021 atattctgga tgaatttctt ttttcatagc tttttcctta aa
//
LOCUS       DBBXRO010000057         9876 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.058, whole genome shotgun sequence.
ACCESSION   DBBXRO010000057 DBBXRO010000000
VERSION     DBBXRO010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9876
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.058"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1190)
                     /gene="murD"
                     /locus_tag="ACJFEZ_001060"
     CDS             complement(<1..1190)
                     /gene="murD"
                     /locus_tag="ACJFEZ_001060"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HGG0917188.1"
                     /translation="MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDESGNH
                     LLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNGKT
                     TTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALL
                     PISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYAKTPTKAYIISYKDEFDLA
                     QKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGR
                     LWVNDTKATNENAVMAALNRYKNKKIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGL
                     STQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRG
                     EKFK"
     gene            complement(1190..2251)
                     /gene="mraY"
                     /locus_tag="ACJFEZ_001061"
     CDS             complement(1190..2251)
                     /gene="mraY"
                     /locus_tag="ACJFEZ_001061"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HGG0917189.1"
                     /translation="MYYLSYFSDYAFFTYISVRAGFAFFIALCLSLFIMPKFIAWAKN
                     KNANQPIYELAPQTHKVKSQTPTMGGLIFIGCAVFTSLLCAKLDNVFTITALLCLVLF
                     CLIGLVDDLGKILKKDNHSGLSPKMKLLAQISVGLICILPLYFSPEFNTEFYLPFYKY
                     PLFDMKIFALAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLVGFVFVLETISVILQVGSFKIFNKRVFKMAPIHHHFEKIGWVENKIIVR
                     FWMISLLSNLLALASIKLR"
     gene            2331..3809
                     /gene="gpmI"
                     /locus_tag="ACJFEZ_001062"
     CDS             2331..3809
                     /gene="gpmI"
                     /locus_tag="ACJFEZ_001062"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HGG0917190.1"
                     /translation="MRQKCILVITDGIGFNKEKDFNAFEAAKKPNYERLFREVPNSLI
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGQIIYQNLVRINKAIESCELEKNANLKKLLQK
                     CKRVHVIGLYSDGGVHSMDTHFNALLEICAKNGNEVFAHAITDGRDVSPTSGLEFIRK
                     LKNHCEEIGVHFATLCGRFYAMDRDKRWERVKEYYDCLLGKSKGVSNWVDYIEECYQN
                     ETTDEFIQAAKNENYKGMQEDDGLIFVNFRNDRMKQLIEVLNSQNFKEFEREKVFENL
                     LTMSVYDDKFNIPVLFEKEEIKNTLSETISKAGLTQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPEMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDVCLGEVVECARKHDYAFIITSDHGNCEAMQDKKGNLLTNHTTFDV
                     FVFVEAKGVDKLKENMGLSNIAASVLKILNLEIPKEMNEALF"
     gene            3874..4617
                     /gene="fabG"
                     /locus_tag="ACJFEZ_001063"
     CDS             3874..4617
                     /gene="fabG"
                     /locus_tag="ACJFEZ_001063"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HGG0917191.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLASFGLKVWINYRSKPELAD
                     ALKDEILAQGGNAAVIKFDASKEDEFENGIKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFTSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQTNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEILSDEIKQAYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            4627..5034
                     /locus_tag="ACJFEZ_001064"
     CDS             4627..5034
                     /locus_tag="ACJFEZ_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HGG0917192.1"
                     /translation="MDLKEIEQFLDENTPAFLATLGTCGNPRVRPMQSPLLVGDRIYF
                     CTSNNKGLFKHIQNYNGIEFCSCSREGVFLRLRANAVFEPNAKVKELMFEKYPYLVSL
                     YENPQNSRFEVFYLDNLSAKMQFPNGDFKLYKA"
     gene            complement(5054..5719)
                     /gene="tenA"
                     /locus_tag="ACJFEZ_001065"
     CDS             complement(5054..5719)
                     /gene="tenA"
                     /locus_tag="ACJFEZ_001065"
                     /EC_number="3.5.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050334 - thiaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006772 - thiamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HGG0917193.1"
                     /translation="MLFSRLIETNSHIWDEYLHHEFVKKLENGSLKEENFLFYLKQDY
                     IYLIHYAKCYARLALNAKNAEELRFAMKFQNYIIEGEIELHKSILKLGINADKLNVKD
                     ESLTNIAYTRYMLSVGESGDFLDMLVALSACAIGYGYIGAEIYKRLGKEKLQNHPYKE
                     WILTYSSDEFQSEIKEFEDFLNSYTQQISQEKFENLSEIFYNVVRLENAFWEHALQMK
                     MDI"
     gene            5833..6066
                     /gene="acpP"
                     /locus_tag="ACJFEZ_001066"
     CDS             5833..6066
                     /gene="acpP"
                     /locus_tag="ACJFEZ_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0917194.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIENLKK"
     gene            6100..7314
                     /locus_tag="ACJFEZ_001067"
     CDS             6100..7314
                     /locus_tag="ACJFEZ_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HGG0917195.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICEGKSGVKKITLFDTTDF
                     PVQIAAEIENFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDANFDQNLDKEEFGVVS
                     AAGIGGLPNIEKNSVICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNANKMLVIGAEAAICPVGIGGFASMKALSTRNDDPAHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGAKIYAELVGFGESADAHHITSPTLDGPL
                     RAMKKALKMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGSEIPAVSSTKGQTGHCL
                     GAAGAIEAVISIMALDNGIMPPTINQFVSDEECDLDYIPNEARKADLRVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            7316..8254
                     /gene="accA"
                     /locus_tag="ACJFEZ_001068"
     CDS             7316..8254
                     /gene="accA"
                     /locus_tag="ACJFEZ_001068"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HGG0917196.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVAILKKNLEKEIAKT
                     YKNLSDFGRLQLARHPDRPYALDYIDLILNDAYEIHGDRAFRDDPAIVCFMGYLGEKK
                     LIVIGEQKGRGTKEKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGL
                     GAEERGQSEAIATNLYELSDLKTPTIAVVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPSKSEAATKAMKVTADDLKSQGLIDDVIEEPINGAHRNKEAAAVAI
                     ADYVKKALDELEKIDPRELASNRMQKILQLGAFSES"
     gene            complement(8577..9254)
                     /locus_tag="ACJFEZ_001069"
     CDS             complement(8577..9254)
                     /locus_tag="ACJFEZ_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917197.1"
                     /translation="MKKLKYILGLGLLLLTGCENGEYNTNTNVLDIQNDIHKAFYNKT
                     YSDKAKFYEKMQKTINENISTGNAIIQASNIEPKFKIDPIQFKECVFYEIWTIKNPQN
                     TSYTLSAERCQTAFLNNKELIKYADPSFVMGNFIKDNQENILGIKAVKEELSKPSYVT
                     DVKSYKFISDKYKILENGNYIYILQNFKAKSEILGEYTQNAHIIFNNKGNVIKIELNQ
                     NKEFGSY"
     gene            complement(9256..>9876)
                     /locus_tag="ACJFEZ_001070"
     CDS             complement(9256..>9876)
                     /locus_tag="ACJFEZ_001070"
                     /inference="COORDINATES: protein motif:HMM:NF012920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HGG0917198.1"
                     /translation="EEKEQLLQEMIEFYSVKDKFELAEYLGLSRESAHNWPKRISKKQ
                     ILIYEKDKKIKISSKNTEKIISDDEDIVLVPFYKDNSVSAGFGSKNYEGLVQHIPFNK
                     QDLRLMFNIQGFLKIGIIPVIGDSMAPTIKEGEMIVFQDDGSMIEGGIYVIEYQSEVF
                     VKRLRKRPLSLISDNKDYPPIVMNEDEEIKIIGRVVGTYDLNYRRL"
BASE COUNT         3373 a         1400 c         1787 g         3316 t
ORIGIN      
        1 tctttaaatt tttctccacg ttgagcataa gagctgaatt gatctaagct tgcacaagca
       61 gggcttaata aagccacttc attgtttttt agcgttttgg aaatttcttg tacagcattt
      121 tctaaaaatt cacacttacg agcttttaaa tttgctttta aagcataatc aagcattttt
      181 tgagtgctaa gtcctatagc atagagttct atgttgaaat ttttcataaa attaaataaa
      241 gcgcttaaat ccacaccctt atcatcgccg cccacaataa gatgaatttt tttattttta
      301 tagcggttaa gagcggccat tacagcgttt tcattggtcg ctttagtatc attgacccaa
      361 agtctacctt gactatcttg caattcttcg agtttatttt tttccatgat aaattgattt
      421 aaaagttcat agcttagact atcaagtaga attttttcta tacttaaagc catgacagca
      481 tcaagcaaaa aagggctttt aaaagatatt ttttctatat cgatacccat tttttgagca
      541 agatcaaatt catctttgta agagataata taagcttttg taggtgtttt tgcgtaaatt
      601 tcaggcaaga ttgcaatatc acactcattc attctttcta aaacgctcaa tttatctttt
      661 gcataatttt caaagcttcc atgccatgaa agatgatccg cacttatagg tagaagtgca
      721 taaatttcgg gttttgcagt atgggtatag tgaagtgtaa aagatgaagt ttcaagtatc
      781 caaattttgg catttaaatc aagctcagcc agaggaaaac cgacatttgc tcccattact
      841 gctccaacat gtgaaagtag atgtgtagcc atttgtgtgg ttgtggtttt accatttgta
      901 ccactgatcc aaacagattt tggcatagca tcataaaaaa aatcatattc gctttgtaaa
      961 ttttttgctt tttttataag gttatggtta ggtggaaagc cagggcttgg aatttcaagc
     1021 tcgcttactt tttcatcaaa ttctttagga tttaaaagat gattacccga ttcatccttg
     1081 cttttttctt gaaaatgatc atcgtagata tcaaaagggc cgaattgatt ggctaaattt
     1141 ttagctattg cctgtgtggt tttaccatat ccaaaaagtg aaattctcat tatcttaact
     1201 ttatcgatgc aagcgcaagt aaattagata gcaaggatat catccaaaaa cgcactatga
     1261 ttttattttc tacccagcct attttttcaa aatgatggtg tataggcgcc attttaaata
     1321 ctcttttatt gaaaatttta aagcttccca cttgtaaaat gacagaaatg gtttcaagca
     1381 caaagacaaa gcctacaagt aaaagcaaga tttcattttt gcttatgatg gctaaaaaac
     1441 ctataaatcc acccaaggct aagcttccac tatctcccat aaaaacttgt gcaggatagc
     1501 agttatacca taaaaatccc ataagagctc caatcaatgc agcacagata atcactacct
     1561 cgcccaagcc ttgaatttta ggtaaaagca aatattcact ataatttaaa tttccactca
     1621 aatataaaaa tatacctaag gtagataaag aaaaaatgct aggaactgtt gcaagtccgt
     1681 caagtccatc ggttaaattg acagcattag agctggagat taagaccaaa atccaaaaag
     1741 caagagcaaa aattttcata tcaaaaagcg gatatttgta aaaaggaaga taaaattctg
     1801 tattaaattc agggctaaaa tataaaggta aaatacagat taatcctacg cttatttgtg
     1861 ctaaaagttt catttttggg ctaagtcctg agtggttgtc tttttttaaa attttaccca
     1921 aatcatccac aagtccaata aggcaaaaaa gcacaagaca aagcaaggcg gtgattgtaa
     1981 atacattatc caatttagca caaagaagac ttgtaaagac tgcacaacct ataaagataa
     2041 gcccacccat tgtaggcgtt tgagatttta ccttgtgagt ttggggtgct agttcataaa
     2101 tgggttgatt tgcatttttg tttttagccc aagcaataaa tttaggcatg ataaataaag
     2161 acaagcataa agcaatgaaa aatgcaaagc ccgcgcgtac actgatataa gtaaaaaaag
     2221 cataatcact aaaataagaa agataataca aaagctagcc ttctttttgg tttttaaaag
     2281 cttaatttta gtaaaatcta gccaaaaaat ttcttataaa agagtaaaaa atgagacaaa
     2341 aatgtatttt agttattaca gatggaatag gttttaacaa agaaaaagat tttaatgctt
     2401 ttgaggctgc taaaaagcca aattatgaga ggctttttag agaagtacca aattctttaa
     2461 ttaaaactag tggtttagcg gtaggtttgc ctgaagggca aatgggaaat agcgaagtgg
     2521 gccatatgtg tataggtagt gggcaaatta tctatcaaaa tttagtgcgt attaataaag
     2581 ctatagagag ttgcgaactt gaaaaaaacg caaatttaaa aaaacttcta caaaaatgca
     2641 aaagagtgca tgttattggt ttatatagcg atggtggggt tcattctatg gatacacatt
     2701 ttaatgcctt gcttgaaatt tgtgccaaaa atggaaatga agtttttgca catgcaatta
     2761 ctgatggacg cgatgtaagt cctacaagtg gattagaatt tataagaaag ctaaaaaatc
     2821 attgtgagga aataggcgtg cattttgcta cgctttgtgg ccgtttttat gctatggata
     2881 gagataagcg ttgggaaaga gttaaggaat attatgattg tttattaggc aagagcaagg
     2941 gtgtgtcaaa ttgggttgat tatatagaag aatgttatca aaatgaaaca actgatgaat
     3001 ttattcaagc ggctaaaaac gagaattata aaggcatgca agaagatgat ggattgattt
     3061 ttgttaattt tagaaatgat agaatgaaac aactcatcga agttttaaat tctcaaaatt
     3121 tcaaggaatt tgagcgagaa aaagtgtttg aaaatttgct tactatgagt gtttatgatg
     3181 ataaatttaa tattccagta ctttttgaaa aagaagaaat taaaaataca ctttctgaaa
     3241 ccatctccaa agcaggactt actcaacttc atactgcaga aactgaaaaa tatgctcatg
     3301 ttactttctt tttcaatgga ggaaaagaag aacttttgga aaatgaaaca agggttttaa
     3361 tcccaagtcc aaaggtaaaa acttacgacg aaaagcctga aatgagcgct tttgaagtat
     3421 gcgatgcggt taaaaaaggg atagaaaagg gcgaagattt tatagtggtg aactttgcaa
     3481 atggtgatat ggtaggccat acaggagatt ttaatgctgc cattaaggct gtagaagcag
     3541 tagatgtttg tttgggcgaa gtggtcgagt gtgcaagaaa gcatgattat gcctttatca
     3601 ttacaagtga tcatggaaat tgtgaagcga tgcaagataa aaaaggaaat ttattgacca
     3661 atcatacaac ttttgatgtt tttgtttttg tagaagctaa gggagtagat aagcttaagg
     3721 aaaatatggg acttagtaat atcgctgcaa gtgtgcttaa aatattaaat ttagaaattc
     3781 caaaagagat gaatgaggct ttattttgat ctgtttgcct tttgatatag atttttgtta
     3841 aaatttaatt ttatattttt tttaaggata gaaatgaaat ttagtggaaa aaatgtttta
     3901 attacaggtg caagtaaggg tattggtgct tctattgcaa aaactttggc aagttttgga
     3961 ttaaaagttt ggattaatta tcgctcaaaa ccagaacttg cagatgcttt aaaagatgaa
     4021 attcttgcgc aaggcggcaa tgcagctgtg attaaatttg atgcaagcaa agaagatgag
     4081 tttgaaaatg ggataaaaac tatagtagaa agcgatggag agcttagcta tcttgtaaat
     4141 aatgcaggtg ttacaaacga caaacttgcc ttaagaatga aactcgaaga ttttacaagt
     4201 gtagtggata caaatttgag ttctgcattt ttaggttgta gagaggcttt aaaaacaatg
     4261 agcaaaaagc gttttggtgc ggttgtgaat attgcttcaa ttgtcggtga aatggggaat
     4321 gccggtcaga ctaattattc tgcgagcaag ggtggaatga ttgctatgac taaatctttt
     4381 gctaaagagg gagcaagtag aaatttgcgt tttaattgtg ttactccagg ctttattaaa
     4441 agtgatatga cagagatttt aagcgatgaa atcaaacaag catatcaaga taatatccct
     4501 ttaaaacgct ttgcagaacc tgaagaagtt gcaaattgtg tagcattttt attaagtgat
     4561 tatgcttctt atgtgacagg tgatgtgctt aaaattaatg gcggattata tatgtaagga
     4621 aagtatatgg acttaaaaga aattgaacaa tttttagatg aaaatactcc tgcgtttttg
     4681 gcaactttag gaacttgtgg aaatcctagg gttcgtccta tgcagagccc tttacttgta
     4741 ggagatagaa tttatttttg tacttctaat aataaaggac tttttaagca tatacaaaat
     4801 tataatggta ttgaattttg ttcttgttct agagagggcg tttttttaag acttagagca
     4861 aatgcagttt ttgaacctaa cgcaaaagtt aaagagctga tgtttgaaaa atatccttat
     4921 cttgtaagcc tttatgagaa tccacaaaat tctagatttg aagtttttta tcttgataat
     4981 ttaagtgcta aaatgcagtt tccaaacgga gattttaaac tttataaagc ttaaagcaag
     5041 gattttcctt gctttaaata tccattttca tttgtaaagc atgttcccaa aaagcatttt
     5101 ctaaacgcac tacattataa aaaatttcgc taagattttc aaatttttct tgagatattt
     5161 gttgagtata agaatttaaa aagtcttcaa attctttaat ttcactttga aattcatctg
     5221 aactataggt taaaatccat tctttataag ggtgattttg aagtttttcc ttgccaagtc
     5281 ttttataaat ttcagctcct atataaccat aacctatggc acaagcactt aaagccacta
     5341 acatatctaa aaaatctcca ctttcaccca cgcttaacat atagcgtgtg taagctatat
     5401 tggtcaaact ttcatcttta acatttaatt tatcagcatt gatgccaagt tttaaaatac
     5461 ttttatgaag ttcaatttct ccttctataa tgtagttttg aaatttcatt gcaaagcgta
     5521 gttcttcggc attttttgca tttaaggcaa gtcgtgcata gcatttagca taatggatga
     5581 gatagatata atcttgtttg agataaaaaa gaaaattttc ttcttttaaa cttccatttt
     5641 ctaatttttt tacaaattca tgatgtaaat attcatccca aatgtgtgaa tttgtttcaa
     5701 taagtcgaga aaaaagcatt tcttactcct aaaattcaat ggttttttaa agtatagtca
     5761 aaaactataa atattttaag ttttttattg taaaatacgc tttattttaa tttttatcaa
     5821 ggagatatat aaatggcaac atttgatgat gtaaaagcag tggtagtaga gcaattaagc
     5881 attgatgcgg atgctgttaa gatggaatca aaaatcattg aagatttagg tgcagattct
     5941 ttggatgttg tagagcttat tatggcatta gaagaaaaat tcgaagtaga aatcccagat
     6001 agtgatgctg aaaaactaat taaaattgag gatgttgtaa attatatcga aaatcttaaa
     6061 aaataattta aaaaaattca ctttacaagg agcttgttct tgaaaagagt tgtagtaaca
     6121 ggtattggta tgatcaatgc cttgggttta gataaagaaa gttcttttaa ggcgatttgt
     6181 gaaggtaaga gtggtgtgaa aaaaatcact ctttttgata ctacagactt tccggttcaa
     6241 attgcagcag aaattgaaaa tttcgatcct ctagaagtag ttgacggtaa agaggttaaa
     6301 aaaattgatc gttttattca attgggcatt aaagctgctc gcgaagcaat gcaagatgct
     6361 aattttgatc aaaatttaga caaagaagaa tttggagttg tttcagctgc gggaattgga
     6421 ggtctgccaa atatagaaaa gaattcggtt atttgttctg aacgtggccc tcgtaaaatt
     6481 tctccatttt ttataccttc agctttagta aatatgttag gcggtttaat ttctatagaa
     6541 cacggactta aaggacctaa tatttcttgt gtaacggctt gtgcagcagg aactcatgct
     6601 ataggggaag catataaaag tatagcttta ggtaatgcta acaaaatgtt ggtaattggt
     6661 gcagaagctg ctatttgtcc tgtaggaatt ggcggttttg cttcaatgaa agctctttct
     6721 actagaaatg atgatcctgc tcatgcttca agaccttttg ataaagaaag agatggtttt
     6781 gtaatgggag agggtgcagg cgctttggtt tttgaagagt atgaagaggc taaaaagcgt
     6841 ggggctaaga tttatgctga attggttggt tttggagaaa gtgctgatgc gcatcacatt
     6901 acctcaccta cattagatgg acctttaaga gcgatgaaaa aagccttaaa aatggcagga
     6961 aatccaaagg tagattatat taatgcacat ggaacttcaa cgcccgtaaa tgacaaaaat
     7021 gaaacagctg caattaaaga gctttttgga agtgaaattc cagcggttag ctcaacaaaa
     7081 ggacaaacag ggcattgttt gggtgctgca ggagctattg aagcggttat tagcatcatg
     7141 gcattagaca atggaattat gccacctact attaatcaat ttgttagcga tgaagaatgt
     7201 gatttagatt atataccaaa tgaggccaga aaagcggatt taagagttgt gatgagtaat
     7261 tcttttggct ttggcggcac aaatggttgc gtggtattta aaaaagtaga ttgatatggc
     7321 ttcgtattta gattttgaaa aaaatattca gcaaattgat gaagatatta tcaatgctca
     7381 aattaagggt gataccgagg ctgttgctat acttaaaaaa aatctcgaaa aagaaattgc
     7441 taaaacttat aaaaatttaa gcgattttgg acgcttgcaa ctcgctcgtc atccagatcg
     7501 cccttatgca cttgattata tagatcttat tttaaatgat gcttatgaaa ttcacggaga
     7561 tcgtgctttt agagatgatc ctgctattgt ttgttttatg gggtatttag gagaaaaaaa
     7621 acttatagtt ataggagaac aaaaaggacg tggcacaaaa gaaaagatcg ctagaaattt
     7681 tggtatgcct catcctgaag gttatagaaa agctttaaga gtggcaagac ttgcagagaa
     7741 atttcaaatt cctattttgt ttttgataga taccccgggt gcttatccag gtttgggagc
     7801 agaagaacgt ggtcaaagtg aagctattgc tacaaatttg tatgaactta gcgatttaaa
     7861 aactcctact atagctgtgg ttataggaga aggaggaagt ggtggagctt tggctatagg
     7921 tgtggctgat aagcttgcaa tgatgaaaaa ttcagttttt tctgtcattt ctcctgaggg
     7981 ttgtgcagct atactttgga atgatccttc taaaagtgaa gcagcaacaa aagctatgaa
     8041 agttactgca gacgatttaa aaagtcaagg cttaattgat gatgtgattg aagagcctat
     8101 caacggagcc catcgcaata aagaagctgc tgctgttgct atagctgatt atgttaaaaa
     8161 agccttggat gaattagaaa aaatagatcc gcgagaactt gcttcaaatc gcatgcaaaa
     8221 aattcttcaa cttggagctt ttagcgaaag ctaaaaactc tacttaataa aaatattctt
     8281 taaaatttca aattattcta aaaaattaaa attttgacaa taaagcaaaa cctacaaaaa
     8341 gaaaagttca ataaatataa gagataaata atgaatactt tatatccttt atatcacaaa
     8401 taaaacaata tagaagatgc aaagaagcat ttatactttt taatggataa aaaataattt
     8461 gacaaatggg taatattgtc ggcggaaaaa taaaatgtcg caaaagaaaa ataaaatgtc
     8521 gtatttttgc gacaaattat ctttctttca accttaaact taaattgtaa ttttaatcaa
     8581 tatgagccaa attctttatt ttggtttaat tcaattttta tcacattgcc tttattatta
     8641 aaaataatgt gggcattttg agtgtattct cccaaaattt cactttttgc tttgaagttt
     8701 tgtaaaatat aaatatagtt tccattctct aaaattttgt atttatcgct aataaattta
     8761 tagcttttga catctgttac ataggatggt ttagataatt cttctttaac tgctttaatg
     8821 cccaatatat tttcttgatt gtctttgata aaattaccca ttacaaagct tggatccgca
     8881 tatttaatta actctttatt gttgagaaag gcggtttggc atctttctgc actaagcgta
     8941 taagaagtat tttgaggatt ttttatagtc catatttcat aaaacacgca ttctttaaat
     9001 tgtataggat caattttaaa ttttggttct atgtttgaag cttgtataat agcgtttccc
     9061 gtacttatat tttcgttaat ggttttttgc attttttcat aaaactttgc tttatctgaa
     9121 taagttttat tataaaaagc tttatggata tcattttgaa tatctagcac attagtgttt
     9181 gtgttatact caccgttttc gcaacctgtt agtagtaaaa gtcctaatcc taaaatatat
     9241 tttaattttt tcatttcaca acctcctata gtttaaatca taagtaccta ccactctacc
     9301 tataatttta atttcttcgt cttcattcat aacgataggc ggatagtctt tattatcgct
     9361 aattaatgat aaaggtcgct ttctcagtct ctttacaaag acttcacttt gatattctat
     9421 cacataaatc cccccctcaa tcatagaacc atcatcttga aaaactatca tctcaccctc
     9481 ttttatagtg ggtgccatac tatcccctat cactgggata atgcctattt ttaaaaatcc
     9541 ttgaatgtta aacataagtc ttaaatcttg tttgttaaat ggaatatgct gaactaagcc
     9601 ttcgtaattt ttagaaccaa atccagcaga aacagaattg tctttgtaaa atggaactaa
     9661 aacaatatct tcatcatccg atatgatttt ttcagtattt ttacttgaaa ttttaatttt
     9721 tttgtctttt tcgtaaatta aaatttgttt tttgctaatt cttttaggcc agttgtgtgc
     9781 agattctctt gaaagaccta aatattcagc caattcaaat ttatctttaa cgctataaaa
     9841 ctctatcatt tcttggagta attgttcttt ttcttc
//
LOCUS       DBBXRO010000058         9817 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.059, whole genome shotgun sequence.
ACCESSION   DBBXRO010000058 DBBXRO010000000
VERSION     DBBXRO010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9817
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.059"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            22..630
                     /locus_tag="ACJFEZ_001071"
     CDS             22..630
                     /locus_tag="ACJFEZ_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0917199.1"
                     /translation="MENSIKDSYNKICKKWSEFRKNTSINQCIVDFANNLSPNSRVLD
                     IGCGTGYPIALYLSKQGFQVTGIDISEEMIKQAQKLNLHNATFLVEDILNFKTDKKYD
                     AIIAFDSIWHIRYDKQECIYQIISSLLTSGGLFLFTHGKNDGEIISTMWKESFYHSAL
                     GLEKVHKLLKQNGFDILSSIEDYIEETTGDRELLIIAKKKEL"
     gene            complement(753..1310)
                     /locus_tag="ACJFEZ_001072"
     CDS             complement(753..1310)
                     /locus_tag="ACJFEZ_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HGG0917200.1"
                     /translation="MFFYEYLKNPKQIGAFCSSSQKLGFVMTQNINLRQANYIVEIGP
                     GTGVFTENILKYKNKKAQFFAIEINKNMADKLKRKIVNLDIEIGSAENLPYFLRQRNI
                     TYADVIISGIPWSLLRDHEQEKLLKIIHKSLKPNGYFSTFAYVLPTYSSLKFRQKIFS
                     LFAEVRISKVVWQNLPPAVVYYCKK"
     gene            1446..2906
                     /locus_tag="ACJFEZ_001073"
     CDS             1446..2906
                     /locus_tag="ACJFEZ_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917201.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFSRQIWNDKKSMPSVGML
                     VEFRTLSSDKKSENGAPVPVSKTITGIKPSKFQEFKEGDFITEHDFWKTDSDDELEDL
                     QNSRRSAYITELYRSIDFDSIEKIPLSFTIPQAIQKYFAHEILSVEALQANLQDEKDI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMIADKKPNIT
                     KIFNETFLSLQCHYQALIATIDTRKNRLASLEAQMKALQSEIQLKSNAANADPEKLKA
                     RQEKLAKLQKEAEYYRTTLKRLGAIQEDFYKKNYNIFENAFKLSREKLFKKIITGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIETFAQNPYFIVKYAPKKVNYQSLMRDNS
                     FDIVFIDEKHVWESVADIILEGKHFDKIGKTKFKLI"
     gene            3147..4397
                     /gene="purD"
                     /locus_tag="ACJFEZ_001074"
     CDS             3147..4397
                     /gene="purD"
                     /locus_tag="ACJFEZ_001074"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HGG0917202.1"
                     /translation="MKIMILGSGAREYSIALALKRVDENLEFYFAPGNGATESLGTNL
                     NFKDPVVLATYAKEKEFDLCIVGSESFLAEGVVDIFKQHNIPIFGPTKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFILSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEEASKMLSGESFGEAGKLIVVEEFLDGFELSIFAVCDGNDFVLLPAAQDHKKLLDGD
                     KGPNTGGMGAYAPSSLANESLLRKIQKDIIIPTLAGMKKEGSEFCGVLFIGIMVVGNK
                     PYVLEFNVRFGDPECEVLMPLIENPLELILATTQKRLRHTKIKIKKDYAVGVVCASEN
                     YPYKSSPKSEISITNIPENTHISYAGVSLEDGKLMADGGRVLVCVGTGSSIEEAQKKA
                     YELCENVHFKGKQFRKDIAHQVIQ"
     gene            4394..4846
                     /locus_tag="ACJFEZ_001075"
     CDS             4394..4846
                     /locus_tag="ACJFEZ_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HGG0917203.1"
                     /translation="MKEDLLTRLERENLTIASFNKRILAYFIDNLVLSLIVFVIFYDK
                     LLNAKDLFDTAQILGDFYLGFLLLHITYQTIFTYLYGASLGKMVCKIIILDEDLLDKP
                     NLNQSCIRSIVRQISDMAFMLGFAWALSNDLRKTWEDYLARTIVVNVA"
     gene            4836..6884
                     /locus_tag="ACJFEZ_001076"
     CDS             4836..6884
                     /locus_tag="ACJFEZ_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HGG0917204.1"
                     /translation="MWRKILFLSASLTLLNATQVDIYALDAKKQGDILTANDDVIIFS
                     DFYFITANKAIYNEKTGDLELFGDVNILRGQNERSHSNYAKINLNSNEANFNNFFFSN
                     NNLEVWFQSKTSYLDENVFKSEISAVSSCNVEDPDWEIRFSKGWLNRENNFVHLYNAK
                     LYVKDFPIFYLPYFGFSADTHRQSGLLIPKIVLKNSEGLYYEQPIYIAPYENWDLELN
                     PQIRTDRGFGLYSTLRFIDSPYSIGEVNLGAFRENSSYYHDENLKNQSHYGAELKYAR
                     NDLIKTLLGDNFQEGLWIDATYLNDIDYLNLGSRDYRDLNSLVTSKINYFLADENNYY
                     GAYAKYYIDTSALNNDNTLQEYPSFQYHRFLNNFFDERLRYSFDASFHNFYRPVGPYA
                     NQLNLNLPISYHNAFFDDFLHFTFTERFYASFLNYSHYPQKDHEHYFRNTHDFNLYTD
                     LSKAYDNFFHTLNFGLKYVLPGAKSGSISEDYLEEIDKEEEHLGFYTTQYFYNNEGQK
                     KIKHRINIDYLNKQGEFDEISNLLSYYYNNNISFNSEIIYSDLQDRFTNIISQMEINP
                     NPKFNWSFSHAYQNDEYGKYSFIGTRANYLANANYHLFGGIWFDTQRAHANMWELGYT
                     FQRKCWNYSLMYRERIDPQLTSAGITAKNQSGIYFIFNFYPLGGVKYDFSLAETESKI
                     "
     gene            6958..9117
                     /locus_tag="ACJFEZ_001077"
     CDS             6958..9117
                     /locus_tag="ACJFEZ_001077"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HGG0917205.1"
                     /translation="MQYSIEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREE
                     KPVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPQVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNP
                     NNEELKNSTLDLYVAGVKDELLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNEL
                     SEDEILEALSLAQKAILNGSNAYEEAFLKHKKSSDLNFKDEIENFELLAFIENNFHDQ
                     IVQAINQMAKSERASELNKIAEKILNFESATKWDEESILNALAKVKHKIVRSQILNTK
                     KRADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEK
                     NPINERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSIDENYPYIIRLVS
                     EILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIMGLEDH
                     DGDMDFKVAGSKDGITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIMEEALKEIV
                     VNEEVLPKLELFNVDPSKIVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGNENE
                     QIKAAKDYIINITSSQKNNKKGFKEKDLSNFEIGEEFEGKVKKITNFGAFIELKNGID
                     GLLHNSKSKNLNLSENQILKVKVSEIKNGKISVDLCE"
     gene            9114..9596
                     /locus_tag="ACJFEZ_001078"
     CDS             9114..9596
                     /locus_tag="ACJFEZ_001078"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033958 - DNA-deoxyinosine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HGG0917206.1"
                     /translation="MSEFLTHPFKPFFDKDSKILILGSFPSVKSREDGFYYQHPRNRF
                     WPILETLFDTRLENITKQQAFLKEKNIAIWDVLQSCKIKNSDDKTISYAKANDLNLIL
                     SQAQIQAIFTTGKSAYRFFTKFHPHLKAIALPSSSPANLNFSFEQLLQSYKIIKNFIK
                     "
BASE COUNT         3578 a         1419 c         1640 g         3180 t
ORIGIN      
        1 ttaaaatttt taggaatatg gatggaaaat agtataaaag attcatacaa taaaatttgt
       61 aaaaagtgga gtgaatttcg caaaaatacc tcaatcaatc aatgcattgt cgacttcgca
      121 aataatttaa gtccaaattc aagagtgcta gatattggtt gtggaactgg atatcctatc
      181 gctttatatt tatcaaaaca aggatttcaa gttacaggga tagatatttc agaagaaatg
      241 ataaaacaag cacaaaaact taacttacat aatgccactt ttttagtaga ggatatttta
      301 aatttcaaaa cagataaaaa atatgatgca atcatcgcat ttgattctat ttggcacatt
      361 aggtatgata aacaagaatg tatttatcaa atcatttctt ctttgttgac atctggtgga
      421 ttgtttttat ttactcatgg aaaaaatgat ggcgaaatta taagcacaat gtggaaagaa
      481 tcattttatc atagtgcttt aggtttagaa aaagtacata aattattaaa gcaaaacgga
      541 tttgatatct tatcttccat agaagattat atagaagaaa ctacaggtga tcgagaattg
      601 ctcattattg ctaaaaagaa agaattataa tatagcttta tttaaaatta tcaagcttta
      661 atccaaaaat tttacaatgc gtgcttattt ttaggacaat ccgtgtaata aagcattaag
      721 ttgtgtttta tcaaaaaaat ggggataaaa atttacttct tacaataata caccacagcg
      781 ggtggcaaat tttgccaaac aacttttgaa attctcacct ctgcaaaaag agaaaatatc
      841 ttttgacgaa attttaaact tgaataagta ggtagcacat aagcaaaggt gctaaaatat
      901 ccgttaggtt ttaaactttt atggatgatt tttaaaagct tttcttgctc gtgatcccta
      961 agcaaactcc acggaattcc acttataatc acatctgcat aggtgatatt tctttgcctt
     1021 aaaaaataag gtaaattttc agcactccct atttctatat ccaaatttac aatttttctt
     1081 ttaagcttat ctgccatatt tttattgatt tctatagcaa aaaattgtgc ttttttattt
     1141 ttatatttta aaatattttc agtaaaaaca cctgtgccag gtccaatctc tacgatatag
     1201 tttgcttgac gcaaattaat attttgagtc ataacaaaac ctagcttttg agagctagaa
     1261 caaaaagcac cgatttgttt tggattttta agatattcat aaaaaaacat tcaatttttc
     1321 ctacggtaaa aaaaatataa ctaaaaagaa ttttaaaatc aaacatgtaa ttttattctt
     1381 ttgcttataa aatttttata aaaataaagc taaaattatc ttttaaaaac tttcaaggat
     1441 gaaatatgca tggaaaaata gctatatata tggattccac agggcgtgga actgtaacga
     1501 attcagcaaa tacttttttt gactttagtc gtcaaatttg gaatgataaa aaaagtatgc
     1561 caagtgttgg gatgcttgtt gaatttcgca cgctctctag tgataaaaag tctgaaaacg
     1621 gcgctcctgt gcctgtaagc aaaactatca cagggataaa accttccaaa tttcaagaat
     1681 ttaaagaggg tgattttatc actgaacatg atttttggaa aaccgatagt gatgatgagc
     1741 ttgaagattt acaaaattct cgcagaagtg cgtatattac agaactttat agaagcattg
     1801 attttgattc tatagaaaaa attcccttat cttttactat tcctcaagcc atacaaaaat
     1861 attttgccca tgaaatttta tctgttgaag ccttgcaagc caatttacaa gatgaaaaag
     1921 atattccttg tattttggac tatctcattc ttaagagatt tttatttaaa gcttatgata
     1981 ctttaatttt tatggataat agtatagatc aaacccaatt tagcgcccta aaaagcatta
     2041 tgatgcactt agaaaattct tacaaacaaa tgatagcaga taaaaaaccc aatatcacta
     2101 aaatatttaa tgaaactttc ttatctttac aatgccatta ccaagcttta atagccacta
     2161 tagatacaag aaaaaaccgc cttgcttcac ttgaagcaca aatgaaagct ttacaatctg
     2221 aaattcaact taaaagcaat gcggccaatg cagatcctga aaaactcaaa gcaagacaag
     2281 aaaaattagc aaaacttcaa aaagaagcgg agtattatag aacaaccctt aaaagactgg
     2341 gtgctataca agaggatttt tataagaaaa attataatat ttttgaaaat gctttcaagc
     2401 tttcacgcga aaaactcttt aaaaaaataa ttacaggtct taatttatgt gctacgataa
     2461 tggatgttaa aatttggcac ctgtccttaa aatcatcagg ggttaaaaat tcttatttta
     2521 ctatgagtaa tatagaaaat tctttctgtt ctctttcttt tgcagaacat tacttaagtc
     2581 gcttaaataa atccgctcta aatccttttg atcaaaaact tttagtttat atccaaaaaa
     2641 ttaccaaaga acaaagaaaa aaatttttag tcgtgacttc ggatttggat ttgctttgta
     2701 aattaaaaat agaaaccttt gcgcaaaatc cttatttcat agtaaagtac gcccctaaaa
     2761 aagtcaatta tcagtcttta atgcgtgata atagttttga tatagtgttt atcgatgaaa
     2821 aacatgtatg ggaaagtgta gcagatatta ttttagaagg aaaacatttt gataaaatag
     2881 gaaaaaccaa atttaaactg atttaaacat agaattttaa gctaaataag gctataattt
     2941 gcttgcctaa acagttcgtg atatttaaag tgatccaaca tatttttatt aactgtgatt
     3001 gtgcgattta ccgtgttctg tggcgtcgtt tgagtttcga aagaagcgag aagttacagc
     3061 ctttaaaaat cgcctaacgg ttttctttga ctttttgggg tcaatcttta ttaagcggct
     3121 gtttgggttt tatacaagga gaataaatga aaataatgat tttgggtagc ggtgctcgtg
     3181 aatattctat cgctttagcg ctaaagcgtg tggatgaaaa tttagaattt tactttgctc
     3241 ctggtaatgg tgctaccgaa agtcttggaa ccaatctcaa ttttaaagat cctgtagttt
     3301 tagccactta tgcaaaagaa aaagaatttg atctatgcat agtaggtagt gaaagttttt
     3361 tagctgaagg cgttgtagat atttttaaac aacacaatat tcctattttt ggacctacaa
     3421 aagctgcagc tatgcttgaa acttctaaat cttttatgaa aagcttttta aaaaaatatc
     3481 gtattaaaac agcaaaattt ttaaacacaa atgatataga aaaagcaaaa aactttatat
     3541 taagcttaac tcctcctata gtcgttaaag ccgatgggct ttgtgctggc aaaggagtaa
     3601 ttatcgcaaa aactcacgaa gaagccatag aagaggcttc taaaatgcta agtggagaaa
     3661 gctttggaga agcgggtaaa cttatcgttg tggaagaatt tttagatggc tttgagctta
     3721 gtatttttgc ggtatgtgat ggcaatgact ttgtactttt acctgctgca caagatcata
     3781 aaaaactttt agatggggat aaaggaccaa atacgggtgg tatgggagct tatgctccga
     3841 gttctttagc taatgaaagc ttgcttagaa aaatacaaaa agatatcatt atcccaactc
     3901 ttgcaggtat gaaaaaagaa ggcagtgaat tttgcggggt attgtttata ggtattatgg
     3961 ttgtaggcaa taagccttat gtcttggaat ttaatgtgcg ctttggtgat cctgaatgtg
     4021 aagttttaat gcctttgatt gaaaatcctt tagaacttat tttagccact acacaaaagc
     4081 gtttaagaca caccaagata aaaattaaaa aagattatgc agtgggcgta gtatgcgcga
     4141 gtgaaaacta tccttacaaa agctctccaa aaagtgaaat ttctataaca aatattcctg
     4201 aaaatacaca tatttcttat gctggagtaa gtttagaaga tggtaaactt atggcagatg
     4261 gtgggcgtgt attggtttgc gttggtacag gctcaagcat agaagaggca cagaaaaaag
     4321 cttacgagct ttgtgaaaat gttcatttta aaggcaagca atttagaaaa gatatcgctc
     4381 atcaggttat tcaatgaaag aagatttact tacgcgtctt gagcgagaaa atcttaccat
     4441 tgctagtttc aataaaagga tattggcata ttttatcgat aatcttgtac tttcgctgat
     4501 tgtatttgtt attttttatg ataaattact taatgctaag gatttatttg atacagctca
     4561 aattttgggc gatttttact taggattttt attgcttcat attacttacc aaacaatttt
     4621 tacttattta tatggggcaa gtttaggaaa aatggtatgc aaaatcatta ttttagatga
     4681 agacttatta gacaaaccca atttaaacca aagctgtata cgctcaatcg ttaggcaaat
     4741 aagcgatatg gcatttatgt tgggctttgc ttgggcttta agcaatgatt tacgcaaaac
     4801 ttgggaagat tatctagcaa ggacaatagt agttaatgtg gcgtaaaatt ttatttttaa
     4861 gcgctagtct tactttactc aatgccactc aagttgatat ctatgcactt gatgctaaaa
     4921 aacaagggga tatactcact gcaaacgatg atgtgattat tttttcagat ttttatttta
     4981 tcactgccaa taaggctatt tacaatgaaa aaaccggaga tttagagctt tttggtgatg
     5041 tgaatatatt aagaggacaa aatgaacgct ctcattcaaa ctatgctaaa atcaatttaa
     5101 attcaaatga agctaatttt aataattttt tcttttctaa taataattta gaagtatggt
     5161 ttcaaagcaa gactagctat ttagatgaga atgttttcaa aagcgaaatt tcagctgttt
     5221 caagttgtaa tgtcgaagat cctgattggg aaattcgctt ttctaaagga tggctcaata
     5281 gggaaaataa ttttgttcat ttatataatg caaaattata tgttaaagat tttcctatat
     5341 tttatttacc ctattttggt tttagtgcag atacccaccg ccaaagcgga cttttaatcc
     5401 caaaaatagt cttaaaaaac agcgaaggtt tgtattatga acagcctatt tatatcgcac
     5461 cttatgaaaa ttgggatcta gaattaaatc ctcaaattag aaccgatcgt ggttttgggc
     5521 tttactcaac cttaagattt atcgactctc cttattctat aggagaggta aatttaggag
     5581 cttttagaga aaattcatcc tattatcatg atgaaaattt aaaaaaccaa agtcattacg
     5641 gcgcagaatt aaaatatgct agaaatgatt taattaaaac cctgttgggc gataattttc
     5701 aagaaggctt atggatagat gctacctatc ttaatgatat agattatctt aatcttggca
     5761 gcagggatta tcgtgattta aattcattag ttacttcaaa aatcaattat tttctagcgg
     5821 atgaaaataa ttattatgga gcttatgcaa agtattatat cgatacttct gcattaaata
     5881 acgataatac cttacaagaa tatccaagct ttcaatatca tcgttttttg aataattttt
     5941 ttgatgaacg cttgcgttat tcttttgatg catcttttca taatttttat cgccctgtag
     6001 gcccttatgc aaatcaattg aatttaaatt tgcctatttc ttatcataat gctttttttg
     6061 atgacttctt gcattttact tttaccgaac gcttttatgc ttcattttta aactatagtc
     6121 attatcctca aaaagatcat gagcattatt ttagaaatac gcacgatttt aatctttata
     6181 ctgatttatc taaagcatat gataattttt ttcatactct taattttggg ttaaaatatg
     6241 ttcttccagg agccaaatca ggaagtattt cagaagatta tcttgaagaa attgacaaag
     6301 aagaggaaca tcttggcttt tatactactc aatactttta caataatgaa ggtcaaaaaa
     6361 aaatcaaaca tagaattaat attgattatt taaacaagca aggtgagttt gatgagataa
     6421 gcaatttatt aagctattat tataataaca atatcagttt taatagtgag attatttact
     6481 ctgatcttca agatcgtttt acaaatatca tcagtcaaat ggagatcaat cctaacccta
     6541 aattcaattg gagtttttcg catgcttatc aaaacgatga gtatggaaaa tatagtttta
     6601 taggcacgcg cgcaaattac cttgcaaatg caaattatca tttgtttgga ggaatttggt
     6661 ttgataccca aagagcgcat gctaatatgt gggagcttgg atatactttt caacgcaaat
     6721 gttggaatta ttctttaatg tatagagaaa gaattgatcc gcaacttaca agtgcgggaa
     6781 ttactgctaa aaatcaaagc ggtatttatt ttatttttaa cttctatcct ttaggtggag
     6841 ttaaatacga tttttcttta gcagaaacgg agagtaaaat ttaaaattaa ggaatgagat
     6901 ttgctaaata tttttaaaag tttgacaaat ttattatatg gaaaaaaagg acaaatgatg
     6961 caatacagta tagaaatcaa tggcaattta gaagtattcg atatagaaaa agtagctaaa
     7021 caagctgcag gtgctgtgct tatgcgacaa ggaaaaagtg tcgttttagc cgcggttgca
     7081 agagaggaaa agcctgttga agaagacttt ttgcctctaa ctgttcagta tatagaaaaa
     7141 gcctatgcag caggaaaaat cccgggcggc tatgttaaaa gagaaaccaa accaagcgat
     7201 gcagaaactt taactgcacg cattatagac agaagtttgc gtccactttt tccaaaagga
     7261 tatgcctacc cgacacaaat tgtcgtaatg gttctttctg ctgatcctca agtagatctt
     7321 caagttatga gtctaaatgc agcaagcgta gcactttatc ttagtgatat tcctatgaaa
     7381 gctcctgttt gtggagttcg cataggtcgc atagaagaaa aatttgtcct aaatccaaac
     7441 aatgaagaac ttaaaaatag cacccttgat ctttatgtag caggggttaa agatgagctt
     7501 ttaatgatag aaatgcgtgc tttacctaat caaaaagaag atgaaatctt tatcgaagtt
     7561 ccttatgcag atgttttaac ccaaacaact tcacaaagca tgaatgaact tagcgaagat
     7621 gaaattttag aagcgctaag tctagcccaa aaagctatat taaatggctc taatgcttat
     7681 gaagaagctt ttttgaaaca taaaaaatca agcgatttaa atttcaaaga tgaaatagaa
     7741 aatttcgaac ttctcgcctt tatagaaaat aattttcacg atcaaatcgt acaggctatc
     7801 aatcaaatgg caaaaagtga aagagcgagt gagttaaata aaattgctga aaaaatatta
     7861 aattttgaaa gcgcgacaaa atgggatgaa gaaagtattt taaatgccct agcaaaagtc
     7921 aaacataaaa tcgttcgtag ccaaatttta aatacaaaaa aaagagcaga tggtagaaat
     7981 ttaaatgaag tgcgtcctat tgccatagaa acaaatattt tacctaatgc acatggctct
     8041 tgccttttta cacgcggaca aactcaagct ttggttgtgg cgactttagg tagtgaaaat
     8101 gatgcgcaaa tggttgatgt gttaaccgaa aaaaatccta tcaatgaacg ctttatggtt
     8161 aattataatt ttccaggttt ttcagtaggc gaggcaagcc ctatcaaagc acctggaaga
     8221 agagagttag gacatggaaa cttagccaaa agagcccttt atccaagcat agatgaaaat
     8281 tatccttata ttatccgttt ggtaagtgaa attttagaaa gcaatggctc tagttctatg
     8341 gcaacggttt gtggagggtc tttagcctta agagcagcgg gagtacctag cttaaaactt
     8401 gtagcaggag tagctatggg gcttattttt gaaggcgatc aatatgctat tttaactgat
     8461 atcatgggct tagaagatca tgatggggat atggatttta aagtagcagg tagcaaagac
     8521 ggtatcacag ccttacaaat ggatatcaaa ttgggcggta ttgatcaaaa aatactcaaa
     8581 gaagccttgt atcaagctaa agaaggtaga attcatatct taaatatcat ggaagaagca
     8641 cttaaggaaa ttgttgttaa tgaagaggta ttgccaaaac tcgagctttt caatgttgat
     8701 ccttcaaaaa tagtcgatat cataggtcaa gctggaaaaa ctatcaaaga aattattgaa
     8761 aaatttggtg tttctataga cttagatcgt gaaaagggtg aagtaaaaat tgcgggcaat
     8821 gaaaacgaac aaattaaagc cgcaaaagat tatattatca atatcacaag ttctcaaaaa
     8881 aataataaaa aaggctttaa agaaaaagat ctatcaaact ttgaaatcgg cgaagaattt
     8941 gaaggaaaag tcaaaaaaat cacgaatttt ggagccttta tagaacttaa aaatggaatt
     9001 gatggcttgc ttcataattc taaaagtaaa aatctcaatt taagtgaaaa tcaaatttta
     9061 aaagtaaaag taagtgagat taaaaatggc aaaatctctg tggatttatg cgagtgagtg
     9121 agtttttaac tcatcctttt aaaccctttt ttgataagga ttctaaaatt ttaattttag
     9181 gatcttttcc ctcggtaaaa tcaagagaag atggatttta ctaccagcac ccaagaaatc
     9241 gtttttggcc tatactagaa acactttttg atacaagatt agaaaatata acaaaacaac
     9301 aagcgttttt aaaagaaaaa aatatcgcca tttgggatgt gcttcaaagc tgtaagatta
     9361 aaaattcaga tgataaaacc ataagttacg caaaggctaa tgatttaaat ttaatccttt
     9421 ctcaagcaca aatccaagct atttttacca cagggaaaag tgcttatcga ttttttacta
     9481 aatttcatcc tcatttaaaa gccatagccc taccctcaag ctctcctgca aatttaaatt
     9541 tttcttttga acaacttttg caaagctata aaataatcaa aaattttata aaataatttt
     9601 tgattacgta tgtaaaaaat acccaaaagc atatataaaa ataaaattat ttcacaaaaa
     9661 agtaatacat ataaaaacac accttcgcat ataaaaaaca taaatccaaa aaaggcaaat
     9721 aaaaataaag ctaaagttcc taaaaacaat ttagaaagat ctttagcaca aaaaatcata
     9781 taatttataa aaaaatcaaa cattttaaga tttatga
//
LOCUS       DBBXRO010000059         9744 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.060, whole genome shotgun sequence.
ACCESSION   DBBXRO010000059 DBBXRO010000000
VERSION     DBBXRO010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9744
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.060"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            108..1496
                     /locus_tag="ACJFEZ_001079"
     CDS             108..1496
                     /locus_tag="ACJFEZ_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013023629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HGG0917207.1"
                     /translation="MVVLLIICGIYYSFLTRFVQFRMLKSVFKILTERNENHTKEHIS
                     PFQALMISTASRVGIGNIAGISIAIAAGGAGALFWMWFMAFFGGASAFAESTLAQIYK
                     SKDNTGGFKGGPAYYIKKALGSHFFGAFFAFILIITYAYGFNGLQSQTMTSAFKVYYD
                     MFNPNATTDFASSSWPMIIGIILTLFGIWMFFSHHTKIGKVSSLIVPFMALAYILLAF
                     IAVLINFEKIPSVIVLIFESAFDFKAILGGFAGSALVIGIKRGLFSNEAGMGSAPNAA
                     AAALTSHPAKQGIIQAFSVLIDVIVCTSSGFLVLFSMAYFNVGADGKPLLTAMPLVQE
                     AMREYYGGFGVHFITIAIVLFAITSLIGNYYYAQANVKYLTNSKLVMNLFRITAVAMI
                     FIGSQMNLKLAWSLADLTMAFMAVTNIVSLLLLGGIVNKVLKDFNTQQDSKINPKFSA
                     SKLGIKNAECWD"
     gene            complement(1523..2251)
                     /locus_tag="ACJFEZ_001080"
     CDS             complement(1523..2251)
                     /locus_tag="ACJFEZ_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HGG0917208.1"
                     /translation="MIEIKNLNKKYGNLEVIKNISTKISKGDIISIIGPSGGGKSTFL
                     RCINRLELADSGEILIKGRNILDEQTDINKIRQKVSMVFQHFNLFANKNVLQNLCLAP
                     VKTGILSEDEAINKAEILLKKVGLSDKKEVIPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDLAAEGLTMIVVTHEMGFARNVANRIFFMNKGELAVDA
                     SPKEVFENPKNERLKEFLNKVLNH"
     gene            complement(2244..2987)
                     /locus_tag="ACJFEZ_001081"
     CDS             complement(2244..2987)
                     /locus_tag="ACJFEZ_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0917209.1"
                     /translation="MNQKNIRIFVFFAIILFWGYFSFPIEILQIKEADGAINYGYTPN
                     AQAYIKSYFITLLLTACSAIIGVVVGFSLAILRFSKIKVLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAIFALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPL
                     IFTGLVYYVSVKIFSYFAKKLELRMSKND"
     gene            3098..3235
                     /locus_tag="ACJFEZ_001082"
     CDS             3098..3235
                     /locus_tag="ACJFEZ_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917210.1"
                     /translation="MIALDFILIVAFVLFMIFLIVGFNYQMNEKAKIREEKFKNKERK
                     K"
     gene            3232..3801
                     /locus_tag="ACJFEZ_001083"
     CDS             3232..3801
                     /locus_tag="ACJFEZ_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1 family glyoxalase III"
                     /protein_id="HGG0917211.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAAELSGNLEVIIASLDN
                     ELLVKGANGISIKADCSLEAVDTKNLDAIALAGGFDGMNNLKNSNEILSIIKKLHSEG
                     KIVSAICASPIVLNAAGVLEGEFTCYPSCETGLQGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKQLCGDEIYNSLYEGLLIPLTK"
     gene            complement(3840..4205)
                     /locus_tag="ACJFEZ_001084"
     CDS             complement(3840..4205)
                     /locus_tag="ACJFEZ_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HGG0917212.1"
                     /translation="MKEKTVFELIVEGKIPCNKVLENNDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPKLMEKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFRLPKEKDENENPQALF"
     gene            4326..5318
                     /gene="pheS"
                     /locus_tag="ACJFEZ_001085"
     CDS             4326..5318
                     /gene="pheS"
                     /locus_tag="ACJFEZ_001085"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HGG0917213.1"
                     /translation="MQNFIEQIQECKNLNDLEALRVAVLGKKGILTESFAKLKDLAGE
                     EKKEFAAKLNSQKDAFNEAYLSKFKILENLALEEKMKQDALDFNYFDESPTNGALHPV
                     MSTMDRIIEYFVNLNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQRVSFANL
                     KSILEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGCGCRVCKQTGWLEVLG
                     CGVVDPNVFNFVGYKDVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            5315..7636
                     /gene="pheT"
                     /locus_tag="ACJFEZ_001086"
     CDS             5315..7636
                     /gene="pheT"
                     /locus_tag="ACJFEZ_001086"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HGG0917214.1"
                     /translation="MIITKSWLNDWLDFEDKSLDDIAHTLNSIGIEVDKICTLKVPDK
                     IVVGFVKEKVKHENSDKLSICQVDVGNEILQIVCGAQNVAQGQFVAVALKGALMPNGM
                     EIKEAKLRGVDSCGMLCSSTELGFEKINDGIMLLDDSIGKLELGKALNSYEIFNDGLI
                     EVELTPNRGDCLSIYGIARDLAVALNLNLKEKPPFKEGENVLGIGRILRLSAEKELNS
                     LYNYRAIELKEKIQTNLLISLRLAQIENFGKNPIENLLNYATHSTGVLFNAYDLNSFY
                     KENEEFTFSLVKETRGETKISYQDELLSVSGIYQEEKFKCKEDSKIIIIEANYTDPMI
                     IADAKMAYKKQDEQTIYRSFRGSEPKLNLGMDFLLSVLEKNPNLIIYSSSQQIITNKE
                     LSNIAISIESINKTIGQEIDKDEVLKILKKLGFELIISADGLVNVKAPMHRPDIKNLA
                     DICEEVVRIIGIDNIASKGLEFVEKNRLNSTYKNYKELVELRKKAVANGYFESLHYVL
                     DNEEELKSLGFNPIKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     VVFGTNNEELNHIAFVHSGYQEEPKISNKAKPELVNFYDFLLDLKNIIGDFKLKASKH
                     DILSPYEQADIYLKDLKIGFAGRLHLKIENERDLLKTYICELDLNLIKHHFKLAKPYS
                     KFPSISRDLSILIPKGFEYEKIKNCIEELDLENLENFRLVDLYSDANLENSYSLTLKF
                     VFRDMNKTLEEAQVAEHMDKILQSFKEMGLELR"
     gene            7633..8913
                     /gene="aroA"
                     /locus_tag="ACJFEZ_001087"
     CDS             7633..8913
                     /gene="aroA"
                     /locus_tag="ACJFEZ_001087"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HGG0917215.1"
                     /translation="MKINALESFNTEISDIAADKSISHRFAIFSLLTQSENRAKNYLL
                     AEDTLNTLKIIENLGAKVKREGSSVSIMPPSEILSPNCVLECGNSGTAMRLMIGFLAG
                     VSGFFVLSGDKYLNNRPMKRICKPLSEIGAKIYGREQANLAPLCIEGQKLKAFDYKSE
                     ISSAQVKTAMILSAFRADKTSKFSEISLSRNHSENMLKAMNAPLKISDDYLSLEISPL
                     NQALKAQDILIPNDPSSAFYFALAAIILPNSKVVLKNILLNPTRIEAYKILQKMGAKL
                     EIKITQNDFETIGEIHASSSELKAVEVKENIAWLIDEAPALAIAFALAKGKSKLINAK
                     ELRVKESDRIAATVENLKLCGVNAKELEDGFEIEGSQIKKAKIKSYGDHRIAMSFAIL
                     GLLCGMEIDESECIKTSFPNFMDILTKIGARIDY"
     gene            8903..9733
                     /locus_tag="ACJFEZ_001088"
     CDS             8903..9733
                     /locus_tag="ACJFEZ_001088"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HGG0917216.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEIARL
                     QKNFNVKTLENIRALSDEKKAIIRTHGITKQDLEELKKKDIEIFDATCPFVTKPQQIC
                     EQMSAEGYDVVIFGDENHPEVKGVRSYVATKAYVVLDKKDLENIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILRVKEVRVFNTICDATFKNQDAIKELSVKSDVMVVVGGKNSANTK
                     QLFLIAKANCEDSYLIETEEELQKEWFLNKTHCGISAGASTPDWIIKKVIAKIESFKC
                     "
BASE COUNT         3411 a         1336 c         1691 g         3306 t
ORIGIN      
        1 aaaggagaaa tatgggtgag caaaatttaa ctttaaaccc ctcagttcca ttcgatgaaa
       61 agatattaaa aattctcgaa tatgttctgc catatactga tactataatg gtagttttac
      121 ttataatctg cggaatttac tatagtttct taactagatt tgtacaattt cgcatgttaa
      181 aatccgtttt taaaattcta actgaaagaa atgaaaacca taccaaagag cacatatctc
      241 cttttcaagc tttgatgata tcaacagctt ctagggtagg tataggaaat attgcaggca
      301 tctctatcgc gatcgctgca ggaggagcgg gtgctttatt ttggatgtgg tttatggcgt
      361 tttttggtgg tgcttcagct tttgcagaaa gcactttagc acaaatttac aagtctaaag
      421 ataatacagg aggatttaaa ggtggtcctg cttattatat aaaaaaagct ttaggttctc
      481 atttttttgg agcttttttt gcttttattc ttattattac ttatgcttat ggatttaacg
      541 gacttcaaag tcaaactatg acttcggctt ttaaagttta ttatgatatg tttaatccta
      601 atgctacaac agattttgct tcaagttctt ggcctatgat tattggtatt attttaaccc
      661 tttttggaat ttggatgttt ttttcacatc atacaaaaat aggtaaagta agctctttaa
      721 tcgtcccttt tatggcatta gcttatatct tacttgcctt tatagctgtt ttgattaatt
      781 ttgaaaaaat tccttctgta atagtgctta tatttgaaag tgcttttgat tttaaagcga
      841 ttttgggtgg atttgctggt tctgctttgg ttataggaat taaaagagga ctcttttcaa
      901 atgaggcggg catgggttct gctccaaatg ctgccgctgc tgctcttaca agtcaccctg
      961 caaaacaagg tattatacaa gcgttttcgg ttttgattga tgttattgtt tgtacaagtt
     1021 caggattttt ggttcttttt tctatggcat attttaatgt tggagccgat ggaaaacctc
     1081 ttttaaccgc aatgccttta gtacaagaag caatgcgtga atattatggc ggttttggag
     1141 tccattttat tactatagct attgttttat ttgctatcac ttctttgata gggaattact
     1201 attatgccca agctaatgta aaatatctta caaattccaa attagtcatg aatttgttta
     1261 gaattactgc tgtagcaatg atttttatag gttctcaaat gaatttaaaa cttgcttgga
     1321 gtttagcgga tttaactatg gcgtttatgg cagttacaaa tattgtttct ttacttcttt
     1381 tagggggtat agtcaataaa gtattgaaag atttcaacac ccaacaagac tctaaaataa
     1441 atccaaaatt cagcgcttca aaactaggta ttaaaaatgc tgaatgctgg gactgattaa
     1501 aaagccttaa ttttaaggct ttttagtgat ttaaaacctt atttaaaaat tctttcaatc
     1561 tttcattttt tggattttca aatacttctt tagggcttgc atccactgca agttctcctt
     1621 tattcatgaa aaaaatgcga ttagcgacat ttctggcaaa acccatttca tgagtaacta
     1681 ctatcatagt aagcccttca gcggccaaat ccttcatgat acttaaaact tctcctatca
     1741 tttcaggatc aagtgctgaa gtaggctcat caaataaaat tacatcagga ttcatcatca
     1801 aacttcttgc tatggcaatg cgttgctttt gtccgcctga aagtttgtgc ggtattacct
     1861 cttttttatc ggataatcct acttttttaa gtaaaatttc agctttattt atagcttcat
     1921 cttcgcttaa gattcctgtt tttactgggg ctaagcataa gttttgcaat acatttttat
     1981 tggcaaaaag attaaaatgt tgaaatacca tgctgacttt ttgacgaatt ttattaatat
     2041 cagtttgttc atctaagata ttgcgtcctt tgataagaat ttctccactg tctgcaagtt
     2101 ccaagcggtt aatacaacgc aaaaaagtac tttttccacc cccacttgga cctatgatgg
     2161 atataatatc gcctttggaa attttggtgc tgatattttt aataacttct aaatttccat
     2221 attttttatt taaattttta atctcaatca tttttgctca tccttaactc aagtttttta
     2281 gcaaaataac taaaaatttt tacacttaca taatacacaa gtcctgtaaa aataagaggt
     2341 tttggattgt ataataccgc ttgaaggctt tggctttgca tagtaatatc aataacgctt
     2401 ataaatccaa ccacggaagt ttctttaaac aaagaaataa attcattagc caaagcgggt
     2461 aaaatgtttt tggtcgcttg tggtaatata atttctttca ttgaagtttt ataatcaagc
     2521 cccatagcac gcgctgcttc catttgtcct ttatcgacac tattaatccc gcttcttacg
     2581 atttctgcta tataagcaga gctattaagc cctagggcaa atattgctgc ataaagatta
     2641 tcaataaaag taaaaattac aaaagcaaaa atcataagtt gtaatattac aggggttcct
     2701 cttataatat caatatattc atctatgata aaatttaaga ctttaatttt agaaaagcgc
     2761 aagatagcaa gactaaaacc aacaactaca ccaataattg ccgagcaagc agtaagtaaa
     2821 agagtgataa aataactttt tatgtaagct tgcgcatttg gagtgtatcc gtaatttata
     2881 gccccatccg cttctttaat ttgtaaaatt tcaataggaa aagaaaaata tccccaaaaa
     2941 agaatgatgg cgaaaaatac aaatattctt atattttttt gattcaaatc ttaaccttta
     3001 ttcaaaaatt tttaacttaa attctataaa attatcgttt gatttttctt taaagatttg
     3061 taataatatg atagaatttt aaaaaaggtt ttgcgatatg atagctttag attttatttt
     3121 aatcgtagct tttgtgcttt ttatgatatt tttgatagtg ggatttaact atcaaatgaa
     3181 tgaaaaagct aaaattcggg aagaaaaatt taaaaataag gagagaaaaa aatgagtaaa
     3241 aaagtattga ttcctttggc tcaaggattt gaagaagctg agtttatagg tatagcagat
     3301 gtattaaaaa gagctgcgga attaagtggg aatttggaag ttattatcgc ttctttggat
     3361 aatgaacttt tggtaaaagg tgcaaatggg atcagcataa aagcggattg ttctttagaa
     3421 gctgtagaca ctaaaaatct cgatgcaata gccttggcgg gtggttttga tggtatgaat
     3481 aatcttaaaa attcaaatga aattttaagt attattaaaa aactacacag tgaaggcaag
     3541 attgtttctg caatttgtgc ttctcctata gtattaaatg ctgctggagt tttagagggt
     3601 gaatttactt gctatccaag ttgcgaaaca ggtcttcaag gaaatagagt gaataaagct
     3661 gtagttgtaa ataaaaatgt tattacaagt gcaggtcctg caacggctat tttatttgga
     3721 ttagagcttg caaagcaact atgcggtgat gaaatttata attcattata tgaaggtttg
     3781 cttattcctt taacaaaata agcattttgt tatgatagtg taaaaaacac tatcataaat
     3841 taaaataaag cttgaggatt ttcattctca tctttttctt taggaagtct aaagccaccc
     3901 aacatatgaa aatgtagatg aaaaacttct tgaccgctgt ttttgccaca atttgttacc
     3961 aagcgatatc cacttttatc cactcctaaa agtacagcca attcttgtat aaaacttgtc
     4021 attttttcca taagcttagg atcaaattct tgaaaatctt taaaatgttt tttcgggata
     4081 ataagtatat gaatgggcgc cttaggagct atatcatgaa aagctaaaaa atcattattt
     4141 tcaagtactt tattgcaagg aatttttcct tcaacaatga gttcaaaaac agttttttct
     4201 ttcattattt atccttcttt agtgttaatt ttatacaatt atatctttaa actttagttt
     4261 ttatgctgaa tttaaaatag tttttaataa aattaaaact aaaaataact tattaaggta
     4321 gaaaattgca aaattttatc gaacaaattc aagaatgtaa aaatttaaat gacttagagg
     4381 ctcttcgagt tgctgtcctt ggaaaaaaag gtatcttaac agagagtttt gcaaaactaa
     4441 aagatttagc gggcgaagaa aagaaagaat ttgcagctaa attaaattct caaaaagatg
     4501 cttttaatga ggcttattta tcaaaattta aaattttgga aaatcttgct ttagaagaaa
     4561 aaatgaagca agatgctctt gattttaact attttgatga aagtcctaca aatggtgctt
     4621 tacatcctgt tatgagtact atggatagaa ttatagagta ttttgtaaat ttaaatttta
     4681 gcatagaaaa aggcccttta atagaagatg attttcataa ttttgaagct ttaaatttac
     4741 caaaatctca tccggcaaga gatatgcaag atacttttta ttttgacgat aaaagacttt
     4801 taagaactca aacttctcct gtgcagattc gaaccatgct tgcacaaaaa ccacccatta
     4861 gaatgatagc tccaggagca gtttttagaa gagattttga tatcacccat actcctatgt
     4921 ttcatcaagt agaagggctt gtagtagaag aagggcaaag agtaagtttt gcaaatttaa
     4981 aaagtatttt agaggacttt ttgcgttata tgtttggaga tgtaaaagtg cgttttcgtc
     5041 ctagtttttt cccatttaca gaaccatcag cagaagttga tatttcgtgt gtattttgca
     5101 agggttgtgg atgtagggtt tgtaagcaaa cgggttggct tgaggtttta ggatgcgggg
     5161 ttgtagatcc taatgtattt aattttgtag gttataaaga tgtaagtggc tatgcttttg
     5221 gtcttggtgt agaacgcttt gcaatgcttt tacatcaaat tcctgatcta agatctttat
     5281 ttgaaggtga tttaagacta ttggagcaat ttagatgata attactaaaa gttggttaaa
     5341 tgattggtta gattttgaag ataaaagttt agatgatata gcgcatacat taaattctat
     5401 aggtatagaa gtagataaaa tttgcacctt aaaagtgccg gataaaatcg tagtgggttt
     5461 tgtcaaagaa aaagtaaagc atgaaaattc tgacaaatta agcatttgtc aagttgatgt
     5521 tggaaatgaa atcttgcaaa tagtttgcgg agcccaaaat gtcgcacaag ggcaatttgt
     5581 cgcagtggcc ttaaaaggtg ctttaatgcc aaatggtatg gagatcaaag aggctaaatt
     5641 acgaggagta gattcttgcg gtatgctttg ttctagcaca gaattaggct ttgaaaaaat
     5701 caatgatggc attatgcttt tagacgatag tataggcaaa ttagagcttg gaaaagcttt
     5761 aaattcctat gaaattttta atgatggttt gatcgaagtt gaattaactc caaatagggg
     5821 agattgtctt agtatttatg gtatagcacg cgatttagca gtggctttga atttaaactt
     5881 aaaagaaaaa ccacctttta aagaagggga aaatgtttta ggcataggtc gtattttacg
     5941 cttgagtgct gaaaaagaat taaacagtct ttataattac agagctatag aattaaaaga
     6001 aaaaattcaa accaatctac tcattagttt aagattggca caaatagaaa attttggaaa
     6061 aaaccctata gaaaatttat taaattacgc aacacactct acgggtgtac tctttaatgc
     6121 ttatgatctc aattcttttt ataaggaaaa tgaagaattt acttttagct tagtcaaaga
     6181 aacacggggt gagactaaaa tttcttacca agatgaactt cttagtgtaa gcggaattta
     6241 ccaagaagaa aaatttaaat gcaaagaaga ttctaagata atcatcatcg aggcaaatta
     6301 tactgatcca atgattattg cagatgcaaa aatggcttat aaaaagcaag atgagcaaac
     6361 tatttataga agttttagag gaagtgagcc taaattgaat ttaggtatgg attttttatt
     6421 gagcgtttta gaaaaaaatc caaatttgat tatttatagc tcctcacaac aaattataac
     6481 aaataaggaa ttgtctaaca tagcaatcag tattgaaagc attaataaga ctataggtca
     6541 agaaatcgat aaggatgaag ttttaaaaat tcttaaaaaa ctaggttttg aacttataat
     6601 ttccgctgat ggacttgtta atgttaaagc ccctatgcat cgccctgata taaaaaatct
     6661 agctgatatt tgtgaagaag tagtgcgtat tataggtatt gataatatcg cttcaaaagg
     6721 tttggaattt gtagaaaaaa atcgtttaaa ttccacttat aaaaattata aagagctagt
     6781 agaacttaga aaaaaagcgg tagctaacgg atattttgaa agtttgcatt atgttttaga
     6841 taatgaagag gagctaaaat ctcttggttt taatcctata aaattaaaac ttatcaatcc
     6901 aattactgca gagttaaaca ctctaagaac aacgctttta aaccatcttt taaacgcagc
     6961 aagtttaaat gcgaaaaatt ctaaaaagat tattaagctt tttgaacttg gagtagtttt
     7021 tggaactaat aatgaagaac tcaatcatat agcttttgta cattcaggct atcaggaaga
     7081 gcctaaaatt tcgaataaag caaagcctga attggtaaat ttttatgatt ttcttttaga
     7141 tcttaaaaat atcataggag attttaaatt aaaagcttca aagcatgata ttttaagtcc
     7201 ttacgagcaa gctgatattt acttaaaaga tttaaaaata ggttttgcag gtcgcttgca
     7261 tttaaaaata gaaaacgaaa gagatttgct aaaaacatat atttgcgaac ttgatttaaa
     7321 tttgattaaa catcatttta aattggctaa accttattct aaattcccaa gcattagcag
     7381 agatcttagc atacttatac ctaagggttt tgaatatgaa aaaattaaaa attgcataga
     7441 agaattagat ttagaaaatt tagaaaattt ccgcttggtt gatttgtata gcgacgcaaa
     7501 ccttgaaaat tcttatagtt taactcttaa atttgttttt agagatatga ataaaacctt
     7561 agaagaggct caagttgcag aacatatgga taaaatttta caaagcttta aagaaatggg
     7621 gcttgaatta agatgaaaat aaatgcctta gaatctttta atactgaaat ttctgatata
     7681 gcagcagata aaagcatatc tcatcgtttt gctatttttt cacttttaac ccaaagtgaa
     7741 aatagggcta aaaattatct tttagctgaa gatactttaa atactctgaa aataatagaa
     7801 aatttaggag ctaaagtaaa gcgagaaggt tctagtgtaa gtattatgcc gcctagtgag
     7861 atactttctc ctaattgtgt tttagaatgc ggaaattcag gcactgcaat gcgtttgatg
     7921 ataggatttt tagcgggtgt ttcaggcttt tttgttttaa gtggcgataa atatcttaac
     7981 aatcgcccca tgaaaagaat ttgtaaacct ttaagtgaaa ttggtgcaaa aatttacggc
     8041 agagaacaag caaatttagc tccactttgt atagaaggac aaaaactaaa agcttttgat
     8101 tataaaagtg aaatttcttc agctcaagtt aaaacagcta tgattttatc tgcttttaga
     8161 gcggataaaa cttccaaatt tagcgagata tctttaagta gaaatcatag tgaaaacatg
     8221 ctaaaagcta tgaatgcacc tttaaaaatc agtgatgatt atttaagcct tgaaatttct
     8281 cctttaaatc aagctttaaa agctcaagat attcttatac ctaacgatcc ttcttcggct
     8341 ttttattttg ctttagctgc gattatttta cctaattcta aagtagtttt aaaaaatatt
     8401 ttactcaatc ctacacgtat tgaggcttac aaaattttgc aaaaaatggg tgcaaaactt
     8461 gaaataaaaa ttacacaaaa tgattttgaa accataggcg aaattcatgc aagctcaagc
     8521 gagttaaaag cagtagaagt taaagaaaat atagcttggc ttatagatga agcacccgct
     8581 ttagctatag catttgcttt agcaaagggt aaatctaaac tcatcaatgc taaagaactt
     8641 cgggtaaaag aaagcgatag aattgctgct acggttgaaa atttaaaact ttgtggagta
     8701 aatgctaaag aacttgaaga tggttttgaa atcgaaggct ctcaaatcaa aaaagctaaa
     8761 ataaaaagct atggggatca ccgtattgcc atgagttttg cgattttagg cttactttgc
     8821 ggaatggaga ttgatgaaag tgagtgtatt aaaacttctt ttcctaactt tatggatatt
     8881 cttacaaaaa taggagctag gattgattat tgaattagct aaaaattatg gcttttgttt
     8941 tggtgtaaaa agagcaatta aaaaagctga acaaattaaa gatgcggcaa ccatagggcc
     9001 gcttatccat aataatgaag aaattgctcg cttgcaaaag aatttcaatg ttaaaacctt
     9061 agagaacata agagctttaa gtgatgaaaa aaaagccatt ataagaacac atggaattac
     9121 taagcaagat ttagaagagc ttaaaaagaa agatattgaa atttttgatg caacttgtcc
     9181 ttttgtaacc aaaccacagc aaatttgtga acaaatgagt gcagaaggct acgatgtggt
     9241 aatttttggc gatgaaaatc atcctgaagt taagggtgta agaagctatg tagccacaaa
     9301 agcttatgta gttttagata aaaaagatct tgaaaatatt aaattaccta ataaaatagc
     9361 agttgtaagt caaacgacta aaaaacctga acattttatg gaaatagtta attttttaat
     9421 tcttagggtt aaagaagtaa gagtttttaa tacaatttgt gacgcaactt ttaaaaatca
     9481 agatgctatt aaagaacttt ctgtcaaaag tgatgtgatg gtagttgtcg gaggtaaaaa
     9541 ttcagccaat accaaacaac tttttttaat agctaaggca aactgcgaag atagctattt
     9601 gatcgaaacc gaagaagaat tgcaaaaaga atggttttta aataaaacac attgcggaat
     9661 tagcgctgga gctagtacgc ctgattggat tattaaaaaa gttatagcca aaatagaatc
     9721 gtttaagtgc taaaattgtg atat
//
LOCUS       DBBXRO010000060         9716 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.061, whole genome shotgun sequence.
ACCESSION   DBBXRO010000060 DBBXRO010000000
VERSION     DBBXRO010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9716
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.061"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..545
                     /locus_tag="ACJFEZ_001089"
     CDS             <1..545
                     /locus_tag="ACJFEZ_001089"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HGG0917217.1"
                     /translation="NLKANYIKILTKTDKQLLQHNDFLKLNHFKEILNHKQMILKKDE
                     IKLKKFTFISKASHEDSKEIYSFFRKYFDPYLFYFSQKNLEEKIPNILVYKENQKIRA
                     ALIYTQTLNANFLDFIAVDRNLKHKNVAFALLNHYFAANTQNKFFKLFVEEKNQKAIN
                     FYKRAGFCFNHINLKFYRNF"
     gene            545..1266
                     /locus_tag="ACJFEZ_001090"
                     /pseudo
     CDS             545..1266
                     /locus_tag="ACJFEZ_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049948.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0016742 - hydroxymethyl-, formyl- and
                     related transferase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formyltransferase family protein"
     gene            1268..1495
                     /locus_tag="ACJFEZ_001091"
     CDS             1268..1495
                     /locus_tag="ACJFEZ_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0917218.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(1492..2561)
                     /locus_tag="ACJFEZ_001092"
                     /pseudo
     CDS             complement(1492..2561)
                     /locus_tag="ACJFEZ_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            2663..3682
                     /locus_tag="ACJFEZ_001093"
     CDS             2663..3682
                     /locus_tag="ACJFEZ_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HGG0917219.1"
                     /translation="MNLKLNSHNIKAISIVLPKNPHTLEKELQECNLNQKKYELLKQN
                     TGINHHFISPNNIYASDLASKALEKLFRENLLLKDELDVLLVYSFSPDFLAPALSSLI
                     HKNLGLSEKTLCFDNIAFCPGFLQGLMQAFSLLDNENIKKIAFICVSVKSKKIPKKDK
                     ITYLSNSDSASVILLEKSNTKEKAFFSQKIFSKLATEETFPLKCFKEANDFIDMDKNL
                     TFSHLNENFPRFFDDFFDNFKLDKSKIGEFFFGSANNFIKTKLLELLNFKEIKNDETL
                     KNYGDVTINKLAFDLANYEWRKGGGIKQVFMASFGTGITFNAMSLKIDFSKIKNFIEI
                     IDFNT"
     gene            complement(3995..5206)
                     /locus_tag="ACJFEZ_001094"
     CDS             complement(3995..5206)
                     /locus_tag="ACJFEZ_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0917220.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVIHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     VNGILKNINLGHLSVNKDNFEQIIPLIEQKANEMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPEFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGVCLPFLAHILGRDMNQGEFVFEGDNNRIYCFVQKYWTRNINSSYYFGDENYLIR
                     AVLNSNHLKIQASMNNNTIFISYHSMQDMGAPVQNKIELYKCYQELGYDATLYLVKDE
                     NDIDGRFIKSLEHGLRMTDKALFRKELPLMLEKLQGRKFDMSKNSITYPCKDKQFIFK
                     DKDDKFELEIV"
     gene            5286..5984
                     /gene="pseF"
                     /locus_tag="ACJFEZ_001095"
     CDS             5286..5984
                     /gene="pseF"
                     /locus_tag="ACJFEZ_001095"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070567 - cytidylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HGG0917221.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            5968..6792
                     /gene="pseG"
                     /locus_tag="ACJFEZ_001096"
     CDS             5968..6792
                     /gene="pseG"
                     /locus_tag="ACJFEZ_001096"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HGG0917222.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYDDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            6789..7262
                     /gene="pseH"
                     /locus_tag="ACJFEZ_001097"
     CDS             6789..7262
                     /gene="pseH"
                     /locus_tag="ACJFEZ_001097"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HGG0917223.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(7227..7973)
                     /locus_tag="ACJFEZ_001098"
     CDS             complement(7227..7973)
                     /locus_tag="ACJFEZ_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HGG0917224.1"
                     /translation="MLKTRIIPCVLLKNSQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGEQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(7974..8579)
                     /gene="hisH"
                     /locus_tag="ACJFEZ_001099"
     CDS             complement(7974..8579)
                     /gene="hisH"
                     /locus_tag="ACJFEZ_001099"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HGG0917225.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQDPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            complement(8576..9712)
                     /gene="pseA"
                     /locus_tag="ACJFEZ_001100"
     CDS             complement(8576..9712)
                     /gene="pseA"
                     /locus_tag="ACJFEZ_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HGG0917226.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEVKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHSVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
BASE COUNT         3532 a         1608 c         1227 g         3349 t
ORIGIN      
        1 ttaatttaaa ggctaattat ataaaaatct taaccaaaac cgataagcaa cttttacaac
       61 ataatgattt tttaaaactc aatcatttta aagaaatact caatcataaa caaatgatac
      121 tcaaaaaaga tgagataaaa ttaaaaaaat ttacctttat ctctaaagct tcacatgaag
      181 atagcaagga aatttatagc ttttttagaa aatattttga tccatatttg ttttattttt
      241 cacaaaaaaa tcttgaagaa aaaataccca atatacttgt ttataaagag aatcaaaaaa
      301 ttcgcgctgc tttgatctac actcaaactc tcaatgctaa ttttttagat tttatagctg
      361 tagatagaaa tttaaagcat aaaaatgtgg cttttgcttt actaaatcat tattttgcag
      421 ccaatactca aaataaattc tttaaacttt ttgtagaaga aaaaaatcaa aaagccatta
      481 atttttataa aagggcgggt ttttgtttta atcatattaa tttaaaattt tataggaatt
      541 tctaatgact tactcatata tttacatcat aggcacaggc aaagtagcca aagaatgcca
      601 aaaaatagct aatgattttt tcagacaaga agtaaatttt gtaaaaaata tagaaaattt
      661 agatgatttc tttaaaaatc ttaaaaattg ccttattatt agtgctaata atttttatat
      721 tttcaaaaaa gaatgtattc aaaaaaatac tattattaat taccacaacg cattattacc
      781 ttttcacaga ggatgcaatg cacatatttg gagtatatgg gaaaacgata aaaaaaacag
      841 gtattacttg gcatatggtt aaagaaagta tagatacagg tgatatttta gttcaaaaag
      901 aaataaaact tgataataat tgtactgctt taagtctttt aaacgctcaa cacaaacttg
      961 ctctaacttt atttagagaa gctttagaaa ttttaaaaaa taaagctttt aaaatgcaaa
     1021 tttcaggggg gggggtatca caaaaaatta tctttaccaa ataatggtta tttagatctt
     1081 acttgaaata aagaaaaaat ttctcgcttt ttaagagcta tggactgcgg tgccttaagc
     1141 ggagttccta aagctagatt agaaatatta ggtgaagaaa gagaaatttt attttatgaa
     1201 atcaatgagc ttgatttaat tttaaattta agcgataatg tcattttaaa aatcacaaag
     1261 gaataaaatg caagaaatca aacaattttt tatcaatata gaaagaacag atatcaatga
     1321 gagtatggaa aatctagtaa gtgaagattt tatcgatagt atcgatatca tggctttggt
     1381 tgccgaaata gaaaaatttt ataaaaaacc cttaaaagca gaatttatca cacctgaaaa
     1441 ttttgaaagc tttgaaaata tcaaaaaaat gcttgaaact gcaatgaaag actaatcttt
     1501 ccttgcaagt tcaagctgtt cttttaaaga actgatgatt tcatttttag aaacaataat
     1561 ttgtgctata aaatccgcca catcatccca atctttactt agcatatggg ttaaagtata
     1621 attttgttca tattcttccc aattcacagg agtaaaaaga gaatttttat gcgggaaata
     1681 tttgtttttt acccattcaa gtgaagaagc aaaataatcc acataagctt tagcaatatc
     1741 tttttgcact gcaaatttta atcttttttc tttgctgcct tcaaattttc ttcttgccat
     1801 aaaaagcaaa gaattaagat tatcctgctt taaatctttt tgatttaatc ttgacataag
     1861 ctccattcct aaaagattaa aactttcatt tttggtttgt tttaaaacaa aactctcatc
     1921 ccattcaagt cttaaatgat aaacaaaatc cttaagtaaa gtccctccta cataatcctc
     1981 ccttagaagt cttactatca aattttcttc tccaaatacc tcagcatgag ttttgcaaat
     2041 ccattcatag tcaaaaatat attttctagg atgatcttgc ggagcaaaat cagcagaata
     2101 atactccata ttgtttttat gatcttgaga gcaatgtgag tttaaataac ccaaagtatc
     2161 tctaaaatac acaataatat aaatttgagt aaaacctaac tctctcataa tcttttctaa
     2221 aatttctaca tgttttttgg tagaaaaatc ccaaactata ccctcagctg aaaaaataaa
     2281 tttttatctt tatgtaaagc actttcgctt ttaaaatttt ctatagctct aagaagtctt
     2341 tcatttgtga tatgacttaa aatactctct ttttgcaaaa tatcttcttt ttgaactagt
     2401 tctaaaacca tatctaccaa agcccaatgc ctatttgcca ctctaaggct ttttggataa
     2461 atatagcctt tttttaaaag cctttcttcg ttttgcatca agaagccttg tttttcttga
     2521 tttcctgtat tagtagttcc tatatgtaaa tatgctgtca ttttatatcc tttctttaca
     2581 aaaaattata ctccgtttgt gcttaaattt ttaagcattc ataagttaca atttatctat
     2641 taaatactag aaagaagtaa aaatgaattt aaaattaaac tcacacaata ttaaggctat
     2701 tagtatagtt ttacccaaaa atccacatac cttagaaaaa gaattacaag aatgcaattt
     2761 aaaccagaaa aaatacgaac ttttaaagca aaataccggt ataaatcatc atttcataag
     2821 ccctaataat atctatgcaa gtgatttagc aagcaaagca ctagaaaagc tttttagaga
     2881 aaatttgctt ttaaaagatg agcttgatgt acttttagtt tatagttttt caccagattt
     2941 tctagcccct gcactttcaa gtttaatcca taaaaatctt ggtttaagtg aaaaaactct
     3001 gtgttttgat aatattgctt tttgcccagg atttttacaa ggcctaatgc aagctttttc
     3061 tttactagat aatgaaaata tcaaaaaaat agctttcatt tgcgtaagtg taaaaagtaa
     3121 aaaaataccc aaaaaagata aaatcaccta ccttagtaat agcgacagtg ctagtgttat
     3181 tttgcttgaa aaatctaata caaaagaaaa agcttttttc tcgcaaaaaa tcttttccaa
     3241 attagccaca gaagaaactt ttcctctaaa atgctttaaa gaagcaaatg attttatcga
     3301 tatggacaaa aatctcacat tttctcactt aaatgaaaat tttcctcgat tttttgatga
     3361 tttttttgat aattttaaac ttgataaaag caaaataggc gaatttttct ttggaagtgc
     3421 aaataatttt ataaaaacta aattattaga actcttaaat ttcaaagaaa ttaaaaatga
     3481 tgaaacttta aaaaattatg gcgatgttac gataaataaa ttagcctttg atttggcaaa
     3541 ctatgaatgg aggaaggggg ggggcataaa acaagttttt atggctagtt ttggcacagg
     3601 aattaccttt aatgccatga gtttgaaaat tgattttagc aaaattaaaa actttatcga
     3661 aattattgat tttaatactt gaaaaaatat actatgtttc aagcgtagat tttatttaag
     3721 cataggctaa aacaatgcgg tggaaaaatt agagttattt atcaactcaa gcaactcatt
     3781 tgccatcttc aacagaaaat tattttaaag tctttttcta ttattggtag cacctttttc
     3841 accaagagaa attaaccact taaacaaatc attatacaaa aatatttcac tttttttaaa
     3901 aaaatcataa atttaatttt tatattaggc aaggaaatat ccatctacaa agcccctccc
     3961 tagcaatcct ttcttaactt tactaacgat aatcttaaac aatttcaagc tcaaatttat
     4021 catctttatc tttaaaaata aattgcttgt ctttgcaagg ataagtgata gaatttttac
     4081 tcatatcaaa ttttcttcct tgtagttttt caagcatcaa aggaagttct tttctaaata
     4141 aagctttatc agtcattcta agaccgtgct ctagactttt tataaatcta ccatctatat
     4201 cattttcatc ttttaccaaa tacaaagtcg catcatatcc taattcctga taacacttat
     4261 aaagttctat tttattttgc actggagcgc ccatatcttg catgctgtga tagcttataa
     4321 agatagtatt attgttcata cttgcttgaa ttttgagatg atttgagttt aaaacagctc
     4381 taattaaata attttcatca ccaaaataat aagaagaatt tatatttcta gtccaatatt
     4441 tttgcacaaa acaataaatt ctattattat ctccttcaaa aacaaattct ccttgattca
     4501 tatctcttcc caaaatatgt gctaaaaatg gcaagcaaac tcccgaatta tcaatcacgc
     4561 catccacata ccaaggagct atctttgcta tgagtaaaga taggtatcct ccataagacc
     4621 cccccccata aatttttggt aaatctgcaa attctggaaa acgtttaact aaatctttta
     4681 aagcattgat atgatcaata gctgccataa tgccatagtt ttgataatct ccattaggtg
     4741 ggataaaatc acaagaaagt tctatttttt ggctttcatc aaccaaacct gcttgtttca
     4801 tttcattagc tttttgctct ataagaggaa taatttgttc aaaattatct ttattaaccg
     4861 ataaatgtcc taaattaata ttttttaaaa taccatttac acgctctaaa tcatcttgat
     4921 tgggaataag ctttggatta tacttttgat caatactttg tcttgcacaa aaacaatgat
     4981 aaaaaacatg tatcactaca acatcaaaat ttttagcaat atattcccta tcaaaatcta
     5041 aaaaagaaat atttgcatta gctccaaaac cacccactat aaaaactatg gctttaatat
     5101 ctttttcatc atcataactt atgcgatatt caagcttact ggttctttta atacctagtt
     5161 ctacatcatc acaagaatcg atttcaaagg tttggtttat aagcaatttt aagcctttta
     5221 ttgtatttta aagacaatta tacttaaatt ttagtaaaat aaaacacaaa aaacaaggct
     5281 taactatgaa aaatctttgc ataatccctg ctcgtggtgg atcaaaaaga attcctagaa
     5341 aaaatatcat tgatttccta ggcaaacctt taatcgctta tagcatagaa aatgctttaa
     5401 attcaggtat ttttgatgaa gtggtgcttt caagtgatga tgaagaaatc atagaagtag
     5461 ccttaaaata cggtgcaaaa gctccttttg tgcgtgataa aaatttaagc gatgattatg
     5521 cttcaagcac tgctgtagtg caaaatgcca tagaaatttt acaaagccaa aatcaaattt
     5581 atgatcatgt ctgctgcctt tatgctactg ctccgctttt aaataaagac attttaaaac
     5641 aagcctatga aaaatttata caaaatcaaa gcaagttttt atttgctgct actgagtttg
     5701 agtatcctat acaaagggca ttttatctaa atgaaaacaa tcaagtttat atgtttgatg
     5761 aaaaacatta taaaagtcgt tcacaagatc taacaaaagc ttatcatgat gcaggagctt
     5821 tttattttgg tacaagcaaa gcttggcttg aggaagattt tatatttaaa cctcattcta
     5881 gcgtgtttgt attgccaaga aatttagttt gcgatataga caccatacaa gatttggaat
     5941 ttgcaaaaat actttataag gtaaatcatg aaagtgcttt ttagaagcga tagctccagt
     6001 caaataggct ttggacacat taaacgcgat ctagtcttag ctaaacaata tgatgatgta
     6061 agttttgctt gcttgccttt agaaggctcc ttgatcgatg aaattcctta tcctgtttat
     6121 gagcttagta gcgaaagtat ctacgagctt atcaatctca tcaaagaaga aaaatttgaa
     6181 cttcttatca ttgatcacta tggcatcagc gtagatgatg aaaaactgat caagcttgaa
     6241 acaggggtga aaattctaag ctttgatgat gaaataaagc ctcatcattg tgatatttta
     6301 ctcaatgtca atgcctatgc aaaagcaagt gattatgaag gtttagtgcc ttttaaatgc
     6361 gaagtaagat gtggtttttc ttatgcttta atcagggaag aattttatca agaggccaaa
     6421 gaaaatagag aaaaaaaata tgattttttc atttgcatgg gtggaactga tataaaaaac
     6481 ctttctttac aaattgctag cgaattacct aaaacaaaaa tcatcagcat tgcaaccagc
     6541 tcttctaatc ctaatcttaa aaaattgcaa aaatttgcaa aattacataa caatattaga
     6601 ttatttatcg atcatgaaaa tattgcaaaa ttgatgaatg aaagcaataa actcatcatt
     6661 agtgcaagtt ctttagtcaa tgaagccttg cttttaaagg caaatttcaa agctatttgt
     6721 tatgttaaaa atcaagaatc tacagcaact tggcttgcta aaaaagggta tgaagtggag
     6781 tataagtatt gataaaactt aaaaatttca cagaacttaa ttctcaagaa atagagctga
     6841 tttttaaatg gcgcaatcac cccgatatca atcaatttat gaaaacaaaa tatattgatt
     6901 ttgaagaaca tttaagattt ttaaaaaaat tacatcaaga ttctagcaaa aaatattttt
     6961 tagtttttca agatgaacag attatcggcg taattgattt tgtcaatatc acaactaaat
     7021 cttgcgaatt tggactttac gcaaaaccta atttaaaagg cgtaggacaa attttaatga
     7081 atgaaattat aaaatacgct tttgaaaact taaaagtaaa tactcttaaa gcttatgttt
     7141 tcaaagacaa tcgcaaagct ttaaaattat atcaacaaaa tcattttact atttatgatg
     7201 aagataaaga tttttaccat atttgcctaa agcaatctga ctgcaaagcc ttgcctagct
     7261 aattcttctt ttacatcttt aggggtatac ttagaaaaat gaaaaatata agcacccgct
     7321 aaagcatcag cacctaaatt taaagcctcg actccatcac ttggattgct aagtcctcca
     7381 ttgataataa gaggaatttt aagtttattt tgaaagatct ttaaaagttc taaatcataa
     7441 ccctttgccc ttccttcaaa atccacagaa gttaaaagaa gctctccagc tccttttttt
     7501 tcatattcta aagcaagttc taaaggactt ttttcaagta aatttcccct atcataaaca
     7561 caaaattgct ctccttttct tttaacatct atagaacaaa ctatacattg agaaccaaaa
     7621 cgattagccg ctttacttat aaaatccata tcttctaagg ccttagaatt gatagaaatt
     7681 ttatccgcac ctaaatttaa aatcttttgt atatcttcaa gggtttttat cccgccacct
     7741 atagttaaag gcataaaaca ttctttagca agatcttcta tactttcaaa atctatttct
     7801 ccactttttg aagcatctat atctaagata ataagctcat caacattgcg tgcattataa
     7861 attctcattg ttgaagttaa atgccctata gtgcgaaaat ctttaaattc tatactttta
     7921 acaagttgag aatttttaag caaaacacaa ggaattattc tagtttttaa catttaaagc
     7981 cttataaaat tttctaaaag ttttaagcct aaattttgac ttttttcagg atgaaactgc
     8041 gtcgcaaaaa tatgatcttt ttgcaaagat gcgacaaatt tatgcccata ttgtgcttta
     8101 gcacttacaa actcatcttt gcatttcaca taaaaagaat gcacaaaata aaaatcactc
     8161 ttattatcta tgccttgata caaaggatct tgttttaaaa tttcaagctc attccaaccc
     8221 atgtgtggga tttttaaatt taaatcctct tcaaatttga ctacttcacc ttctataaaa
     8281 ccaagtcctt cgcaaactcc accttcatag cccctttcta aaaaaagctg cattcctaaa
     8341 caaatgccta aaataggttt tttttgtact aaaacttgct cttttaaagc ttctataaaa
     8401 ccaagttctt ttaaattttt catcgcttct ttaaaagatc ccactccagg taaaagcaat
     8461 ttatctgctt tttgcaaatc ttttggattt ttagctatga aatttatagc tcctattttt
     8521 tcaaaagcct tagcaacaga gtttaaattt cccgccttgt aatcaatgag cgctatcatt
     8581 ttaaaacaca ctcgtctttt cttaccaaag aaccatcata atctcttata aatttaccat
     8641 tttcatcacg tttaaaaatt tttttattgg taaaagaatc tactattttt tgaaattctt
     8701 cctcgctaaa accactgaat tcaaggtatt ttttaatagc ctttttaggg ggcttgccat
     8761 cgtatttttg taccaaacgc accccttctt cacggctgat ataacctaaa cgaatatcca
     8821 aacaagcatt atccgttgct ctaccaaagc cgtatttgca gtattttaaa taatcatgca
     8881 catgattaga ataacaatct aaattttcaa aattttcata agtagtctca acagaatgat
     8941 ctagagttaa aaaaccatat tttttagaaa tttcaagaat ttttttataa tcccatttaa
     9001 aataataccc taaaaatagc cccgtaaccc ctactctttg aagttcttca tcacttggat
     9061 aagtatataa aaacaaatct ttttcagtga taccatttac cccaagcata tcagaagcac
     9121 gatttcctaa aagcccgcca aattcttcaa gccactctct gcctaaaata tttttatttt
     9181 tactactcgc aggaccgcca tactctatct gtggactttc tccccagatg atcaaaggca
     9241 ctccaaaatt taccgctatg cgtggaacag aagtaaaaat tcccaaatgg ttttgccact
     9301 cattatcccc tgttcttata aaagcttcac gggcaagttt ttgataaact tttggatcac
     9361 gcttgatatg gatcaaatcc acgccaagat gatttaaatt gtctaaattt ttgcgcccta
     9421 ttttcgtagg cacactaggc tcaaaacaca cacacaaagg attaagtcca agttcaagca
     9481 ttttaaccac ttgaaaagta gaatcttttc cgccacttac tccgataaca caatcataaa
     9541 caggatgttt tttgtatttt tttataagct caaaaaattc tttttctctt tcttgccaat
     9601 taatattttg atttttaact tcttgagaac gacaagcatc acaaacacct tcttcatcaa
     9661 aatgtaaatc aggcttagta tctggcatca cacatttttt acaaaatttc ataaat
//
LOCUS       DBBXRO010000061         9192 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.062, whole genome shotgun sequence.
ACCESSION   DBBXRO010000061 DBBXRO010000000
VERSION     DBBXRO010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9192
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.062"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..378
                     /locus_tag="ACJFEZ_001101"
     CDS             <1..378
                     /locus_tag="ACJFEZ_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HGG0917227.1"
                     /translation="KTIAIVGLSPDESKPSFMIGQFLQENHYKIYPIYPKCDEILGER
                     VYRSLDDIDEKIDLVLMFRKGEFASSLLPSIIRKGIQNFWLQLGICNNEVAKECENLK
                     INFIQDKCIMRELPLYQDRISKC"
     gene            372..1583
                     /gene="ilvA"
                     /locus_tag="ACJFEZ_001102"
     CDS             372..1583
                     /gene="ilvA"
                     /locus_tag="ACJFEZ_001102"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HGG0917228.1"
                     /translation="MLELNKIYQAKQKIADFVSKTPFIHSSFLSELCKSEVYLKNENL
                     QITGAYKIRGAYNKIANLDPEAKKAGVIAASAGNHAQGVAISAKKFGTKAIIAMPEST
                     PLLKVSATKSLGAEVILKGDNFDEAYAFATNYAKENGLSFIHPFEDELVMAGQGTLML
                     EMLDDVSDLDTIIAPVGGGGLISGIASAAKQINPNIKIIAVGAKGAPAMHDSFKAKEV
                     KNSKSVRTIADGIAVRDANPINLGIILECVDEFVQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKIDIKDSKKIGVVLSGGNIDVQMLNIIIEKGLFKAYRKMQINVTLI
                     DKPGALLNLTDSLKSANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEVRNIL
                     KDKGFDFYETF"
     gene            complement(1580..2305)
                     /gene="truA"
                     /locus_tag="ACJFEZ_001103"
     CDS             complement(1580..2305)
                     /gene="truA"
                     /locus_tag="ACJFEZ_001103"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HGG0917229.1"
                     /translation="MMKLKIIFSYDGSKFLGSATQPHKKSVQDALQDALSHLGIFSSV
                     LMASRTDKGVHASYAVACVECGEHFRDLNYLKKQINKFSHPFIHVKNLKIMPSNFEVR
                     YDVKSREYRYIFYHGVYNPFLASYVHFYPFIDVLKADLVLQNFVGIKDFKFFCKSGGD
                     NKTTIREIFLAKAYSYKDFTIFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQI
                     EAKKQYNHFLAPPCGLYLSRISY"
     gene            complement(2302..3327)
                     /locus_tag="ACJFEZ_001104"
     CDS             complement(2302..3327)
                     /locus_tag="ACJFEZ_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HGG0917230.1"
                     /translation="MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEI
                     NFADLLKLYGFMLPRILIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKF
                     FLKIAALVSALMLIIALVMIPIVFELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFI
                     EKQESDRYENIIMYHPKRNIEDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNFENGQT
                     LFIGNFDKLIVNTQFNDQNLQTKKFYEYWNDLNTNPKRAKEFVIYVTIALFPLASTLF
                     ALSFGIVTYRYEKGFIYFGMFGVIAVYFGLLSSFSQPPILACIGIFALSFIASIVCFK
                     KMILSRY"
     gene            complement(3324..4103)
                     /locus_tag="ACJFEZ_001105"
     CDS             complement(3324..4103)
                     /locus_tag="ACJFEZ_001105"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HGG0917231.1"
                     /translation="MENNPIAFLILAILGASLGSFCMSLTMRFCENKPLLSLRSYCFS
                     CYQKLKPLELIPIFSYIFLRFKCKTCHIKIPFSVFLAEVLGMIFAWIAYLLSQNIGEF
                     IHLLIFLFVLFALSCIDLKFQAVPQKLLWLIFFIAFSFAFNSNEFAYFFIFENFQNGF
                     MVQAFIFAGFLFLLKNFIAFLKNFRTKDIQENLGDADIIILASMAGVFGFKSAFIILF
                     LASLLSLPFFIHNKNTKLAFLPFINAAFVIYLIYLIVQELI"
     gene            complement(4093..4761)
                     /gene="uppS"
                     /locus_tag="ACJFEZ_001106"
     CDS             complement(4093..4761)
                     /gene="uppS"
                     /locus_tag="ACJFEZ_001106"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HGG0917232.1"
                     /translation="MNELKHLAVVMDGNRRWAKAKGFLAKLGYSQGVKTMQKLMEACV
                     EEGISNLSLFAFSTENWNRPQDEIEFIFELLDRCLDEALKEFEKNNVRLRAIGDLSRL
                     DTHLQEKIALVEEKTKHCDLLCVNLAISYGAKDEIVRSVKRLIEKGLEINEKNISDNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCAYAEIYFSETLFPSLTKREFKKIIKEFRKRER
                     TFGK"
     gene            complement(4764..5381)
                     /locus_tag="ACJFEZ_001107"
     CDS             complement(4764..5381)
                     /locus_tag="ACJFEZ_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917233.1"
                     /translation="MNMINSTLPIQMKVLAKSGYAHYTLLLNHRKIQTKSMIELEIGA
                     EYLAELYIEKGGAIAFKHLSKRPDFHPFEEGLSLMVEILEGRIDYKKYIISNLLECKD
                     KNKYHILKEMLFASFENIYHIPFIFKGKACLFQMKKRVKFLEIYLYFSVFGALKILID
                     EGGISIFTPFFKVQKFLNEHLQFNVLQDKNIQPLFVFKKLFDFKG"
     gene            complement(5378..6532)
                     /gene="coaBC"
                     /locus_tag="ACJFEZ_001108"
     CDS             complement(5378..6532)
                     /gene="coaBC"
                     /locus_tag="ACJFEZ_001108"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HGG0917234.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALADEVLCEENESWQNSNNHIAFSKDADLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGIGAL
                     AEVKDIFNISKRELFKQSFWCDKEVVISGGGTKEKIDNVRCVSNFSSGKMAKAIADAF
                     YFLGAKVTLLSSVYFDTPYSLKSFESSRELKELLEQNSNKDYLIMAAAVSDFIPEFKK
                     GKIKKNEHLKGLNLHLRLNEDLLKNLNFKGKKIGFKMEFDAQNALENAKKSLNDKKLD
                     MVCLNILEEENYFGSSKNEIHFITVNKIEKSGLKSKEDLAFDLVSWCEKI"
     gene            complement(6529..7818)
                     /gene="glmU"
                     /locus_tag="ACJFEZ_001109"
     CDS             complement(6529..7818)
                     /gene="glmU"
                     /locus_tag="ACJFEZ_001109"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HGG0917235.1"
                     /translation="MKTSILILAAGLGTRMKSEKPKVLQELCQKSMILHILEKAFAIS
                     EDVSVVLSHQKERVEKEILKHFPKTQILEQDLINFPGTAGALKEFRPKNEKVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVGEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAEHKMIKDYYYKKFQK"
     gene            7968..8702
                     /gene="fliP"
                     /locus_tag="ACJFEZ_001110"
     CDS             7968..8702
                     /gene="fliP"
                     /locus_tag="ACJFEZ_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807464.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HGG0917236.1"
                     /translation="MLTLLFISGFFSVIFAAEATIPTVNLSLSAPDTPNQLVTTLNIV
                     IVLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEQIGYEEAFARGVKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(8699..8923)
                     /locus_tag="ACJFEZ_001111"
     CDS             complement(8699..8923)
                     /locus_tag="ACJFEZ_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917237.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(8943..9176)
                     /locus_tag="ACJFEZ_001112"
     CDS             complement(8943..9176)
                     /locus_tag="ACJFEZ_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917238.1"
                     /translation="MKKVAFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCHQA"
BASE COUNT         3240 a         1625 c         1258 g         3069 t
ORIGIN      
        1 aaaaccattg ccatagtagg acttagcccc gatgaaagca agccttcttt tatgatagga
       61 caatttttac aagaaaatca ttataaaatt tatcctatat atcctaaatg tgatgaaatt
      121 ttaggagaac gcgtttatcg aagcttagat gatatcgatg aaaaaataga tcttgtttta
      181 atgtttcgca agggcgaatt tgcctcttca ttactcccaa gtattatccg taaaggaatt
      241 caaaattttt ggctgcagct tggaatttgc aacaatgaag ttgctaaaga atgcgaaaat
      301 ttaaagatta attttataca ggataaatgc attatgcgtg aattgccact ttatcaagat
      361 aggataagca aatgttagaa ctgaacaaaa tttatcaagc caaacaaaaa attgctgatt
      421 ttgtaagcaa aactcctttt atacactctt cttttttaag cgaactttgc aaaagtgaag
      481 tgtatttaaa aaatgaaaat ttgcaaatta caggagctta taaaattcgc ggtgcatata
      541 acaaaatagc taatttagac ccagaagcta aaaaagcagg agttatagct gctagtgctg
      601 gaaatcacgc tcaaggtgtt gccataagtg caaagaaatt tggcacaaaa gctataatcg
      661 cgatgccaga atccacccct ctcttaaaag tttctgctac caaaagcttg ggtgcagaag
      721 ttattttaaa aggtgataat tttgacgaag cttatgcttt tgcaacaaac tatgcgaaag
      781 aaaatggatt aagttttatt catccttttg aagatgaact tgtaatggca ggacaaggca
      841 cacttatgct tgaaatgctt gatgatgtaa gcgatcttga taccatcata gctcctgtag
      901 gcggtggtgg acttattagc ggtatagcaa gcgctgcaaa gcagattaat cccaatatca
      961 aaattattgc agtaggtgct aaaggagctc ctgcaatgca tgatagcttt aaagcaaaag
     1021 aggttaaaaa ctctaaaagt gtccgtacta tagcagatgg tattgctgtg cgcgatgcta
     1081 atcctattaa cctaggtatc atccttgaat gcgtggatga atttgttcaa gtagacgatg
     1141 aagaaatcgc taatgcggta ttgtttttgc ttgaaaaaca taaaattata gttgaaggcg
     1201 caggtgctgc aagcgtagcc gccctacttc atcaaaaaat agatataaaa gattctaaaa
     1261 aaatcggcgt tgttttaagt ggcggcaata tcgatgtgca aatgctaaat atcatcatag
     1321 aaaagggtct ttttaaagct tatcgtaaaa tgcaaatcaa tgttacttta atcgataaac
     1381 caggagccct acttaatctt acagatagct taaaatcagc caatgcaaac atagtcaaaa
     1441 ttgattatga tagattttca acaaagcttg attatggcga tgctatgatt tctattacct
     1501 tagaaactaa aggcaaagaa catcaagaag aagttagaaa tatcttaaaa gataaaggtt
     1561 ttgattttta cgaaactttc taataagaaa ttctactcag ataaagtcca caaggcgggg
     1621 ctaaaaaatg attgtattgt tttttagctt cgatttgctc ttttaactct tctatactca
     1681 tcttattttc taaaactttt aaaacactcg caaccattag tcttatttgc gcccttaaaa
     1741 aaccattagc cttaaaacga aaaatggtaa aatccttata agaatacgct ttagctaaaa
     1801 atatttctct gatagtcgtt ttattatctc ctccgctctt gcaaaagaat ttaaaatcct
     1861 taatacctac aaaattttgc aaaacaagat cagcctttaa aacatcaata aaaggataaa
     1921 aatgaacata agaagctaaa aaaggattat aaaccccgtg ataaaaaata tagcgatatt
     1981 ctctactttt tacatcgtat cttacttcaa aatttgaagg catgattttt aaatttttaa
     2041 catgtataaa aggatgagaa aatttattga tttgtttttt aagatagttt aaatccctaa
     2101 aatgctcccc gcattccacg caagcaacag catagcttgc atgcacccct ttatctgtgc
     2161 gagaagccat caaaacagag gaaaaaattc caagatgact taaggcatct tgcaaggcat
     2221 cttgaacgct ttttttgtga ggttgggtag ctgaacctaa aaatttcgat ccatcatagg
     2281 aaaaaataat ttttaatttc atcaataacg actcaaaatc atctttttaa aacaaacaat
     2341 agacgcaata aaacttaaag caaatattcc aatacaagct aaaataggag gctgtgaaaa
     2401 agaacttaaa agcccaaaat acacagcaat aaccccaaac atcccaaaat aaataaaacc
     2461 tttttcataa cgataagtta ctataccaaa agaaagggca aaaagcgtac ttgcgagtgg
     2521 aaataatgct atggttacat agattacaaa ttctttcgcg cgtttgggat ttgtatttaa
     2581 atcattccaa tactcataaa attttttagt ttgtaaattt tgatcattaa attgtgtatt
     2641 gactataagc ttatcaaaat ttccaataaa aagcgtttgg ccattttcaa aattatacat
     2701 tttgccatta gaaagcttaa aagcaaagct gtcttcattt ctttgtgctg ttgcttcttt
     2761 tgcgataatc aattgctctt tgtcttctat attgcgtttt ggatgataca tgatgatatt
     2821 ttcatatctg tcactttctt gcttctcaat aaaaatcatc cattcaagaa atctttgtcc
     2881 aaattcaccc gttttataat taaatttaac ctgagttttt ttaaaattaa caaaattatc
     2941 ttgcaattca aacactatag gtatcataac caaagctata attaacatca atgcacttac
     3001 taaagcggcg atttttaaaa aaaacttagc taaaatttta ggtgaaaatc ccaaggtaaa
     3061 taacactatg ctttcattct ctctagaaag cctaaaaaga gccaaagtaa gagcgataaa
     3121 aaaagctata ggcagggtaa aaataagaat tctaggcagc ataaagccgt ataatttaag
     3181 caaatctgca aaattaatct ctatactaga agtaagctta gcaagttgta taaaaaaaac
     3241 catagaaact atagtaaaaa gcacaaaaaa aatcgataaa tttgtactta aaaattgatt
     3301 taaaacatat cttaaagcaa gtttcatatt aattcctgaa caatcaaata tatcaaatat
     3361 atcacaaaag cagcattgat aaagggtaaa aatgctagtt ttgtattttt attatggata
     3421 aaaaagggta aagacaataa cgaagcaaga aaaagaatta taaaagcact cttaaaacca
     3481 aatacccctg ccatactagc aaggataata atatccgcat cacctaaatt ttcttgtatg
     3541 tcttttgttc taaaattttt taaaaatgct ataaaatttt taagtaaaaa caaaaaacca
     3601 gcaaaaataa aagcttgaac cataaatcca ttttgaaaat tttcaaatat aaaaaaatac
     3661 gcaaattcat tgctattaaa agcaaaagaa aatgcaataa aaaaaatcaa ccaaagcaat
     3721 ttttgaggca cagcttgaaa ttttaaatct atgcaagaga gtgcaaataa aacaaataga
     3781 aaaatcagta aatggataaa ttcccctata ttttggctta gcaaataagc aatccatgca
     3841 aaaatcatcc ccaaaacttc agccaaaaaa acagaaaaag gaattttaat atgacaagtt
     3901 ttgcacttaa aacgaagaaa aatataagaa aaaatgggta ttaattccaa aggcttaagt
     3961 ttttgatagc aagaaaagca ataagaacgt aagcttaata agggcttgtt ttcacaaaaa
     4021 cgcattgtta agctcataca aaatgaaccc aagctcgctc ctaaaatagc taaaatcaaa
     4081 aaagctatgg gattattttc caaaagttct ctctcttttt ctaaattctt ttatgatttt
     4141 tttaaattct ctttttgtaa gagaaggaaa taaggtttcg ctaaaataaa tttctgcata
     4201 agcacattgc caaagcaaga aattagacaa tcttttagca tttcccacac gaagcatcaa
     4261 atccacatcc aaaggcaaat ctaaattatc gcttatgttt ttttcattga tttccaagcc
     4321 tttttcaatc aagcgtttaa ccgaacgcac gatttcatct tttgctccat aactgatagc
     4381 taaattcaca caaagcaaat cacagtgctt ggttttttct tccacaaggg ctattttttc
     4441 ttgtaaatgt gtatcaagtc ttgataaatc cccgatagct cttaatctta cattgttttt
     4501 ttcaaattct tttaaggctt cgtccaaaca acgatccaaa agctcaaaaa taaattcaat
     4561 ctcatcttga ggtctgttcc aattttccgt gctaaaagca aaaaggctta aatttgaaat
     4621 tccctcctct acacaagctt ccatcagctt ttgcatggtt ttaacacctt gagaatatcc
     4681 aagcttagct aaaaaacctt ttgccttagc ccaacgccta ttgccatcca ttacaacagc
     4741 aagatgtttt aattcattca ttatcaccct ttaaaatcaa ataatttttt aaatacaaat
     4801 aaaggttgta tatttttatc ttgcaaaaca ttaaattgca agtgctcgtt taaaaatttt
     4861 tgcaccttaa aaaagggggt aaatatcgaa attccaccct catcgatcag aattttcaaa
     4921 gctccaaaaa cgctaaaata aagataaatt tctaaaaatt taaccctttt tttcatctga
     4981 aacaaacaag ccttaccctt aaagataaaa gggatatgat aaatattttc aaaacttgca
     5041 aaaagcattt cttttaaaat atgatattta tttttatctt tgcactctaa aagatttgaa
     5101 ataatatatt ttttataatc aatcctaccc tctaaaattt caaccatcaa agataatccc
     5161 tcttcaaagg gatgaaaatc aggcctttta gataaatgct taaatgcgat cgcgccgcct
     5221 ttttctatat aaagctcggc taaatactca gctccaattt ctaattctat catgcttttg
     5281 gtttgaattt ttctatgatt gagcaaaagt gtgtagtgtg catagcctga ttttgctaaa
     5341 actttcattt gtataggtag ggttgagttt atcatattca tattttttca caccaagaaa
     5401 ccaaatcaaa agccaaatct tccttgcttt ttaaaccgct tttttctatc ttatttactg
     5461 taataaaatg aatttcattc ttagaacttc caaaataatt ttcctcttct aagatattta
     5521 aacaaaccat atcaagtttt ttatcattaa gcgatttttt cgcattttct aaagcatttt
     5581 gagcgtcaaa ttccatctta aagcctattt ttttaccttt aaaatttaaa tttttaagca
     5641 aatcctcatt taatcttaaa tgcaaattta aaccctttaa atgctcattt tttttgattt
     5701 tgcctttttt aaattcaggt ataaagtcac ttacagctgc cgccatgatt aaataatctt
     5761 tgtttgaatt ttgctctagc aattctttta attctcgcga gctttcaaaa ctcttaagag
     5821 aataaggagt atcaaaataa accgaactca aaagcgttac tttagccccc aaaaaataaa
     5881 acgcatcagc gattgccttt gccatttttc cacttgaaaa attactcaca caacgcacat
     5941 tatcaatctt ttcttttgtc cccccaccac taatgacaac ttctttatca caccaaaatg
     6001 attgcttgaa aagctctctt ttgcttatat taaagatatc ttttacttca gccaaagctc
     6061 cgataccttc atctttacaa gctaaaactt tacaaatagg ctctataatc aaagctttat
     6121 tttctttaag tatctttaaa gaattttgcg tgctaaaatg atgaaacata tttgtatttg
     6181 ccgcaggagc tatgataaga ggtttatttg ctgcgattaa ggtttggata aaaagattat
     6241 ctgctatacc aaaagcaagt ttattgatag aattaacact tgcaggggca aacaaaacaa
     6301 gatctgcatc cttactaaaa gctatgtgat tgtttgagtt ttgccaactt tcattttcct
     6361 cgcataacac ttcatcagcc aaggcttcaa agctcatttt gctagcaaat tttaacaaac
     6421 cattagaaag caaaactttt accctaaaac cttctttttt aaacaaagaa ataagctcat
     6481 aagatttata aaaagctata ctgccactaa tggctaaaag tatggttttc atttttgaaa
     6541 tttcttataa taataatctt ttatcatttt atgctctgct ctattgataa acaaagcacc
     6601 tttttctaca ttgacactta ctgtgcttcc tgctgctatg atcacttcat cttcgatttt
     6661 tacaggtgcg ataaattgtg tatccgaacc tacaaaaaca ttttttccta taatggtttt
     6721 atgctttttt accccatcat aattacaagt gatagtccca cagcctatat tagttccact
     6781 atctatctca caatctccta aataactcaa atgtcctgct tttacggtat ttaactttgc
     6841 atttttgcat tctacaaaat ttcctatatg agtgtttttt aactcacaat ttggacgtaa
     6901 atgtgccaaa ggccctacat cgctattttc tacgatggaa ttttctatca cgcttgaact
     6961 tttaatgata gagtttataa tcttactttt gccctctatc cttacatttt catatacttc
     7021 acattcacct acaaattcaa catctgcacc tataaaagtg ctttgcggta aatgaaaaat
     7081 cacaccctgt tgcatccagt attttttaat tttttcttgc atgaaatttt cagctatact
     7141 gagttcaaat ttatcattaa tccccataaa ttcatcttca cctacaaaaa ctgctttaat
     7201 catcacatct ttttcttttg ctagttttac aatgtcggtt aaataatact cttttgccgc
     7261 attattgtta tcaatcaaag gtaaaagctc ttttaaaagt ctcgagtcaa tcacataaac
     7321 cccagcattg caagtattta tctctttttc ttgcgtattt gcatctttaa attcaacaat
     7381 tttttcaacg ctatcgtttt ttatcaccac cctaccataa cttttaggat ctcttgcttt
     7441 aaaaactgct agatttaatt ttgcattatt actcaacaaa gcttccaaac ttgtttgctc
     7501 aaccaaaggc atatccccgc aaagaattaa aactttttca tttttaggcc taaattcctt
     7561 taaagcgccc gcagtgcctg ggaaattgat caaatcttgt tctaaaattt gcgttttagg
     7621 aaaatgtttt aaaatttctt tttcaacgcg ttctttttga tgagataaaa ccacgctcac
     7681 atcttcactt atagcaaaag ctttctctaa gatatgtaaa atcatgcttt tttgacacag
     7741 ctcttgcaat acctttggtt tttcagattt cattcttgtt ccaagtcctg ctgctaaaat
     7801 caaaatggaa gttttcatta taaaaagcct tttgaggata attttatttt aattttaaca
     7861 ttttaaagtt aaatttttct ctaaattaaa acaagttaaa ctctttttta gtgagtaaaa
     7921 gttaaaatta agtttcattt tttaatcaag gtttattttt gaaaaaaatt ttaacattat
     7981 tgtttatcag cggttttttt agcgttattt tcgctgccga agcaacaatt cctacagtaa
     8041 atttaagcct aagtgctcct gatactccta atcaacttgt tacaacatta aacatagtca
     8101 tagtcttaac catacttgca ttagctccaa gtataatttt tgttatgact tcttttttac
     8161 gcttgattgt agttttttca ttcttgcgtc aagctatggg aactcaaagt atgccgccta
     8221 ataccatctt agtaaccttg gcattgattt taaccttttt tataatggag cctgtggcta
     8281 caaagtctta taatgaaggc atcaagcctt atttagcaga gcaaataggc tatgaagaag
     8341 cttttgcaag aggtgtgaaa ccttttaaag attttatgct taaaaatact cgcgaaaaag
     8401 atttagccct tttttatcgc atacgcaatc tacccaatcc caaaaccata gatgatgttc
     8461 cacttacggt tttagttcct gcttttatga tttcagaact taaaactgct tttgagatag
     8521 gctttttgat ttatttgcca tttttggtta tcgatatggt tgtgagttcg gttttgatgg
     8581 cgatggggat gatgatgctt cctcctgtta tgatttcatt gccttttaaa cttttgattt
     8641 ttgtattagt ggatggatgg aatttgctag tgcaaaggct tgtggaaagc tttgtaacct
     8701 aagatttata aaatcttaaa aacaaaattc caagaaaaag atacaaaagc aaaaataatt
     8761 ctaaagctaa aagtatatac aaaaacaagc ctttaacgca aaaaagagct ataaaaacaa
     8821 caaaaagaat tactaaggct gttcgcccta gaaagacttt ttctagggtc ttgatagaat
     8881 aaaaagtaaa atctaaaata agagtaaaaa taaattctag cattgtaaaa tacacccaaa
     8941 aactaagctt ggtggcatct tgcagccatc atgtcaattt ttgaattgta agtacttccg
     9001 cccggtgcag gtgcattcgc aaccccagca cctactaccc ccaatcttat tccataattt
     9061 aaaattaaag gtatagctct atcttcttga taagcatatt tgcaatactc cctagctgcg
     9121 tttagtacag tgcaagataa aaacaaaaat aacaaaaaaa atgcaacttt tttcattatc
     9181 ttaaatcctt tt
//
LOCUS       DBBXRO010000062         9184 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.063, whole genome shotgun sequence.
ACCESSION   DBBXRO010000062 DBBXRO010000000
VERSION     DBBXRO010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9184
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.063"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..185
                     /locus_tag="ACJFEZ_001113"
     CDS             <1..185
                     /locus_tag="ACJFEZ_001113"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917239.1"
                     /translation="MNQEEKFLECLTKATKGKKDLTNLEVLEFAFSIFCCLDNYIQNN
                     KARDKKILKLLKGDEK"
     gene            182..925
                     /locus_tag="ACJFEZ_001114"
     CDS             182..925
                     /locus_tag="ACJFEZ_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HGG0917240.1"
                     /translation="MNLELFRKDENKEISLTSLEIAELTGKEHRNVTRDIETYLEKVV
                     EGGVFKFEHTYQNPQNKQFYKCYRLPKREVLILVSGYSVELRAKIIDRLEYLENELKK
                     QSYKPLSLKESLQMQLELLERNEKLQIENLNLKNEAKENAPLIHFANRIKDTNDAILI
                     RDFAKILYEKNKIEIGEKRLFAFLRDNGFLMSDNKPYQKCIEQGLFKVSETTISTING
                     DRLVSTTKITGKGQIKIANLLLEGINHAV"
     gene            915..1769
                     /locus_tag="ACJFEZ_001115"
     CDS             915..1769
                     /locus_tag="ACJFEZ_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lambda-exonuclease family protein"
                     /protein_id="HGG0917241.1"
                     /translation="MQYKIIDLEQGSVEWLNFRKGKIGASMVASCVGIKGAFNSKEEA
                     RDIILGLKEVYQNKAMRRGNEYEPLIRARVEFLHSVSITPVVLQSLENEMFIASLDGI
                     DENGIIYEFKYSQDEYDFIKRNKKPSDKYYAQVQFQLYISGKEKCIFVAMNKEEEIVE
                     CEVLRDEAYQEWLVKSVKQFILDYIINQKSDYKDLDDNHAKELTIEIIRLENTIKPIK
                     EKLESLKKELIALANGEKARCLDITIYPQIRTTIDYKGFLEQQNINVPKEFYKESTSM
                     CLKIKKGA"
     gene            1771..2703
                     /locus_tag="ACJFEZ_001116"
     CDS             1771..2703
                     /locus_tag="ACJFEZ_001116"
                     /inference="COORDINATES: protein motif:HMM:NF015776.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HGG0917242.1"
                     /translation="MSSEITEIVDMGKKSTQIKEFEERNPLVISERLENELKLINERF
                     NSEDNAVMKVLKDNQTASFLKVKNLSEAGLSILNNDYYIVPMGNNVNIEPSYMGLVKV
                     AINEALKRGFEIIVKSDTVSNSDEVKIITENEIDNLSISKNPLDNSIKGAYALISIVK
                     NGNLLYRKAEFLNKEQIDTIKSKTFSKEGKVYKEFPEEMARKSAIRRAIKHINYFIKS
                     DVLDGVISIDNENYNFSNSNLKAIDDKKEQINNSLKELQELKAQYDAFIKENGISKKE
                     SEEFIIKYNIFTKEKFQSVLANKEKAIKTIKGEL"
     gene            2703..3398
                     /locus_tag="ACJFEZ_001117"
     CDS             2703..3398
                     /locus_tag="ACJFEZ_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917243.1"
                     /translation="MLPAFKASFEVANYSPSVEYLSEGGLYSGVFRKAFLYDKLASDG
                     SNNTFICFEFLTRKEQKLAIFNLFVAKNNDFSYINKNGEKENYLGFRQLNAIMKFFGI
                     DELAFNEKGNENVFGVQTEVIYLNSLVNKLLVLGFGTEEYLSKNGELANKIFLDRIFN
                     EKMQSMDEFQNNKEPLSIKSFKARHKSLNNDNNKSFIPKENQSYNPYGNEVKNNNNEK
                     YIEIGDDDGSLPF"
     gene            3379..3657
                     /locus_tag="ACJFEZ_001118"
     CDS             3379..3657
                     /locus_tag="ACJFEZ_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917244.1"
                     /translation="MEVCRSNYLEIVKIVPFSERRSCFCHFLRSNGIAIEKINYKNHI
                     SKKELRKAYKIYKSKPSGRNYFHEKKLIVKAFEDVEKFLRGKNETKFI"
     gene            3638..4390
                     /locus_tag="ACJFEZ_001119"
     CDS             3638..4390
                     /locus_tag="ACJFEZ_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HGG0917245.1"
                     /translation="MKPNLYNDHFQNFKRYNIPKAQLVIADIPYNLDNNAYASSPEWY
                     INGDNKNGKSKKANKAFFDTDNDFRVSEFMHFCSKMLIKEPKECGKSPCMIVFCSFEQ
                     QAMLIEVAKKYGFNHYINLVFRKQSSSQVLKANMKIVGNCEYALILYREKLPKFNNDG
                     KMIYNCMDWQKDEGIPKVHPTQKPVKLLERLITIFTDVGDIVIDPCAGSGSTLLAATN
                     LNRKAYGFEIKKDFFKSANEIMFKHIERSLFA"
     gene            4421..4714
                     /locus_tag="ACJFEZ_001120"
     CDS             4421..4714
                     /locus_tag="ACJFEZ_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917246.1"
                     /translation="MENFKAFKLISKRIIKTLLNDFPNQSILFSDDFNKDCKEYKIDF
                     SSCIHFLKECKVLKYDKENNGDFSGVLISPKAYLYFSKNDLNDIDDLIEFCMR"
     gene            4724..4957
                     /locus_tag="ACJFEZ_001121"
     CDS             4724..4957
                     /locus_tag="ACJFEZ_001121"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917247.1"
                     /translation="MQEETITYARGRLTELKDKKDELQRLIKDSKNLAIKNIQNDDLK
                     GARLYIDKLELYFDELLKTNTDLNLLCNKWGFK"
     gene            4954..5331
                     /locus_tag="ACJFEZ_001122"
     CDS             4954..5331
                     /locus_tag="ACJFEZ_001122"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917248.1"
                     /translation="MSENIELFESYTAKTLGELYSTFPIPSDFNFFDFIPKLEYEEFL
                     THQLNAYHTINYLKNNHFLDFESMDLESGKVKKAILKPKALELLKQDGLGVQLRKALS
                     TGRDELIRSIVNRALEMSLKFMF"
     gene            5429..5605
                     /locus_tag="ACJFEZ_001123"
     CDS             5429..5605
                     /locus_tag="ACJFEZ_001123"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917249.1"
                     /translation="MLELIFNTGRNIGLGIFVNGAFALQFSDVPQSQATYAIAEGILI
                     MFLSGLGEIKSKRS"
     gene            5752..6423
                     /locus_tag="ACJFEZ_001124"
     CDS             5752..6423
                     /locus_tag="ACJFEZ_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917250.1"
                     /translation="MQKNITSNLIFTNEQVAINYGLTTGLTIAKHLRMHNDEFIENTH
                     YFLVENSFKNKTIKWTLEGVYMLGFFIKSPKAKEYRKKVAKLLREQTQARFKTLSDEN
                     QRLNSLNHHQKIGYKSQLAQQKEKYENKIKALQYDLEHKKELSFKRKLSKEELLELRK
                     ILARDYDILCFKEWEFEFLAEKIALESSKMTTWDAVVKKLKQSLDYWQNYEEYEEKWR
                     KILRR"
     gene            6425..6958
                     /locus_tag="ACJFEZ_001125"
     CDS             6425..6958
                     /locus_tag="ACJFEZ_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HGG0917251.1"
                     /translation="MGILKRLDETIIIENDRKSEKELVEYCILEGISLNDANLENLNL
                     SGLDFDNVFINGTSFKNANLNDISSKNTSFIDCDFSGASFYFCNFLRTEFENCIFENV
                     SLRDCIGDMKNIFSIVVDTYVVTFTKTMMNLGCNTKTIKEWRNLSVDDLEDEEQKWLW
                     NYYKDTIFEIIDKRLGV"
     gene            6960..7199
                     /locus_tag="ACJFEZ_001126"
     CDS             6960..7199
                     /locus_tag="ACJFEZ_001126"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HGG0917252.1"
                     /translation="MIRLDIGDYYTRKEVANLLKVKEPIVHKYAKQGKFREFKQHRNC
                     SGLYPKQDIENFIKKYFGLVDLDQQSHRDNLPTTA"
     gene            complement(7126..8325)
                     /locus_tag="ACJFEZ_001127"
     CDS             complement(7126..8325)
                     /locus_tag="ACJFEZ_001127"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HGG0917253.1"
                     /translation="MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCP
                     KTLRYKRITLGEYPTLNLANARKQRDNLKVNLAENDSIREKYEITFKELALEKMDLKK
                     LELSEKTYKSYMSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTL
                     LNEIFRHGVIKEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGY
                     ISVKIAAMFSLLTAQRSFSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVY
                     MLKKYKEMSINTGYLFYSLRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLA
                     HENRNKHQMSSDIIELCLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIADLNQ
                     QVRNIFL"
     gene            complement(8524..8609)
                     /locus_tag="ACJFEZ_001128"
     tRNA            complement(8524..8609)
                     /locus_tag="ACJFEZ_001128"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8573..8575),aa:Leu,seq:gag)
     gene            complement(8666..9004)
                     /locus_tag="ACJFEZ_001129"
     CDS             complement(8666..9004)
                     /locus_tag="ACJFEZ_001129"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HGG0917254.1"
                     /translation="MKKIFFLFLALAATAFAAEANAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVFA"
BASE COUNT         3629 a         1112 c         1504 g         2939 t
ORIGIN      
        1 caatgaacca agaagaaaag tttttagaat gtttaacaaa agcaactaaa ggtaaaaaag
       61 atttgactaa tcttgaagta ttggaatttg ctttcagtat attttgttgc cttgataatt
      121 atattcaaaa taacaaggct agagataaaa aaattttaaa attattaaaa ggagatgaaa
      181 aatgaattta gagctgttta gaaaagatga aaacaaagaa ataagcttaa cttctttaga
      241 gatagcagag cttacaggaa aagaacacag aaatgttaca agagatatag aaacttactt
      301 agaaaaagtg gttgaagggg gtgtcttcaa atttgagcat acctaccaaa acccacaaaa
      361 taagcagttt tacaagtgtt accgcttacc aaaaagagaa gtattgattt tagtgagtgg
      421 atatagcgta gaactaagag caaagataat cgatagatta gaatacttag aaaatgagct
      481 taagaaacaa agttataaac cgctttcatt aaaagaaagt ttgcaaatgc aattagaact
      541 tttagagaga aatgaaaagc ttcaaattga aaatctaaat ttaaaaaatg aagccaaaga
      601 aaacgcacca cttattcact ttgcaaatcg tataaaagat actaatgatg ctattttaat
      661 aagagatttc gcaaaaatac tttatgaaaa aaataaaatt gaaatcggag aaaaaagact
      721 ttttgctttt ttaagggata atggcttttt aatgagtgat aataagcctt atcaaaaatg
      781 catagagcaa ggacttttca aagtaagtga aacaactatc agtacaataa atggagatag
      841 attagtaagc acaacgaaaa tcacaggcaa aggacaaatt aaaatcgcaa atttattatt
      901 agaaggaatt aatcatgcag tataaaataa ttgatttaga gcagggtagt gtggaatggt
      961 taaattttag aaaaggaaaa ataggtgcat cgatggtagc atcttgtgta ggtattaaag
     1021 gtgcttttaa ctctaaagaa gaggcaagag atatcatctt aggacttaaa gaagtctatc
     1081 aaaacaaagc tatgagaaga ggcaatgaat atgagccttt gattagagct agggttgaat
     1141 ttttacattc tgtgagtatc actcctgtag ttttgcaaag tctagaaaat gaaatgttta
     1201 tagcaagttt agatggaata gatgaaaatg gaattattta tgagtttaaa tactcgcaag
     1261 atgagtatga ttttatcaaa agaaataaaa agccaagtga taaatactac gctcaagtgc
     1321 aatttcaact ctatatcagt ggtaaagaaa aatgtatatt tgtagctatg aacaaagaag
     1381 aagagattgt agagtgcgaa gttttaagag atgaagctta tcaagaatgg ttggttaaaa
     1441 gcgtaaaaca atttattttg gattatataa tcaatcaaaa aagcgattat aaagatcttg
     1501 atgataatca cgcaaaagaa ttaacgattg aaattataag acttgaaaac acgattaaac
     1561 ctattaaaga aaagctagaa agtcttaaaa aagaactcat agccttagca aatggcgaga
     1621 aggcaagatg tttagatatc acaatatatc cacagattag aaccacaatt gattataagg
     1681 gatttttaga gcaacaaaat attaatgtgc ctaaagaatt ttataaggaa agtacttcaa
     1741 tgtgtttaaa aattaaaaaa ggagcataag atgagcagtg aaattacaga aatagtagac
     1801 atgggtaaaa aatcaacaca gattaaagag tttgaagaga gaaatccgct tgtaataagt
     1861 gaaagattgg aaaatgagct aaagttaatc aatgaaagat ttaattcaga agataatgcg
     1921 gttatgaaag ttttaaaaga taatcaaacc gcatcatttt taaaagttaa aaatcttagt
     1981 gaggctgggc ttagcattct aaataatgat tattatatag tccctatggg caataatgta
     2041 aatatagagc ctagctatat gggacttgta aaagttgcta ttaatgaagc tttaaagcgc
     2101 gggtttgaaa ttatcgttaa aagcgatacg gtttcaaata gtgatgaagt gaaaatcatc
     2161 acagagaatg agattgataa tctaagcatt agtaaaaatc cgcttgataa ttctataaaa
     2221 ggagcttatg ctctaatttc tatagtaaaa aatggtaatt tgctttatag aaaagctgag
     2281 ttcttaaata aagagcaaat agatacgatt aaaagcaaaa ctttttcaaa agaagggaaa
     2341 gtttataaag aatttcccga agaaatggca agaaaatcag ctattagaag agcaattaaa
     2401 catataaatt attttataaa gagtgatgtt ttagatgggg ttatcagcat tgataatgaa
     2461 aattataatt tttcaaattc aaacctaaag gctatagatg ataaaaaaga gcagattaat
     2521 aattctctta aagagttgca agagctaaaa gctcagtatg atgcctttat taaagaaaat
     2581 ggcatcagca agaaagagag tgaagaattt atcatcaaat ataatatttt tactaaagag
     2641 aaatttcaaa gtgttttagc aaacaaagaa aaagcaatta aaacaattaa gggagaatta
     2701 taatgttacc agcatttaag gcaagttttg aagtggcaaa ttattcgcca agcgtagagt
     2761 atttaagtga aggtgggctt tatagcggag ttttccgcaa agccttttta tatgataaat
     2821 tggcaagcga tggaagcaat aatactttta tttgttttga atttttaacc agaaaagagc
     2881 aaaaactagc tatttttaat ctttttgtag ctaaaaataa tgattttagc tatatcaata
     2941 aaaatggtga aaaagaaaat tatttaggtt ttaggcaatt aaatgccatt atgaaattct
     3001 tcggaattga tgagcttgct tttaacgaaa aagggaatga aaatgttttt ggggtgcaga
     3061 ctgaagttat ttatctaaat tctttagtta ataaactttt agttttaggt tttggaacag
     3121 aagaatattt aagtaaaaat ggagaacttg ctaacaaaat ctttcttgat agaattttta
     3181 atgaaaaaat gcaaagcatg gatgagtttc aaaataataa agagccttta tctataaaat
     3241 cttttaaagc aaggcataaa tctttaaata acgacaataa caaatcattt attccaaaag
     3301 aaaatcaaag ctataatcct tatggaaatg aagtaaaaaa caataacaat gaaaaatata
     3361 tcgaaatagg agatgatgat ggaagtttgc cgttctaatt atcttgaaat tgtaaaaatc
     3421 gttccattta gcgagaggag aagttgcttt tgtcattttt taagaagcaa tgggattgca
     3481 attgaaaaaa taaattataa aaatcacata agtaaaaaag aactcagaaa ggcttacaaa
     3541 atttacaaaa gtaagccaag cggaagaaat tactttcatg aaaaaaagct tattgtgaaa
     3601 gcttttgaag atgttgaaaa atttttaagg ggtaaaaatg aaaccaaatt tatataacga
     3661 ccattttcaa aattttaaaa gatataatat accaaaagca cagcttgtaa tagctgatat
     3721 tccttataat ttagacaaca atgcttatgc ttcaagtcct gaatggtata taaatggtga
     3781 taataaaaat ggaaaaagca aaaaagcaaa caaggcattt tttgatacag ataatgattt
     3841 tagagttagc gaatttatgc acttttgttc aaaaatgctt ataaaagaac ctaaagaatg
     3901 cggtaaaagt ccttgcatga ttgttttttg ctcttttgag caacaagcaa tgttaattga
     3961 agtagctaaa aaatatggct ttaatcatta tataaatttg gtttttagaa aacaaagctc
     4021 atctcaagtt ttaaaagcaa atatgaaaat agttggaaat tgtgaatatg ctttaatctt
     4081 atatcgtgaa aaacttccaa aatttaacaa tgatggcaag atgatttata actgcatgga
     4141 ttggcaaaaa gatgaaggta ttcctaaagt acatcccaca caaaagcctg ttaaattgct
     4201 agaaagatta atcactattt ttacagatgt aggtgatatt gttatagatc catgcgctgg
     4261 aagcggaagc actcttttag cagctacaaa tttaaaccgc aaagcttatg gctttgagat
     4321 taaaaaagac ttttttaaaa gtgctaatga aattatgttt aaacatatag aaagaagtct
     4381 atttgcttaa gtaaaatttt gataaaataa aggagaatta atggaaaact tcaaagcttt
     4441 taagcttatt tcaaaacgta ttataaaaac acttttaaat gattttccaa atcaaagcat
     4501 acttttttca gatgatttta acaaagattg taaagaatat aaaatagact ttagctcttg
     4561 tattcatttt ctaaaagaat gcaaagtttt aaaatacgat aaagaaaata atggcgattt
     4621 ttcaggagtt ttaatcagtc ctaaagctta tttatacttt tctaaaaatg atttaaatga
     4681 tattgatgat ttaatcgaat tttgtatgag ataaaggatt aaaatgcaag aagaaacaat
     4741 tacttacgca agaggtcgtt taactgagct taaagataaa aaagatgagc ttcaaagact
     4801 tatcaaagat agtaaaaatc tagcaattaa aaatatacaa aatgatgatt taaaaggcgc
     4861 tagactttat attgataaac tagagcttta ttttgatgaa cttttaaaga caaatacgga
     4921 tttaaatttg ctttgcaata aatggggatt taaatgagtg aaaatattga gctttttgaa
     4981 agctatacgg caaaaacttt gggagaactt tatagtacct ttcctattcc aagcgatttt
     5041 aacttttttg attttatccc aaaactagaa tatgaagagt ttttaacaca tcaattaaac
     5101 gcttatcata cgataaatta cctaaaaaat aatcattttt tggattttga gagtatggat
     5161 ttagaaagcg gaaaagttaa aaaagctatt ttaaaaccga aagccttaga gcttttaaaa
     5221 caagatggct taggagtgca acttagaaaa gctttaagta caggaagaga tgagcttata
     5281 agaagtattg taaatagggc tttagaaatg agccttaaat ttatgtttta aataaaggag
     5341 aaaaatgaca gcacaggaaa ttaaggaatt ttgtaaaaat atattgttaa attttattta
     5401 gtgtgctaaa cttttaaaaa gggaaaaaat gttagaactt atttttaaca caggaagaaa
     5461 tataggttta ggtatttttg taaatggagc ttttgctttg caatttagcg atgttccaca
     5521 aagtcaagcg acttatgcta tagctgaagg cattttaatt atgtttcttt cagggcttgg
     5581 cgaaattaaa tctaaaagga gttaaaatgg aaatcatttt aggaattggt gcggtaactt
     5641 tagttatagt ttcaatagct ttagtttata cattttataa agaaaaacac aaaacacaac
     5701 actaaataaa actacaatcc tactttttta taattagcaa aaggtaggat tatgcaaaaa
     5761 aatatcactt caaatttaat ttttacaaat gaacaagtcg ctattaatta tggcttaaca
     5821 acaggcttaa cgatagcaaa acatcttagg atgcataatg atgagtttat agaaaacaca
     5881 cattattttt tagtagaaaa ttcttttaaa aataagacaa tcaaatggac tttagaaggt
     5941 gtttatatgc taggcttttt tataaaaagt cctaaggcta aagaataccg caaaaaagta
     6001 gctaagcttt taagagagca aacacaagct agatttaaaa ccctaagcga tgaaaatcaa
     6061 agactaaatt ctttaaatca tcatcaaaaa atcggctaca aatcacaatt agcacaacaa
     6121 aaggaaaaat atgaaaacaa aatcaaagca ttacaatacg acttagaaca taaaaaggag
     6181 ttgagtttta aaagaaagct tagcaaggaa gaattactag agcttagaaa aatacttgct
     6241 cgtgattatg acattctttg ctttaaagag tgggagtttg agtttttagc tgaaaaaata
     6301 gcattagaaa gttcaaaaat gacaacttgg gatgctgttg ttaagaagct aaagcaaagt
     6361 cttgattatt ggcaaaatta tgaagaatac gaagaaaaat ggagaaaaat attaaggaga
     6421 tgagatggga attttaaaaa gacttgatga aactatcatt atcgaaaatg ataggaaaag
     6481 tgaaaaagaa ttagttgagt attgcatttt agaaggtatt tctttaaatg atgcaaactt
     6541 agaaaatcta aatttaagtg gcttagattt tgataatgtg tttataaacg gcactagctt
     6601 taaaaacgct aatttaaatg atatttcaag taagaataca tcttttatag attgcgattt
     6661 tagtggagca agtttctatt tttgtaattt tttaagaaca gaatttgaaa attgtatatt
     6721 tgaaaatgta agtcttaggg actgtatagg agatatgaaa aatatcttta gtattgtcgt
     6781 ggatacctat gttgtgactt ttacaaaaac tatgatgaat ttaggttgta atactaaaac
     6841 aataaaagaa tggcgtaatt taagcgttga tgatttagaa gatgaagaac agaaatggct
     6901 ttggaattat tacaaggata ctatttttga aattatagat aaaagattag gagtttaaaa
     6961 tgattagatt agatatcgga gattactaca caagaaaaga agttgcaaat cttttaaaag
     7021 taaaagagcc tatagttcac aaatacgcca aacaaggcaa atttagagag tttaaacaac
     7081 atagaaattg ttcgggattg tatcctaaac aagatattga aaattttata aaaaaatatt
     7141 tcggacttgt tgatttagat cagcaatctc atcgagataa tctccccacc actgcataag
     7201 gatagctttt tcctttaaat ttaaagcatg attatatgca gatttaatct tatttttttc
     7261 tacatgtgct aaacacaatt ctataatatc gctactcatt tggtgtttat ttctattttc
     7321 atgggctagg gtgctaaaca tagcacgaaa gccatgcggt gtaaaatcat cattagagta
     7381 gcccattctt ctaaacatgg atctaattgt gttatcgctt ataatttcac ttttacttct
     7441 taaactataa aataaatagc ccgtattaat actcatctct ttgtattttt taagcatata
     7501 tacacattga gaatttaaag gtatagtatg cgctcttttc atcttcatat cttcttgcgg
     7561 tatataccaa ataccatttt ccaaatcaat atcttcccat tttgcacttc ttatactaaa
     7621 gcttctttgt gcagttaata aagaaaacat tgctgcaatt tttacactaa tatatccctt
     7681 gtaatcaatt atattatcta ctaatgcttt aatttcttta gtttctaaca aggtggcatg
     7741 atttttactt gctttattta taagcaattc ttttctattt agatttgcca tggggttact
     7801 tttaatatat tcttttataa caccatgtct aaaaatttca tttaaaagag taaagaactt
     7861 atcggcacct tctcttatat tttcttttct aaatttttca aaacttttta aaatatcctt
     7921 gatttgcaat ttatctaata taatttctcc ataaattcca aaagcaaatc tttgtaaata
     7981 actcatatag cttttgtagg ttttttcgct taattcaagt tttttaagat ccattttttc
     8041 caatgctaat tctttaaatg ttatttcata cttttctctt atactgtcat tttcagctaa
     8101 atttactttt agattatctc tttgttttct agcgttagca agattgaggg tagggtattc
     8161 tcctagagtt attcttttgt atcttaaagt tttaggacat ttataattaa atataaaagt
     8221 tttcttaccg ctcggataaa tacaaagaag taggttgtca aaatcagcaa tatagtattt
     8281 tttgtcttta gcttttaagg cttttatttt ggtatcgttt agcactttta ttcctttggg
     8341 tcaataaagt caatagcaaa ttttagctag gtcaataaca aagtcaataa aaaatatctg
     8401 caagtataat aaattaaaat aaattaaaaa taatctaaag caattagata tctacgaaaa
     8461 gcctatttta tagatgatta aaaagaagta aaaaaaattg aaaaaagcta aaagaagtat
     8521 aaatggtgcg gttagcgaga tttgaactcg cacacgcgga gcgcaccacc ccctcaagat
     8581 ggcgtgtcta ccaattccac cataaccgca aattttagaa ttcaaagaaa taaaaagccc
     8641 tacttaaaat agagcttttt taagattaag caaaaactat aaaaggattt gcataaagtg
     8701 ctataagagc aattacaaga gcgtaaataa cttgcgcttc tatcattgcc aatgcaataa
     8761 acattgttgt cattaatttt ggcccaagtc ccgggtttct agctgttcct gctatagtag
     8821 ccgctgcagt attacccata ccgatagcac cacctagtgc agcaacgcca agtcctaaac
     8881 ctgccgctaa aacagaaaac gctttgatcc atacattgat agcttcttgt tcaacaggtg
     8941 cattagcttc agctgcgaaa gcagttgctg caagagctaa aaatagaaaa aagatttttt
     9001 tcatttttgt aacctttctt taaaatttat agagagtttt aatgttttaa ttttaaatca
     9061 gttcggcttg cgtatcccta cttaagattt aaaactaagt tgaaaatata tcaaaaatta
     9121 tctttaattt tattgaaatt tactaaattt cacattttta aagtattttt attactttca
     9181 ttaa
//
LOCUS       DBBXRO010000063         9075 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.064, whole genome shotgun sequence.
ACCESSION   DBBXRO010000063 DBBXRO010000000
VERSION     DBBXRO010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9075
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.064"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(13..531)
                     /locus_tag="ACJFEZ_001130"
     CDS             complement(13..531)
                     /locus_tag="ACJFEZ_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HGG0917255.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLKVLNQREAEVNATLAQIESLKEQNTKLLEEQQKILNSINE
                     KTEGRIKEIYSQMKDTAIADVLTQMDAEDASKIMLSLESRKISGVLSKMDPAKASELT
                     LLLKNMDNNKSN"
     gene            complement(524..952)
                     /locus_tag="ACJFEZ_001131"
     CDS             complement(524..952)
                     /locus_tag="ACJFEZ_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HGG0917256.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAREKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(949..2199)
                     /locus_tag="ACJFEZ_001132"
     CDS             complement(949..2199)
                     /locus_tag="ACJFEZ_001132"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HGG0917257.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDYVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHSRCINVIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKDAIGTTGKGIGPSYADKINRTGHRVGELLDPQRLHNALMK
                     DFEANKNYLEFLGIEIPDSDELLSDLKRFNEILTPFITDTTRMLWKALDEDKKVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYTTRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYMPSDLENVQPIYEEIDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(2221..2315)
                     /locus_tag="ACJFEZ_001133"
     tRNA            complement(2221..2315)
                     /locus_tag="ACJFEZ_001133"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2279..2281),aa:Sec,seq:tca)
     gene            2473..3684
                     /gene="yedE"
                     /locus_tag="ACJFEZ_001134"
     CDS             2473..3684
                     /gene="yedE"
                     /locus_tag="ACJFEZ_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HGG0917258.1"
                     /translation="MNSFKQKYLINFWDNSRAMITLGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMDLNGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWFFGVFMVLGIYLG
                     VKLCNTSFFKPKAKLQCANKENIPLLKQNSRAKFHFVLGSILFVAFLIWVFYLVLVNG
                     NISTQSKQSLLALALIFGFAFGFIISRGQICFTACFRDLFLFGRENAIKGALIGMIIA
                     SLIAFAFILHGHNSKLIELSPAVAIGAFLFGFGIVFAGGCECGWTYRACEGQSHFMIV
                     GIANIIGTMILALTYDFLPSAFKEGVKINLLNEFGNLGGFFINLALFILMFACVLFYK
                     KHFFQKLNQKG"
     gene            3688..3915
                     /gene="yedF"
                     /locus_tag="ACJFEZ_001135"
     CDS             3688..3915
                     /gene="yedF"
                     /locus_tag="ACJFEZ_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HGG0917259.1"
                     /translation="MKITYTLNLEGEACPYPAIATLDALPQLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKILEIDQNGPTLRFLIQKP"
     gene            complement(4057..5538)
                     /gene="putP"
                     /locus_tag="ACJFEZ_001136"
     CDS             complement(4057..5538)
                     /gene="putP"
                     /locus_tag="ACJFEZ_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HGG0917260.1"
                     /translation="METVQINTPIAIMFVAYAALMLYIGFYFYRQNKNTEDYFLGGRS
                     LGPVVSALSAGASDMSGWLLMGLPGALYASGLIESYIAIGLSIGALLNWSFVAKRLRI
                     YTSVIANSITIPDYFETRFDDDKHILRIVCAIVILIFFTFYVSSGLVGGAKLFEATFG
                     IRYEYALTTGTLIIVAYTFLGGYKAVCWTDLLQGLLMMGALIVVPAVMLYHLGGFGEA
                     MAVIEEIKPNALSMGEGIGALSIVSALAWGLGYFGQPHILVRFMSIRSTKDIPAATFV
                     GISWMVISLIGACFIGLLGIAYVHKFELTLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKRIFNKEASNKTVMNLGRIGVLLVALVAFVISTDK
                     ESSVLSIVAYAWAGFGASFGSVMLFSLFWSRMTRIGAILGMITGAVMVVLWKNYLAEL
                     FNFPIYEIVPGFVAASAVIIIASLLTQVRPGTKAAYERMLKEL"
     gene            complement(5553..9056)
                     /locus_tag="ACJFEZ_001137"
     CDS             complement(5553..9056)
                     /locus_tag="ACJFEZ_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HGG0917261.1"
                     /translation="MIQKSLALAEELQGKIEANISNSEKEFHAKMQKLLNNPENKVML
                     IELLDRSFRCKDKRASFELIEHTLNKYGIADFFSAFEKFLLFGFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHMRKRKDQDNITLNVNLIGEEVLGEAESKYRIQKY
                     EEALKSSYITYISIKITTIFSQINIIDFEYSKDEVVKRLDHLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVSKFDIKAGIVLQAYIPDSYEYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFVLEGDHYKYIN
                     VGIASHNIFEIAYAYTRISEAGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDNNWNVQKELFLKSLEGIKTLDNST
                     HRTQDRNKAPNIVSAYESGMFNNESDTDFILPQNRAWAKVIRAKYENLENYDVMPVIG
                     DLEFDKNTLNILEVKDKIKDRMIGKAYLAGENEIKKALKVAKNSNFKNTSFDEIHAIL
                     AKAANLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFTEFYPHSLKVLREQNKNTQ
                     FSPKGIGVTIAPWNFPVGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDAGI
                     SKDALIFLPSKGSDISKYLLVDEAVKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYEDEEFKKTLVDAAASMA
                     VGNPFEFKNKLGTLADKPSAKVEKALNELAPYEEWALKPQFLENNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIEIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGVKKSAIGFGRKVGIYNYITQFLDISTSEADENLLNNE
                     FVKTLEKIDLGTNEENKKALNNAILMAKSYAYHYRNEFSVSKDYVNIRGEDNLFSYTK
                     IKNLAFRVCENDNLQDILGVIIAANILNIPLSVSYEENDKISLVKELCKAINLNLEIT
                     NESKAQFVSRLKNFERIRYHGKVSVEDEIYQEAAKEAKIIIREKPLLNGRFELLFYHN
                     EKALSVSFHRYGNLGIRALNH"
BASE COUNT         2855 a         1742 c         1283 g         3195 t
ORIGIN      
        1 aaaattaaat ttttaattgc ttttattatt atccatattt tttagcaata aggtcaattc
       61 gctcgctttt gcaggatcca ttttagaaag cactcctgaa atttttctag actctaaaga
      121 tagcatgatt ttactcgcat cttcagcatc catttgggtt aaaacatcag ctattgcagt
      181 atctttcatt tgcgaataaa tttctttaat cctaccttct gttttttcat tgatagaatt
      241 taaaattttt tgctgctctt ctaaaagttt tgtattttgt tcttttaaac tttcaatctg
      301 tgctaaagtc gcatttactt cggcttctct ttgatttaag actttaagcc tttctttttg
      361 caaagcttca aaagaagctt tataagcttc taaagattgt cttgcttcat caaattccct
      421 agtttgcaat tcaatttgag cttttctagc ttcaaaatac tgctcacaat cttgttcagc
      481 tccaaaaact acacttgaaa taaaaactaa caatataaat tttttaatca tctttttctc
      541 ctttgaaaaa acgactgatt gcaatttcat ctaaaaattt ttcttcagcc ttggcaagtt
      601 ctttttgctt ttgtttaatt tcctcggctt ctaaaacctt cattttttca taatctaaat
      661 gtgctttttg atataaaaac tgataatgat tcatttcttt tttagaaagt tctactttct
      721 ccctagctct tgccaaagcc tcgcgtccta cttgcgccat acttaaattc gatcttaact
      781 ctgctataga tcctgatttt ggcaatacgc ctaaactttc acactcttgg cgtgaaagtt
      841 cataagcttt ttcatgttca agctgtcttt gtttggcttg attaagattt gattctgctt
      901 tatcaagttg ttgttttctt acctttacaa cagaattata tttacttttc ataagatgat
      961 agtatcatct ctttcagggc tagtagaaat atactttacc ttaacccctg caagctcttc
     1021 aagtcttgct atatattttt tagcattttc tggcaataaa tcataatctt ttataccaaa
     1081 aactttatcc caaccatcta tttcttcata aataggttga acattttcta aatcgcttgg
     1141 catatagtcg atttccatgc ccttatattc ataagcacga caaattttta tcttttcaaa
     1201 accatctaaa acatcaagct tcatcaaaga taaagcatca agaccattaa gtcttgctgt
     1261 atatcttaca gcaactgcat caaaccatcc acagcgtctt ttacgtcccg tgcttacgcc
     1321 aatttctttt ccaatttgcg caattttttc tccatcttca cccttatcct cagtaggaaa
     1381 agctccattt cccacacgcg ttgtataagc ttttacaata cctataatat ttcccgcttc
     1441 tttaggattt aacccgagtc ctgttaaagc gcctgctgaa atagtacttg agcttgtaac
     1501 ataaggataa gttccatgat caatatcaag catagagccc tgagcgcctt ctaaaagcac
     1561 ttttttatcc tcatccaaag ctttccaaag cattcttgta gtatcggtta taaacggagt
     1621 taaaatctca ttgaagcgtt ttaaatcact aagtaattca tctgaatcag gaatttcaat
     1681 ccctaaaaat tctaaataat ttttatttgc ttcaaaatct ttcattaaag cattgtgaag
     1741 tctttgagga tctaaaagct ctcctactct atgtccggta cggttaattt tatctgcata
     1801 agaaggtcct atacctttac ctgtcgtacc tatagcatct ttacctttga gtttttcttt
     1861 agcaatatct atcaaagaat ggtgctttaa atttaaatgt gctctatcgc taatatacaa
     1921 tctgcctttt aaattttcaa attgagccat ttcagcgatt aaaacttcag gagataccac
     1981 aactccattg ccaatcacat taatacacct tgaatgcaaa acaccacttg gcataagatg
     2041 aagtgcgtat cttacaccat ttacccaaat ggtatgtcct gcattatgcc cccctgcact
     2101 gcgacacaca tagtcataat tttcacataa tttatctact actttgcctt taccttcatc
     2161 accccattga attccaacaa taatatctgc tttactcatt attttcctta aattttacgg
     2221 cgagaagatg agagaatcga actccccaaa gaatagtcaa ctaccctttc atctgatttg
     2281 aagtcagtga cgatcaccag atacgctaat cttccaaagt tataattata gctattttta
     2341 aatgaaaaac aaaataaatt ttcaaaattt tatcaaagca tcactgattt ttgactttaa
     2401 tttaaaatta ggttataatc tcactctttt tttagcatca aggtttgatg attacggtat
     2461 ttaggaactt ctttgaattc tttcaaacaa aaatatttaa tcaatttttg ggataattcc
     2521 cgtgctatga taacacttgg aattttaagt gcagtatact ttggaatttt tggtggtgtt
     2581 tgggctgtta cgggagaaat gacgcgttgg ggtggagaat ttttagagct tttaggtatg
     2641 gatttgaatg gatattctta ttatcaaaag caaaatttaa atggtactcc tttaacgaga
     2701 accgatggaa tcatgcttat aggcatgttt ataggttgtt tagtagccgc acttttagcc
     2761 aacaaagtca aatttcgctt acccgctagc aatataagaa tctttcaagc tatagtaggt
     2821 ggaattcttt caggctatgg cgcaagactt gcctttgggt gtaacttggc aaactttttt
     2881 acaggcttac cttatttttc actgcatact tggttttttg gtgtttttat ggttttggga
     2941 atttatcttg gtgtaaaact ttgtaacact tcctttttta aacctaaagc aaaattacaa
     3001 tgtgcaaata aagaaaacat tcctttgctc aaacaaaact cgcgtgcgaa atttcatttt
     3061 gttttaggta gtattctttt tgtagcattt ttaatatggg tgttttatct tgtgcttgtt
     3121 aatggcaata taagcacaca aagcaaacaa agtcttttag ctttagcact catttttggc
     3181 tttgcgtttg gttttatcat ctccagagga caaatttgtt ttactgcttg ttttagagat
     3241 ttattcttat ttggtaggga aaatgctata aaaggcgctt taatcggtat gataatcgct
     3301 tctttgatcg cttttgcttt catcttacat ggacacaata gcaaactcat cgaactctct
     3361 cctgctgtgg ctattggggc atttttattt ggttttggta tagttttcgc agggggttgt
     3421 gaatgcggat ggacttatcg cgcttgcgag ggacaaagtc attttatgat agtgggtatt
     3481 gcaaacatca taggaacgat gattttggct ctaacttatg actttttacc tagcgctttc
     3541 aaagagggcg taaaaattaa cttgctcaat gaatttggaa atttgggtgg gtttttcata
     3601 aatctagctc tttttatttt aatgtttgct tgtgttttat tttataaaaa acacttcttt
     3661 caaaaactaa atcaaaaagg ataaaaaatg aaaattactt atactttaaa tttagaaggt
     3721 gaagcttgtc cttatcctgc tattgctacg ctagatgcct tgccgcaact taaaagcgga
     3781 gaaatcctag aagtgctttg cgattgtcca caaagtatca attctatacc tcaagatgca
     3841 aaaaatcgtg gttttaaaat tcttgaaatc gatcaaaatg gtcccacact tcggttctta
     3901 atccaaaagc cttaaatttg gctccaaatt taaagagttg ataaactttt gctctagttt
     3961 taattttaaa agctggggca aaaaatttca ttttgagata aaaaagtagg aaatttggag
     4021 gatatttaaa caaatatcct cattttctaa aaaatcttaa agttctttta acattctttc
     4081 atatgcagct ttagttcctg ggcgtacttg agtaagtaag cttgcaatga ttatcactgc
     4141 tgaagcagct acaaagcctg gaactatttc ataaataggg aaattaaaga gttctgctaa
     4201 ataatttttc caaagaacaa ccataacagc tcctgttatc atacctaaaa tcgctcctat
     4261 tcttgtcatt ctgctccaaa ataaagagaa aagcattaca gaaccaaaac ttgctccaaa
     4321 tcctgcccat gcataagcta caatacttaa aacacttgat tctttatctg ttgaaatcac
     4381 aaaagcaacc aatgctacca gtaaaacgcc tattcttccc aaattcatca cagttttatt
     4441 agatgcttct ttgttgaaaa ttcttttata aaaatcctct gctatggtag agcttgatac
     4501 aagaagttgt gaacttgcag tactcataat agcagccaaa atagcactga gtaaaatacc
     4561 tgctatccat ggattaaata aaagttgcga cattacaata aagatttttt caggatcttg
     4621 aagagtaagc tcaaatttat gcacataagc tatccctaaa agacctataa agcaagcacc
     4681 tatcaaggaa atcaccatcc aagaaattcc tacaaaggta gccgcaggaa tatccttagt
     4741 agagcgaata gacataaagc gcaccaaaat gtgaggttgt ccaaaatatc ccaagcccca
     4801 agcaagtgca gaaacaatgc ttaatgctcc tataccctca cccatggata aagcattagg
     4861 cttaatttct tctataacag ccatagcctc accaaaacca cctaaatgat aaagcataac
     4921 agcaggaaca acgatcaatg cacccatcat taaaagtcct tgaagcaaat ccgtccaaca
     4981 aactgcttta tatccgccta aaaaagtata agcaacgata ataagcgtcc cagtagtaag
     5041 cgcatattca tatcttatac caaaagttgc ttcaaataat tttgctccac ccacaagtcc
     5101 tgatgaaaca taaaaggtaa aaaatatcaa aatgacaatc gcacaaacta tacgcaaaat
     5161 atgcttatca tcatcaaatc ttgtttcgaa ataatcaggt attgtaatag aatttgcaat
     5221 cacacttgta taaattctaa gtctttttgc tacaaaactc caattcaata aagctccgat
     5281 gctaagtcct atagcaatat aactctctat aagtccactt gcatacaaag cccctggcaa
     5341 acccattaaa agccaaccgc tcatatcaga agcccctgcg cttagtgcag aaactacagg
     5401 acctaaagaa cgcccaccta ggaaataatc ctctgtattt ttattttgcc tataaaaata
     5461 aaaacctata taaagcatta aagcagcata tgccacaaac attatcgcta tgggggtatt
     5521 aatttgaact gtttccattt ttactccttg gtttaatgat ttaacgctct aatgcctaaa
     5581 tttccatagc gatggaaaga tacacttaaa gctttttcgt tgtgataaaa taaaagctca
     5641 aaacgaccat ttaataatgg tttttctctg ataataatct tagcttcttt tgccgcttct
     5701 tgataaattt catcttccac actcactttt ccatgatagc gaattctctc aaaattcttc
     5761 aatcttgaaa caaattgagc tttgctttca tttgtgattt caaggtttag atttatagct
     5821 ttgcaaagtt cttttactaa agaaatttta tcgttttctt catagctcac gctcaatggg
     5881 atatttaaga tattggctgc aatgataact cctaaaatat cttgcaaatt atcattctca
     5941 cacactctaa aagctaaatt tttaatctta gtataagaaa agagattatc ctcgccgcgt
     6001 atattgacat aatcttttga aacactgaat tcatttctgt aatgatacgc ataagatttt
     6061 gccatcaaaa tagcattgtt taaagctttt ttattttctt catttgtgcc aagatctatt
     6121 ttttctaaag ttttaacaaa ttcgttattg agcaaattct catcagcttc acttgtgctt
     6181 atatctaaaa actgggttat gtaattataa attcccactt ttctaccaaa acctatagca
     6241 gattttttca ccccaccaaa aggctgacga agtactatag ctcctgttgt aggtttattg
     6301 atatagatat ttcctgcttc tatatgagtg tgaaaatact cccattctct ttcatctaag
     6361 ctctcaaatc ctgcagtaag accatagcct gttgaattga ctatctctat agcttctttt
     6421 aaatcttttg ctttcattac acttaaaatc ggtacaaaaa gctcattcat atgagtgaaa
     6481 tcaccttttt tggtgccgta ttttatccct ggagtcatca aataaggatt gttttctaaa
     6541 aattgaggtt ttaaagccca ttcttcataa ggcgctagtt catttaaggc tttttctact
     6601 ttagcactag gcttatctgc taatgtgcct aatttatttt taaattcaaa aggatttcct
     6661 acagccatag aagcagctgc atctactaaa gtctttttaa attcttcatc ttcataaact
     6721 tcttcctcta aaacaagcaa agaagtagcc gagcattttt gaccgctgtt gctaaaagca
     6781 gaatggataa tatttttaat cgcgctgtca cgatctgcaa atttagaaac aatcgtagca
     6841 ttttttccac ccgtttcagc acttaaaagc aaggtaggat ttgctttaag catagcataa
     6901 gccgtatctt ctccacctgt aagaatagag aatttcactg cttcatcaac aagtaaatat
     6961 ttagaaatat cgcttccttt tgaaggtaag aaaattaaag catctttgct aattcctgca
     7021 tcccaaaaac acttacaaag catataacct gttagagttg aaagtgaaga aggtttgtaa
     7081 atcaccacat tacctgcggc taatggcgca gctatggtgc ccactgaaat ccctacagga
     7141 aaattccaag gagctatggt tactcctata cctttagggc taaattgagt atttttattt
     7201 tgctctctta aaacctttaa agaatgtgga taaaattcag taaaatcaat agcctcactt
     7261 acttcaggat caatttctaa gaaagttttt cctacttcaa gtgcagccaa acctatcaaa
     7321 tccccacgac gctctctcat caaatttgca gccttagcta aaatagcatg aatttcatca
     7381 aaacttgtat ttttaaaatt agaattttta gctactttaa gagctttttt gatttcattt
     7441 tcgcctgcta aataagcttt tcctatcatt ctatctttga ttttatcttt aacttctaaa
     7501 atatttaaag tatttttatc aaattccaaa tctccgatta caggcattac atcataattt
     7561 tctaaatttt catatttagc tcttatgact ttagcccatg ctctattttg tggcaaaata
     7621 aaatccgtat cgctttcgtt attaaacatt ccactttcat aagcacttac tatatttgga
     7681 gctttgtttc tatcttgggt gcggtgtgtg ctattatcaa gcgttttaat tccttctaaa
     7741 gattttaaga aaagttcttt ttgcacattc cagttattat ccccaacttt gagattaaaa
     7801 aaatatctca tgaaattatc ttcgcttgta ttttcatcaa ggcgtcttac aagataagca
     7861 atagcattat taaaatgcgc ttcatcacaa acaggcgcat aaagaattaa atcatgcatt
     7921 ttagacaatt cataagaaca ttgcaaactc ataccttcaa gcatttcaaa agtgaaagaa
     7981 tcaagagctc ctgcttcact gatgcgtgtg taagcataag cgatttcaaa gatattgtgg
     8041 cttgcgatac ccacattgat atatttataa tgatctccct ctaaaacaaa atcaagcatt
     8101 ttgttataat tgctatctgt gtctattttt ttataaaaag taggaagctc ccatcctctt
     8161 tgacttgcaa tcgtctcttc gctttccatg tttgcacctt ttacaaagcg aattttaatg
     8221 ggcttcattc cttttaaaac tctttctttt gaaaaggcaa aaagtttttt aaggtactca
     8281 taagaatcag gtatgtaagc ttgtaaaaca atacctgctt taatatcaaa tttagacaca
     8341 ctttccataa aggcagcaac ggttagttcc aaatctctaa attcttccat gtcaagattg
     8401 ataaatttac tcacaccctg ctttttttct tcttctaagg ctaaagcata aagatgatca
     8461 agtcttttaa ccacttcatc cttggagtat tcaaagtcaa taatattaat ttgtgaaaaa
     8521 atagtagtga ttttaatcga aatataagta atatagcttg attttaaagc ttcttcatat
     8581 ttttgaatgc ggtatttgct ttctgcttcg cctaaaacct cttcgccaat taaattcaca
     8641 tttaaagtga tattatcttg atcttttctt ttgcgcatat gaggttctaa aacactagga
     8701 tttgcatcca aaaccatagc tttagtatct tctcttaaat gttttacaaa aaatggcaca
     8761 cttaaattag gtgcgaattt accaaaattt aaaaagccaa agagtaagaa tttctcaaag
     8821 gcactaaaaa aatctgctat accatactta tttaaagtat gttcgataag ctcaaaactt
     8881 gctcttttat ctttacatct aaaagaacgg tcaagcaatt cgatcagcat gactttattt
     8941 tcaggattat taagaagctt ttgcatttta gcatggaatt ctttttcaga attcgaaatg
     9001 tttgcttcta tttttccttg taattcttca gctaaagcta aggacttttg tatcattttt
     9061 acatctccta aggat
//
LOCUS       DBBXRO010000064         8992 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.065, whole genome shotgun sequence.
ACCESSION   DBBXRO010000064 DBBXRO010000000
VERSION     DBBXRO010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8992
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.065"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            62..832
                     /locus_tag="ACJFEZ_001138"
     CDS             62..832
                     /locus_tag="ACJFEZ_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HGG0917262.1"
                     /translation="MFKVDLNSDLGESFGVYKMGMDEEILKFVSSANVACGFHAGDPC
                     VMDKTLNLAKQNNVCIGAHPSYPDLLGFGRRNMQVSFEEAKNYALYQLGALFAFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDDGIIFLGLSNSAMEEVAKKKGLK
                     YANEVFADRAYNDDGTLVSRKLEGAVITDEDLAIKRVIKIIKESKVTSINGKEVDLKA
                     DSICVHGDGIKALEFVKKIKENLTKEQIQIKALNDFIN"
     gene            854..2023
                     /locus_tag="ACJFEZ_001139"
     CDS             854..2023
                     /locus_tag="ACJFEZ_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HGG0917263.1"
                     /translation="MINKTALLGAAFLMATSAIGPGFLTQTATFTGSLLASFGFVILV
                     SIILDIGAQLNIWRIIGISGKRGTEVANMVLPNLGYFVAFLIALGGFFFNIGNIAGAG
                     LGLNIVLGISVENAAVISAIIAIGIFIFKKAGELMDKFIVLAGFVMIVLTAYVAFASK
                     PPIGEALFRTFIPTQIDVISIVTLVGGTVGGYIVFSGAHRLIDAKLYGKENLNYINKA
                     AVSGIIITGIMRVILFLAVLGVVSSGFILDKENPAGSVFHHALGDLGLKIFGVVLFLA
                     AISSVIGAAYTSVSFIRSFHPWIEKYNRFVVIFFIIVSTLVFYILGKSPASILIIVGT
                     INGWILPITLFIMIIAAHKKSVVGDYKHPKWMSAFGLLIVALMSYLSVLSMIKLM"
     gene            2025..2765
                     /gene="pxpB"
                     /locus_tag="ACJFEZ_001140"
     CDS             2025..2765
                     /gene="pxpB"
                     /locus_tag="ACJFEZ_001140"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HGG0917264.1"
                     /translation="MFSVHFSGSKAVLLRFKQEISPQINALVLSTEARIQKGINENEI
                     YGIDELVSAYSSLLIYFNPCVLSLNSLLDFLEKIKKDIKITDKKSNLCIEVPLCYDEE
                     FGLDLEFVCKYHNLSKEELINLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLASPR
                     TKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFNKEDEKNPTLLKAGMLLKFKA
                     ISKDEFYDIKEQVLKKAYQKEIYEYKSH"
     gene            2746..3711
                     /locus_tag="ACJFEZ_001141"
     CDS             2746..3711
                     /locus_tag="ACJFEZ_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HGG0917265.1"
                     /translation="MSIKVIEASINSTIQDLGRKNYAKLGIARSGVMDELSLRIANIL
                     LGNKQDEAGLELCLKGGKYEFLDESYFVLSGAEFEAKLNNKKIQTCKVYQAKKGDILE
                     LGLAKIGFRGYLCVAGGFKIKSFLNSKSSDVKMGVGVFNGRALQKDDVLELNNSFIPF
                     NLAKRECENPVFQFAKEPTIRVILGTNDDAFTQNGLNTFLNTSYKIGLKSDRMAIYAE
                     AKTTIEHKNSADIISDPAVFGSIQVPKNGLPIILMAGRQSTGGYTKIASVIENDLPLL
                     AQAKLGTNFKFENISMQNALELYKQREEKIKTLDKKINLDFENLI"
     gene            3720..4484
                     /locus_tag="ACJFEZ_001142"
     CDS             3720..4484
                     /locus_tag="ACJFEZ_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012856140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydro-lyase"
                     /protein_id="HGG0917266.1"
                     /translation="MNPKELREKIAKGEIKEQTSGMALGYAQANLVILPKEYAKDFQT
                     FCMLNPKPCPLLEIVHGKFTQKIAKNANIYTDIPKYFIYENGIKTKEAYDISEYYSDD
                     LIGFLLGCSFSFEEALLEKGLEIRHISNKCNVPMYKTNIACKSVGVFSGEMVVSMRPF
                     TPDNAKKAKEITANFPLVHGAPVQIGNAKEIGINNILKADFGDDPIIKEGEIPVFWAC
                     GVTPQNVIMKAKLPFVITHAPGHMFISDILNSSLKS"
     gene            complement(4481..5380)
                     /locus_tag="ACJFEZ_001143"
     CDS             complement(4481..5380)
                     /locus_tag="ACJFEZ_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HGG0917267.1"
                     /translation="MDRSKYLFILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLSFLKIPLRLEKNALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFVIAIFFQKDKKSTHKITKSEILGLFLGLISGLCLLNLGSMEELLGKFN
                     ALFLSCAFIWALMAVFTHKAKGTHPLAINFYINLMSLLMFSWVLFDLKSYEIFQFDFK
                     FWINLFVVAFLSTVVGTSIYYYGIHILGSVKANSFVLITPASALICSFFILDEVPTIL
                     TLIGCVLAIFAIYFINIYGKKKS"
     gene            complement(5514..6095)
                     /locus_tag="ACJFEZ_001144"
     CDS             complement(5514..6095)
                     /locus_tag="ACJFEZ_001144"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HGG0917268.1"
                     /translation="MKNILLLNGAKSFGHSGGKLNDTLHEVAKESLLNLGLKVDETHI
                     DKGYDIENEVAKILNADAIIYQMPGWWMGEPWIVKKYIDEVFTAGHGKFYANDGRSRE
                     DASKKYGSGGLVNNKKYMFSLTWNAPLEAFNDKEQFFEGVGVDGVYLHLHKANQFLGM
                     KPLPTFICNDVMKNPQVEKYIEDYKAHLQKVFS"
     gene            complement(6112..7302)
                     /locus_tag="ACJFEZ_001145"
     CDS             complement(6112..7302)
                     /locus_tag="ACJFEZ_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917269.1"
                     /translation="MQQSSITINNTYQIKILITLCLGVFGLISMELGVMGIIPLISEK
                     FGVSVSDAGWSVSIFALIVMCCAPIAPMLCANFNPKKLMLFCLAIFSLSSLASMFVND
                     FWLHLILRAIPAFFHPIYLALAFSTAANLADDKSKVPHIVAKIFMAISAGLVLGVPLS
                     SYFGGNFSFEMAMAFYVVINSLAFFITLFFMPEFKKTSRIKVGKQLLSLRYALLWISM
                     LAVFCISTGYLGFYSYYSEFLFSVSKMSFTNISLALFIYGFASIIGNNIAGKTLVNHS
                     NQTLIFASIAMILIYALIFVNAAQFAIMLTLSLILGIVNGAMNNAMHYIITFPFPRAK
                     DFTNGLFISVSNISISVGATLCGLVISIKETKYIAISSIIMVGLGLILVLVRMRLEDK
                     KLKI"
     gene            7425..7877
                     /locus_tag="ACJFEZ_001146"
     CDS             7425..7877
                     /locus_tag="ACJFEZ_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HGG0917270.1"
                     /translation="MIELIGDVNLEKYMGTWLEMARKPAFFQKSCVQSKAEYQLEYEG
                     STPVVNIKNICVKKDGEVSQVQGKAKVKSPRALSVKFSIFMNLFNKTNYEILFIDTNY
                     EVAVVGSPDKEYLWILSRKIIDKKEIDKLLDIAKQKGFDISDIVFDKY"
     gene            complement(7878..8957)
                     /locus_tag="ACJFEZ_001147"
     CDS             complement(7878..8957)
                     /locus_tag="ACJFEZ_001147"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HGG0917271.1"
                     /translation="MDSKIFLENGRIQSKGYAMLSKDAKFTPFEFTRHAVGDNDILIK
                     ILYAGICHSDIHTARSEWGEAVYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVN
                     SCGECEACKKSQEQFCEKGQTIYTYNSCDIFHDNENTYGGYSNNIVVSEKFAVCVPKD
                     APMEKVAPLLCAGITTYSPLKFSNIKAGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFA
                     RNENKKANALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYDPSAYMDLLKFGGEMAI
                     VGLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHKIYPETELITSK
                     DIDKAYENLTSGKAKFRYVIDMRDE"
BASE COUNT         3175 a         1492 c         1498 g         2827 t
ORIGIN      
        1 agtctggtta aaaaaaagat acaataaaag ttaagattat attaaacaaa taaggtaaaa
       61 aatgtttaaa gtagatttaa atagtgatct aggagaaagc tttggcgtct ataaaatggg
      121 tatggatgaa gaaattttaa aatttgttag ctctgcaaat gtcgcttgtg gctttcatgc
      181 gggcgatcct tgtgtgatgg ataaaacctt aaacttagcc aagcaaaata atgtttgtat
      241 aggagcacat ccctcttacc ctgatctttt gggttttgga agacgcaata tgcaagtaag
      301 ctttgaagaa gctaaaaatt atgctttata tcaattggga gctttatttg cttttgccaa
      361 agccaaaggt atgaaaatac aacattttaa agcccatggt gcactttata atatggctgc
      421 aatagatgaa aatctagctc tagcactttg tgaagcagtg gctagttttg atgatggtat
      481 tatttttcta gggcttagta attctgctat ggaagaagtt gcaaagaaaa agggattaaa
      541 atacgcaaac gaagtttttg cagatcgcgc ttataatgat gatggtactt tggtttcaag
      601 aaaacttgaa ggtgcagtta tcacagatga agatttagcg ataaaacgcg tgataaaaat
      661 aataaaagaa agcaaagtta caagcataaa tggcaaagaa gtggatttaa aagctgatag
      721 tatttgcgtg catggagatg gtataaaagc attagaattt gttaaaaaaa tcaaagaaaa
      781 tttaacaaaa gaacaaattc aaataaaagc cttaaatgat tttataaatt aaaaactata
      841 agaaaggata aaaatgataa acaaaaccgc tcttttgggc gctgcttttt tgatggcaac
      901 ctctgctatt ggccctggat ttttaaccca aacagcaaca tttacaggaa gcttattggc
      961 tagttttggt tttgtaatac ttgtttctat tattttggat ataggagcac agcttaatat
     1021 ttggcgcatt atagggataa gtggaaaaag aggaactgaa gtagccaata tggttttacc
     1081 caatttgggc tattttgtag cttttttaat tgcactaggt ggctttttct tcaatatagg
     1141 aaacatagca ggagctgggc ttggattaaa tatagtatta ggtattagcg tagaaaatgc
     1201 agcagttatt agcgctatta tcgctattgg tatttttatc tttaaaaaag ctggggaatt
     1261 gatggataaa ttcatcgttt tagcaggttt tgtgatgatt gtacttactg cttatgtagc
     1321 ctttgcttca aaacctccca ttggcgaagc tctttttaga acctttatac ctacacaaat
     1381 tgatgttatt tctatagtaa ccttagtagg cggaacagtg ggtggatata tagtattttc
     1441 aggcgcgcac agacttatag atgcaaagct ttatggaaaa gaaaatttaa actatattaa
     1501 taaagctgca gtaagcggaa tcatcatcac aggaatcatg cgtgtgattt tgtttttagc
     1561 agttttagga gtagttagtt ctggttttat actggataaa gaaaatcctg ctggttcagt
     1621 atttcatcat gctttagggg atttgggctt aaaaatcttt ggcgtagtac tatttttagc
     1681 tgctatttca tcagttatcg gggctgctta cacttctgta tcttttataa gatcctttca
     1741 cccttggatt gaaaaatata accgctttgt ggtaattttt ttcattattg tttcaacttt
     1801 agttttttat atacttggaa aatctcctgc aagtatatta atcatcgttg ggacgatcaa
     1861 tggttggatt ttgcctatta ccctatttat aatgataatt gcagcgcata aaaaaagcgt
     1921 agttggagac tataaacatc ctaaatggat gagtgctttt ggacttttga tcgtggcttt
     1981 gatgtcttat ttatctgtac tttctatgat aaagttaatg taaaatgttt agcgtacatt
     2041 ttagtggaag caaagcggtg cttttgcgct ttaaacaaga aatttcacct caaattaatg
     2101 ctttggtttt aagtacagaa gctagaattc aaaaaggcat aaatgaaaat gaaatctatg
     2161 gcatagatga acttgtaagt gcttattcta gcttgcttat ttattttaat ccttgcgtat
     2221 tatccttaaa ttctttactt gattttttgg aaaaaatcaa aaaggatatt aaaataacgg
     2281 ataaaaaatc caatctctgt atcgaagttc cactttgtta tgatgaagaa tttgggcttg
     2341 atttagaatt tgtatgcaaa tatcataatc tttccaagga agaattgata aatcttcaca
     2401 caaaacccta ttatcttgtt tttatgctag gatttatggc aggttttcct tatcttggag
     2461 gacttgatga aagacttttt accccaagac tcgcaagccc tagaaccaaa attgaggcag
     2521 gaagtgtagg tattgccgat aaacaaacag gagtttatcc gatttcaagt ccaggcggtt
     2581 ggcaaatcat tgctagaact cctttggaat tttttaacaa agaggatgag aaaaatccta
     2641 cacttttaaa agcgggaatg cttttaaaat ttaaggccat ttcaaaagat gaattttacg
     2701 atattaaaga acaagtttta aaaaaggctt atcaaaagga aatttatgag tataaaagtc
     2761 attgaagctt ctataaattc caccatacaa gatcttgggc gtaaaaatta tgctaaatta
     2821 ggcatagcaa gaagcggtgt gatggatgaa ctttctttaa ggattgcaaa tatcttactt
     2881 ggaaataaac aagatgaagc aggacttgag ctttgtttaa agggtggaaa atacgaattt
     2941 ttagatgaaa gctattttgt attaagcggg gcagaatttg aagctaaatt aaataataaa
     3001 aaaattcaaa cttgcaaagt ttatcaagca aaaaagggtg atattttaga acttggttta
     3061 gcaaaaatag gttttcgagg ctatctatgc gtagcgggtg gatttaagat aaaaagcttt
     3121 ttaaattcaa aatcaagcga tgtaaaaatg ggtgttgggg tatttaatgg aagagctttg
     3181 caaaaggatg atgtattaga actaaataac agctttatcc cctttaatct agcaaaaaga
     3241 gaatgcgaaa atcctgtttt tcaatttgct aaagaaccca ctatccgtgt tattttaggc
     3301 acaaatgatg atgcttttac gcaaaatggc ttaaatacct ttttaaatac tagttataaa
     3361 ataggcttaa aaagcgatag aatggcaatt tatgcagaag ctaaaactac gatagaacat
     3421 aaaaattcag ccgatattat ttcagatcct gcggtttttg gaagtattca agtgccaaaa
     3481 aatggcctac ctatcatctt aatggcagga agacaaagca ctggaggtta tacaaaaata
     3541 gcctctgtta tagaaaatga cttacctttg cttgcgcaag cgaaattagg aacaaatttt
     3601 aaatttgaaa acattagcat gcaaaatgct ttagaactct ataaacaaag ggaagaaaaa
     3661 attaagactt tggataaaaa aatcaatctt gattttgaaa atttgattta aggataaaaa
     3721 tgaatccaaa agaactaaga gaaaaaatcg caaaaggtga gataaaggaa caaacttcag
     3781 gcatggcctt aggctacgca caagcaaatt tggtgatttt acccaaagaa tacgctaaag
     3841 actttcaaac cttttgcatg ctcaatccaa aaccctgccc acttttagaa atagtacatg
     3901 gtaaatttac tcaaaaaatt gccaaaaatg caaatattta caccgatatt ccaaaatatt
     3961 ttatctatga aaatgggata aaaactaaag aagcttacga tataagcgag tattatagcg
     4021 atgatttgat aggtttttta ctaggttgta gcttttcttt cgaagaagct ttacttgaaa
     4081 aaggcttaga aataagacat attagcaata aatgcaatgt gccaatgtat aaaaccaata
     4141 ttgcttgcaa aagtgtagga gtttttagcg gtgaaatggt tgtttccatg cgtcccttta
     4201 ctcctgataa tgccaaaaaa gctaaagaaa tcactgccaa ttttcctttg gttcacggag
     4261 ctcctgtgca aattggcaat gctaaggaaa ttggtataaa taatatttta aaagctgatt
     4321 ttggtgatga tcctattata aaagaaggcg aaattcctgt attttgggct tgcggagtaa
     4381 ctccacaaaa tgtgataatg aaagcaaaat tgccttttgt gattacccat gcgccagggc
     4441 atatgtttat aagcgatatt ttaaattcat ctttaaaatc ttaggatttt ttcttgccat
     4501 aaatattgat aaaatatata gcaaaaatcg ctaaaacaca gcctattaaa gtaagtatag
     4561 taggcacttc atctaagata aaaaagctac aaatcaaagc acttgcagga gtgattaaaa
     4621 caaaagaatt tgcttttaca cttcctaaaa tatgaattcc ataataatat atacttgtac
     4681 ctaccaccgt agataaaaaa gccaccacaa aaagattgat ccaaaattta aaatcaaatt
     4741 gaaagatctc ataactttta agatcaaaca acacccatga aaacatcaat aatgacataa
     4801 gattgatata aaaattgatc gccaaaggat gagttccttt tgctttatga gtaaaaacag
     4861 ccattaaagc ccatataaaa gcacagctta aaaacaaagc attaaactta cccaaaagct
     4921 cttccataga gcctaaattt agcaaacaaa gccctgaaat caaacccaaa aataagccta
     4981 gaatttcact ctttgtgatc ttgtgagttg attttttatc tttttgaaag aatatcgcta
     5041 tcacaaatat caaataagaa aatataggga tcatagtggt tactaaaacc cctcctttac
     5101 ctgctaaacc atgctttata gcgataaaaa atacaaaggc ataaagtcca tttaaaactc
     5161 ctgctatcaa gacccatttt aaagcatttt tttcaagtct aagaggaatt tttaaaaagc
     5221 ttaaaacaaa aaatgaaccc aatacaacaa agaaaaaacg ccagaaggta ataatagaag
     5281 tatctgtata gttcgccaaa atcttagatg tcggccatga agaaccccat aaaaacatag
     5341 caataacaag caagataaat aaatattttg aacgatccat ttatactacc tttgaaataa
     5401 ataagaatgt ttttatgata tcaaaatgct aggttaaata ataacccagc atgaattaat
     5461 gtttatttaa aatcatctat gaaatggtgc aaattttaca tttgctattt agcttagcta
     5521 aacacttttt gcaaatgcgc tttataatcc tcgatgtatt tttctacttg tggatttttc
     5581 atcacatcat tgcaaataaa agtcggcaaa ggcttcatac ctaaaaactg atttgcttta
     5641 tgcaaatgca aatacactcc atccacgccc acaccttcaa aaaactgctc tttatcatta
     5701 aaagcttcaa gcggtgcatt ccaagtaagg ctaaacatat attttttatt atttacaagt
     5761 ccgccactgc catatttttt acttgcatct tctctacttc taccatcatt tgcataaaat
     5821 tttccatgtc ctgcggtaaa aacctcatca atgtattttt tcactatcca aggctcaccc
     5881 atccaccatc ctggcatttg atagatgatc gcatcggcat taagtatctt tgcaacttca
     5941 ttttctatat cataaccctt atcgatatgc gtttcatcga cctttaatcc taaatttaaa
     6001 aggctttctt ttgctacttc atgcaaagta tcattgagct tgccgcctga atgtccgaaa
     6061 ctttttgctc catttaataa aagtatattt ttcatctttt ctcctttata attaaatttt
     6121 taatttttta tcttctaatc tcattctaac caataccaaa ataagcccta agcccaccat
     6181 gatgatagaa cttatcgcaa tgtatttagt ttcttttata gaaatgacta agccacaaag
     6241 agtagcacct acgctgatag aaatatttga aacacttata aaaagcccat tggtaaaatc
     6301 ttttgcccta gggaaaggaa aagtgatgat ataatgcatt gcattattca tagctccatt
     6361 tacaattccc aaaatcaaac ttaatgtaag catgattgca aattgcgctg catttacaaa
     6421 aatcaaagca tatatcaaaa tcattgctat agaagcaaat ataagcgttt gatttgagtg
     6481 attgactaaa gtttttcctg cgatattatt accaataata cttgcaaaac cataaataaa
     6541 aagtgctaaa ctgatatttg taaagctcat tttactcacg ctaaataaaa attcagaata
     6601 ataagaataa aatcctaaat atccagtcga aatacaaaaa acagcaagca tagaaatcca
     6661 caaaagtgca tatcttagac ttaaaagctg ttttcctacc tttatcctac ttgtcttttt
     6721 aaattcaggc ataaaaaaca aagtgataaa aaacgctaaa gaattgatca ccacataaaa
     6781 agccatcgcc atttcaaagc taaaattccc accaaaataa ctactaaggg gcacaccaag
     6841 aaccaaacct gcgctaatag ccataaaaat ctttgcgact atatggggta ctttactttt
     6901 atcatctgct aaatttgcgg ctgtgctaaa agcaagtgca agataaatag gatgaaaaaa
     6961 agcagggata gctcttaaga tcaaatgaag ccaaaaatca tttacaaaca tgcttgccaa
     7021 agagctaaga gaaaaaatag ccaagcaaaa taacataagc tttttaggat taaaatttgc
     7081 acaaagcata ggtgctatag gcgcacagca cattacaata agtgcaaata tactcacact
     7141 ccaccccgca tcactaacac tcacgccaaa tttctccgat ataagcggta tgatccccat
     7201 caccccaagc tccatactga taagcccaaa cacacctaga caaagcgtga ttaagatctt
     7261 gatttgataa gtattgttta tagttatact tgattgttgc attaaaaaac ctttttcgaa
     7321 aaattaaact cgcaatttta atttatgcaa gttataatgt caatacataa agtgatgatt
     7381 taatcagata taaagaatat ttcaaaaaac aaaaggagga tatcatgata gaacttatag
     7441 gagatgttaa tttagaaaaa tatatgggaa cttggcttga aatggctaga aaacctgcat
     7501 tttttcaaaa atcttgcgtt cagtctaaag ctgaatatca actagaatac gaaggctcta
     7561 cccctgttgt aaatataaaa aatatctgtg ttaaaaaaga tggagaggtt tcgcaagtac
     7621 aaggcaaagc caaagtaaaa tccccaagag ctttatcggt gaaatttagc atttttatga
     7681 atttatttaa taaaacaaat tatgaaattc tctttataga cacaaactat gaagtcgctg
     7741 tcgttggaag tcctgataaa gagtatcttt ggattttatc tagaaaaatc atcgataaaa
     7801 aagagataga taaactttta gatatcgcta agcaaaaagg ttttgacatt agcgatatag
     7861 tttttgataa gtattaatta ctcatctctc atatcgatca catagcggaa ttttgctttt
     7921 cctgaagtga gattttcata agctttgtcg atatcttttg aagtgatgag ttcggtttca
     7981 gggtaaattt tatgctttaa agaaaaatca agcatttctt gagtttctgc gattccgccg
     8041 attagtgaac catagacttt tttacccgct ttatgcacaa aggttatcac gctgatactt
     8101 ggagcaactt cgtgaggtgg caaacccact atcgccattt caccgccaaa tttaagcaaa
     8161 tccatataag cactaggatc ataaggagtt gggatggtag aaatgataag atcaaagcgt
     8221 tcttttacag catttttatc tgtgcttgta taaaaagaac tcacgcccat agccaaagca
     8281 ttggcttttt tgttttcatt tctagcaaaa acacttactt ttgcacccat tttcacagca
     8341 tatttaaccg ccatcatacc aagtccgcca aatcccgcta ccgctacgct tgagccagct
     8401 ttaatgtttg aaaatttaag cggagaataa gtggtaattc ctgcgcaaag caaaggcgcg
     8461 actttttcca tcggtgcatc ttttggcaca caaacagcaa atttttcact tacgactatg
     8521 ttgtttgagt agcctccata ggtgttttca ttatcatgaa aaatatcgca gctattgtaa
     8581 gtatagatgg tttgtccttt ttcgcaaaat tgctcttggg attttttgca tgcttcgcat
     8641 tctccgcatg aatttaccat acagccaacc cctgcataat cccctacttt aaatttgctc
     8701 acatttttac ccactgcgat cacttctcct gctatctcat gccctggcac acaaggatac
     8761 acagcttctc cccactcgct tcttgcagtg tggatgtcgc tatgacaaat tcctgcgtat
     8821 aaaattttaa tcaaaatatc attatcaccc acagcgtggc gtgtgaattc aaagggtgtg
     8881 aatttcgcat ctttgctaag catagcatag cccttgcttt gaatgcgacc attctctaaa
     8941 aagattttag agtccatttt ctctccttat tttttgattt ttgaaattat aa
//
LOCUS       DBBXRO010000065         8951 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.066, whole genome shotgun sequence.
ACCESSION   DBBXRO010000065 DBBXRO010000000
VERSION     DBBXRO010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8951
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.066"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            40..1334
                     /locus_tag="ACJFEZ_001148"
                     /pseudo
     CDS             40..1334
                     /locus_tag="ACJFEZ_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790444.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
     gene            1345..2175
                     /locus_tag="ACJFEZ_001149"
     CDS             1345..2175
                     /locus_tag="ACJFEZ_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917272.1"
                     /translation="MSYENFIGKQEKFTENINEKQVQKIVATLQSKQLKNGDALPYLW
                     QWCFFNEALTPDKLGRDGHPKLGLDKNSFFPSFGEVNRMWAGGRFNFIAPLIIGEDAT
                     KITTIKKIQEKQGKSGKLTFVTLEHCYYQKEQLKIEEEQDIVYKQPAPPKLTSDVVAM
                     NADYSEKMQPDSTLLFRYSALTFNGHKIHYDFPYATQVEGYHSLVIHGPLLATYMINC
                     FVKNHPDKQIINYSYRGMHALCVPDSFAVESKIIDNNTAEVWINKNGFVAHSGTIHFK
                     "
     gene            2188..3360
                     /locus_tag="ACJFEZ_001150"
     CDS             2188..3360
                     /locus_tag="ACJFEZ_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA transferase family protein"
                     /protein_id="HGG0917273.1"
                     /translation="MLPLEGKLVLSIEQAIAAPFCTRQLADLGARVIKIERPEVGDLA
                     RGYDKRVDGIASHFVWVNRSKESLAIDLKDPDGLEFIKTILPKVDIFVQNLAFGASKR
                     LGLDYENLKKYNPKIIVCDISGYGEGGNYGHKKAYDLLIQSESGLVSITGTQDECVKV
                     PISIADISAGMYAYSGILQALLYLEKTGKGSRVEISMLECMAEWMNYPLYYTYKNATP
                     PERKGAFHASITPYGPYKAKDGVVMFGLQNPREWESFCKIVLQDESLIEHEDFKNNTL
                     RTKNASKVKEIIEDAFKNLSAKEVVDRLDEAKIANGNVNELNQVWEHPQLKARNRWRE
                     VDSEVGKIPALLPPATNNNYEARMDKIPALGEHTESILKEFGFSDKINLFKEKKII"
     gene            3370..4203
                     /locus_tag="ACJFEZ_001151"
     CDS             3370..4203
                     /locus_tag="ACJFEZ_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HGG0917274.1"
                     /translation="MKAKSFLFVPSIFPERFTKALQSGASQIIIDLEDSVEVAKKEVG
                     RKNIVDFSSQCAKNNDKFLIRINETKSKEFQKDLSLISTIKESNGIIGVVLPKAQSYE
                     DIDMLSQFELPILPIIESALGVENLDDIARHPSVLALSFGSLDMTLDLNLQEGEGKNF
                     ILNSIRTQIVLKSTKYNLLSPINGVYPDIKNIDGLKEDLIFAKSMGFGGSLCIHPNQV
                     APINEVFSPSAKQIAWAKEILSLRQNSNDIIFNYNGMMVDLPVIKKAEQILLDSNSNL
                     S"
     gene            4446..6509
                     /locus_tag="ACJFEZ_001152"
     CDS             4446..6509
                     /locus_tag="ACJFEZ_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HGG0917275.1"
                     /translation="MNAKKLKLSILCFCLMGLGEIKAEEQYQLDDVVVSASGFEQDLV
                     DAPASISVITKEELSKKPIKDIGEAISDIPGVDVTMNKTGTYDFSIRGFGSSYTLVLI
                     DGKRQSVANGFYDNGFGGSESGYLPPASMIERIEVIRGPASTLYGSDAVGGVINIITK
                     KNPNKTEANIEFSTLLQQHSSKYGNAGGFNAYVATPLIEDTLSISARIKYYDKAASDL
                     KWPTPVWSNGTQRPENYQIASHSPGYFTSLGFGSRLNWTVDDSNNVYLDVERYINEIS
                     VNSTSSSAIKSERQLFKDNVVLNHDGNYEFGTTNSYLQYGSTKDKDLHSQIWVGEGKV
                     VLPWNLDKYGNLVSTFGTRIDYETLKNDQESAGSEIRGKNLDQTTVALYGEGEYFISD
                     DLIFTTGLRYIYSDLFDSEVTPRVYLVYHLNDNVAFKGGVAMGYKTPAAKQLTNGYYN
                     YSNNGASFGNPDLKPEESTNYELGVDFRIFDFAHYSITGFITDFKNQISSEELTGMYN
                     GIDCANGVTCERSINLGKTQTRGIELAFNTKPYKGFSVNSSYTFMDNRYKDGQTNWFG
                     GDRIENLPRHIAMLKLNYEQGKFSSYVKARARLDTIARSKGGGSGTLPWQKYKPFYIV
                     DLGVNYKIDKQSSLSFTVQNLFDKDFFDPQVTRWDGANPGGYANRYQDYTEGRSFWLS
                     YKYDF"
     gene            6585..7178
                     /locus_tag="ACJFEZ_001153"
     CDS             6585..7178
                     /locus_tag="ACJFEZ_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HGG0917276.1"
                     /translation="MIFKNLKELPFCESNYIKPKRFSYESNGKFCTWDFIESKDSVSI
                     LLYHKELKSFIFVRQFRIPLWYHQKQDKNYHKDENMGYTIELCSGLVDKDLPLEQIAK
                     EECIEELGYAPKEFEKVGDFYTGFGSGVSKQSFYFAIVDENDKICDGGGVDDEQIEAV
                     FVKINEYEEFSKKIIHTPLLDFAYLWFLKEKKELCLK"
     gene            complement(7199..8293)
                     /locus_tag="ACJFEZ_001154"
     CDS             complement(7199..8293)
                     /locus_tag="ACJFEZ_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0917277.1"
                     /translation="MFGSKINHTELQDIKNENQNLTQQLEKIKAENLELKDKISLLEQ
                     EALESKLKTDLLNVLLGGVLKNITIVQSDMLENVNKAEIISNYSKTSLAEMDELNHIA
                     NSINASLGDITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISINSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFAKSGQE
                     LADHTSCRLGKWVASTGKERFGDSKSFIKINEPHQKVHENMNSAIRIANTEDVSLSNT
                     QDAIIKKCENAENASLHLFDVFKEMLNEAN"
     gene            complement(8305..8520)
                     /locus_tag="ACJFEZ_001155"
     CDS             complement(8305..8520)
                     /locus_tag="ACJFEZ_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HGG0917278.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFERHNELDDQIKDAEEGRNLLS
                     DIEISNLKKEKLHIKDQLNQYLANYKK"
     gene            complement(8717..8911)
                     /gene="rpmB"
                     /locus_tag="ACJFEZ_001156"
     CDS             complement(8717..8911)
                     /gene="rpmB"
                     /locus_tag="ACJFEZ_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HGG0917279.1"
                     /translation="MARICQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
BASE COUNT         3017 a         1221 c         1629 g         3084 t
ORIGIN      
        1 aaaattatct taaaattact caagataagg agctaaatga tggatactat taatattatt
       61 attttatttt ccctcataat atcaattgct ttgggctatg ttcttaaagc aaatatcgga
      121 gtcttcgcga tactttcagc ctttattggg gcataccttt acggtataac accagaaaag
      181 gtgattaatc tttggaatgg aagtttaagt ttatttttta tacttctttc tattacttat
      241 ttttatggtt ttgcgattgc aaatggtacg ctaaacaatc tcgcgttaaa agctgtgtat
      301 tctgttagga atagaccttg gagtattcct attgcacttt atattacagt tatggtattt
      361 gtaggaattg gaccaggaca tttgcaggct ttgcttttat gagtcctttg gttctttata
      421 ttgctagcaa aatcaaaatg aataagattt tagcagctat tattatttat tctggttcct
      481 gtgcaggtgg atttaatccc tttacccttg gtggcagagt aacttttgat cttatcgaaa
      541 aacttggtta ttcagcagaa gcttctgcaa taatgcaatt aaatttaggt aaaaatatgt
      601 ttattgcaca tactttgatt tttataatcg gatatttttt gctaaaaggt tataaggtga
      661 aaattacttc gcaaattaca aaaccaaaaa gactcaatgc tgcacaatgg aagacgattt
      721 ttattgtgtg ttttgttttt gcggttatta tgatcccatc tttttttctt gctttaaatc
      781 ctcatgatga aacactaaaa aaagtaactt ccatttttaa ccctgttttt gtttcatttc
      841 ttggaatcgt tttggcagta atatttggaa ttggtagtga aaaagaagca tttaagaatg
      901 tgccttggga tttgattttc atgattggat cactttctat gcttattgag ctcagtaaaa
      961 caacaggcat aatggaaaat atcacaacat ttatgagtgc gcacggttca agtagcagta
     1021 attggcttta ttatttgctt ggaattttat cttcttgtat gagtgcgttt gcctcaagca
     1081 tgggggtggt tatgccaaca tttttctcta tcgtaccatc aatcaaagca cttgagccat
     1141 cacttgcatt ttctataatc gcagtatttg caacatttac tggatattca agtttttcaa
     1201 caggcggagc cttggttttg gctggtgcac aagatgaaag tgaaaaacgc tatcttttta
     1261 taagattgat aatattgcct ttaattttgg tagtatttgg ttttgtatta ttatttttag
     1321 gtattttaaa ttaaggagaa aaaaatgagt tatgaaaatt ttattggaaa acaagaaaaa
     1381 tttacagaaa acatcaatga aaaacaggtg caaaaaattg ttgcaacgct acaatctaag
     1441 caattaaaaa atggcgatgc ccttccatat ctttggcaat ggtgcttttt taatgaagca
     1501 ctaactccag ataaattagg cagagatggc catcctaaac taggactaga taaaaatagc
     1561 ttttttccaa gctttggtga agtcaatcgt atgtgggcag gaggtagatt taactttatt
     1621 gctcctttga ttattggaga agatgcaaca aaaataacca caataaaaaa gattcaagaa
     1681 aaacaaggaa aaagtggaaa acttactttt gttaccttag agcactgcta ttatcaaaaa
     1741 gagcagttaa aaatcgagga agaacaggat attgtttata aacaaccagc acctccaaag
     1801 cttacgagcg atgtagttgc tatgaatgca gattattctg aaaaaatgca acctgattcc
     1861 acgcttttgt ttcgctattc tgctttaacc tttaatggcc ataagatcca ctatgatttt
     1921 ccttatgcaa cgcaagttga gggttatcat agtttagtta tacatggtcc tttattggca
     1981 acttatatga ttaattgctt tgtaaaaaat catcccgata aacaaattat taattatagt
     2041 tatagaggta tgcatgcact ttgtgttcct gatagttttg ctgtggagtc aaaaattatt
     2101 gacaacaata ctgctgaagt atggataaat aaaaatggat ttgtggcaca ttctggcact
     2161 attcatttta aataaaaagg agaagagatg ttacctttag aaggaaaact agttttaagt
     2221 atagaacaag caatagcagc acctttttgt acaaggcaat tggcagattt gggagctaga
     2281 gttattaaaa tcgaaagacc tgaagtggga gatttagcaa gaggatatga taaaagagta
     2341 gatggcatag ctagtcattt tgtatgggta aatcgtagca aagaaagttt ggctattgat
     2401 ttaaaagatc ctgatgggct tgaatttatc aagacgattt taccaaaagt agatattttt
     2461 gtacaaaatt tagcatttgg agcatctaaa agattgggat tagattatga aaatctaaaa
     2521 aaatataacc caaagattat agtttgcgat atttctggat atggcgaagg tggaaattat
     2581 gggcataaaa aggcttatga tcttttaata caatcagaaa gcggcttagt ttctataacg
     2641 ggtacgcaag atgaatgtgt aaaagttcca atcagtatcg cagatatttc cgcaggaatg
     2701 tatgcttata gcggtatttt acaggcatta ttatacttag aaaaaacggg aaagggttct
     2761 agggtagaaa tttccatgct agaatgtatg gctgaatgga tgaattatcc tctttattac
     2821 acctataaaa atgcaactcc tccagagaga aagggtgcat ttcatgcaag cattactcca
     2881 tatggtcctt ataaggcaaa agatggagtt gtaatgtttg gcttgcaaaa tccaagagag
     2941 tgggaaagtt tttgtaaaat tgtattgcaa gatgaatcat tgatcgagca tgaagatttt
     3001 aaaaataata ccttaagaac caaaaatgca tcaaaagtaa aagaaataat cgaagatgct
     3061 ttcaaaaacc ttagtgcaaa agaagttgta gatcgtcttg atgaagcaaa aattgcaaat
     3121 ggaaatgtta acgaacttaa tcaagtatgg gagcatccac aactaaaagc tagaaatcgt
     3181 tggagggaag ttgatagtga agttggaaaa attcctgcac ttttgccacc tgcgacaaat
     3241 aacaattatg aagctagaat ggataaaatc ccagctcttg gagaacatac agaatcaatt
     3301 cttaaagaat ttggcttttc tgataagata aatttattca aagaaaaaaa gattatctaa
     3361 ggattttata tgaaagccaa aagtttttta tttgttccat caatttttcc agaaagattt
     3421 acaaaagctt tgcaaagtgg tgctagtcaa attattattg atttagagga ttctgttgaa
     3481 gtggcaaaaa aagaagttgg aagaaaaaat attgtagatt tttcaagcca atgtgctaaa
     3541 aataatgata aatttcttat aagaatcaat gaaacaaaaa gcaaggaatt tcaaaaagat
     3601 ttgtctttaa tttcaactat taaagaatct aatggcatta ttggcgttgt attgccaaaa
     3661 gcgcaaagtt atgaggatat agatatgctt agccaatttg aacttcctat attacctatt
     3721 attgaaagtg cgttaggagt ggaaaattta gatgatattg ctaggcatcc gagtgtttta
     3781 gcattaagtt ttggaagttt agatatgact ttggatttaa atttgcaaga gggtgagggt
     3841 aagaatttta ttttaaatag cattagaaca cagattgttc taaaaagcac aaaatacaat
     3901 cttttatcgc caataaatgg agtttatcct gatataaaaa atattgatgg attaaaagag
     3961 gatttaatat ttgcaaaatc aatggggttt ggggggtctt tgtgcattca tccaaaccaa
     4021 gttgcaccaa ttaatgaagt ttttagccca tcggccaagc aaattgcatg ggcaaaagaa
     4081 attttatcac ttaggcaaaa tagcaatgat attattttta actacaatgg aatgatggtg
     4141 gatctacccg ttattaagaa agcagaacaa attctgttag atagcaattc aaatctctca
     4201 tagggagatt tgaataaatt atttgtgtat aaatataata ctttttttaa gatattttat
     4261 cctcttactt gtctttaaaa taacttataa tatttctaaa aagctatgtt ttgtgcaaat
     4321 tttaagcttt aaaattgttt ttataattat tatcaaagtt aagtaaattt aaagtcattt
     4381 ttatctatac ttcaaaattg attttaacta tcataatagc ctaatacaag aaaggaaaaa
     4441 ggataatgaa tgctaaaaag cttaaattaa gcattttatg tttttgtttg atgggattag
     4501 gtgaaatcaa agcagaagaa caataccaac ttgatgatgt ggtagtgagt gcaagtggtt
     4561 ttgaacaaga cttagtggat gcgcctgcta gtatttctgt tattactaaa gaagagctta
     4621 gtaaaaagcc tattaaggat ataggagaag caatttcgga tatcccgggt gttgatgtta
     4681 ctatgaataa aaccggtact tatgatttta gcatacgagg ttttggaagt tcttacactt
     4741 tggttttgat tgatggaaag cgtcaaagcg ttgctaatgg tttttatgat aatggttttg
     4801 gcggtagcga atcaggatat ttaccacccg catctatgat agagcgtatc gaggtgatac
     4861 gcggacctgc ttctacactt tatggtagcg atgcagtagg tggggtaata aatatcatta
     4921 ctaaaaaaaa tcccaataaa accgaagcga atatagaatt tagcaccctt ttacagcagc
     4981 attctagtaa atatggaaat gcgggtggtt ttaatgctta tgtggctaca cctttgattg
     5041 aagatacact ttcaatttct gctaggatta agtattatga taaggcagct tctgatttaa
     5101 aatggcctac gccagtttgg agtaatggta ctcaaagacc tgaaaattat caaatcgcaa
     5161 gtcatagtcc tggatatttt acgagtttag gttttggatc aagactgaat tggactgtag
     5221 atgatagcaa taatgtttat ttagatgttg agcgttatat caatgaaatt tcagtaaatt
     5281 ccacaagtag tagtgctatt aaaagcgaaa ggcaattgtt taaagacaat gtcgttttaa
     5341 atcatgatgg aaattatgaa tttggaacta caaattcata cttacagtat ggtagtacta
     5401 aagataaaga tctgcatagt caaatttggg taggagaagg aaaggttgtc ttgccttgga
     5461 atttggataa atatggaaat ttagtaagta cctttggaac aagaatagac tatgagacac
     5521 tcaaaaacga tcaagaaagt gcaggtagcg aaataagggg taaaaatctt gatcaaacta
     5581 cggttgcact ttatggcgag ggtgaatatt ttatcagtga tgatttgatt tttactacag
     5641 gcttgcgtta tatttatagt gatttgtttg attctgaagt aactcctaga gtatatcttg
     5701 tttatcattt aaatgataat gttgctttta aaggaggtgt agctatgggt tataaaactc
     5761 cagcagcaaa acaactcacc aatggttatt ataattatag caataatggt gcttcttttg
     5821 gaaatcctga tttaaaacct gaagaaagta caaattatga gctaggagtt gattttagaa
     5881 tatttgattt tgctcattat tctattacag gatttattac tgattttaaa aatcaaatca
     5941 gtagcgaaga gttaacagga atgtacaatg gtattgattg tgccaatggt gttacatgcg
     6001 aacgttctat caatcttggt aaaacacaaa ctaggggtat agaattggct ttcaatacaa
     6061 aaccttataa gggttttagt gttaattcaa gttatacttt tatggataat cgctacaagg
     6121 atggacagac aaattggttt ggtggagata gaatagaaaa tttaccaaga catattgcta
     6181 tgttaaaatt aaattacgag caaggaaaat ttagctctta tgttaaagcg cgtgcaagac
     6241 ttgatactat agccagatca aaaggtggtg gcagtggcac tttgccatgg caaaaatata
     6301 agccttttta tatagtggat ttgggagtaa attataaaat cgataaacaa tcaagtttga
     6361 gctttacagt gcaaaatctt tttgataaag atttctttga tccgcaagtt acaagatggg
     6421 atggtgctaa tccaggaggt tatgcaaatc gctatcaaga ttatacagaa ggaagaagtt
     6481 tttggttaag ttataaatat gatttttaaa ttgaaaaaaa gagtgtctta acttaaaaca
     6541 agtaaaaaca aagtataatg aagaaaaaat aaaggctttg ttttatgata tttaaaaatt
     6601 taaaagagct tcctttttgc gagtctaatt atatcaaacc caaaagattt agttatgaga
     6661 gcaatggaaa gttttgtact tgggatttta tagaatccaa agatagcgtt tcaattcttt
     6721 tatatcataa agaattgaaa agctttattt ttgttcgtca atttcgcata ccgctttggt
     6781 atcatcaaaa gcaagataaa aactatcata aagatgaaaa tatgggctat accatagaac
     6841 tttgttcagg gcttgtagat aaagatttac ccttagagca aatagccaaa gaagaatgca
     6901 tcgaagaatt aggctatgcc cctaaagaat ttgaaaaagt aggcgacttt tatacaggtt
     6961 ttggttcggg ggttagtaag caaagttttt attttgcaat tgtagatgag aatgacaaaa
     7021 tttgtgatgg tggcggggtt gatgacgagc aaatagaggc tgtttttgta aagatcaatg
     7081 aatatgaaga attttctaaa aagataatcc atacaccttt gcttgatttt gcttatttgt
     7141 ggtttttaaa agaaaagaaa gaactttgcc ttaaataaat aaggcaaaga attttggatt
     7201 aatttgcttc attgagcatt tctttaaata catcaaataa atgcaaagac gcattttcag
     7261 cattctcaca ttttttgata attgcatctt gagtattgct taagcttaca tcttctgtgt
     7321 ttgcgatgcg gatagcgcta ttcatatttt catgtacttt ttgatgtggc tcattgattt
     7381 ttataaagct tttgctatcg ccaaatcttt cttttccggt acttgctacc catttaccta
     7441 aacgacaact tgtatgatcg gctaattctt gtccagattt tgcaaaaatt tctttatatc
     7501 cattaagttt aaatgctata tgatcaagtt ttgccaaaga tacaaatgct tctgaggcaa
     7561 tacctacagc attcgaattt gtagagtgtg cttcgttgac taagtgggta aatttttctg
     7621 aaaaactcat aatgtgtgcg ttagaattaa tagaaatttt ttccacttgc tcactttggg
     7681 tatacatttc atttgcattt tgttttagaa gattgatatt catttccact tctgttgtag
     7741 ctttttgagt tttttcagct aactttctaa cttcatccgc aacaacagca aaacccctac
     7801 catgttctcc tgctctagca gcctctatag cagcatttaa tgctaaaaga ttggtttgat
     7861 cggatacatc tttaataagg ttaattacat ttgtaatctc atcaacgcta cgatgtaaag
     7921 ttcctgcaac atcgcgtgtt ttattagctg actctgtgat atcacccaaa gaagcgttta
     7981 tagaattggc tatatggttt aattcatcca tttcagctag tgaagttttg gaataattag
     8041 aaataatttc agctttatta acattttcaa gcatatcact ttggactatg gtaatatttt
     8101 tcaaaacacc gcctaataat acatttaaaa gatcggtttt taactttgac tctaaagctt
     8161 cttgctctaa gagtgaaatt ttatctttta actctaaatt ttcagccttg attttctcaa
     8221 gctgctgagt aagattttgg ttttcattct tgatatcttg aagctctgta tgatttattt
     8281 tacttccaaa catatttttt taccctattt tttatagttt gctagatatt ggtttaactg
     8341 atctttaata tgtaattttt cttttttaag atttgaaatt tcaatatcac ttaataaatt
     8401 tcttccttct tctgcatctt taatttgatc gtcaagttca ttatggcgct caaataattt
     8461 atcaaaatgc gcatcttttc cttttaactc tgacataagt tcacgatatt catgtaacat
     8521 aaaattctcc ttaaaaattg atacaattta aaaaatatta aacgatatgt tacattataa
     8581 ctaattaaat gatatttttg gcttaaaaaa tgctaaataa ttcaataaat cttaaatatg
     8641 ttacaaatta gcgatttgtt aaattaaata attataatga agatttttaa gtcattgagg
     8701 acgaatcctc aagagtttat ttagagtttt gtttttttaa agttcttaaa gtagaggcag
     8761 caattctcat ttttcttgta gtgccatctt ctagggttac acgaactgtt ctaagattag
     8821 gtaaaaagcg tctttttgtt ttattgttag catggctgac attattaccc accattggtc
     8881 ccttacctgt gatttgacat attcttgcca tatttgcatc ctttggaaat tttaaatcaa
     8941 gattttatca a
//
LOCUS       DBBXRO010000066         8928 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.067, whole genome shotgun sequence.
ACCESSION   DBBXRO010000066 DBBXRO010000000
VERSION     DBBXRO010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8928
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.067"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            1..3204
                     /locus_tag="ACJFEZ_001157"
                     /pseudo
     CDS             1..3204
                     /locus_tag="ACJFEZ_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839430.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            3292..4356
                     /locus_tag="ACJFEZ_001158"
     CDS             3292..4356
                     /locus_tag="ACJFEZ_001158"
                     /inference="COORDINATES: protein motif:HMM:NF038205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917280.1"
                     /translation="MQVKFFLKNRIFLSFASVALIFNSVSYAASQAISIGDKRFQTPR
                     HSFSNEEVWDFDDKTFKQINGTNYYGVFKQGLVSDITLEVFNPKQSLQGAKLEILTLN
                     HSSEEILEVQSMHAANPMDKNLHPIKILPFLVAGSSLKGDSINNKLLIKEAELSSAVF
                     LEPSNIKTKNPPKKEEKDKINYVISGGLAREGNAKNNTLELLDGSYINMGVENIYNLK
                     LNGAPYAVGGLAIFGDAIGNSLLAQKGSKVDIHTASFYRDMVGEFILDERITHLVGGL
                     AYNGKVEKNKLNLNGVEFNIHAPSGLYSSFAPVHIAGAFVDGNGKKAYDATKNTLVID
                     NFLLNLRADGKTPIFYNAIF"
     gene            4452..5135
                     /locus_tag="ACJFEZ_001159"
     CDS             4452..5135
                     /locus_tag="ACJFEZ_001159"
                     /inference="COORDINATES: protein motif:HMM:NF038205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917281.1"
                     /translation="MKVQGIYDFFSGYTLDGEANFNVIDFKDSQASLPLFIYATTQEN
                     FEGSIHYPEYAKHNKISLNNVFGRKDIRSGVEAMNVENNQVFYHNVEAQASGEGVNRE
                     SSVYIRAANLAKNNLFKASNYWATSMLNIYGIREVEESKNNQVIFNNVGFNTDRISEG
                     SELILIGGVGKRVHHNLLSIQDLEIGAYDKEKDFIYIAASAIPDANSNLALSYGNTLY
                     IGGDVSIHE"
     gene            5163..5390
                     /locus_tag="ACJFEZ_001160"
     CDS             5163..5390
                     /locus_tag="ACJFEZ_001160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917282.1"
                     /translation="MIRIPNYTNNKADDNTLPAPSLAQLTKDNHLILEQALRARVVNN
                     FEHYSLIYHSNNQDKPFIESLETPINLSEES"
     gene            5708..6040
                     /locus_tag="ACJFEZ_001161"
     CDS             5708..6040
                     /locus_tag="ACJFEZ_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0917283.1"
                     /translation="MKKILVGLKLCVGVCIANDILIKKGENLYKKCIACHGVNGDKIA
                     PGSKGNIKIGGLNKAYLIKQLQGYAAGKADNGGAKVIMYANTKNWKFTTSDIEAVSAY
                     IAQLPKAK"
     gene            6063..7604
                     /locus_tag="ACJFEZ_001162"
     CDS             6063..7604
                     /locus_tag="ACJFEZ_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HGG0917284.1"
                     /translation="MEKPFLKSIILASCLLTRALSQQNKENAEALEQMIEISPYKNVP
                     QNENIQNTLKSKQSPLDIKMDKQDSLQEDTKKVLDKEGLVAPSSEEFRFKYKFFVDTK
                     EDGKTLTLEDLGINEVWLRESIIALKRSDLNVETLQEIVNIVSYYFQYHGYPSATAYI
                     PQQEITDSIQINIMLGKLGEYQVKNYSKHLKESAISSKLKESLQGKILRTKALEDAIY
                     KINEMSGIKASGSLVAGSEYETTDVIITIEDSKKANAILFFDNYGSKGSGVYRAGVSG
                     ALNNLLGYGDSLNYFAQLSDEMQKSYGFTYNFFLGNLKVSPRVNKSNYELGEEYESLG
                     AYGSSLDLGVDLSYPLFINTTNSLYLTGGYVYRKLEDIYGSFGIDFNKESNAFYLGTE
                     GTIGLIPNNILSYNTQLTYGDIKPKSVFLENSPVMGEFWKFNAASNNAYYFNNKISHI
                     LNISYQKTIGDYQLDSSETATLGGAYGVRAYPNGFGEADSMILTTIGLRFNIFNPNFY
                     ITPFL"
     gene            7651..7827
                     /locus_tag="ACJFEZ_001163"
     CDS             7651..7827
                     /locus_tag="ACJFEZ_001163"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917285.1"
                     /translation="MAGREGKNDIFVDAVGLELLYIKPNGFYIKLDLAKAAYKYEADG
                     KRRDRLYTSMGFYF"
     gene            complement(8020..8259)
                     /locus_tag="ACJFEZ_001164"
                     /pseudo
     CDS             complement(8020..8259)
                     /locus_tag="ACJFEZ_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
     gene            complement(8273..8872)
                     /locus_tag="ACJFEZ_001165"
     CDS             complement(8273..8872)
                     /locus_tag="ACJFEZ_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HGG0917286.1"
                     /translation="MLPKWDSSFSVHNAKIDDQHKKLFELAAKVEIVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIAYPAFEEHKKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIIAKKWLLEHILYEDMKVEKWRSSSLATDEGKDVSFEAADDSDDDKPQFYLYKCN
                     CPGKVHDVPYGIHQKIELQGHKFTCKICKQAITFFQKHS"
BASE COUNT         3216 a         1222 c         1591 g         2899 t
ORIGIN      
        1 ataaaacatt ttttaaatac ttcatcatac tttactaatc atcttagcaa atctttaaga
       61 gttattgtaa atatttctgt aattacaagt ttggttttag ctcaaagctt aacagcatca
      121 aatttaccta gcggaggtaa gtttatcaat ggaactggaa gtattgctac aaatggcaat
      181 ataatgaata tcacaggaga taaaacacac aatgtgattg cttggggcgg tggatttaat
      241 atcggaaaag acaatactgt taatttcact acaaatggca aaaactattt aaatctagat
      301 tataccaaca aagcttctca aattctagga actttaaatg gtggaactaa caatgtttat
      361 attgtaaatc ctagtggggt attagtaggc gaaggagcta caatcaatgc caataaattt
      421 ggagtttcta taactccaat gggtatagat gcaatcaata ctttttcagt cgatggttct
      481 ttttctccag tttttaatgc caataaaggc gatgtggtta atatgggaac tattaaagcc
      541 aatgaaattg ttttagtagg aaacaaggta gaaaatataa aaggaacact tcaagcagat
      601 aaagtagata tcaagggaga taaggtttat ttagaagatt ttggaatcaa ctctactcat
      661 ttaaaagcag aaattgggag tgaaggcttt tttaaatatg aggtaaaaga tgtatatgat
      721 gcctataaag atgattcaaa tttagttgat aattatgagt ttactggtac tgctactact
      781 aatggaaatt ttaaagaata cctttacatt ggatctcaaa gtgcaagcaa tgaagagatg
      841 attaattctt ggaaaggatt tgcaaaatta gtcaatgagg ggatatttgg agaattaaaa
      901 tttaaagatg tatatttagg caaagatatt gattttgcag gtgctagtac aatcaatcct
      961 gtggggtttg gtaatggttt tgtaggtaat ttttatggta ataaccatac actttctaat
     1021 atacaaattg atgttgctga taaaacttat gtaggattat ttggttatat taagggtggg
     1081 agtgtgcaaa atttaactat tgatggattg caatttccca aatatgcctt ttcttataaa
     1141 tacctaggag gacttgcagg gcatatagaa aatggaactt tttctaatat tgctttagat
     1201 accatagaag gctttaatgg cgaaaatagt tcttctggtg gtttcgcagg agagataaat
     1261 tctgggactt ttaataatat cagtttaaaa aatctaggca acattggagt tgcgaaatat
     1321 gcaggtggct ttgctggtca aattaacggt ggagattttt caagtattat tttaagtaat
     1381 atagaaagta tttatggtaa gaataatggt gggggttttg taggatatac aacgggcaat
     1441 acaacttttg atggcatcgg tttaaaagat ataagattta ttaaatctgg agcttttaca
     1501 ggtggttttg cgggaatgac ataaggtaat gtgatatttg agaatattgt tctaaatgat
     1561 ttagaagaga ttagtggtag tcatgcaggt ggctttgtgg gaggtgttct taataatgag
     1621 aatggtatag cgagcttatc aaatatcgtt ttaaacaata ttgaaagtat taaaggtatt
     1681 ggttttatag gtggctttgc cggatggata aacaatggaa cttttgaaaa tattgcttta
     1741 aataatataa aaaatattag tgataataat tatgcaggtg gctttacagg atatgcaggc
     1801 gctggaactt ataaaaatat tattttaaat aacataggag aaattagcgc caatggtacc
     1861 gctagtctgg atgaaaaatc tatttatgca ggtggatttg ttggaaatat agagaatggt
     1921 agtaacattg ccaattctaa tatttacttc tatgggttat taaattcatc gtcgaacaag
     1981 aattatatta cccacaatga aaatatccta aatctatcaa atacaactga ttttcaaact
     2041 tttattaatc aaagcaaaat tgcaggtttg gagtatctta caaatacttc cactagcaac
     2101 tcccatcttc atatgataaa tggtggtaaa ataggaaatg agaaattcaa aatcaccttc
     2161 gataaggata attttactta caatactcca aaaatatcag aggtagatcc cgacggatca
     2221 ggatcaagct cttcacctac agctccaaac gaaggagagc tttcaagtat tactcttgaa
     2281 cagagtgatt ttgaagatga aattttaaaa accatcatcg atgaaatttt aaatgaggat
     2341 tatgtgttaa atatagattc tatcgatttt aacaaattca atgaaggtga tgtggctatt
     2401 cttttatatc tattaaaaaa tacaagcgat aaaaagctaa aagaatcttt aaaacaatcc
     2461 ttagaattct atactgaatt taacaaagga ggattaaaaa cagaatttga aaaatggtat
     2521 ggaagtgatg aaagtactta caaaacctct atgggtaaat acaattatat cattgagagt
     2581 cttgccaatc taaaagagta tgtaaacact attttaaaac ctgaattaaa aagtattaaa
     2641 aacaatctca atcgattgga atttttaaaa gctgaaataa aaagattaga aagagtctat
     2701 caaaaagcta tgcaaaatga tttacttcct tatgatcagt tagaagttgt ctataaaaac
     2761 acacaagaaa aaatcgatgc ttactatgct gaagcacagg gtttattgga tattcttaaa
     2821 aacaaaaata aacctttttt agacgattta attactaaag aatattcatt tgaagataaa
     2881 tatactgata ttcaagggac atttgctatc gcaggaagta gtattgatgc taatgccatc
     2941 gaaaatttgg cagataaacc tattttatct cttccagaaa atgagaattc aggagatagc
     3001 caaactacaa acaacacaga tagcacagat atagttaata ctttttctaa acaagtaaaa
     3061 cttacctcta cagagtctat tcttattctt cctgcagaag aaacacaaag tcatatcaaa
     3121 gaagacgaaa gagaacgagg aagagtttgc atcacaagtg acaatgcaaa aactaataat
     3181 ccttgtatag caatcacatt ttaatcacaa agaaagtaaa agctttcttt gtgagataaa
     3241 caagatttta atcaaatata atttcaattt attaagttga gggggaaaat aatgcaggtg
     3301 aaattttttc taaaaaatag aatattttta tcttttgcga gcgtagcttt gatatttaat
     3361 agcgtatcgt atgcagcaag tcaagctata tctataggcg ataaaagatt tcaaactcca
     3421 aggcatagtt tttctaatga ggaagtttgg gattttgatg acaaaacctt taagcaaatc
     3481 aatggcacta attattatgg tgtatttaaa caaggacttg taagcgacat cactttagaa
     3541 gtttttaacc ctaagcagtc tttacaaggc gctaagcttg aaattttaac tcttaatcat
     3601 tcctcagaag aaatcttgga agtgcaaagt atgcatgctg ctaaccctat ggataaaaac
     3661 ttgcatccta taaaaatcct tcctttttta gtggccggga gttctctaaa gggagattct
     3721 atcaacaata aacttcttat taaagaggca gaattaagct ctgcggtttt tctagagcca
     3781 agcaacataa aaacaaaaaa tcctccaaaa aaagaagaga aagataaaat aaattatgtt
     3841 attagtggtg ggcttgctag agaaggaaat gcgaaaaata ataccttaga acttcttgat
     3901 ggaagttata taaatatggg agtagaaaat atttataatc ttaaattaaa cggagctcct
     3961 tatgctgtag gagggcttgc tatctttggt gatgcgatag gaaattcttt gcttgcccaa
     4021 aaaggctcta aagtagatat tcacactgcc tctttttata gagatatggt aggggaattt
     4081 attcttgatg aaaggataac ccatcttgtt ggaggattag cctataatgg aaaggttgaa
     4141 aaaaataaac ttaatcttaa tggggtggaa ttcaacatcc atgctccaag cggtttgtat
     4201 tcttcttttg ctcctgttca tatcgcggga gcttttgttg atgggaatgg taaaaaagct
     4261 tatgatgcaa ccaaaaacac ccttgttata gataattttc ttttaaattt aagagcggat
     4321 ggaaaaactc ccatttttta taacgctatt ttttagcaaa tttctttgga ggaaagacaa
     4381 ataaagggga tgcaaatgca aactccattg tcttaaaaga tgttcctgcg ctaaaaagaa
     4441 taagtaaaaa agtgaaagta caagggattt atgatttctt tagtggatac acacttgatg
     4501 gagaggctaa ttttaatgtg attgatttta aagattctca agcttctcta ccacttttta
     4561 tttatgcaac cacacaagaa aactttgaag gatctatcca ttatccagag tatgcaaaac
     4621 acaataagat tagcttaaat aatgtctttg gaagaaagga tattcgctct ggagtagagg
     4681 ctatgaatgt agaaaacaat caagtcttct atcacaatgt agaagcacaa gcttctggag
     4741 agggagttaa tagagaaagc agtgtgtata ttagagcagc caatcttgca aagaataatc
     4801 tctttaaagc aagcaattat tgggcgactt ctatgcttaa tatttatggt attcgtgagg
     4861 tggaagaatc taaaaataat caagttattt ttaataatgt aggctttaat actgatagaa
     4921 tttctgaagg ttcggaattg attttaatag gtggagttgg caagagagta catcacaatc
     4981 ttttaagtat tcaagattta gaaattggag cttatgataa agaaaaagat tttatctata
     5041 ttgcagcaag tgcaattcct gatgccaata gcaatctagc actctcttat ggcaatacac
     5101 tctatattgg tggagatgtt tctatccatg agtgatcgct tttaaatgtg ctaagtggga
     5161 gtgtgattag aattccaaac tatacaaata ataaagccga tgataacaca ctgcctgcac
     5221 cttctttggc gcagcttaca aaagataacc atttgatttt agagcaagct ctgagggcta
     5281 gagtagttaa taactttgaa cattatagtt taatttatca ttctaataat caagataaac
     5341 cttttattga aagtttagag actcctatta atctctctga agaatcctaa atcactctac
     5401 ttttaaaaaa gggagaaaaa gctcctgaaa aaggaagtaa aattgcatta atttcaagtc
     5461 aaaatggttt tagtggtatt aatggcaatg ctatgaataa aagccaatta aatcaactct
     5521 tagggaggat ttctaaaaat ccaaaaacac ttaattataa aaagattcct cagctccaac
     5581 aagaaaacct aagggttgtt cctttaactt tatctttaga taataaagga aaagtgattt
     5641 atggagaaat ccaaagtgat taaaaatcaa taacttaaca aagaaaattt taaaagaagg
     5701 acaaaaaatg aaaaaaatat tagtgggttt aaaattgtgt gtaggagtat gcatagcgaa
     5761 tgatatccta atcaaaaagg gagagaatct ttataaaaaa tgtattgctt gtcatggcgt
     5821 aaatggagat aaaatagctc ctggaagcaa gggtaatatc aaaatcggag gattaaataa
     5881 agcctatctc ataaaacagc ttcaaggcta tgctgcaggg aaagcagata atgggggagc
     5941 aaaagttatc atgtatgcta atacgaaaaa ttggaaattt accacttccg atattgaagc
     6001 agtgagtgct tatatcgccc aattgcctaa agcaaaataa aaaatacaaa gcaaggaaat
     6061 ttatggaaaa acctttttta aagagtatca ttctagcttc ttgtctttta acaagagcac
     6121 tttcgcaaca aaacaaagaa aatgcagaag ctttagagca aatgatagag atttcccctt
     6181 ataaaaatgt ccctcaaaac gaaaacattc aaaatactct aaaaagtaaa caatcccctt
     6241 tagatattaa aatggataaa caagattctt tacaagagga tactaagaaa gtcttagata
     6301 aagagggatt agtagcacca agctctgaag aatttcgctt taaatataaa ttctttgtgg
     6361 atactaaaga ggatggaaaa acactcactt tagaagatct tggaatcaat gaagtatggc
     6421 ttagagaatc tattattgct ctaaaaagat cggatttaaa tgtagaaacc ttgcaagaaa
     6481 ttgtcaatat cgtttcttat tattttcaat accatggtta tccatcggca actgcctata
     6541 ttcctcaaca agagatcaca gattcaatcc aaattaatat tatgctagga aaacttggag
     6601 aatatcaagt taaaaattat tctaagcatc taaaagagag tgctattagc tctaagctaa
     6661 aagaatcact ccaaggaaaa attttaagaa ctaaagcatt ggaagatgcg atttataaaa
     6721 tcaatgaaat gtcaggaatt aaagcaagcg gaagtttagt tgctgggagt gagtacgaaa
     6781 ctacagatgt gattattaca atagaagatt ccaaaaaagc aaatgcgata cttttctttg
     6841 ataattatgg aagcaagggc tctggtgttt atagagctgg tgtgagtggc gctttaaata
     6901 atctcttagg atatggagat tctcttaatt actttgcaca actttctgat gaaatgcaaa
     6961 aaagttatgg atttacttat aattttttct taggaaatct caaagtttct cctagagtga
     7021 ataaaagcaa ttatgaatta ggagaagaat acgaaagttt aggtgcttat ggaagttctt
     7081 tagatttagg ggtggattta tcttatccac tctttatcaa cacaactaat tctctatatc
     7141 ttactggagg ttatgtttat agaaagcttg aagatattta tggaagcttt ggaattgatt
     7201 ttaacaaaga aagcaatgcc ttttatttag gaactgaagg aactataggt ttaattccta
     7261 ataacattct tagctataac acgcaactta cttatgggga tataaagcca aaaagtgtat
     7321 ttttagaaaa tagtcctgtc atgggagaat tttggaaatt taatgcagct tcgaataatg
     7381 cttattattt taataataaa atttcacaca ttcttaatat tagctatcaa aaaactatcg
     7441 gagattatca gctagattct agtgagactg cgactttggg aggagcttac ggcgttagag
     7501 cttatcctaa tggatttgga gaggcagata gtatgatttt aacaacaatt ggactaagat
     7561 ttaatatatt taatcctaat ttttacatta cccctttttt atgaatttgc ccatggatgg
     7621 aatgaagatt atttagataa tgatatcaat atggcgggta gagaaggaaa aaatgatatt
     7681 tttgtggatg cagtggggtt ggaattgctt tatattaaac ccaatggatt ttatattaaa
     7741 ctagatttag caaaggcagc ttataaatac gaagcagatg gaaaaagaag agatagactc
     7801 tatacaagta tgggatttta tttttaaggc ttttaaatca attttacagc caagaaactt
     7861 tatcgcattg tgataaagtt tctataaaag tttttattca ggttttttga ggttcttaac
     7921 gattttatct atctttttac ttgcttttga ataatctccg tcctttagtt cttctaaggc
     7981 ttcgatagca aaatcaaaat cacctaaatc atctgattcc ttttgaagat tttccacaac
     8041 cttatctatc tttttacttg cttttgaata atctccgtct tttaattctt ctaaggcatt
     8101 gactgcaaaa gaaaaatctt caatttcgtt aagataggct tctaaggctt ctctaactat
     8161 acttgattta ggcttggaaa gatttttact caaattatct aagcgttttt taagttctaa
     8221 aggcattcta agggaataat ttctagtttc ttgtttcatt aacttaacct ttctaggaat
     8281 gtttttgaaa aaatgtaatt gcttgcttac agattttgca agtgaatttg tgcccttgta
     8341 attcaatttt ttgatggata ccataaggga catcatgtac tttacctggg caattgcatt
     8401 tataaagata aaattgcggc ttgtcatcat cactatcatc tgctgcttca aagctgacat
     8461 ctttaccttc atctgttgct aaagaagagc ttctccattt ttctaccttc atgtcttcat
     8521 agagtatgtg ctctaaaagc cattttttcg ctatgatgta aagtttttcc ttaagatcat
     8581 ttgtagattt gatatcttta ataagattaa tcatagtttg tatgatttct ttatgaattt
     8641 ttttatgttc ttcaaatgct ggataagcaa tgagttgcat atatttttct tcatcattaa
     8701 aatgatcttt catgtaattg aaaaattcag ccaaaagctc ttttacttca tttttgctta
     8761 ccgatctatc agaaacaatt tcaacctttg ctgcaagctc aaaaagtttt ttatgctgat
     8821 catcaatttt ggcattgtgc acactaaaac tgctatccca ttttggaagc attttgactc
     8881 cttgaaaaat ttatttgcat taaagattat aacataaaaa taagttaa
//
LOCUS       DBBXRO010000067         8921 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.068, whole genome shotgun sequence.
ACCESSION   DBBXRO010000067 DBBXRO010000000
VERSION     DBBXRO010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8921
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.068"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            19..918
                     /gene="hisG"
                     /locus_tag="ACJFEZ_001166"
     CDS             19..918
                     /gene="hisG"
                     /locus_tag="ACJFEZ_001166"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HGG0917287.1"
                     /translation="MQENSRLRIAIQKSGRLSKESVELLNKCGIKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERKSLGEEANYKLLTKLDFG
                     YCRLSLALPQEKKFDNLKDFENLRIATSYPQLLKRFMKENNIHYKNCMLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYQSRACLIQKQNTLSDEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQSLLPGVEKPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            926..2212
                     /gene="hisD"
                     /locus_tag="ACJFEZ_001167"
     CDS             926..2212
                     /gene="hisD"
                     /locus_tag="ACJFEZ_001167"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HGG0917288.1"
                     /translation="MQIINFNELDEKQKQEVLKRPAIAAKDEISQIVSSIIKEVREKG
                     DEALIEQALKFDKAQISSIKVSEEELENASLRLDKDLKEAILIAYENIKKFHEAQIPK
                     EIAIETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAQCEKIVLASPA
                     KINDTTLFCAKLCGVDEIYQMGGAGAIAALAYGTKSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADEKANVKFVASDLLSQAEHGADSQVILVCLSKEFAQ
                     GASDEVSRQLENLPRKELASKSIANSKIIIAKNLDEALLISNLYAPEHLIIQTQNPRE
                     LLDKVKHAGSVFLGELSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMSVQEL
                     SKEGFLNLGKSVEILAANEHLDAHKNAVTFRLESLK"
     gene            2209..3270
                     /gene="hisB"
                     /locus_tag="ACJFEZ_001168"
     CDS             2209..3270
                     /gene="hisB"
                     /locus_tag="ACJFEZ_001168"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004401 - histidinol-phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HGG0917289.1"
                     /translation="MSEKILFIDRDGTIIEEPKSDFQIDSLEKLRFEKGAIPTLLKLK
                     NFGFKFVLVSNQDGLGTQSFPKEDFEIAHQKMLDILQSCGIEFKDIFICPHFENENCE
                     CRKPKTALLDEYIKHNLYNKEQSFVIGDRDTDMILASNLGVRGLKYSENLTWKEIEEE
                     ILNSFRTASISRITKETNIHVKVCLNGGKIAINTGVPFFDHMLEQIAVHGGIGLEISC
                     KGDLEIDEHHSVEDVALALGSAIKQALGDKIGITRYGFVLPMDECLASCAIDFCNRPH
                     LVYKAKFKKEKLGELSTEMIEHFFYSLSYSMGVSLHLKVKGKNDHHKAEGLFKAFAKA
                     LKMAVKIESENLASSKGVI"
     gene            3267..3854
                     /gene="hisH"
                     /locus_tag="ACJFEZ_001169"
     CDS             3267..3854
                     /gene="hisH"
                     /locus_tag="ACJFEZ_001169"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HGG0917290.1"
                     /translation="MKLIIIDTACANLASLKFCLDRLGFNAKISRDLKDLENADKLFL
                     PGVGTAAKAMSNLESFNLTNFIKNTKKPLLGICLGMQILGDFSEELDQETLGIIPFKT
                     QKFELPKEYSLPHMGWNEVASSHPLFKGLNGAYFYFVHSYHVALNDYTIATSDYGVKF
                     SASLAKDNFYGVQFHPERSGEAGEILISNFIKDIA"
     gene            3851..4579
                     /gene="hisA"
                     /locus_tag="ACJFEZ_001170"
     CDS             3851..4579
                     /gene="hisA"
                     /locus_tag="ACJFEZ_001170"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HGG0917291.1"
                     /translation="MIIPALDLIDGQVVRLVKGDYEQKKVYKYDPLEKFREYENAGAT
                     WLHLVDLSGAKDPNKRQLALIEKLTNEVSVNLQVGGGIRTKEEIQALLDCGVKRVVIG
                     SLAITNPTLCVEILQHFGSEAIVLALDTILKEDYMIAINAWQDTSDKRLLEVLEFYNI
                     KGLKHILCTDISRDGTMQGSNAELYALIHKNFPKIHTQASGGVASLEDLKKLKGICSG
                     VIVGKALLDGVFSVEEGIKCLQNA"
     gene            4561..5328
                     /gene="hisF"
                     /locus_tag="ACJFEZ_001171"
     CDS             4561..5328
                     /gene="hisF"
                     /locus_tag="ACJFEZ_001171"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HGG0917292.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIVELAKRYSQSGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPNLITRLAKSFGVQCVVVGIDSFKDENGNLKVFKYTGDENTSKHSGKNTIE
                     WIKEVQDLGAGEIVLNMMNQDGVKNGYDLEQLSLVKKECKVPLIASGGAGKMEHFLEA
                     FEIGVDGALAASVFHQQIIDIKELKNYLKTRGVSIRI"
     gene            5331..5954
                     /gene="hisIE"
                     /locus_tag="ACJFEZ_001172"
     CDS             5331..5954
                     /gene="hisIE"
                     /locus_tag="ACJFEZ_001172"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HGG0917293.1"
                     /translation="MQNFQNLNEKINWQKVNGLIPVIIQDAKSCEVLMLGFMDEKALE
                     KSLESKKVVFFSRTKNRLWMKGEESGNFLNIVDLSLDCDNDTLLILVDPIGATCHIGN
                     ISCFENVSKNADFVFLARLEKLINSRKNADENTSYTTKLFKKGTKRIAQKVGEEGVET
                     ALAATVKDKDELICEAADLMYHLSVLLADANLSFSDVIAKLKERHKE"
     gene            5956..6522
                     /locus_tag="ACJFEZ_001173"
     CDS             5956..6522
                     /locus_tag="ACJFEZ_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917294.1"
                     /translation="MKNIILGFLIFFIYPALMMFFILMHRKYISEVPMLGFHTNMEIF
                     KRAGIYYFYLLVIHIPLFLVWKKVISRIESLDFINTFYFGIAFSLCVFFLLTLPLDGH
                     LALVPLLCVLFSFVFVFKFIYFCFKKISYFTWKKLIFIITTLLGICAGLAYIFFCLYY
                     QLYIFDNYDFLGKFYNIPSYKRPLNFIF"
     gene            complement(6580..7740)
                     /locus_tag="ACJFEZ_001174"
     CDS             complement(6580..7740)
                     /locus_tag="ACJFEZ_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrodipicolinate N-succinyltransferase
                     N-terminal domain-containing protein"
                     /protein_id="HGG0917295.1"
                     /translation="MINTKEDFLLLIKQIEQKNGYRKPKAFGIARLDRGQLNKNKILQ
                     ASFALVNYEQNFGSAAIMLEAFMQRGVEIDFEASEFVQILKLEDIDYALACFKPFLEE
                     EGHKNIDILKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSLNLN
                     GAFGLLSNVAWSDDKPIELEYLRENEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGFPLGDNCIVDAGIAVLEGTKFLLKDREEL
                     AKLNPYFDFSKEIYKGIELKGLNGLHFRQDSISGAMIVSLNKKAIKLNEALH"
     gene            complement(7762..8868)
                     /locus_tag="ACJFEZ_001175"
     CDS             complement(7762..8868)
                     /locus_tag="ACJFEZ_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HGG0917296.1"
                     /translation="MKEQILEKLKSVKYPGFDKDIVSFNFVKDIKTENENVIVELEIV
                     SSNPQVSEELRKNIDEALASLNLKNLQIHIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILSHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSAKRYLMA
                     AEKIWQFIEKINNEGGADNSAIQPVMNGKSACSH"
BASE COUNT         3080 a         1465 c         1569 g         2807 t
ORIGIN      
        1 aatgcaagga tataaaatat gcaagaaaat tctcgtttgc gtatagctat acaaaaatca
       61 ggcagactct ctaaagaatc cgtagaactt ttaaacaaat gcggaattaa aatgcatata
      121 catgagcaaa gtctcatagc tttttcaacc aacctaccta tagatatttt aagagttaga
      181 gatgatgaca tacctggtct tatctttgat ggagtcgtag atcttggcat tataggcgaa
      241 aatgttttgg aagaaaatga actcgaaaga aaaagcttag gcgaggaagc aaattacaag
      301 cttttaacaa agcttgattt tggttattgt agactttcac ttgccttgcc tcaagagaaa
      361 aaatttgata atttgaaaga ttttgaaaat ttaagaatcg ccacttctta tccacagctt
      421 ttaaaacgct ttatgaaaga aaacaacatt cattataaaa attgtatgct tacaggttca
      481 gttgaagtag ctccaagagc aaatttagcc gatgcgattt gtgatcttgt ttcaagcggt
      541 gcaacactac aagcaaacaa tcttaaagaa gttaaagtta tttaccaatc tcgtgcttgt
      601 ttgatacaaa agcaaaatac tctaagcgat gaaaaacaag ctttggttga taaaatcatg
      661 cttcgcgttg caggagtaat gcaagcaagg gaaagcaaat acatcatgct tcatgctcca
      721 aaagaaaaac ttgataaaat ccaatcccta cttccaggcg tagaaaagcc tactatcttg
      781 cctttagcac acgatgaaaa aaatgtagcc ttgcatatgg taagtaaaga aaatcttttt
      841 tgggaaacta tggaggcctt aaaagaagaa ggtgcgagtt cgattttggt tttacctatt
      901 gaaaaaatgt taaagtgagt aaaaaatgca aataataaat tttaacgaat tagacgaaaa
      961 acaaaaacaa gaagtattaa aacgccctgc aatagcagca aaagatgaaa tttcacagat
     1021 agtgagctct atcatcaaag aagttagaga aaaaggcgat gaagctttga tagaacaagc
     1081 tttaaaattt gacaaagccc aaatttcaag cattaaagta agtgaagaag agcttgaaaa
     1141 cgcaagctta cgcttggata aagacttaaa agaagcgatt ttaatcgctt atgaaaatat
     1201 caaaaaattc cacgaagcac aaattccaaa agaaatagcc attgaaacca ccaagggtgt
     1261 aaaatgcgaa gttttaacac gccctattga aaaagtagga ctttatatac cagggggttt
     1321 ggcgccttta ttttcaacgg ttttaatgct agcaattcct gcaaaaatag ctcaatgtga
     1381 aaaaatcgtt ttggcaagcc ctgctaaaat aaacgatacc acactttttt gcgccaagct
     1441 ttgcggagta gatgaaattt atcaaatggg tggtgcagga gccatagcag cactagctta
     1501 tggaaccaaa agcgttttaa aagtagataa aatctttggg ccaggcaatg cctttgttac
     1561 cgaagctaaa cgccaagtaa gtagtgatat aaacggagct gctatagata tgcaagctgg
     1621 acctagtgaa gttttagtca tagcagatga gaaagcaaat gttaaatttg tagcaagcga
     1681 cttgctttca caagctgaac acggcgcaga ttctcaagtg attttagtat gcttaagcaa
     1741 agaatttgca caaggtgcga gtgatgaagt aagccgccaa cttgaaaatt taccaagaaa
     1801 agaattagcg tctaaaagca ttgcaaattc taaaatcatc attgcaaaaa acttagatga
     1861 agctctttta atctcaaatc tttacgcacc tgagcactta atcatacaaa cacaaaatcc
     1921 tcgcgaactt ttagataaag tcaaacacgc tggatctgta tttttaggtg agttaagtcc
     1981 agaatccatg ggtgattatg caagcggaac aaatcatgtc ttgccaactt atggacttac
     2041 taaaacgcat tctagcttgg gtttagctga ttttagtaaa agaatgagcg tacaagaact
     2101 tagcaaagaa ggctttttaa atttaggaaa aagtgttgaa attttagctg caaatgaaca
     2161 tttagacgca cataaaaatg cagtaacttt tcgcttagaa agtctaaaat gagtgaaaaa
     2221 atccttttta tcgatagaga tggcaccatc atagaagaac caaagagcga ttttcaaatc
     2281 gatagccttg aaaaacttcg ttttgaaaaa ggtgctatcc ctactctttt aaaacttaaa
     2341 aattttggct ttaaatttgt gcttgtttct aatcaagatg gccttggaac tcaaagcttt
     2401 cctaaagaag attttgaaat agcacatcaa aaaatgttgg atattttaca aagctgtggt
     2461 atagaattta aagacatttt catttgtcca cattttgaaa atgaaaattg cgagtgtaga
     2521 aagccaaaaa ccgccctttt agatgagtat atcaagcaca atctttacaa taaagaacaa
     2581 agctttgtga tcggtgatcg agatactgat atgatcctag cttcaaattt gggtgttcgt
     2641 gggttaaaat acagcgagaa tttgacttgg aaagagatag aagaagagat cttaaattcc
     2701 tttcgcaccg caagcatttc gcgtatcact aaagaaacca atatccatgt aaaagtatgt
     2761 ttaaatggcg gaaagattgc tattaataca ggagttcctt ttttcgatca tatgcttgag
     2821 caaatcgcag tacatggggg cataggactt gaaatttctt gcaagggcga tttagaaatt
     2881 gatgagcatc atagcgttga agatgttgct ttagctttag gaagtgccat aaaacaagct
     2941 ttaggagata agataggcat cacaagatat ggctttgtct tgcctatgga tgagtgtttg
     3001 gcaagttgtg cgatcgattt ttgcaaccgt ccgcatttgg tttataaagc caaatttaaa
     3061 aaggaaaaat taggcgaatt aagtactgaa atgatagaac acttttttta ctcgctaagc
     3121 tactcaatgg gagtgagttt acacttaaag gttaaaggta aaaacgatca tcacaaagcc
     3181 gaagggcttt ttaaagcttt tgcaaaagcc ttaaaaatgg ctgtaaaaat tgaaagtgaa
     3241 aatttagcca gctctaaagg ggtaatatga aactgatcat catcgataca gcatgtgcaa
     3301 atttggcatc tttgaaattt tgtcttgata gactaggctt taatgctaaa atcagtagag
     3361 atttaaaaga tttagaaaat gcggataagc tttttttacc aggagttgga acagcagcaa
     3421 aagcaatgag caatttagaa agctttaatc taacaaattt tatcaaaaat accaaaaaac
     3481 ccttacttgg aatttgccta ggaatgcaaa ttttagggga tttttcagaa gaactagatc
     3541 aagaaactct aggcattata ccttttaaaa ctcaaaaatt tgaacttcca aaagagtatt
     3601 ctttaccgca catggggtgg aatgaagttg caagctcaca cccacttttt aagggtttaa
     3661 atggggctta tttttatttt gtacacagtt atcatgtagc attaaatgac tataccatag
     3721 ctacaagtga ttatggggta aaatttagcg caagtttagc aaaagataat ttttatggcg
     3781 tacaatttca ccctgaaaga agcggagaag cgggggaaat tttaatatca aatttcatta
     3841 aggatatagc atgataatcc ctgcacttga tttgatcgat ggacaagtag tgcgccttgt
     3901 taaaggtgat tatgaacaaa aaaaagtata caaatacgat cctttagaaa aatttagaga
     3961 atatgaaaac gcgggagcaa cttggcttca tttagtggat ttaagcggag ctaaagatcc
     4021 aaataaaaga caacttgctt taatagaaaa attaacaaat gaagtcagtg ttaatttgca
     4081 agtaggcggt ggaattcgca ccaaagaaga gatacaagct ttgcttgatt gtggagtaaa
     4141 gcgtgtagtg atcggctctt tggcaattac aaatcctacg ctttgtgttg aaattttgca
     4201 acattttgga agcgaagcta tcgttttagc gcttgatacg attttaaaag aagattatat
     4261 gatagctatt aacgcttggc aagatacgag cgataaaaga cttttagagg ttttggaatt
     4321 ttataatatc aaaggcctaa aacacatact ttgcaccgat atttcaagag atggcaccat
     4381 gcaaggaagc aatgctgaac tttacgcact catccataaa aactttccta aaattcacac
     4441 tcaagcaagt ggaggtgtag cgagtttaga agatcttaaa aaactaaagg gtatttgtag
     4501 tggggttatc gtaggaaaag ctttattaga tggagttttt agcgtagaag aagggataaa
     4561 atgcttacaa aacgcataat tgcatgttta gatgtaaaag atggtagagt agtaaaagga
     4621 acacagttta aaaatcataa agatatggga gatatcgtag agcttgcaaa gcgttattct
     4681 caaagtggga tcgatgagct tgtgttttat gatattgctg caagtgctag aaaagaacgc
     4741 atttcaagag aatgggtaag cgaagtggct aaaaatatca atatcccttt ttgtgtagca
     4801 ggcggcatta aaagtgaaga agatgcagcc gaactcttag ccaatggagc ggataaaatt
     4861 tctatcaact cccctgcttt aaacgatcca aatcttatca ctcgtttggc caaaagtttt
     4921 ggggtacaat gtgttgtagt gggcattgat agctttaaag atgaaaatgg aaatttaaag
     4981 gttttcaaat acacaggtga tgaaaacacg agtaaacata gcgggaaaaa tacgatcgag
     5041 tggattaagg aagtacagga tttgggcgct ggagagatag tgctaaatat gatgaatcaa
     5101 gatggtgtta aaaatggata tgatttagaa caattaagcc ttgtaaaaaa agaatgcaaa
     5161 gtacctttga tcgcaagcgg tggagctggt aagatggaac actttttaga agcctttgaa
     5221 ataggagtgg atggggcttt agcagcttct gtttttcatc aacaaatcat tgatattaaa
     5281 gaattaaaaa actacttaaa aacccgaggt gtaagtataa ggatataaaa atgcaaaatt
     5341 tccaaaattt aaatgaaaaa atcaattggc aaaaagtaaa tgggcttatc cctgtcataa
     5401 tacaagatgc aaaaagctgt gaagttttaa tgctaggttt tatggatgaa aaagctttag
     5461 aaaaaagctt agaaagtaaa aaagtcgtat ttttttcgcg tactaaaaat cgcctttgga
     5521 tgaagggtga agaaagtgga aattttttaa atatcgttga tttaagcctt gattgtgata
     5581 atgatacact tttgattttg gttgatccta taggagctac ttgccatata ggcaatatct
     5641 cttgctttga aaatgtatca aaaaatgcag attttgtctt tttagcaaga ttagaaaaac
     5701 ttataaattc acgtaaaaat gcggatgaaa acacttccta tactacaaag ctttttaaaa
     5761 aaggaacaaa acgcatcgca caaaaagtcg gcgaagaagg tgtggaaact gccttagcag
     5821 cgactgttaa agataaagat gagcttattt gcgaggcggc tgatttgatg tatcatttaa
     5881 gtgttttact cgcagatgca aatttaagtt tttcagatgt catcgctaag cttaaagaaa
     5941 gacataaaga ataaattgaa aaatatcatt ttaggctttt tgatcttttt tatctaccct
     6001 gcattaatga tgtttttcat cttaatgcat agaaaatata tatctgaagt gccaatgtta
     6061 ggttttcata caaacatgga aatttttaaa cgagcaggta tttattattt ttatctttta
     6121 gtaattcata tccctttatt tttagtgtgg aaaaaagtta tttcaaggat agaaagttta
     6181 gattttataa atacttttta ttttgggatt gcttttagcc tttgtgtgtt tttcttgctt
     6241 accttgcctt tagatgggca tttagcttta gtgcctttgc tatgcgtgtt gtttagtttt
     6301 gtctttgttt ttaaatttat ttatttttgt tttaagaaaa tttcttattt tacttggaaa
     6361 aaacttattt ttataataac tacattacta ggtatttgtg caggtttagc ttatatcttt
     6421 ttttgccttt attatcaact ttatattttt gacaattacg attttttagg taaattttat
     6481 aatatccctt cttataaaag gcctttgaat tttatatttt aatgaaaaat atggacaaaa
     6541 aagcctaaaa ttaggctttt gtcgataatc tagggtaaat taatgcaaag cttcgttaag
     6601 cttgatcgct tttttattta aacttactat catcgctccg ctgatagaat cttgacggaa
     6661 atgaagccca tttaagcctt taagctcgat gcccttataa atctctttgc taaaatcaaa
     6721 ataaggatta agtttagcaa gctcctcacg atctttaagt aaaaatttcg ttccttcaag
     6781 cactgcaatt cccgcatcta cgatacaatt atcacccaaa ggaaatcctg ttactgaatt
     6841 tgctcctaaa agacaagctt tacctacact tatagcattt ccacttgttc cgcttaaaac
     6901 acctaaaata gaagcaccac cgcccacatc agagccttca cctacgatag cacttgaact
     6961 tatacgccct tcaaccatac aagcccctgt tgttcctgcg ttaaaattca catagcttgc
     7021 acctggcatg attgtagtac ctgcagccaa agatgcaccc attcttactt tagagctttc
     7081 tagaattctt gtattatctt caggaatgat atgtgctaaa aatcttggga atttatctac
     7141 aaaatcaatt tttggatatt gattgctcat ttttaaacgc atttcatttt ctcttaaata
     7201 ctcaagctcg ataggcttat catcactcca agctacattg cttaaaagtc caaaagctcc
     7261 atttaaattt aaacttctta aaggaacttt tttagtagaa agcaaataaa gtttcaaata
     7321 aacactttcc acactcaaag gctctttatc ttcaaaaaga catacaaaag caaattcgtc
     7381 atctttaaat ttatctttga taatctttaa aatatcgata tttttatgtc cctcttcttc
     7441 taaaaaaggt ttaaagcaag caagcgcata atcgatatcc tcaagcttaa gaatttgtac
     7501 aaattcgctt gcttcaaaat caatctcaac acccctttgc ataaaagctt caagcataat
     7561 cgccgcagaa ccaaaatttt gctcataatt taccaaagca aaactggctt gtaaaatttt
     7621 atttttatta agctgaccac gatcaagtct tgctatacca aaagctttag gttttctata
     7681 tccatttttt tgttcaattt gtttgattaa aagtaaaaaa tcttctttag tattaataat
     7741 cattttttct ccttcaaaat tttaatgcga acaagcactt tttccattca tcacaggttg
     7801 gattgcagaa ttatccgcac cgccttcatt attgattttt tctataaatt gccaaatttt
     7861 ttcagctgcc attaaataac gctttgcact tacactttca ggatgataaa aactcacagg
     7921 ttttccttca tctccaccct ctcttactat catctctata ggaatttgtg ctaaaacttc
     7981 actcttataa gcttttgcca tatcttcagc tgttccttta ccaaaaatat catactcttt
     8041 gccattatca ggacataaaa agccactcat attttctatc acgccagcga ttggaatgtg
     8101 aagtttgtta aacatatcta aagctctttt gctatcatct aaagaaacgg tttgtggggt
     8161 acttacacaa acacccgcag taattggaat gctttgtgct gaagtaattt gcgcatctcc
     8221 tgttcctgga ggcatatcta aaaacaatac atcaagttca ggccaaatca catctgcaag
     8281 taattgctcg atagctttca tgatcatagc tccacgccac ataagccctt gaccctcttc
     8341 gattaaaacc cccatactca tcatataaac accatgactt aaaatcggct ttaatctttg
     8401 tcctactact tcaggttgag ttttagtttc acctaacatc cttgggatat ttggcccata
     8461 aatatctgca tctaaaatcc ctactctttt tcccatttta gccatagaaa tagctaaatt
     8521 tacagtggtt gtagacttac ctactccgcc ctttccgctt gaaaccatga tgaaattttt
     8581 tacttgaggt gcgatatttt taccacttct tgaattgctt ttttcttcag gaatttttgg
     8641 agtaatgata tgaatttgta aattctttaa atttaaagaa gctaaagcct catcaatatt
     8701 tttgcgtaat tcttcgctta cttgcggatt tgatgaaaca atttcaagct caacgataac
     8761 attctcattt tcggttttta tatcttttac aaaattaaaa ctcactatat ccttatcaaa
     8821 acctggatat tttacacttt ttaatttctc taaaatttgc tctttcatct cttttcctta
     8881 atttttaaaa aatcaatttt actaataaaa tgataaaatt t
//
LOCUS       DBBXRO010000068         8670 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.069, whole genome shotgun sequence.
ACCESSION   DBBXRO010000068 DBBXRO010000000
VERSION     DBBXRO010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8670
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.069"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..343)
                     /locus_tag="ACJFEZ_001176"
     CDS             complement(<1..343)
                     /locus_tag="ACJFEZ_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917297.1"
                     /translation="MKILRLAIKDFFTLQFLKFALIPLTFSFILMIFLAIFGFSFLLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITLISVLFSGFVIIFASVFLALFITSFLTPLI
                     VKQINNKYYHHE"
     gene            complement(345..1034)
                     /locus_tag="ACJFEZ_001177"
     CDS             complement(345..1034)
                     /locus_tag="ACJFEZ_001177"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HGG0917298.1"
                     /translation="MKNVEILENMLKLQQKLNDETNGLNWEEGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISSPTNWENVRMEIVDIWHFILSLLLEEYTNKKDKNFQAIA
                     NEIISVSVFQDFCKEEGNPSENDLYSILNDIELIIHKCSGFGFSLGELLSNYFILAIK
                     CGLNLEILYKTYIGKNILNIFRQNNGYKQGTYKKDWNGKEDNEVLAEILEQELDFDTI
                     YKKLEEYYKKV"
     gene            complement(1074..1637)
                     /gene="ciaI"
                     /locus_tag="ACJFEZ_001178"
     CDS             complement(1074..1637)
                     /gene="ciaI"
                     /locus_tag="ACJFEZ_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HGG0917299.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSLSYSNDEEGKSL
                     NLKRQYGFSFTFEGSKLTQADLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQSNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQNNAEKGLNLYA"
     gene            1714..2130
                     /locus_tag="ACJFEZ_001179"
     CDS             1714..2130
                     /locus_tag="ACJFEZ_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917300.1"
                     /translation="MDERILEFIKNEQLLSWAMSDEKGVYIANAFYIFDEKNLAFIIA
                     SHEDTKHIKLASENPSIALNIAKESKIAFLKGIQAKAKFKSASKEQIKIYFSKFPFAK
                     LDKSAKIYALELDWLKFTNNALGFGKKLEFYKDKIL"
     gene            2194..2976
                     /locus_tag="ACJFEZ_001180"
     CDS             2194..2976
                     /locus_tag="ACJFEZ_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0917301.1"
                     /translation="MLNVIHALFFRELKTRFGKNKYLGYFWVIGEPMSVILILTTIVT
                     ILREYHHQLMPEGISVFMFLISGIVPYFMFRSIVTQLMNGIGANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFVAVLFIVGWFFRLEVIPRHFLSVMICIFLLMCSGFALGMVFA
                     IIGYFLEPLKTLLNYFSIVFYWGSGVIFPTWLMPKPILDILYYNPLLHVMELLRFNFF
                     ENYPLQDDYTYTYPIFCIICTSFVGLFLYYYNRQALTAVRRT"
     gene            2973..3635
                     /locus_tag="ACJFEZ_001181"
     CDS             2973..3635
                     /locus_tag="ACJFEZ_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0917302.1"
                     /translation="MIKVLNLTKSYPLFNGGRHYVFKDFTFEFPENCSIGLMGRNGAG
                     KSTLMKLLSGSELPDRGKIITNKKFSWPLGLSGAFQGSLTARDNAKFVARVYGYKGEE
                     LHEKVKFVEDFAELGKFFDEPMNTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPK
                     FREKSHKLYKERLSQSKVIMVSHNVAEIKEWCDKIIFMENGKATVYDDVDEGIAVYQG
                     KK"
     gene            3635..4750
                     /locus_tag="ACJFEZ_001182"
     CDS             3635..4750
                     /locus_tag="ACJFEZ_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HGG0917303.1"
                     /translation="MTKINTFFNKIKDLSIFDSFKIVWILMIFVIIYYILIAADRYVS
                     TITMSVKSTTGSTQASGVLSLLTATSNTSEDIKFLQGYIESLDMLKILDEKIHLKKLY
                     NEQYIDLFFSLSSSSSIESYLKYYQSRVKVHVDDKTGLLNVEVEGFTPESAHLIAKTI
                     MQESEKFINEISHKAAREQMSFAEEELIKYKERYQKAQNDLIAFQNKYGVFDPLKQAE
                     AKAGLVTQLESDIAQREAKLLTMQSYMNDSAPEIVTLKAEITALKKQLVKERSKISAD
                     NSSQKLNDLAAKFQDLTIEAGFAQSAYEAALKAYESARIEALRKIKQLVIVQTPDVPQ
                     SAKYPEKIYNILTAFIVLSLIFGVIKFVKMIIEEHKY"
     gene            4752..6383
                     /locus_tag="ACJFEZ_001183"
     CDS             4752..6383
                     /locus_tag="ACJFEZ_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HGG0917304.1"
                     /translation="MKKILILFLSCIFCFGAIDVSQISSSGNSSTTSFVQGLENNISK
                     SAPTQIPVFGAELFNGNFKNYTQRVYNPDYKIAVGDQISLKIWGAVEFEQILVVDSQG
                     NIFIPKVGAVNLLGVKNSALVSVIKAQVNKIYKNNVFVYADMNAYQNVSVFVTGSVNA
                     PGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNAVIKKIDLYDFLLKGQMDLF
                     PFRSGDVVLVGNVQSYVFVNGDVQRPFRFELANDIKTLFDLARVAGAKPIVTNAILRS
                     YGNDHKLEVSAYNKMQFSKVLLKTGDEVQFNPEYISQNISITVNGEHSGLKTLVVRKG
                     TTLEDVSRLIVANGQSDMNALQVFRKSVAKTQKDLINAQLKELETLALTSPSVTSQGA
                     AIKAEQAKLILEFIQRARELEPKGQIVIDKPKSYAEVILEEGDTINVPSKNNLIIVQG
                     EVTLPGAFVYNKGENLKYYINLAGGYGERADTSKVLVIRNNGKAQRYSGSVDMMPGDS
                     VLVLPKVESENLQIFSMLTQILYQIAVATNVVLNL"
     gene            6410..7357
                     /locus_tag="ACJFEZ_001184"
     CDS             6410..7357
                     /locus_tag="ACJFEZ_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HGG0917305.1"
                     /translation="MDALKIAKEVFATEAKAIEDLALNLDENFSKAIELMLHTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPDDILIAISNSGETEE
                     ILKIIPAIKKRKIPLIAMCGKENSTLVKQGDIFLNISIKEEACPLQLAPMSSTTATLV
                     MGDALAAALMKARNFRPDDFALFHPGGSLGRKLLTRVSDLMVSKNLPIVHPDTEFNNL
                     VDVMTSGKLGLCLVLENEKLVGIITDGDLRRALKANDKPRFDFKAKEIMSINPKVVDA
                     DAMASEAEEIMLKYKIKEIVVSKEDKVVGIIQLYAIGNV"
     gene            7358..8335
                     /locus_tag="ACJFEZ_001185"
     CDS             7358..8335
                     /locus_tag="ACJFEZ_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactosyltransferase-related protein"
                     /protein_id="HGG0917306.1"
                     /translation="MKYKYSVIIPIDLDLRPFDILKKVKSILKRSSDEVEIVFGHNDR
                     GSIFDKYLKRITKKNNVKLVSGKFYTRLICQSLLRNRAVEQCSSEFIYLMDVDCLFDE
                     ELSDGCINDIKSDKNPLIILFCLYLSKKGSREVFKHTREEMFDKYIAFRKDLYLHLAS
                     PSASIFMKKTDYFAVGGFDEEFMGHGGEDFEFMIKLALYKNVIKPTKDLMLNKFYKAP
                     LLSEGFRKYLAFNGLPYFFDKKIVFHLHHRRNKLFGYFKQYHKNSNLLQEKIKLDSSL
                     EENEESLIEFYEQLCKKYDVSIDKYSVLFDSYKPKKFTLDHILLFLKRL"
     gene            8336..>8670
                     /locus_tag="ACJFEZ_001186"
     CDS             8336..>8670
                     /locus_tag="ACJFEZ_001186"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0917307.1"
                     /translation="MLKLSNENKKFIKVILDGFFRIYLAKLFSNFKPKKHKGFTQYAI
                     ISAVYNVEKYLDDYFKSIINQRLDFKKNIFMILVDDGSTDNSAQIIKKYQKKYPKNIV
                     YLYKENGGQA"
BASE COUNT         2965 a         1168 c         1540 g         2997 t
ORIGIN      
        1 cttcgtgatg atagtatttg ttattgattt gttttacaat gagaggagta agaaaagagg
       61 tgataaaaag ggctaggaaa actgaagcaa aaattataac aaagcccgaa aataaaacac
      121 ttataagcgt aattaaaatt tgaacaaaat gaagagcgta aaaccatgcc caaaacgagt
      181 cttctccaac actaaataaa gaattaaaat aatcaagcaa aaaagaaaaa ccaaaaattg
      241 ccaaaaatat catcaaaata aaactaaaag taagtggaat taaggcaaat ttcaaaaatt
      301 gaagtgtgaa aaaatcctta atagcaagtc ttaaaatttt caaattacac ctttttataa
      361 tattcttcta attttttata aatggtatca aaatcaagct cttgctctaa aatttcagcc
      421 aatacttcat tatcttcttt tccgttccaa tctttcttat aagtgccttg tttatagcca
      481 ttgttttgtc taaaaatatt taaaatattt tttcctatgt aggttttata aagaatttca
      541 agattaagtc cgcatttaat cgctaggata aaataattag aaagtagctc tccaaggcta
      601 aatccaaagc cactgcattt atgaatgata agctctatgt cgtttaaaat gctataaaga
      661 tcattttcgc taggatttcc ctcttctttg caaaaatctt gaaaaacgct aactgagatg
      721 atttcattcg ctatggcttg gaaattttta tcctttttat ttgtatattc ttcaagtaaa
      781 agactgagga taaaatgcca aatatctacg atttccatac gaacattttc ccaattagta
      841 gggcttgaaa tatttttcca atgtttccaa gcaaaagaat ctataagttc ggcacattcc
      901 atataaatac aacgtctcca gctgatgagc tttccttcct tggtataacc ttcttcccaa
      961 tttaaaccat tagtttcatc attgagtttt tgttggagct tgagcatatt ttctaaaatt
     1021 tcaacatttt tcatcttgtg ccttttttaa ttttttatga tttattataa aatttaagcg
     1081 taaagattta aacctttttc tgcattattt tgattttctt tagctttttc ttgctgtttt
     1141 tcaagctgct ttttcatttg ctctaacact tcatctagta gttttttgct atcttcgagc
     1201 atggatgtat tgatatcttt atcattgctt tgattttgtt tgagtaaatc actaagttta
     1261 tttgtaaaat tattcatgat agcattttga tggttttcat catttggcgt tggcaataca
     1321 tttgccattt gcattgctga ttctatgatt tcttttggtt ttaattctcc tactttagaa
     1381 tttgccaaaa agtcttttat catgggttcg acttctttca ttgcattttt tatctcatca
     1441 agatcagctt gggtgagttt agagccttca aaagtgaagc taaaaccata ttgacgttta
     1501 agattaagac ttttaccttc ttcatcattg ctataactta agctttgatt atcatacata
     1561 gacaaggcta ggtgtttgcc actttttgtt gtatagtcca ttgaaaaact ttgatttttg
     1621 ctcgcatcaa tttgcatttt actccccttg tgttgatata cttaaaatga aaaatcggtt
     1681 attttttaaa aaaatttagt ataattttac ccaatggatg aaagaatttt agaatttata
     1741 aaaaatgagc agcttttatc ttgggctatg agtgatgaaa aaggtgttta tatagccaat
     1801 gctttttata tctttgatga aaaaaattta gcttttatca tcgcctcaca tgaagataca
     1861 aagcatataa aattagctag cgaaaatcct agcatagcac taaatatagc taaagaaagc
     1921 aagatagctt ttttaaaagg catccaagct aaggccaaat ttaaaagcgc aagcaaggag
     1981 caaataaaaa tttatttttc aaaatttcct tttgcaaaat tggataagag tgcaaaaatt
     2041 tatgctttag aacttgattg gctgaaattt acaaacaatg ctttaggatt tggcaaaaag
     2101 cttgaatttt ataaagataa aattttatga tttgtttaaa aaaacgagtt ataattatag
     2161 tttatgtaaa aattttttaa gtatagaaaa taaatgttaa atgtaattca cgctttgttt
     2221 tttagagaat taaagactag atttggtaaa aataaatatt tgggttattt ttgggttatt
     2281 ggcgagccta tgagtgtcat tttaatactt actaccattg tgactattct cagagaatac
     2341 catcatcaac taatgcctga agggatttct gtttttatgt ttttaatttc gggtatagtt
     2401 ccttatttta tgtttagaag tatagtcact cagcttatga atggcatagg agcaaattta
     2461 gctctttttg cttacaaacc tgtaaaaccc atacatgttt ttatcgctag gactttgctt
     2521 gagttttgta tttattttgt tatatttgta gcagtattgt ttatagtggg ttggtttttt
     2581 agattagaag ttatccctag gcatttttta agcgtgatga tttgtatatt tttgcttatg
     2641 tgttcgggtt ttgctttggg tatggttttt gctatcattg gatatttttt agagccctta
     2701 aagactttgc ttaattattt tagtatagta ttttattggg gttcgggtgt tatctttcct
     2761 acttggctta tgccaaaacc tattcttgat atattatatt ataatccttt gcttcatgtt
     2821 atggagcttt taagatttaa tttttttgaa aattatcctt tgcaagatga ttatacttat
     2881 acttatccta tattttgtat catatgcact tcttttgtgg gacttttttt atattattac
     2941 aatagacaag ctttaacagc agtgagaaga acatgataaa agttttaaat ttaaccaaat
     3001 cttatccttt atttaatggc ggaaggcatt atgtttttaa agattttact tttgaatttc
     3061 ctgaaaattg tagtataggt ttaatgggta gaaatggtgc aggaaaatca actttaatga
     3121 agcttttaag tggctctgag cttcccgata gaggaaaaat cattaccaat aaaaaatttt
     3181 cttggccctt gggtctaagt ggagcttttc aaggatcctt aacagctaga gataatgcta
     3241 aatttgtagc tagggtttat ggctataagg gtgaagagct tcatgaaaaa gtcaaatttg
     3301 tagaagattt tgcagagctt ggcaaatttt ttgatgagcc tatgaatact tattcttcgg
     3361 gtatgagtgc taggatagct tttgggctta gtatggcttt tgattttgat tattatctaa
     3421 ttgatgaggc aggagctgta ggagatccta aatttagaga aaaaagccat aaattatata
     3481 aagaaagatt gagccaatct aaagtgatca tggtttcaca caatgtggct gaaattaaag
     3541 aatggtgtga taaaattatc tttatggaaa atggaaaagc tactgtttat gatgatgtag
     3601 atgagggcat agccgtctat caaggaaaaa aataatgaca aaaataaata cattttttaa
     3661 taaaattaaa gatctaagta tttttgattc tttcaagata gtatggatct tgatgatttt
     3721 tgtgatcatt tattatattt taattgccgc tgatcgttat gtaagtacta tcaccatgag
     3781 tgtaaaatca actactggaa gcactcaagc aagcggggtt ttgtcgcttt taaccgcaac
     3841 ttccaatact agcgaagata tcaagttttt acaaggctat atagaatcgc ttgatatgtt
     3901 aaagattcta gatgaaaaaa ttcatctaaa aaaactttac aatgagcaat atatcgattt
     3961 attttttagc ttatcaagtt ctagctctat agaaagttat ttaaaatatt atcaaagccg
     4021 cgttaaagta catgtggatg ataaaacagg acttttaaat gtcgaggttg aaggatttac
     4081 tccagaatct gcgcatttaa tcgccaaaac cattatgcaa gaaagtgaaa aatttatcaa
     4141 tgaaatttca cacaaggcag caagagaaca aatgagcttt gcggaagaag aattgataaa
     4201 atataaagaa cgctatcaaa aagcgcaaaa cgatttgatt gcctttcaaa ataagtatgg
     4261 agtttttgat cctctaaaac aagcagaagc taaagccggc ttagtaactc aacttgaatc
     4321 agatatcgct caaagagaag ctaagctttt aaccatgcaa agctatatga atgatagcgc
     4381 acctgaaatt gtaaccctaa aggctgaaat cactgcttta aaaaaacaat tagtcaaaga
     4441 aagatctaaa atttcagccg ataattcttc tcaaaaactc aatgatctag ctgctaaatt
     4501 tcaagatcta accatagaag caggctttgc tcaaagtgct tatgaggcgg ctttgaaagc
     4561 ttatgaaagt gcaaggatag aagctttaag aaagattaaa caactagtta tcgttcaaac
     4621 ccctgatgta ccccaaagtg caaaataccc tgaaaaaatt tataatatct taacagcatt
     4681 tattgtatta tctttgattt ttggggtgat taaatttgtt aaaatgatta tagaggagca
     4741 caagtattaa aatgaaaaaa atattaattt tatttttaag ttgtattttt tgttttggag
     4801 ctatagatgt ttcacagatt agctcaagtg gaaattctag cacaactagc tttgttcaag
     4861 gattagaaaa caatatcagt aagagtgccc ctactcaaat tcctgtattt ggcgcggaat
     4921 tatttaatgg aaatttcaaa aattacactc aaagggttta taatcctgac tataaaatcg
     4981 cagtaggaga tcaaatcagt cttaaaattt ggggtgcggt tgaatttgaa caaattttag
     5041 ttgtggattc tcaaggaaat atttttatcc ctaaggtagg agcggtaaat ttgctagggg
     5101 taaaaaatag tgctcttgta agtgtgatta aagctcaggt aaataaaatt tataaaaata
     5161 atgtttttgt ttatgcggat atgaatgctt atcaaaatgt tagcgttttt gtcacaggca
     5221 gtgttaatgc tccagggctt tatcaaggtc ttagctcgga ttctgtgatc cagtatcttg
     5281 ataaggcagg cgggataaat ttagaatacg gaagttttag agatattcaa attttacgca
     5341 ataatgctgt gattaaaaag atagatttgt atgatttttt acttaagggt caaatggatc
     5401 tttttccttt tagaagtggc gatgtggttt tggtgggcaa tgtccaaagt tatgtttttg
     5461 taaatggaga tgtgcaaaga ccgtttcgct ttgagcttgc aaatgatatt aaaactttat
     5521 ttgatttagc ccgcgtagca ggcgccaaac ctatagtaac taatgcgata ctaagaagtt
     5581 atggaaatga tcataagctt gaagtaagtg cttataataa aatgcaattt tctaaagttt
     5641 tattaaaaac gggtgatgag gtgcagttta atcccgaata catttcgcaa aatatcagta
     5701 taacagtcaa tggcgagcat agcgggctta aaactttggt agttcgaaaa ggaacgacgc
     5761 tagaggatgt ttcaagactg attgtagcaa atgggcaatc ggacatgaat gccttgcaag
     5821 tttttagaaa aagtgttgcc aaaactcaaa aagatcttat caatgctcag cttaaagagc
     5881 ttgaaaccct tgctttaact agtccttcag tgacttctca gggtgcggct atcaaagcag
     5941 aacaagcaaa attgatactt gagtttatcc aaagagcaag agaattagag cctaaggggc
     6001 aaattgttat cgataaacca aaatcttatg cagaggttat actagaagag ggtgatacta
     6061 tcaatgtccc tagtaaaaac aatcttatca tagtccaagg tgaggttact ttaccaggag
     6121 cttttgttta taataagggt gaaaatttaa aatactatat caatcttgca ggaggttatg
     6181 gagaaagagc agatacctcc aaagtacttg ttatacgcaa caatggcaag gctcaaagat
     6241 atagtggaag tgttgatatg atgccgggcg attctgtctt ggttttgcct aaggttgaga
     6301 gtgagaattt acaaattttt tctatgctaa cgcaaatttt atatcaaatt gccgttgcaa
     6361 cgaatgtagt attgaattta tgatgatttt aggatgatat acaatgaaaa ttgatgcttt
     6421 aaagatagct aaagaagttt ttgcgacaga ggctaaggct atagaggatt tggctttaaa
     6481 tttggatgaa aatttttcta aagccataga acttatgctt catacaaagg ggcgttgtat
     6541 agtcagtggc atgggaaaat caggtcatat aggggctaag atagctgcaa ctttagcaag
     6601 tacaggaaca cctagctttt ttatccaccc aggagaggct ttgcatggag atcttgggat
     6661 gcttactcct gatgatattt tgatagctat ttcaaattca ggtgaaactg aagagatttt
     6721 aaaaatcatc cctgcaatta aaaaacgcaa aatccctctt atagctatgt gtggaaagga
     6781 aaactctacc cttgtaaaac aaggggatat ttttttaaat atatccataa aagaagaagc
     6841 atgtcctttg caacttgctc cgatgtcttc gacaaccgct actttagtaa tgggtgatgc
     6901 tttagcagca gctttgatga aggctagaaa ttttagacct gatgattttg ctctttttca
     6961 tccaggtgga agtttgggta gaaagctttt aactagggta agcgatttaa tggtatcaaa
     7021 aaatcttccc atagttcatc ctgatactga atttaacaat cttgttgatg tgatgacaag
     7081 tgggaaatta ggactttgtt tggtgcttga aaatgaaaag ctagtaggta ttataacaga
     7141 tggggatttg cgccgcgctt taaaggctaa tgataaacca agatttgatt ttaaagctaa
     7201 agagatcatg agtataaatc ctaaagtggt cgatgctgat gctatggcaa gtgaagcaga
     7261 agagatcatg ttaaagtata agatcaaaga aattgtcgtt tctaaagaag ataaagtggt
     7321 aggcatcata cagctttatg cgatagggaa tgtgtagttg aagtataagt atagtgtcat
     7381 tattcctatt gatttagatc ttagaccttt tgatatacta aaaaaagtta aaagtatttt
     7441 aaaaagatcc agtgatgagg tcgagatcgt ttttgggcat aatgatcgcg gaagtatatt
     7501 tgataaatat cttaagagaa tcactaaaaa aaataatgtt aaattagttt cagggaaatt
     7561 ttatacaaga ttgatttgtc aaagtttgct tagaaacaga gcggtagaac aatgctcgag
     7621 cgaatttatt tatcttatgg atgtcgattg tttgtttgat gaagaattaa gcgatggttg
     7681 tattaatgat atcaagagtg ataaaaatcc tcttataatt ttattttgcc tatatctttc
     7741 aaaaaaaggt tctagggaag tttttaagca tactagagaa gaaatgtttg ataaatatat
     7801 cgcgtttaga aaagatttgt atttacattt agcttctccg agtgcaagta tctttatgaa
     7861 aaaaactgat tattttgctg tgggtggctt tgatgaagaa tttatgggtc atggtggaga
     7921 agattttgaa tttatgataa agcttgcact ctataaaaat gtcattaaac caactaaaga
     7981 tttaatgctt aataaatttt ataaagcacc acttttaagt gaaggtttta gaaaatatct
     8041 cgcttttaat ggtttaccat atttttttga taaaaagatt gtttttcacc ttcatcatag
     8101 aagaaataaa ttattcggat actttaaaca atatcataag aattcaaatc ttttacaaga
     8161 aaagattaaa cttgattcta gtctagaaga aaatgaggaa agcttaatag aattctatga
     8221 gcagctttgt aaaaaatatg acgtaagtat agataaatat agtgttttat ttgatagtta
     8281 taaaccaaaa aaatttactt tagatcatat tttacttttt ttaaaaagac tgtagatgtt
     8341 aaaactttca aatgaaaata aaaaattcat taaagttata ttagatggtt tttttagaat
     8401 atatcttgcg aaactctttt ctaattttaa acccaaaaaa cacaaaggct tcactcaata
     8461 cgctataata tcagctgtat ataatgtaga aaaatattta gatgattatt ttaaatccat
     8521 aataaaccaa agacttgatt ttaaaaaaaa tatttttatg atacttgtag atgatggctc
     8581 tactgataat tctgcacaaa taatcaaaaa ataccaaaaa aaatatccta aaaatatcgt
     8641 ctatctttac aaagaaaatg gtgggcaagc
//
LOCUS       DBBXRO010000069         8309 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.070, whole genome shotgun sequence.
ACCESSION   DBBXRO010000069 DBBXRO010000000
VERSION     DBBXRO010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8309
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.070"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(141..1580)
                     /gene="aldA"
                     /locus_tag="ACJFEZ_001187"
     CDS             complement(141..1580)
                     /gene="aldA"
                     /locus_tag="ACJFEZ_001187"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HGG0917308.1"
                     /translation="MTTYLNYIDGKFIPHNGEFIEVLNPATKEVISRVASASLEDTKR
                     AIEAAKKAQKVWEAKPAIERANHLKEIASLIRKNANFLTEVLMQEQGKTRVLASIEIN
                     FTADYMDYTAEWARRYEGEIIQSDRANEHIYLYKSAIGVIGGILPWNFPFFLIARKMA
                     PALLTGNTIVIKPSSETPNNAFEFAKLVSQSSLPKGVFNLVAGKGSVVGYELSSNENI
                     GMVSLTGSVEAGTRVMEAAAKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICN
                     NGQVCNCAERAYVHTSVYDEFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQAGVDNALA
                     MLQRATAKGAIVECGGKITDTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIAKFDTL
                     DEAIDMANDCEYGLTSSIYTQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKS
                     GIGGADGKHGLEEYLATHVVYLQYNTNKQ"
     gene            complement(1594..1911)
                     /locus_tag="ACJFEZ_001188"
     CDS             complement(1594..1911)
                     /locus_tag="ACJFEZ_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HGG0917309.1"
                     /translation="MQRYGQIIKIKKEKIEEYKNLHAKPYEGVCEMIKKCNMQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDESTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            complement(1887..2681)
                     /locus_tag="ACJFEZ_001189"
     CDS             complement(1887..2681)
                     /locus_tag="ACJFEZ_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HGG0917310.1"
                     /translation="MQKIFDAHLHLWDLDKMPISWLKGNEKLEQNYDFFRAKEEYEGF
                     EFLGAMYVETNSDDLEKEALFALEQKKLHNLLLCLADLKYKEELSSFREVMHTSKKEA
                     KRLFEADFEEKIEILKTFNIPFEACMKNEELSFLEKFLNKNPNLKVVLNHLGSPKIDR
                     LNEYKKDLNLLKKFPNLYIKLSVPDDFSEQTSKEFIYELFAFFKENFSEDKFIFGSNY
                     PVAKIAPAKWAKLIIESKIFKNLNKIFYQNALSIYKEDRCKDMAKS"
     gene            complement(2683..3924)
                     /gene="fucP"
                     /locus_tag="ACJFEZ_001190"
     CDS             complement(2683..3924)
                     /gene="fucP"
                     /locus_tag="ACJFEZ_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015150 - fucose transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0015535 - fucose:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015756 - fucose transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HGG0917311.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANKYSYKMGIIFGLALYAVGALLIIPATNLASFHL
                     FLFAFFVLACGIGSLETSANPYMVKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASAEQIEAALLANMGNVQLVYVGIAAIVILILIAFVLNKLPEGSAVSDD
                     YKQKDDSKPIHVFKHRHFNLGLLAQFSYIANQVAAGAFFINYVVDHNEGLKDAQAAYY
                     FSIALVAFMLGRIVSTPLMKVIKGEKILGLYSLINVLICFGLYFTSGFLSTILLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPLIIGFINDHYGTGMGYL
                     AMAPLFLYVAWYGFVGSKIKA"
     gene            complement(3935..4723)
                     /locus_tag="ACJFEZ_001191"
     CDS             complement(3935..4723)
                     /locus_tag="ACJFEZ_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HGG0917312.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWAMEGGIPVVFSRSMPKE
                     HDEELKNLCKSYEFYEIDLKNYEQIEELIKKVVTKHGGIYALVNNAGANDNLHIENTS
                     TKDLIKSYENNLFHYYAMAKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     IGFTREWACAFAKDSVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKTIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEI"
     gene            complement(4738..6009)
                     /locus_tag="ACJFEZ_001192"
     CDS             complement(4738..6009)
                     /locus_tag="ACJFEZ_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917313.1"
                     /translation="MGHLKLTKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEMDAGISETAYALGAGIFFVGYALFEVPSNLLLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGETSFYILRFFLGLTEAGFSPGIILYLSYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYASNMYFKNWQWMFLIEGGITVLVGVFCLFYLDSHPKDAKWLDVKEKTVL
                     LKNIEICNSKAKDYSIKDIFKNILVWKFVFVYFCIQLSIYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKRSWNLYAILFLLLASLSMIASTFVANLAP
                     FLFFISLAVIGFIVIQPIFWNLPTQVLKGKGGAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLITLALIAVLGVLILVHLKMTLN"
     gene            complement(6019..7185)
                     /locus_tag="ACJFEZ_001193"
     CDS             complement(6019..7185)
                     /locus_tag="ACJFEZ_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HGG0917314.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIVGLGCEVIQAKVVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIEKGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILGY
                     ENLVKSFRADIRGANPSPGNIAGGLSTIEEKSLGCVYKAGTRTLMDVIDYAKPIVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAEINEQNDFSVWRLATTC"
     gene            complement(7188..7451)
                     /locus_tag="ACJFEZ_001194"
     CDS             complement(7188..7451)
                     /locus_tag="ACJFEZ_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HGG0917315.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            complement(7448..>8309)
                     /locus_tag="ACJFEZ_001195"
     CDS             complement(7448..>8309)
                     /locus_tag="ACJFEZ_001195"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - obsolete organic substance
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HGG0917316.1"
                     /translation="DDGSINEKEFIHYCEFGISKGLNGLFCNGSAGDSQALSIEEQVK
                     LMRLTKEVAKNNVPIITGIASTIYQNTFTLAQKAYEIGLDALLLAMPYYYKLSEDALF
                     EYVKDLSSKVKLPLYVYNIPLFAPALSLKFIERVSKLDNVVGIKDSSGDALLLNHILD
                     VLPSNFDVFVGREEFYVGALLAGAKGSMTSIGGVFPELMSEIYKSINEKNIGRALLIQ
                     KSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPATKEELNTRFDEAKELIK
                     TIEKETGIKL"
BASE COUNT         2795 a         1677 c          996 g         2841 t
ORIGIN      
        1 actcatttta gacaaaatga aaaattccaa aattgatttt aagaaattac taaaaaagtg
       61 tttaatccat agttataaag catcatactt gattccaaga ttataataac tcctatctaa
      121 aaatttagat aggataaaaa tcattgttta ttagtattat actgcaaata taccacatgg
      181 gtagctaaat attcttcaag accatgtttt ccatcagctc cgcctatgcc actttttcta
      241 aagcctgcat gaaaaccttg catagcctca aaattttcac gattaatata agtttcacca
      301 aatttaattt ctctgctagc tctcattgct atatctaaat tttgtgtata aatagaactt
      361 gtaagaccat attcacaatc atttgccata tcaatagctt catcaagtgt atcaaattta
      421 gcaataggta aaatcggagc aaaaatttct ttttgcatga tctcatcttc gtgtttaaca
      481 ttagtaagaa cgcttgcggg aaaataatac ccacttgtat cagtgatttt tccaccgcat
      541 tctacaatcg ctcctttagc tgtagctctt tgaagcattg ccaaagcatt atcaactcct
      601 gcttgattga ccaatggtcc catatcaaaa tcacctttta aggtatttcc aacacttact
      661 ttactcatgg cttttacaaa tttgtctaca aattcatcat aaacgcttgt atgcacataa
      721 gctctttcag cacaattaca aacttgtccg ttattgcaaa ttctacttgc tttaatcgct
      781 tctactgcta aatcaatatc cgcatctttg cacactatag ctggcgcctt tccaccaagt
      841 tctaaagaaa ctttgataat atttttagct gcagcttcca ttactctagt ccctgcttca
      901 acacttcctg taagacttac catacctata ttttcattgc ttgataattc atatcctact
      961 acactgcctt tacctgcaac taagttaaaa acaccttttg gtaaagaact ttgcgaaaca
     1021 agctttgcaa attcaaaagc attgtttgga gtttcactgc ttggctttat aacaatagta
     1081 tttcctgtta gtaaagcagg tgccatcttc cttgcgatta agaaaaatgg aaaattccaa
     1141 ggtaaaattc caccaattac cccaatagca cttttatata aatatatatg ctcattagcc
     1201 ctatcgcttt gtatgatttc accctcatat cttctagccc actcggccgt ataatccata
     1261 taatctgctg taaaattaat ctctatgcta gccaaaactc tggtttttcc ttgctcttgc
     1321 attaaaactt cggttaagaa attagcattt ttgcgtatta aactagctat ttcttttaaa
     1381 tgatttgctc tttcaatcgc tggtttagcc tcccaaactt tttgtgcttt tttggctgct
     1441 tcaatcgctc ttttagtatc ttctaaagaa gcgctagcta ctcttgaaat cacttctttg
     1501 gtagccggat ttaaaacttc gataaattct ccattatgtg ggataaactt tccatcaata
     1561 taatttaaat aagttgtcat tttttctcct tttttagtct aagtgaaata cttcttccat
     1621 atttagccat ttttgtcctg catagcctaa agatatttga caaggatctg ttactttcca
     1681 ccatttttgt gtgctttcat ctcttgccat tttagccatg tctgcttcaa aatcagcacc
     1741 tacatattca aaatatgcaa ataaatattc tccgaacaaa taaatggaat aattttgcat
     1801 attgcacttc ttaatcatct cgcaaacccc ttcataaggc tttgcgtgaa gatttttata
     1861 ttcctctatt ttttcctttt ttatctttat gatttggcca tatctttgca tctatcctcc
     1921 ttgtaaattg ataaagcatt ttgataaaat atcttattta agtttttgaa aattttactt
     1981 tctatgatga gtttagccca cttagctgga gctatttttg ccacaggata attgctacca
     2041 aatatgaatt tatcttcact aaaattttct ttaaaaaaag caaaaagctc ataaataaat
     2101 tcctttgagg tttgttctga aaaatcatct ggaaccgaaa gcttaatata taaatttgga
     2161 aattttttca aaagatttaa atctttttta tactcattta aacgatctat ttttggactt
     2221 cctagatgat ttaaaaccac ttttaaattt ggatttttat ttaaaaattt ttctaaaaaa
     2281 ctgagttctt catttttcat acaagcttca aaaggtatat tgaaagtttt taaaatttct
     2341 attttttctt caaaatctgc ttcaaatagt cttttagctt cttttttact cgtgtgcatt
     2401 acttccctaa aagagctaag ttcttcttta tattttaaat ccgctaaaca aagcaaaaga
     2461 ttatgaagct ttttttgctc taaagcaaat aaagcttcct tttctaaatc atcgctattg
     2521 gtttcaacat acatagcacc taaaaattca aatccttcat attcttcttt tgctctaaaa
     2581 aaatcataat tttgctctaa tttttcattg ccttttaacc atgaaatagg cattttatcc
     2641 aaatcccaaa gatgcaaatg tgcatcaaaa atcttttgca ttttaagcct ttatctttga
     2701 gccaacaaaa ccataccaag ccacatataa aaataaaggt gccattgcta aataccccat
     2761 acctgtgcca taatgatcat taataaaacc tataattaaa ggcataatcg ctccacctac
     2821 tatactcatt acaagcaaag aaccgcctag ttttacttga tttaaaggca aattctttgt
     2881 tgcaactgca aaaatagtag gaaaagagat agacataaag aaaaataaag caattaaaag
     2941 aatagtactt aaaaaaccac tcgtaaaata caagccaaag catatgagta cattaattaa
     3001 agaataaagt cctaaaattt tctcaccttt aatcactttc atcaaaggag tagaaacaat
     3061 acgtcctagc ataaatgcaa ccaaagctat agaaaaataa taagcagctt gcgcatcttt
     3121 taatccttca ttatgatcta ctacataatt aataaaaaac gcccctgctg caacttgatt
     3181 tgctatatat gaaaattgcg ctaaaagtcc taaattaaaa tgtctgtgtt taaaaacatg
     3241 tataggctta gaatcatctt tttgtttata atcatcactt accgcacttc cttctggaag
     3301 cttatttaga acaaaagcaa ttaaaatcaa aataacaata gcagcaattc ctacataaac
     3361 aagctgaaca ttacccatat tggctagcaa tgcagcttcg atttgctccg cactcgcacc
     3421 ctcttcttgc ttggtaatag ataaaaataa agctccacct ataataggtc ctacaaattg
     3481 tcccaaacca ttaaaacttt gtgcggcatt gattctaaaa cttgcatttt tttcatctcc
     3541 aagttttacc atgtaaggat ttgcactagt ttctaaagaa ccaatgccac aagctaaaac
     3601 aaaaaacgca aataaaaaca aatgaaaaga agctaaattt gtagcaggta taataagcaa
     3661 agcccctaca gcataaagtg ctaaaccgaa aataatcccc attttataag aatacttatt
     3721 ggctatataa cccgctggca aggctatgat aaaataagct ccaaaataag caaattgtaa
     3781 aaatccactt tcatgctggc taatgtgaag atgattttga aaatttttat tcattacatc
     3841 gataagccca taacttactc cccataaaaa gaaaagagaa gtcaccaaaa caatagctat
     3901 ttttatattc ttagaatcag tcatttttta ctccttaaat ttcatcccaa ttcaatgctc
     3961 tatccaaatg aacataacct ccatctggca ttaaaatttg tcctgtagta tgtgaagcca
     4021 aaggactaag tgtaaaaact gcagtatttg caatctcttc tatagtggta aaacgatgtc
     4081 ccaaaggtat agtttttgcg attttctcat attgctcttt agggttaggg aaattttgca
     4141 accatttttc ataaagagga gtcataactt cagctggtgc tatggcattt actctaacac
     4201 tatctttagc aaaagcacaa gcccattccc tagtaaaacc tatttgagca gcttttgccg
     4261 aagcataagc tgaagttctt ccttgtcctg tgatacctgt tttactcact atatttaaaa
     4321 tactgccttg ctctttttta atataaggca aacactcttt tgccatagca taataatgaa
     4381 aaagattgtt ttcgtaagat ttaatcaaat ctttagtgct tgtgttttca atatgcaaat
     4441 tatcatttgc acctgcatta tttacaaggg cataaattcc accatgtttt gtaacaactt
     4501 tttttataag ttcttcaatt tgttcataat tttttagatc aatttcataa aattcatagc
     4561 ttttgcataa attttttaat tcttcgtcgt gctctttagg catagatctt gaaaaaacta
     4621 caggaattcc accctccata gcccataatt tagcaatacc ataaccaatg cctttagcac
     4681 cacctgtaat aatacaaacc ttatttttaa tttttaaatc catttattct cctttatcta
     4741 atttaaagtc atttttaaat gcactaatat caatacgcct aaaactgcta ttaatgctag
     4801 tgttataagt ccaaactcaa ccccaaaatg attttctatg tatgttttta aagtcggtgc
     4861 gacaaaacca cctaaatttc ctaaagaccc tataagtgcg atagcagctg caccaccttt
     4921 tccctttaaa acttgagttg gtaaattcca aaatataggc tgaattacga taaaacctat
     4981 aacagccaag ctaataaaaa ataaaaatgg tgctaaattc gcaacaaaag tcgaagctat
     5041 catgcttaaa cttgctaata ataaaaataa aatcgcatat aaattccaag agcgtttttt
     5101 atccgccaat gaggtaaata ttggcaaggc gataaaaaca aaaatccaag gaatagcatt
     5161 taaaagccct acttcaaaac ccacatttat ttgcaatatt tgagctattt tacttggtaa
     5221 ataaaaaaga acgccataaa tgcttaattg tatgcaaaaa taaacaaata caaatttcca
     5281 tactaaaata tttttaaaaa tatccttgat agaataatct tttgccttgg aattacaaat
     5341 ttctatattt tttaataaaa cagttttttc ttttacatcc aaccatttag catcttttgg
     5401 gtgagagtca agataaaaca aacaaaaaac acccaccaaa acagtaattc cgccctcgat
     5461 taaaaacatc cactgccaat ttttaaaata catatttgat gcataatcaa gtataaaacc
     5521 actgattaaa gaaccaaaaa caaaagctat aggcacaccc atttgataaa ttccataagc
     5581 ttttgatcga tatatagctg gaaaaaaata actaagatac aaaataatcc ctggactaaa
     5641 acctgcttca gtcaacccta gaaaaaacct taatatataa aaacttgttt ctccttgtat
     5701 aaaaatcata gccatagtta caagtcccca agtgatcatt atgcgactta accaaatctt
     5761 agctcctaat ttatgcaaaa gtaaatttga aggcacttca aacaaagcat aaccaacaaa
     5821 aaatatccca gcacccaaag catacgcagt ttcgctaata cccgcatcca tttcgatgtg
     5881 agatttcaca aaactaatat ttgtcctatc aagcatagaa agacaaaaca tcaaaacaat
     5941 taaaggtaga atacgccaag atattttctt acaaaccagc tctaattttg ttaattttaa
     6001 atgccccatt tttagtccct aacaagttgt agcaagtctc caaactgaaa aatcattttg
     6061 ctcgtttatt tcagctttta ccaattctcc atctgaaatt cgcacgatta attctataag
     6121 ctcatcacgc acttcttctt ttgtttttac cccatctata atgcttcctg cgttaatatc
     6181 aatagcatca ttcatatttt cataacaaaa agtattagaa ctcattttaa ttgtaggcac
     6241 aatagcagaa cccgttggag tgccacgacc tgtagtaaaa acacaaatat ttgctccacc
     6301 tgcaaccata gcactaagtt gttctatatc attacctggc gtattcataa aagtaagtcc
     6361 tttagaaact ataggtttgg cataatcaat cacatccatt aaggttctgg ttcctgcttt
     6421 ataaacacaa cctaaggatt tttcctctat agtactaagc ccacctgcaa tgtttcccgg
     6481 actagggttt gctcctcgaa tatcagcacg aaaagacttg actaaattct cataacctaa
     6541 aatcttatca tatacctttt tagctatttc atcgtttttt gctctcttag caagtatagc
     6601 ttcacaacct ataagctctg tagtttctgc taaaattacc gcaccaccct catcaatgac
     6661 aaaatcactc aaacttccta aagcaggatt agcactaagt ccgctatagc tatcacttcc
     6721 accgcattct gtgcctaaaa tcaaatcact aaaatctcct tcactttttt gtaactttgc
     6781 ggcactttca agcatttcat tgactatttt aatacctttt tcaatagtat ttttactacc
     6841 accgcattct tgtatcacta aatattcaac ctttttataa ggcgttgctt ctttgatttt
     6901 ttctgctact actttagctt gtattacctc acaaccaagc cctacaatta aaacaccaaa
     6961 aacattggca ttgctcccat gacctatcaa aacatctctg gtttgcaaag catcaaattc
     7021 aagctgggag caaccatgct gatggttgat ataaaccgct ccattacatt ttctagctat
     7081 attttcacac actttattag cacaatgtac acttggtatg ataatgactt tatttcttaa
     7141 gccaaatttt ccatcttctc ttctatagcc cattatcttt ttcatattta ttccttatct
     7201 ccacgacctc taattcccgc agtattatgg atatgcaccc attcccctgt actaatatcg
     7261 caacttgcac tagctatagc ttctgcgtat ttgataataa tttcatcttt ttttatatcc
     7321 tttagtgcaa atttatgtcc gcttgcaata tcatttaaaa gctcaatatt tgccactttt
     7381 tcgccttttt taaagtcacg caaagctgtg gcaacattgt ctttttcatt gactataata
     7441 tatcctttca tagttttata cctgtttctt tttctatagt tttaataagc tcttttgctt
     7501 catcaaagcg agtgtttaat tcttcttttg tagcaggtga taaaggatga atactagcat
     7561 ttacaaattc aaatcctctg gcctttaaaa gcaaagcaaa acccatagga aaagctatgc
     7621 tcataccaaa tcttatggcc tttaataaac ttttttgtat tagcaaagct ctgcctatat
     7681 ttttttcatt gattgatttg taaatttcgc tcataagttc tggaaaaact ccacctatgc
     7741 tagtcataga accttttgca cctgctaata atgcacctac ataaaattct tctcttccta
     7801 caaaaacatc aaaattgcta ggtagcacat ctaaaatatg atttaaaagc aaagcatctc
     7861 cactactatc ttttatacca acaacattat caagctttga aactctttct ataaatttta
     7921 agcttagtgc tggtgcaaaa agaggtatat tataaacata caagggaagt ttcactttag
     7981 aagatagatc ttttacatat tcaaaaagcg catcttcact taatttataa taataaggca
     8041 tagcaagcaa caaagcatca agacctattt cataagcttt ttgtgccaaa gtaaaagtat
     8101 tttgataaat tgttgaagca atacctgtaa taatgggcac attatttttt gcaacttctt
     8161 ttgtgagtct cattaattta acttgttctt caatgcttaa agcttgagaa tctcccgcgc
     8221 ttccattaca aaataatcca tttaaacctt tagaaatacc aaattcacaa tagtgaataa
     8281 attctttttc attaatactt ccatcatct
//
LOCUS       DBBXRO010000070         8235 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.071, whole genome shotgun sequence.
ACCESSION   DBBXRO010000070 DBBXRO010000000
VERSION     DBBXRO010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8235
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.071"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..767)
                     /locus_tag="ACJFEZ_001196"
     CDS             complement(<1..767)
                     /locus_tag="ACJFEZ_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HGG0917317.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDSGANLVVLGEYVLNSF
                     FTELLAMPKSMIKEQSEAKKESLIRLAKKHELEIIAPYISVETKGYKKLCLKVAPNHI
                     KTYEQQVLMPYNHWNEEKFFSNKINKGNLKLFTFNHDKLKCALLFGFEVHFDIFWQQI
                     MAKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTNILRVNRIGTTKDEWSFYGDSML
                     INAFGEIESRLGSEEEMLIVEPKKADEARKIWAFDKIV"
     gene            complement(760..933)
                     /gene="xseB"
                     /locus_tag="ACJFEZ_001197"
     CDS             complement(760..933)
                     /gene="xseB"
                     /locus_tag="ACJFEZ_001197"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HGG0917318.1"
                     /translation="MSFEENLKNANESLEKLNDKELSLDESVKIYKEGLKSIEKARLA
                     LEKARLEVEHIDE"
     gene            complement(930..2384)
                     /gene="guaB"
                     /locus_tag="ACJFEZ_001198"
     CDS             complement(930..2384)
                     /gene="guaB"
                     /locus_tag="ACJFEZ_001198"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HGG0917319.1"
                     /translation="MNIIKRALTFEDVLLRPCYSEVLPKQVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDITSQVREVKRVKKSESGVIIDPIFVGPK
                     ASVAEALEIMAEYRISGVPVIDSDRKLIGILTNRDLRFENDYSNLVENIMTKAPLITA
                     PKGCTLDDAEKIFSKNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDSFGRLRV
                     AAAIGVGQMDRVDALVEAGVDAVVLDSAHGHSKGIIDTVKSVKEKYPNLDLIAGNIAT
                     AAAAKALCEAGADAVKVGIGPGSICTTRIVSGVGVPQISAIDECAMEAKKYGVPVIAD
                     GGIKYSGDIAKALAAGASSIMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSIGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIKNVVHQLLGGLRSSMGYVGAKDIEDFQ
                     ARAEFVEITSAGLKESHVHDVTITHEAPNYKVNQ"
     gene            complement(2381..3748)
                     /gene="gatA"
                     /locus_tag="ACJFEZ_001199"
     CDS             complement(2381..3748)
                     /gene="gatA"
                     /locus_tag="ACJFEZ_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HGG0917320.1"
                     /translation="MITLKEALKYSKEELENLKKELNDKAKKENKIGAYIEQFLSKDL
                     SDGGEGIPIAIKDNISVKDWELTCASKILQGYVAPYDATAIKNLRSKGFSPYGRTNMD
                     EFAMGSSSATSFYGKTLNPLNFARVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     KVDFTPTAPNLNAEKKLRIAVIENYVNEASAEVKAALLKSIEMLKANGHEIVYKNMLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSQNTENLKDMYINTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVGEDKEGLNISAQLICKAYDEQTLLDGALSLEKI
                     IKENK"
     gene            complement(3745..3867)
                     /locus_tag="ACJFEZ_001200"
     CDS             complement(3745..3867)
                     /locus_tag="ACJFEZ_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917321.1"
                     /translation="MLDNPIPNSIIIATIAITAIFCAVAVVFIKNLAKKQKEKE"
     gene            complement(3860..6616)
                     /gene="ileS"
                     /locus_tag="ACJFEZ_001201"
     CDS             complement(3860..6616)
                     /gene="ileS"
                     /locus_tag="ACJFEZ_001201"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HGG0917322.1"
                     /translation="MDYKDTLLLPNTTFAMRANLAEFEPKRFEKWFSKNYAYEKMKTK
                     RKEAKKAFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFNGESIRFTPGWDCHGLP
                     IEQQVEIKLGDKKKSLSKKEIRSFCREHANEFVNIQRDEFKSLGVIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYEDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLESMIAK
                     GLTKGEIQKELNAKEFEKLEAINPLNSRKSILIMGEHVLMEGGSGLVHTAPGHGEDDY
                     YACLKYDIEVIMPVDDGGCYDETLRHKGLLPSDLLDEFIGLHIFKANEKILELLGNHL
                     LQSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLKGKTLRECAKEQILKTKFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKSTKEVIFDAELFDFVANIFEKHGA
                     DAWWEFEIKDLIPQNSKYNADNLEKVYDILDVWFDSGSTWNAVLNSGIYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINEFTPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSTDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLENLEV
                     EEFSFIDKWILTRATRVFKSAKENFLAYEFAKGFNVLLNFLSADLSGIYLDISKDRLY
                     CDAKNSKRRKSAQVAMALIARELLNLLAPNLTYSVDEALEHANSLIKGDAKDVFDLSL
                     EEKFEYDFNIDDEFLLSVREKFFENIDILKKDKVIKSTLELNLDTNSKLLNSIPKDEL
                     NDWFMVSFDENLQGEVLCEFEVENESFRIMKATLCKCPRCWKVESAKEDEPCMRCAEV
                     LKHA"
     gene            6707..7795
                     /locus_tag="ACJFEZ_001202"
     CDS             6707..7795
                     /locus_tag="ACJFEZ_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HGG0917323.1"
                     /translation="MKHLLFLIGDELIMNENFKDYIYRSYENKFKEIHETRFQNKTDK
                     ELPFLLEKLLDKYDFITLFTTPNHYATIAKILATLSEDNLVLKEDNLVPDKAYFQKDS
                     FICDFINSKINVIKTNPGQKLPPLLGDIFPNFAYFCLLGIDDESAVLLLDTLTKSYEV
                     SIKSSKILENLTLIKASCVNFGKLDGFLTSVKNLFGQKVFLGKDPIQFIVSKLLEKKI
                     KISFAESCTGGLCASTLTKFSGVSEIFEGSIVSYSNKIKHEWLGISESILENQGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVTGEQDEGLVKSGTVYIGAMFKDGTFVQETLYLS
                     GDREFMQKQATLATFCLLLKLKPEIFEF"
     gene            7807..8231
                     /locus_tag="ACJFEZ_001203"
                     /pseudo
     CDS             7807..8231
                     /locus_tag="ACJFEZ_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
BASE COUNT         2568 a         1646 c         1174 g         2847 t
ORIGIN      
        1 actatcttat caaaagccca aatttttcta gcttcatctg cttttttagg ttctacgata
       61 agcatttctt cttcagagcc cagtctgctt tctatctctc caaaagcatt gataagcata
      121 ctatcgccat aaaagctcca ttcatctttt gtagtgccta tgcgatttac ccttaagata
      181 tttgtagaat ttaaaaaagc tcttgttttt aaaagctctt cccatctttg tttgctttca
      241 aaggtgcaag cactaggaac gataactaaa tcaatctttt tggccataat ttgttgccaa
      301 aaaatatcaa aatgtacttc aaagccaaaa agcaaagcgc attttaattt atcgtgatta
      361 aaagtaaaaa gttttaagtt gcccttattg attttattgc taaaaaattt ttcctcattc
      421 cagtgattat aaggcattaa aacttgctgt tcataggttt tgatatggtt aggagcgacc
      481 tttaaacaaa gctttttata tcccttagtt tctacactga tataaggagc gatgatttca
      541 agctcatgtt ttttagcaag cctaatcaag ctttcttttt tagcttcgct ttgctcttta
      601 atcatagact ttggcatagc caaaagctct gtaaaaaaac tattaagcac atattcgccc
      661 aaaacgacta aatttgctcc actatcctta gaagctttta gataataatc aagccttgat
      721 tcgctcaatg ctaaagtcgg aaactgcaaa gcagcaatct tactcatcga tatgctccac
      781 ttcaagcctt gctttttcaa gagcaagcct tgctttttca atgcttttta atccttcttt
      841 ataaattttc acactttcat ctaagcttaa ttctttatca ttgagctttt ctaaggattc
      901 gtttgcattt tttaagtttt cttcaaaact cattgattta ccttataatt tggtgcttca
      961 tgggttatcg ttacatcatg aacatgactt tctttaagcc ctgcacttgt gatttcaaca
     1021 aattcagccc ttgcttgaaa atcttctata tctttagcac ccacataacc catagaagag
     1081 cgaagtcctc ctaaaagctg atgcacgaca ttttttatac ttcctacata aggcacgcgt
     1141 ccttctatac cttcaggaac taatttatct tgtgcagttc cttgctgaaa atatctatct
     1201 gaacttcctt tttgcatagc ccctatcgat cccatgccac ggtaggattt gtattgtctt
     1261 ccttgatagg taaagagctc acctggactc tcatcagtac ctgccaaaag agaacctatc
     1321 atgatcgaac tcgcacccgc tgccaaagcc tttgcaatat cacctgaata cttaatccct
     1381 ccatcagcga tcacaggaac accatatttt ttagcctcca tagcacattc atcaatggct
     1441 gaaatttgtg gcacacctac tcctgaaacg atacgcgtag tacaaatact tcctgggcca
     1501 atacccactt taacagcatc agcgcctgct tcacaaagtg cttttgcagc agctgcggta
     1561 gcgatattgc ccgcgattaa atctaaattt ggatattttt ctttaacgct ttttactgta
     1621 tcaatgatac ctttagaatg cccatgcgct gaatcaagaa ctacagcatc tactccagct
     1681 tctaccaaag catctactcg atccatttgc cctactccaa tcgcagccgc tacgcgcaat
     1741 cttccaaaac tatctttatt tgcatctgga tattctttgc gttttttaag atcttttatg
     1801 gtgataagtc cttctaagcg tccttgctca tcaactatag gaagtttttc tactttgttt
     1861 ttgctaaaaa ttttctctgc atcatctaaa gtgcaccctt taggagctgt gatcaaagga
     1921 gccttagtca ttatattttc aaccaaattt gaataatcat tttcaaatct caaatcgcga
     1981 ttagtaagaa tgcctatgag ctttctatcg ctatctatca caggaactcc tgaaattcta
     2041 tactctgcca tgatttccaa agcctctgct acacttgctt taggacctac aaaaatagga
     2101 tctatgatca ccccgctttc actttttttc actcttttta cttctcttac ctgtgaagtt
     2161 atatccatat ttttatgaat tacaccaagt ccaccaagtc ttgccatcat gatagcagct
     2221 ctgtgctctg tcactgtatc catagcagca gagattaaag gcatatttaa agtgatgttt
     2281 ttagtaagtt tggtatgaat ttttacctgc ttaggtaaaa cctcggaata gcaagggcgt
     2341 aaaagtacat cctcaaaagt caaagcgcgc ttaattatat tcatttattt tcctttataa
     2401 ttttttctaa acttaaagct ccatctagca aggtttgctc atcataagcc ttgcaaataa
     2461 gctgggctga gatattaagc ccttctttat cctcgcccac aggcacacta atacccccaa
     2521 gtcctgctaa atttacagag atagtataaa catcttctaa ataagtttgc atagggcttt
     2581 tttgagtatc aaatttaaaa gccgttgtag gagttacagg cataaaaata agatcacaat
     2641 cttgtaatat ttcttcatat tttgccttga taaaagccct agctttttgt gcttttatat
     2701 aataagcatc ataataacca ctgcttaaaa caaaggttcc tagtaaaatt cttcttttta
     2761 cctcttcacc aaaaccttcg ctacgagtat taatatacat atctttaaga ttttctgtat
     2821 tttgcgagcg ttttccataa cgcaccccat cataacgact taaatttgca ctcgcttcag
     2881 ctgttgcgat gatataatac gctgcgatat caaacttaga atcaagcata tttttataaa
     2941 caatttcatg tccatttgct tttaacatct ctatactttt taaaagcgcg gcttttactt
     3001 cagcgcttgc ttcattgaca taattttcta tcacagcaat tctcaatttt ttctctgcat
     3061 ttaaattagg agcagtaggt gtaaaatcta ctttcgcact tgtgctatcc atcttatcat
     3121 aacctgcaat ggcatcataa agaatagctg catcttctac attttgcgtt aaaacgccta
     3181 tttgatcaag gcttgaagaa taagaagcaa gcccatatcg actcactctt ccatagctag
     3241 gcttaaaccc cacacaacca caaaaagcag ctggttgacg cactgaacca cccgtatcgc
     3301 tacccaaact agccaaagcc aaaccacctg ctacggcagc agcactacca ccacttgaac
     3361 cacctggaac tcgagcgaaa tttaaaggat ttagggtttt tccataaaat gaagttgcac
     3421 ttgagcttcc catggcaaat tcatccatat tagtccgtcc ataaggacta aaacctttag
     3481 atcttaaatt tttaatagca gtagcatcat aaggagctac atatccttgt aaaattttac
     3541 ttgcgcaagt taattcccag tcttttacac tgatattatc tttaatcgct ataggtatac
     3601 cttcaccccc atcgcttaaa tctttactta agaattgctc tatataagca cctattttat
     3661 tttctttctt agccttatca ttgagttctt tttttagatt ttcaagctct tctttagagt
     3721 atttcaaagc ttcttttaag gttatcattc tttttccttc tgtttctttg ccaaattttt
     3781 aataaaaaca accgccactg cacaaaaaat agcggtgatt gctatggtag ctataataat
     3841 ggaattgggg ataggattat caagcatgtt ttaaaacctc agcgcaacgc atgcaaggct
     3901 catcctcttt agcgctttct actttccaac atctaggaca tttgcaaagc gtagctttca
     3961 taatcctaaa gctctcattc tccacttcaa attcacacaa aacttcaccc tgtaaatttt
     4021 catcaaaact taccataaac caatcattta attcatcttt aggtatagaa tttaaaagtt
     4081 ttgaatttgt gtcaagatta agttctaatg ttgatttgat cactttgtct ttttttagta
     4141 tatcgatatt ttcaaagaat ttctcacgca cgctcaataa aaattcatca tctatattaa
     4201 aatcatattc aaatttttct tccaagctca aatcaaatac atccttagca tcgcctttta
     4261 tcaagctatt agcatgctct aaagcctcat ctacactata ggttaaattt ggagctaata
     4321 aatttaaaag ttctctagcg attaaagcca ttgccacttg tgcagatttt ctgcgcttgc
     4381 tatttttagc atcacaatac agcctgtctt tgcttatgtc aagataaatt ccacttaaat
     4441 cagcgcttaa gaaatttaaa agcacattaa aaccttttgc aaattcatag gctaagaaat
     4501 tttctttagc acttttaaat acgcgtgtag cacgagtcag tatccattta tctataaagc
     4561 taaattcctc tacttctaaa ttttccaagt cattagtatt tgcaagtaaa aatcttatgg
     4621 tatttcttat ttttcggtat tgctcgccta cttgttttaa gatattgtct gaaattttta
     4681 aatcagtaga ataatcactc aaaagtatcc aaagtcttaa aatttccacc ccataagttt
     4741 tagctacata ctcaggagct ataacattac ctttggattt tgacattttt tgcccttttt
     4801 catccgtggt aaagccatgg gttaagatac tttcataagg agtaaattca ttgatagctg
     4861 ttcctacaag caaagagctt tgaaaccaac ctctatgctg atcgcttcct tctagataca
     4921 tacttgctct tttctctcct gcatcgtaga ttccgctatt taaaactgca ttccaagtac
     4981 ttccactatc aaaccaaaca tctaaaatat cataaacttt ttccaagttg tctgcattgt
     5041 attttgaatt ttgaggtatt aagtctttga tttcaaattc ccaccaagca tctgctccat
     5101 gtttttcaaa tatatttgcc acaaaatcaa aaagctcagc atcaaaaatc acttctttag
     5161 tgcttttatc tctaaagaaa gctataggcg tcccccaatc cctttgtctt gaaatacacc
     5221 aatcaggacg attttccacc atagagccta ttctttttac tccactttgt ggataaaatt
     5281 ttgtttttaa aatttgctct ttagcacatt ctcttaaagt tttgcctttt aattttggct
     5341 catccattaa aataaaccat tgcttagtcg ctctataaat cacaggtttg tgagttctcc
     5401 aacaaaatgg ataggagtgt atgaatttag aagattgtag aagatgattt cctaaaagct
     5461 ctaaaatttt ttcattagcc ttaaagatat gaagtcctat aaactcatca agcaaatcag
     5521 atggcaagag tcctttgtgg cgtaaggttt catcataaca tccaccatca tccacaggca
     5581 tgatcacttc tatatcgtat ttcaaacaag cataataatc atcttcgcca tgtcctggag
     5641 ctgtatgtac aagtccgctt ccaccttcca ttaaaacatg ctcgcccata atcaagatgg
     5701 attttcttga atttaaagga ttgatagctt ctaatttttc aaactctttt gcattaagct
     5761 ctttttgaat ttcacccttt gtcaaacctt tagctatcat actttcaagc aaagcactag
     5821 caaaaatcaa tccttcttta gtgataacat agttttcatt tggatttaaa gcgatagctt
     5881 gatttgccac caaagtccaa ggagtagtag tccaaatcac tgcacttgct tttgaaacgc
     5941 ctaatttttc gcaagctttt acatctaaat caaaagccac aaaaatagaa taatcctctt
     6001 tatcttcgta ttctacctca gcttcagcaa gagctgattt agccgcccaa ctccaaaaaa
     6061 caggtttaga acgctcgcaa agcaaacctt ttttagcaat ctcgcataaa gtgcggtaaa
     6121 tcgccgcttc aaattcaaat ttcatcgtaa gatacggctt atcccaatcc gcaattacac
     6181 caagactttt aaattcatct ctttggatgt tcacaaattc gtttgcatgc tctctacaaa
     6241 atgatcgaat ttctttttta ctcaagcttt ttttcttatc tccaagtttg atttcaactt
     6301 gctgttctat aggcaagcca tgacaatccc aacctggagt aaagcgaatg ctttctccat
     6361 taaaataatg cgttttgata atcgtttctt ttaagatttt atttaaagca tgtcctatgt
     6421 ggatatgtcc attagcataa ggagggccat catgaagagt aaaagctttc ttcgcctctt
     6481 tgcgttttgt tttcattttt tcataagcgt aattcttgct aaaccatttt tcaaatctct
     6541 ttggctcaaa ttctgccaaa ttagcgcgca ttgcaaaagt agtatttggc aaaagcaggg
     6601 tatctttata atccattgtt ccacctagat gaagttttta taatcttaaa ttctactcaa
     6661 aataatttaa aatttagcta taattactat aaaaaaggaa aaaattatga aacatttgct
     6721 ttttcttatc ggtgatgaac ttataatgaa tgaaaatttt aaggattata tttatcgtag
     6781 ttatgaaaat aaatttaaag aaattcatga aactcgtttt caaaataaaa ccgataaaga
     6841 attacccttt ttgcttgaaa aattactaga caaatatgat ttcataactc tttttaccac
     6901 gccaaaccac tatgctacca tagcaaaaat tttagccacc ctaagtgaag acaatctagt
     6961 cttaaaagaa gataatctag tccctgataa agcttatttt caaaaggata gttttatatg
     7021 tgattttatc aattcaaaaa tcaatgttat caaaacaaat ccaggacaaa aacttcctcc
     7081 tttgcttgga gatatttttc ctaattttgc ttatttttgt ttattaggca tagatgatga
     7141 gagtgccgtt ttactgcttg ataccttaac caaatcttac gaagtcagta taaaatcaag
     7201 caagatatta gaaaatctta ctcttattaa agcaagttgt gttaattttg gcaagctaga
     7261 tggtttttta acgagtgtaa aaaatctttt tggacaaaaa gtatttttag gcaaagatcc
     7321 tatacaattt atcgtttcaa aacttttaga aaaaaagatc aaaatttctt ttgcagaaag
     7381 ctgcacaggc ggactttgcg caagcactct tacaaaattt agtggagtga gtgaaatttt
     7441 tgaaggttct atcgtaagct attctaataa aatcaaacac gaatggttgg gtattagtga
     7501 aagcatttta gaaaatcaag gcgaatacag tgaacgttgt gtttatttta tgctaaaagg
     7561 tatttttaaa acagctaatc ctgattttgc actagctatt agcggtgtta caggagagca
     7621 agatgaaggg ttggtaaaat caggcacagt ttatatagga gcgatgttta aagatggaac
     7681 attcgtccaa gaaactcttt atttaagtgg cgaccgtgaa tttatgcaaa aacaagctac
     7741 tttagcgact ttttgcttgc ttttaaaatt aaaacctgaa atatttgaat tttaaaggga
     7801 ctgatagtga gagaaattaa tttaaaagaa gacttagaaa aaatttatcc cttaataaaa
     7861 caattaagaa ataatctgtc tttagaggat tttttagaaa aatttcaact tgctaaaaaa
     7921 actcaacatt ataaactttt tgcatatgaa gaaaagggag ctttcaaagc agcttgtgga
     7981 gttatgccct ttaatgtgct ttatcataat cattgtcttt atatttgtga ttttgttgta
     8041 gatgaagctt taagaggtaa aggtgtgggt caatcttttt ttaaaaaaat tcaaatttgg
     8101 gcaaaaaaca aggatatgaa gaattggaat taagctcaag tttttttaga acacaagctc
     8161 atgaatttta tatccaaaaa atgggttttg aaaaatctgg ttttgttttt aagaaaaata
     8221 tcaaactata atatt
//
LOCUS       DBBXRO010000071         8128 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.072, whole genome shotgun sequence.
ACCESSION   DBBXRO010000071 DBBXRO010000000
VERSION     DBBXRO010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8128
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.072"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            91..477
                     /gene="rpsL"
                     /locus_tag="ACJFEZ_001204"
     CDS             91..477
                     /gene="rpsL"
                     /locus_tag="ACJFEZ_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HGG0917324.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGTKRPKAGAAK"
     gene            547..1017
                     /gene="rpsG"
                     /locus_tag="ACJFEZ_001205"
     CDS             547..1017
                     /gene="rpsG"
                     /locus_tag="ACJFEZ_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HGG0917325.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            1030..3105
                     /gene="fusA"
                     /locus_tag="ACJFEZ_001206"
     CDS             1030..3105
                     /gene="fusA"
                     /locus_tag="ACJFEZ_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HGG0917326.1"
                     /translation="MSRSTPLKRVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            3134..3210
                     /locus_tag="ACJFEZ_001207"
     tRNA            3134..3210
                     /locus_tag="ACJFEZ_001207"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3168..3170,aa:Arg,seq:cct)
     gene            3261..3413
                     /locus_tag="ACJFEZ_001208"
     CDS             3261..3413
                     /locus_tag="ACJFEZ_001208"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917327.1"
                     /translation="MLKFFFTISLSSLLFAQNFIDFASQNNALKQEQNTSKENTPLKR
                     IKIPTH"
     gene            3416..4117
                     /locus_tag="ACJFEZ_001209"
     CDS             3416..4117
                     /locus_tag="ACJFEZ_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HGG0917328.1"
                     /translation="MQDSIKLAQLSDGYRYNSDSLLLADFVLEMGIKNQVLEVGSGCG
                     IIGILLKKFVSNLDLSLLDIQQENIELIHRNLKQNNIQAGVLHEDFRNFQNDKKFDFI
                     VCNPPFYRDGAHEGKNTHKNISKFQKYLTLNEFIVRSNALLKPMGVLYFCYEALALDK
                     ICLVLESKKLKLTKIRFVHTHQNISARLVLVQARKSVKSPCEILPPFFIYKNENLSEQ
                     MQEIHSRFRLESYDI"
     gene            4107..4481
                     /locus_tag="ACJFEZ_001210"
     CDS             4107..4481
                     /locus_tag="ACJFEZ_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HGG0917329.1"
                     /translation="MIFNKDFSYGFNENACQECGGKCCTGESGNIFANKEELKALREH
                     LQLDEKEFALKYLKKVGFRMSFKEVEFEDGFACIFFDKEKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQEELKKECIGICYLS"
     gene            4454..5731
                     /locus_tag="ACJFEZ_001211"
     CDS             4454..5731
                     /locus_tag="ACJFEZ_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0917330.1"
                     /translation="MYRNLLFVLIGFFLTACGASKTIIAYPDYKQQKSNEFDLRIMKA
                     YNYEYFNQYEEARDEFLALFRDYNITNFLENAFLLTLANNLDKKEEINNIAKPYLDKS
                     DNLKRLSALYALNSYNLKEAQELIQGLLKKKSDDPRNLELYGDVLIRQNNLKDAIKYY
                     QLAYNQVQNEEILFKLVGVYAILNDTSSIKNILENSKNINGCTLKTCILLAKIYNDKG
                     NSKALQEIYIELYNITKNKSFILALIELLSSQNKDKEALHFALKYNADDDMKLYLYQR
                     LKLYNKAKDLSMQIYKRTQEKEYLLRAAVFEFEEANLNKKITPQVVALVSEKFSNAID
                     ENSDALYLNYYGYLLIDYDLDLKKGMKLVELALKKEPQNLYYLDSLAWGYYKQGDCKK
                     AWEILKQTLEDKEFANSDESKAHAKAIKACIKP"
     gene            5728..6504
                     /gene="trpC"
                     /locus_tag="ACJFEZ_001212"
     CDS             5728..6504
                     /gene="trpC"
                     /locus_tag="ACJFEZ_001212"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HGG0917331.1"
                     /translation="MILDKIFEKTKEDLKERKAQLPYDMLGRSLASNPFFPKDVKAAL
                     KRIENEVRIIAEVKKASPSKGVIRENFDPLDIALKYEKNGAAAISVLTEPHFFQGSLE
                     YLSMIRRYTHAPLLRKDFIFDEYQILEALVYGADFVLLIARMLSMKELKRLLEFTRHL
                     GLEALVEIHDKEDLSKAIFSGADIIGINHRNLDDFSMDMNLCEKLIPQIPNSKIIIAE
                     SGLEDKDFLRHLQNLGVDAFLIGEYFMRQNDEGEALKALL"
     gene            6515..7000
                     /locus_tag="ACJFEZ_001213"
     CDS             6515..7000
                     /locus_tag="ACJFEZ_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HGG0917332.1"
                     /translation="MQYLYAPWRSEYFEKEKSECPFCDCANKIKSDEELGVIFRAKYC
                     FGVMNRYPYSAGHFMIIPYLHEEHIENLSDEAWQEISQFVRLGVRILKSELHAGGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWAGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNV
                     K"
     gene            6990..7988
                     /gene="mnmH"
                     /locus_tag="ACJFEZ_001214"
     CDS             6990..7988
                     /gene="mnmH"
                     /locus_tag="ACJFEZ_001214"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HGG0917333.1"
                     /translation="MLNEVDFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNMSKHILELAHKFRIGDKIGIYCSRGGLRSKS
                     IAVILSELGYRVVRLKGGFKAYRSFLAHYFDNEINLDFFALCGNTGCGKTELLELLPH
                     HLNLEKMANHLGSSFGDILGAQPTQKAFEANLFYTLNSLKDFIFIESESRKIGEIVLP
                     LKLYEKMQKAFKIHCFCSLEKRIDRIQKIYQEKMTPLKFKECLAKISPYISVNFRQDL
                     LKSYEQREWQRLIALLLAYYDKSYKKPQKIDFELNTDDIFKAKEELLGYFKTQLLF"
BASE COUNT         2861 a         1064 c         1610 g         2593 t
ORIGIN      
        1 aagcatttaa attatttcta gtttatattt ttgtaagtaa attttagata tcatccaaag
       61 tttattacat ttttaaagaa aggaattatt gtgcctacca taaatcaatt ggttagaaaa
      121 gagcgcaaaa aagttttaga aaaatctaaa tctccagcgc ttaaaaattg tccacaaaga
      181 aggggagttt gcactagggt ttatactaca acacctaaaa aaccaaactc agcgttaaga
      241 aaagttgcca aagtaagact taccagtggc tttgaagtga tcagctatat cggcggtgaa
      301 ggtcataact tgcaagaaca cagcattgtt ttagtgcgtg gtggtagggt aaaagactta
      361 ccaggggtta aatatcacat cgttcgtggt gctcttgata cagcaggtgt tgcaaaaaga
      421 acagtttctc gttctaaata cggcactaaa cgccctaaag caggcgctgc aaaataatca
      481 ttcatacaga caaatccgtt agatttgatt ttgtttgagt aaaatttaaa atttgaagga
      541 aaaataatga gaagaagaaa agctccggta agagaagtct tgcctgatcc gatttatggt
      601 aataaagtaa tcacaaaatt tattaattct ttaatgtatg atggtaaaaa aagcacagct
      661 acaacaatta tgtatggtgc tttggaagct attgataaaa aaggtggtga gaaaaaaggt
      721 attgatattt ttaatgatgc gattgaaaat attaagcctt tattagaagt gaaatctcgt
      781 cgtgtaggtg gtgcaaccta tcaagttcca gttgaagttc gtcctgctag acaacaagct
      841 ttagcaattc gttggattat ttcttttgct agaaaaagaa gtgaaagaac tatgatagat
      901 aaacttgcag ctgaactttt agatgcggca aatagcaaag gtgcttcatt taagaaaaaa
      961 gaagatactt ataaaatggc tgaagcaaat aaagcatttg ctcactatcg ttggtaagaa
     1021 ggagaaaaaa tgtctagaag tactccttta aaaagggtta gaaatatcgg tattgctgca
     1081 catattgatg cgggaaaaac aactacaagt gagagaattc ttttctttac aggtatgagt
     1141 cataaaatag gcgaagtgca tgatggtgct gcaactatgg actggatgga acaagaaaaa
     1201 gagcgtggga ttactatcac ttctgcggct acaacttgtt tttggaaaga tcatcaaatc
     1261 aatcttattg acactccagg ccacgtggat ttcaccatag aagttgaaag atctatgcgt
     1321 gttcttgatg gtgctgttgc agtattttgt tcagtaggtg gggtgcaacc tcaaagcgaa
     1381 actgtttgga gacaagcaaa taaatatggt gttccaagaa tagtttttgt aaataaaatg
     1441 gatagaatcg gcgcaaactt ctataatgta gaagatcaaa ttcgtaatcg cttaaaagct
     1501 aatccagttc cacttcaaat tccaatcggc gctgaagata atttcaaagg tgttatcgat
     1561 cttgtaacta tgaaagcttt agtttgggaa gatgatacta agccaacaga ttatgtagaa
     1621 aaagaaattc ctgctgagct taaagaaaaa gcagaagaat atcgcactaa aatgatagaa
     1681 gcggtttcag aaacttcaga tgagttgatg gaaaaatatt taggcggaga agaattaagc
     1741 cttgaagaga ttaaaacagg gattaaagca gggtgtttaa gtctttctat tgttcctatg
     1801 ctttgtggaa ctgcatttaa aaataagggt gttcaacctt tacttgatgc tgttgtggct
     1861 tatttgccag ctccagatga agttgctaat atcaaaggag aatatgaaga cggcacagaa
     1921 gtttctgtaa aatcaaccga tgatggcgaa tttgcaggac ttgcatttaa aattatgaca
     1981 gatccatttg taggacaact tactttcgtg cgtgtttatc gtggatgttt agaaagcggt
     2041 tcttatgctt ataactcaac caaagataaa aaagaaagaa ttggtcgttt gttaaaaatg
     2101 cactctaata aaagagaaga aattaaagtt ctttacgcag gagaaatcgg tgcagttgta
     2161 ggacttaaag atactttaac aggggatact cttgcaagtg aaaaagataa ggtaattctt
     2221 gaaagaatgg atttcccaga tcctgttatt tctgttgcag tagaaccaaa aactaaagca
     2281 gatcaagaaa aaatgtctat tgcgctaaat aaactagctc aagaagatcc aagctttaga
     2341 gtttctacgg atgaagaaag tggtcaaact atcatttcag gtatgggtga attacacctt
     2401 gaaattattg ttgatcgtat gcttcgtgaa tttaaagtgg aagctgaagt gggacaacct
     2461 caagttgctt accgcgaaac cattagaaaa actgttgaac aagaatacaa atacgctaag
     2521 caatcaggcg gtcgtggtca atacggacat gtattcttac gccttgagcc acttgagcca
     2581 ggtagtggat atgagtttgt taatgatatc aaaggtgggg taattccaaa agaatatatt
     2641 cctgcggttg ataaaggtgt tcaagaagca ttgcaaaatg gtgttttagc aggttatcct
     2701 gtggaagatg ttaaagtaac tgtttatgat ggaagttatc acgaggtgga ttcatctgag
     2761 atggcgttta aacttgctgc ttctatgggc tttaaagaag gtgctagaaa agcaggtgct
     2821 gtgatcttag agcctatgat gaaagttgaa gtagaaactc ctgaagatta catgggcgat
     2881 gttattggag atcttaacaa acgccgtggt caagtaaata gcatggatga gcgtggtgga
     2941 aataaaatca tcacagcatt ttgtcctttg gctgaaatgt ttggttattc tactgatctt
     3001 agaagtcaaa ctcaaggtcg tgcgacttat tctatggaat ttgatcatta tgatgaagtt
     3061 cctaaaaatg ttgcggatga aatcatcaaa aaaagaaacg gttaaatttt tagcgggatt
     3121 tttcccgctt tctgtcctcg tagctcagca ggatagagcg caaaattcct aattttgagg
     3181 ccgtgagttc gaatctcgcc gtggacacca tttaaatttt ttaaataaac ttaaatagaa
     3241 tataaatttc aaggaaaatt atgttgaaat tttttttcac aatatcatta tcttccttac
     3301 tttttgctca aaattttata gattttgcaa gtcaaaataa tgctttaaaa caagaacaaa
     3361 acacaagcaa agaaaatact cctttaaaaa gaattaaaat tccaacccat tgaaaatgca
     3421 agatagtatt aaattagccc aattgagtga tggttatcgt tacaacagcg attctttact
     3481 tttagctgat tttgttttag aaatgggtat taaaaatcaa gtcttggaag taggttcggg
     3541 atgtggtatt ataggaattt tacttaaaaa atttgtttct aatttagatt tatctttgct
     3601 tgatatacaa caagaaaata tagaactcat tcatcgtaat ctaaaacaaa ataatataca
     3661 agctggagta ttgcatgaag attttagaaa ttttcaaaat gataaaaaat ttgattttat
     3721 agtttgtaat ccaccttttt atagagatgg ggcgcatgag ggtaaaaata cgcataaaaa
     3781 tataagtaaa tttcaaaaat atttgacttt aaatgaattt attgttagat ccaatgcttt
     3841 gttaaaacct atgggggtat tgtatttttg ttacgaagcc ttggctttag ataaaatttg
     3901 ccttgtttta gagagtaaaa agctaaaatt aactaaaatt cgttttgtac atactcatca
     3961 aaatatttca gcaagacttg tcttggtgca agctagaaaa agtgtaaaat cgccttgtga
     4021 gattttaccc ccttttttta tctataaaaa tgagaatttg agtgagcaaa tgcaagagat
     4081 tcactctaga tttaggttgg aaagttatga tatttaataa agatttttct tatggattta
     4141 atgaaaatgc ttgtcaagaa tgcggtggaa aatgttgcac aggagaaagt ggaaatattt
     4201 ttgcaaacaa ggaagagtta aaggctttga gagagcattt gcaattagat gaaaaagaat
     4261 ttgctttgaa atatttaaaa aaggtaggct ttagaatgag ttttaaggaa gttgaatttg
     4321 aagatggatt tgcatgtatt tttttcgata aggaaaaaag aaattgctct atttatgatt
     4381 ttcgtccgaa gcaatgccgc acctttcctt tttgggaata ttttaaaaca catcaagagg
     4441 agctaaaaaa agaatgtata ggaatttgtt atttgtctta ataggctttt ttttaactgc
     4501 gtgtggggct tcaaaaacga ttatagctta ccccgattat aagcagcaaa agagcaatga
     4561 atttgattta aggatcatga aagcttataa ttatgaatat tttaatcaat atgaagaagc
     4621 tagggatgag tttttggcac tttttagaga ttataatatt actaattttt tagaaaatgc
     4681 atttttgcta actctagcaa acaaccttga taaaaaagaa gagataaata atatagccaa
     4741 gccttatctt gataagagtg ataatcttaa gcgtcttagt gcactttatg ccttaaattc
     4801 ttataatctt aaagaagctc aagagcttat ccaagggctt ttaaagaaaa aaagtgatga
     4861 tccaagaaat ttagagcttt atggagatgt attaatacgc caaaataatt taaaagatgc
     4921 cataaaatat tatcaactag cctataatca agttcaaaac gaggagattt tgtttaagct
     4981 cgtgggtgtt tatgctatat taaatgatac ttcaagcatt aaaaatatac tagaaaattc
     5041 aaaaaatatt aatggttgca ctcttaaaac ttgcatttta ctagcaaaga tttataatga
     5101 taagggcaat agcaaagctt tacaagaaat ttatatagag ctttataata ttacaaaaaa
     5161 caaaagcttt atcctagctc ttatcgagct tttaagttct caaaacaaag acaaagaagc
     5221 attgcatttt gctttaaaat ataatgcaga tgatgatatg aagctttatt tatatcaaag
     5281 gttaaaatta tacaacaagg ctaaagatct tagtatgcaa atttataaac gcactcaaga
     5341 gaaagaatat cttttgcgtg cagcagtgtt tgaatttgaa gaagcaaatt tgaataaaaa
     5401 aatcactccg caggttgttg ctcttgtgag cgaaaaattt tctaatgcga ttgatgaaaa
     5461 tagtgatgct ttgtatttga attattatgg gtatttattg atagattatg atttagatct
     5521 taaaaaaggt atgaaattgg ttgaacttgc cttaaaaaaa gagcctcaaa atttatacta
     5581 tttggattct ttagcgtggg ggtattataa acaaggtgat tgtaaaaagg cttgggaaat
     5641 tttgaagcaa actttagagg ataaagaatt tgcaaattct gatgagagca aggctcatgc
     5701 aaaagcaata aaggcgtgta ttaaaccatg attttagata aaatttttga aaaaactaaa
     5761 gaagatttaa aagagcgtaa ggcgcaactg ccttatgata tgttgggacg atctttagca
     5821 tcgaatcctt tttttcctaa agatgttaaa gctgctttaa aaagaataga aaatgaagta
     5881 agaattatcg cagaggttaa aaaagctagt ccaagtaaag gggttataag ggaaaatttt
     5941 gatcctttag atatagcttt aaaatacgaa aaaaatggag ctgctgctat ttcagtttta
     6001 acagaaccgc atttttttca agggagttta gaatacctta gcatgatacg ccgttatacg
     6061 cacgctcctt tgttgcgaaa ggattttatt tttgatgagt atcaaatttt agaagctttg
     6121 gtttatgggg cggattttgt tttgcttatc gctagaatgt taagtatgaa agagcttaaa
     6181 agattgcttg aatttacaag acatttggga cttgaagcct tggtggaaat tcacgataaa
     6241 gaagatttga gcaaagcgat tttttcagga gctgatatta taggcataaa tcatcgcaat
     6301 ttggatgatt tttctatgga tatgaattta tgcgaaaaac tcatcccaca aattccaaat
     6361 tcaaaaatta ttatcgcaga aagtggttta gaggataaag attttttaag gcatttgcaa
     6421 aatttaggcg ttgatgcttt tttaatcgga gaatatttta tgcgtcaaaa cgatgaagga
     6481 gaggctttga aagccttgct ttaaaaggat aaaaatgcag tatttgtatg caccatggcg
     6541 aagtgagtat tttgaaaaag aaaagagcga gtgccctttt tgtgattgtg ctaataaaat
     6601 caaaagcgac gaagaattag gagtgatttt tagagctaag tattgttttg gcgtgatgaa
     6661 ccgctatcct tattctgcag ggcattttat gataatacct tatttgcatg aagagcatat
     6721 agaaaattta agtgatgaag cttggcaaga gataagtcaa tttgtgcgtc taggggtaag
     6781 aattttaaaa agtgaactcc atgcaggtgg ggtaaatatc ggtatgaatt taagtaaaga
     6841 tgcgggtgct gggatagctc ctcattgtca ttatcaccta gtgccgcgtt gggcagggga
     6901 tactaatttt atcaccacta taggagagac tagggtttgt ggtaccaata tagaacaagt
     6961 ttatcaaaaa cttgttttgg cgtttaaaaa tgttaaatga agtagatttt gcagaatttc
     7021 aaaaagaaaa tttctctctt ttaatcgatg caagaagccc tagggaattt ttacattctc
     7081 atttgatagg ggcgttgaat ttttatgctt taaatgatga agaatatcaa gaaataggaa
     7141 caatttataa aaaaaatcaa gctttggcta aggctagggg tgcgagttat atttgtcaaa
     7201 atatgtcaaa gcatatctta gagcttgccc acaaattccg tataggagat aagatcggaa
     7261 tttactgctc tcgtgggggt ttgcgttcaa aatctattgc agtgattttg agcgaattgg
     7321 gctatagagt ggtgcgttta aagggtggct ttaaagctta tagaagtttt ttggcgcatt
     7381 attttgataa tgaaataaat ttagattttt ttgctctttg tggtaataca ggctgtggaa
     7441 agacagaact tttggagctt ttgccccatc atttaaattt agaaaaaatg gcaaatcatc
     7501 taggatcatc ttttggtgat attttaggtg ctcagcctac gcaaaaagct tttgaagcaa
     7561 acctttttta tactttaaac tctttaaaag attttatctt tatagagagc gaaagtcgta
     7621 aaataggtga aatagtttta cctttaaagc tttatgaaaa aatgcaaaaa gcatttaaaa
     7681 ttcattgttt ttgttcttta gaaaagcgca tagacaggat acaaaagatc tatcaagaaa
     7741 aaatgactcc tttaaaattt aaagaatgtc ttgctaagat cagtccttat atcagtgtaa
     7801 attttcgtca ggatttgcta aaaagttatg agcaaagaga atggcaaagg cttattgctt
     7861 tgcttttggc ttattatgat aagagttata aaaagccaca aaaaatagat tttgagctaa
     7921 acactgatga tatctttaaa gccaaagaag agcttttagg ctattttaaa acgcaattgc
     7981 ttttttaata ctagataatt tctactttta atttaaaaaa aacttttacc aaatcatcaa
     8041 aattttcttt attatcttgc aagaattctt ttttattgtt ttagtttagc cctaaatttt
     8101 tattttaatg ctagtaaatt tgaattat
//
LOCUS       DBBXRO010000072         8033 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.073, whole genome shotgun sequence.
ACCESSION   DBBXRO010000072 DBBXRO010000000
VERSION     DBBXRO010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8033
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.073"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..578)
                     /locus_tag="ACJFEZ_001215"
     CDS             complement(<1..578)
                     /locus_tag="ACJFEZ_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HGG0917334.1"
                     /translation="MLKKIFFILSKEDKKFLFSLLLFSVFISFIESFAISLVMPFITL
                     ASDFSYFDRNKYLIQLKDYLALPVFEIIVYFGVVLIVFYVLRALLNSYYFHLLARFSK
                     GRYHAIAYKVFAKFLNTDYENFTQKNQSEILKSITGEVYNLSTMISSFLLMMSEIFVV
                     LLLYTLMLLVNYKITLFLSLFMIINAFILIKVL"
     gene            complement(572..1558)
                     /gene="galE"
                     /locus_tag="ACJFEZ_001216"
     CDS             complement(572..1558)
                     /gene="galE"
                     /locus_tag="ACJFEZ_001216"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HGG0917335.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTNHEICVLDNLSKGSKIAIDDL
                     QNIREFKFFEQDLSDFEGVKALFEREKFDAVVHFAASIEVFESMQNPLKYYMNNTINT
                     TNLIQTCIQTGVGKFIFSSTAATYGEPTTPVVSENSPLAPINPYGRSKLMSEEVLRDA
                     NMAHPEFKYCILRYFNVAGACMDYKLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLENNESNIFNVGYGHGFSVKEVIDAMKRVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKFDDLDLICKSAFDWEKQC"
     gene            complement(1615..2406)
                     /locus_tag="ACJFEZ_001217"
     CDS             complement(1615..2406)
                     /locus_tag="ACJFEZ_001217"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HGG0917336.1"
                     /translation="MMKNEGYICIFDCESIPDTDLIHKTLAFEGEDLEVSLKALEWQK
                     EQSGSEFLPLPYHKIVSICAVISDHYGKFIKVNKIDGENEKEMIHNFFAFIEKYEPKL
                     VSFNGKNYDMPLLVLRALKYNIKAANYLDTQSDKWNNYKTRFSELKHCDLFESFGSTR
                     GLKLDTICAMADLPGKYDVHGDEVMKLYYEDKIEKIHEYCESDVLNTYMLFLKYELIK
                     GNVSDGDYAYFLNSMSEFLKAKKANRAYVEIFCKACENEISKMKI"
     gene            2471..3499
                     /gene="waaC"
                     /locus_tag="ACJFEZ_001218"
     CDS             2471..3499
                     /gene="waaC"
                     /locus_tag="ACJFEZ_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HGG0917337.1"
                     /translation="MKIAIIRLSALGDIIQSAVVLQFIKKFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKIIQSLKILLEARKNNYNAVMDLQGLVKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLNIDYNENVFVRYLSLTSFMLNKYFDPKDLAFKEDVFS
                     VDEKLKQLLSEKMQLTKNKKNILIHVGSSEENKIYPKTKLALLCKLIIKEFPEIKIFL
                     GWGNLKEYEFAKEVIELGAISQDNIEIAPKFSLEELIVFTKSMDLIIGNDSGPTHLAF
                     ALNRPSITIFGATPSYRNAFKTNINKIIDTGKKITNAKHLDKSDFCISTIEEEDILKL
                     VKELFGDE"
     gene            3492..4379
                     /locus_tag="ACJFEZ_001219"
     CDS             3492..4379
                     /locus_tag="ACJFEZ_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HGG0917338.1"
                     /translation="MNKDYLYLSAYYILKFLVYTMPHFILNFLAFCVSKIVFKLDKKH
                     RKIIDINLKLCFPYKDENERKELAFKIYNNFAKFGLDCIKNQNTSKEKILAKVVFDNE
                     EILTQALKEQKGVIFATAHYGNWELLSLAYAAKFGAISIVGKQLKSQRMTELLAKNRT
                     QFDIELIDKKGGLRKMLSAIKNKRALGILTDQNCTDNEGVRLDFFGKRVNYQAGASIL
                     AKKTGALIIPAYIYQGEDEKFHIKFFKTLDPLNSSLEELTKYQAKTCEEMIQFKPDEY
                     FFFHRRFASYDEKLYKGIK"
     gene            4376..5926
                     /locus_tag="ACJFEZ_001220"
     CDS             4376..5926
                     /locus_tag="ACJFEZ_001220"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0917339.1"
                     /translation="MNLEKISVIIIVKNAQNTLFECLNSLKEFGEIILLNNESTDDTL
                     KIAKEFQKDFTHLYIYESKFIGFGALKNLALSHAKNEWILNIDADEILENEAKEELKK
                     LEFKEQNILALTRKNLYKGEWIKACGWWPDHVLRVFNKKHTKFNENLVHESLILYPNT
                     HKIYLKNGLRHFAFESIDDLLDKLQKYSKLWALQNLHKESGICKALVRGFWTFFRNYV
                     LKKGIFYGYKGFIISVCNGLGAFFKYMKLYELKKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLAFLPNEVLIADDGSKEDTARLIEEYQKDFPCVLKHIWQEDEGFRAAKSRNNAI
                     KASKSEYIILIDGDMILEKDFVKNHLEFAKRKVILQGSRVILNKNESEEILKNNNYSL
                     AFNKKDFKSSKNSFLAKIIYKFSKIEQKFFDTKEIVRGSKTCNMSFFKTDFDELDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLEYNHKIYLDTIQ
                     NKKISWKG"
     gene            5932..7089
                     /locus_tag="ACJFEZ_001221"
     CDS             5932..7089
                     /locus_tag="ACJFEZ_001221"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0917340.1"
                     /translation="MKKVGVIVPIYNVENFLKECLESIINQSFNNLEIILVNDGSTDK
                     NSFEIAKEYALKDQRITLFDKENGGLSSARNTGLEYFYKEYKLEFSDEKDDFYTFIIA
                     NENPQNVYKIYKRKNACKDKILKIPNIDYLIFLDSDNSWEKDCIKECVKKMQGIDVLW
                     FDHLCIYEKEIKNKGQNTRMQIFQYKEECIISPKDYAQRALKVGSRDISFSWGGMIDF
                     NFLKQIKLKFINYIINEDIHFGMVLFASANMIYVLPKKLYKCLLRTNSISNHDKKVTK
                     ANISHYYKDIYRAFDEDAKLAKEYLKLASRVITMLKLIDFFQNKLENENSKAIKEVFL
                     PFYAKKALKFNKTNLDPLNLKNELDKIKPFAHNILPYDIWKILQRIKNIFN"
     gene            complement(7082..>8033)
                     /locus_tag="ACJFEZ_001222"
     CDS             complement(7082..>8033)
                     /locus_tag="ACJFEZ_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular polysaccharide synthesis protein"
                     /protein_id="HGG0917341.1"
                     /translation="LTNLIPIKPLRRKLRAHISYKIDHPKVSKYLDENYIQPFFKGKI
                     PSFVFKKKQDFKDNKIIWQLWFQGEENASYMIRQCFKSVKKHMGSEYKIIILNEKNIE
                     NYLEFPDFVLEKIKKKTFGEKTIVFFSDLLRVCLLATYGGIWCDASIFLSDKIPQDLR
                     NREFFAFERARHRPNKKELKKFIKSPYFSYGYFNWNDDFMVRLLNSFLIAKENNKIVS
                     VLRDLLIYFWQKEENSKYFYYFTQQILFELLKRNGYIKNEIFENKSDIECHLLQFYAK
                     DKFDNKLWEEIKKQSFLHKLTHFRSVKKDSYIDKIIMQVN"
BASE COUNT         3070 a         1185 c         1101 g         2677 t
ORIGIN      
        1 agaactttga tcaagataaa agcatttata atcataaaaa gacttaaaaa taaagtgatt
       61 ttataattta ctaaaagcat gagagtgtaa agtaaaagca cgacaaaaat ttcactcatc
      121 atcagcaaaa atgatgaaat catagtgctt agattgtaaa cttctccggt aatagacttt
      181 agaatttcgg attgattttt ttgagtaaaa ttttcataat ctgtatttaa aaattttgca
      241 aaaactttat aagcgatagc atgataccta ccctttgaaa agcgggctaa gaggtgaaaa
      301 taataactat ttaacaaagc gcgcaaaaca taaaagacaa taagcacaac accaaaataa
      361 actataatct caaaaacagg taaagcaaga tagtctttaa gctggattaa atacttattt
      421 ctatcaaaat aagaaaaatc actagccaaa gtaataaaag gcatcactaa agaaatagca
      481 aaactttcta taaaagaaat aaaaaccgaa aaaagcagta aagagaataa aaatttttta
      541 tcctctttac tcaaaataaa aaatattttt tttagcactg cttttcccaa tcaaatgcag
      601 atttgcaaat aagatccaaa tcatcaaatt taggctgcca agaagtaaga tttctaatct
      661 tgcttgcatc agaaatcaaa actgaaggat cacctgcacg gcgtggggca agctcgactt
      721 taaaatccac cccacttact cttttcatcg catcaataac ctcttttaca ctaaaaccat
      781 gaccatagcc cacattaaaa atattgcttt cattattttc tagataatcc aatgccgcca
      841 aatgagcact tgaaatatca tctacatgga taaaatctct tatacaagtg ccatcttttg
      901 tatcataatc atcaccaaat ataaaaagct tatcgcgttt tcctgctgcg cattctgctg
      961 ctactttgat aagcaaagtc gctttaggat agcgctgtcc taatttataa tccatacaag
     1021 cacctgcaac attaaaatat cttaaaatac agtatttaaa ttcaggatga gccatatttg
     1081 catcacgcaa aacctcttca ctcataagct tgctgcgtcc ataaggattg ataggtgcta
     1141 aaggactatt ctcgcttaca acaggggttg taggttcgcc ataagtagct gctgtagaag
     1201 aaaagataaa tttacccacc cctgtttgga tacaagtttg gattaaattg gttgtattaa
     1261 tcgtgttatt catatagtat tttaaaggat tttgcatgct ttcaaacact tcaatactcg
     1321 ctgcaaaatg caccactgca tcaaattttt ccctttcaaa aagtgctttt acgccttcaa
     1381 aatcacttaa atcttgctca aaaaatttaa attctcttat attttgcaaa tcatcaatag
     1441 caattttaga acccttagaa agattatcta aaacgcaaat ttcatgattt gtttttaaaa
     1501 actgccttaa agtatgagag ccgatgtaac ctgcaccacc actaataaga attttcattt
     1561 tttacctcga tgatttaaaa ttaaaaatca attttaatat atttatttta acgattaaat
     1621 tttcatctta gaaatttcat tttcacaagc tttacaaaaa atttccacat aggcacgatt
     1681 tgcttttttt gcttttaaaa attcactcat agaatttaaa aaataagcat aatccccatc
     1741 gcttacatta cccttgatca attcgtattt taaaaaaagc atataggtgt ttaaaacatc
     1801 actttcgcaa tactcgtgaa ttttttcaat cttatcttca taataaagct tcatcacctc
     1861 atcgccatgc acatcgtatt tacctggtaa atctgccata gcacaaatcg tatcaagctt
     1921 taaacccctt gtcgaaccaa aactttcaaa caaatcacaa tgttttaatt ctgaaaatct
     1981 agttttataa ttattccact tatcactttg tgtatcaaga taattagccg ctttgatatt
     2041 gtattttaaa gcccttaaaa caagtaaagg catatcataa tttttaccat taaaactgac
     2101 taattttggc tcgtattttt caatgaaagc aaaaaaatta tggatcattt ctttttcatt
     2161 ttctccatcg attttattta cttttataaa ttttccataa tgatcgctaa taactgcgca
     2221 aatgcttacg atcttatgat aaggcaaggg taaaaactca cttccgcttt gctctttttg
     2281 ccactctagc gcttttaagc ttacttctaa atcttctcct tcaaaagcca aagttttgtg
     2341 aattaaatcc gtatctggga tgctttcaca atcaaaaatg caaatataac cttcattttt
     2401 catcattttt aacctttttt caaataattt tgctaaaatc atagcaaaaa tttaaaaatt
     2461 ttaggtttta atgaaaatag caatcattcg tttatcagcc cttggggata ttatccaaag
     2521 tgctgtggtt ttacaattta tcaaaaaatt taaaaaagat atagaaattc attggtttgt
     2581 ggatgaaaaa tttgaaggca tactcaaaaa tcatccccta atcgataaac tttatgcttt
     2641 gcctctaaag gacaaaaaaa tcattcaaag tttaaaaata cttttagagg ctagaaaaaa
     2701 taattataat gcggttatgg atcttcaagg gcttgtaaaa tcggctattg tgagtagaat
     2761 tttaagtaga aataattttg gttttgataa aaacagcctt aaagaaagct ttgcgcataa
     2821 tttttacaac caaaaattaa acatagatta taatgaaaat gtttttgtaa gatatctgag
     2881 tctaacttct ttcatgctga ataagtattt tgatcctaaa gatctagctt ttaaagaaga
     2941 tgtttttagc gtggatgaaa aattaaaaca actcttaagc gaaaaaatgc aacttacaaa
     3001 aaataaaaaa aacatactca tccatgtggg atcaagtgaa gaaaataaaa tctatcctaa
     3061 aaccaagctt gcactacttt gcaaactcat catcaaagaa tttcctgaaa taaaaatttt
     3121 cttaggctgg ggcaatctta aagaatatga atttgctaaa gaagtcatag agctaggcgc
     3181 tataagtcaa gacaatatag aaatagctcc taaatttagt cttgaagaat tgatagtttt
     3241 tacaaaatcc atggatttaa tcataggaaa tgatagcggc ccaacgcatc tagcttttgc
     3301 tttaaatagg ccttctataa ccatctttgg tgcaacgcca agctaccgca atgcttttaa
     3361 aaccaatatc aataaaatta tcgatacagg taaaaaaatc acaaatgcaa aacatcttga
     3421 taaaagcgac ttttgtataa gtactatcga agaagaggat atcttaaaac ttgtcaagga
     3481 acttttcgga gatgaataaa gattatcttt accttagtgc ttattatata cttaaatttt
     3541 tagtctatac tatgcctcat tttattttaa atttccttgc tttttgtgtt tcaaagatcg
     3601 tttttaaact cgataaaaaa catagaaaaa tcatagatat aaatttaaaa ctttgctttc
     3661 cctataaaga tgaaaatgaa agaaaagaac ttgcttttaa aatttataat aattttgcca
     3721 aatttggatt agattgcatt aaaaaccaaa acacaagtaa agaaaaaatt ttagctaaag
     3781 tcgtctttga caatgaagaa attttaaccc aagccttaaa ggagcaaaaa ggggtgattt
     3841 tcgctactgc tcattatgga aattgggagc ttttaagtct tgcttatgct gctaaatttg
     3901 gagcgatttc catagtgggt aaacaactca aaagtcaaag aatgaccgaa cttttagcta
     3961 aaaatcgcac tcaatttgac atagagctta tcgataaaaa aggtggactt agaaaaatgt
     4021 taagtgctat taaaaacaag cgtgcacttg gcatacttac agatcaaaat tgcaccgata
     4081 atgaaggggt taggcttgat ttttttggta aaagagtaaa ttatcaagca ggagctagca
     4141 tcttagccaa aaaaacagga gctttgatca tacctgctta tatttatcaa ggagaggatg
     4201 aaaaatttca cattaaattt ttcaaaaccc ttgatccttt aaactctagc ctagaagaac
     4261 ttacaaaata ccaagcaaaa acttgtgaag aaatgatcca atttaagcct gatgagtatt
     4321 ttttctttca tcgtcgtttt gcaagctatg atgaaaaact ttacaaaggt atcaaatgaa
     4381 tcttgaaaaa ataagcgtta tcatcatagt taaaaatgct caaaataccc tctttgaatg
     4441 tttaaattct ttaaaagaat ttggagaaat catactttta aacaatgaaa gcaccgatga
     4501 taccttaaaa attgccaaag aatttcaaaa agattttacg catttataca tttacgaaag
     4561 caaatttata ggctttggag ctttaaaaaa tcttgcttta agccatgcta aaaatgaatg
     4621 gattttaaac atagatgcgg atgagatttt agaaaacgaa gccaaagaag aattaaaaaa
     4681 acttgaattt aaagagcaaa atatcctagc tttaacgcgc aaaaaccttt acaaaggaga
     4741 atggataaaa gcttgtggct ggtggcctga tcatgtttta agagtgttta ataaaaaaca
     4801 tacaaaattt aatgaaaact tagtccatga aagcttgatc ttatacccaa atactcacaa
     4861 aatttatctt aaaaatggac taaggcattt tgcttttgaa agtattgatg acttgcttga
     4921 caaacttcaa aaatactcca agctttgggc tttgcaaaat ttacacaaag aaagtggaat
     4981 ttgcaaggct ttggtgcgtg ggttttggac tttttttaga aattatgttt taaaaaaagg
     5041 aattttttac ggatataaag gctttatcat aagtgtatgt aatggtttgg gagctttttt
     5101 taaatatatg aaactatatg agctaaaaaa gcaaaagcca aaaacttgcg ctttaataat
     5161 aacaacttat aatcaaaaag aacgccttaa attagtgctt gatagtgtta aaaatctagc
     5221 ctttttaccc aatgaagttt taatcgcaga tgatggtagc aaagaagata cagcaaggct
     5281 tattgaagaa tatcaaaaag attttccttg tgtattaaaa catatttggc aagaagatga
     5341 gggttttcgt gctgcaaaaa gtagaaataa tgctattaaa gcttctaaaa gtgaatatat
     5401 aattttaatt gatggtgata tgattttaga aaaagacttt gtaaaaaatc atttagaatt
     5461 tgcaaaacgc aaagtaattt tacaaggttc aagagtaatt ttaaataaaa atgaaagcga
     5521 agaaatctta aaaaacaata attatagttt agcttttaat aaaaaagatt ttaaaagttc
     5581 taaaaattct tttttagcta aaattatcta taaattttca aaaatagagc aaaaattttt
     5641 tgataccaag gaaatagtaa ggggcagtaa aacctgtaat atgagttttt ttaaaactga
     5701 ttttgatgag cttgatggtt ttaatgaaaa ttttattggt tggggtagag aagatagtga
     5761 atttgtagct agatttttat ttaataaagg catttttaga cgcttaaaat ttaaagctat
     5821 tgcttatcat atttatcaca aagaaaatag caaaaaaatg ctcgaataca accataaaat
     5881 ttatttagat accatacaaa ataaaaagat ttcttggaaa ggttaaaatc aatgaaaaaa
     5941 gttggtgtga ttgtacctat atacaatgta gaaaattttt taaaagaatg cctagaaagc
     6001 ataattaatc aaagctttaa caatttagaa atcatactag ttaatgatgg aagcactgat
     6061 aaaaactctt ttgagatcgc aaaagagtat gccttaaaag atcaaagaat cactcttttt
     6121 gataaagaaa atggagggct tagttcagct agaaatacgg gactcgaata tttttataaa
     6181 gaatataagc ttgagttttc agatgaaaaa gatgattttt atacttttat aattgccaat
     6241 gaaaatccac aaaatgttta taaaatttac aaaagaaaaa atgcttgcaa agataaaatt
     6301 ttaaaaattc ctaatattga ttacttaatt tttttagatt ctgataattc ttgggaaaaa
     6361 gattgcataa aagagtgtgt taaaaaaatg caaggtatag atgtattatg gtttgatcat
     6421 ctatgtattt acgaaaaaga aattaaaaac aaagggcaaa atacaagaat gcaaattttt
     6481 caatataaag aagaatgtat tataagccca aaagattatg cccaaagagc tctaaaagtt
     6541 ggttcaagag atatttcctt tagttggggt ggaatgattg attttaattt tttaaaacaa
     6601 attaagctta aatttataaa ttatattatc aacgaagata tacattttgg catggttctt
     6661 tttgctagcg cgaacatgat ttatgtctta ccaaaaaaac tctataaatg cttacttaga
     6721 acaaatagta tttcaaatca tgataaaaaa gtaaccaaag ccaatatttc tcattattat
     6781 aaagatattt atagagcttt tgatgaagat gccaaactag ctaaagaata tttaaaacta
     6841 gcaagcagag taattaccat gttaaaactc atagatttct ttcaaaataa actagaaaac
     6901 gaaaatagta aagctataaa agaagttttt ttaccatttt atgcaaaaaa ggctttgaaa
     6961 tttaacaaaa caaatcttga tcctttaaat cttaaaaatg aactagataa aatcaagccc
     7021 tttgcacaca atattttacc ttatgatata tggaaaattt tacaaagaat taaaaatatt
     7081 tttaattaac ttgcataatg attttatcta tataagaatc tttttttaca cttctaaaat
     7141 gcgttagttt atgtaaaaaa ctttgttttt taatctcctc ccaaagcttg ttatcaaatt
     7201 tatccttagc ataaaattgc aataaatggc attctatatc acttttattt tcaaagattt
     7261 catttttaat ataaccattt cgttttagaa gttcaaataa aatttgctga gtaaaataat
     7321 aaaaatattt tgagttttct tctttttgcc aaaaatatat caataaatct cttaaaacac
     7381 taacaatttt attattttct tttgctatta aaaaactgtt tagaagtcta accataaaat
     7441 catcattcca attaaagtaa ccgtaggaaa aatatggact tttgataaac ttttttagtt
     7501 ctttcttatt tggtctatgt cttgctcttt caaaagcaaa aaattcccta tttcttagat
     7561 cttgcggaat tttatcgctt aaaaatatac ttgcatcgca ccaaatccct ccataagtag
     7621 ccaataaaca tacccttaaa agatcagaaa aaaatactat agttttttct ccaaaagtct
     7681 tttttttgat tttttcaagt acaaagtctg gaaattctaa ataattttct atattttttt
     7741 catttaaaat gataatttta tactcactac ccatatgctt ctttaccgat ttaaaacatt
     7801 gccgtatcat atagcttgca ttttcctcgc cttgaaacca taattgccat ataattttat
     7861 tgtctttaaa atcttgcttt ttcttaaaaa cgaatgaagg aattttgcct ttaaaaaagg
     7921 gttgtatata attttcatct aaatacttac ttacttttgg atgatctatt ttgtaagata
     7981 tatgagccct taattttctt cttaaaggtt ttataggaat taaattggtt aaa
//
LOCUS       DBBXRO010000073         7885 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.074, whole genome shotgun sequence.
ACCESSION   DBBXRO010000073 DBBXRO010000000
VERSION     DBBXRO010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7885
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.074"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            46..921
                     /gene="cmoB"
                     /locus_tag="ACJFEZ_001223"
     CDS             46..921
                     /gene="cmoB"
                     /locus_tag="ACJFEZ_001223"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HGG0917342.1"
                     /translation="MQENPLEKQFLNHPLFSKIQNLKEVELDSKLYLEDSVTLKTNSQ
                     AKKEILELTKELKPWRKGPFKIDELFIDTEWQSFIKFNILKPFMSEISQKCVADIGCN
                     NGYYMFKMLEFNPKKLIGFDPSIKYRLQFELINTLAKTPIKYELLGVEDLPKYGLKFD
                     VIFCLGVIYHRSDPIKMLKDLKAGLNKNGTVFLDTMYIEDPREIALVPNKTYSKIPNI
                     YFVPSISALKNWCERAGFKYFEVLATKTTDENEQRKTEWIDSFSLENFLDPNDKNLTI
                     EGYEAPKRVYVRIKV"
     gene            998..1573
                     /locus_tag="ACJFEZ_001224"
     CDS             998..1573
                     /locus_tag="ACJFEZ_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HGG0917343.1"
                     /translation="MAKKDIFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     ELDKNFAKSILITTSDMVVDEQGLVFDAFIFAAANYVAQASINKEFSVVIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEIKMFEATIQVVSIDEHIFKLKRPPL
                     NTAKAAENPDSPTSTVNPEAIGSALSASLRK"
     gene            complement(1578..1751)
                     /locus_tag="ACJFEZ_001225"
     CDS             complement(1578..1751)
                     /locus_tag="ACJFEZ_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917344.1"
                     /translation="MKKYILMLALLFGISGCFVNERGISNRFYDDCHEYYDASGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(1761..2288)
                     /locus_tag="ACJFEZ_001226"
     CDS             complement(1761..2288)
                     /locus_tag="ACJFEZ_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HGG0917345.1"
                     /translation="MRINYKKLFNLRKIASDPKKLLAFLIFALMIAFVQNYIVQNPSF
                     KAQVIRVIDGDTIEISTNNKTSKIRFFGIDAPELKQNFGKKSKAALEKILKDKEVYIF
                     SKNKDNYGRIVAIVKLKDVDINQFLVSQGYAWADTYYTNAYIKEQEKAQKNKLGLWKD
                     DNPIEPYKWRKQNRF"
     gene            2344..3612
                     /locus_tag="ACJFEZ_001227"
     CDS             2344..3612
                     /locus_tag="ACJFEZ_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HGG0917346.1"
                     /translation="MQNVIENFKNLCKIPHCSYQTEQMKEFLSSYAKDKGFKVSIDKA
                     GNIHAIKGNPKICLQSHYDMVCMGEAPKVEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLSSKMLLNLDHESDDEIMIGCAGGVDIEA
                     ELSFSTLKARGKIYELQAQNFKGGHSGINIVRNEKSSIKEMAQFIKENKGKIISFEGG
                     ERINSIPKHAKALVHFENEVKGNGWIKCEFKEEGEFEICDQNEKLLNTINAFAHGVRA
                     YDEHLSIVQTSINLATLKMENQQIKFTLFARSNILDGLKQIEFETMEFFKAFGYKVRS
                     FNFYPPWEGKANALSDKVLKALKKVSPKARVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEITSVEKISRVVFEVLKDNA"
     gene            complement(3595..4842)
                     /locus_tag="ACJFEZ_001228"
     CDS             complement(3595..4842)
                     /locus_tag="ACJFEZ_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917347.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDTFW
                     MQINAYIAFGAAYLARPFGSIVMAHFGDRYGRKNIFYISMLFMVLPSFALVFLPSYES
                     IGILATLILFLIRILQGLAVGTEVSGAWVYVSEFVKGRQVPLALGFISATLTIGLLLG
                     NLATLGIRSYFSAQEVEEYAWRIPFIVGGFFGFFALFLRTKLSETPEFERIKKENRLL
                     NFPLKDALKTYKTSMLVCFLMTVVLTSGVATLMILPKYLEELLSINKTSALWIQNFAI
                     LAVILGALIQGILASKWGSYRICSIFSITFMFFGMLFSFYDANFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYALLGFLTPFIVNAFYKEYMGVYLMVVGCCS
                     LFSVFLLKRIFARSEAKELSIVF"
     gene            complement(4884..5723)
                     /locus_tag="ACJFEZ_001229"
     CDS             complement(4884..5723)
                     /locus_tag="ACJFEZ_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HGG0917348.1"
                     /translation="MKKMLLSIFTTFVAVFLAACGGNSDSGASNSLERIKQDGVVRIG
                     VFGDKPPFGYVDEKGVNQGYDIVLAKRIAKELLGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPERAEQVDFCLPYMKVALGVAVPQDSNISSIEDLKDKTLLLNKGTTAD
                     AYFTKEYPDIKTLKYDQNTETFAALIDQRGDALSHDNTLLFAWVKEHPEFKMAIKELG
                     NKDVIAPAVKKGDKELKEFIDNLITKLGEEQFFHKAYDETLKSHFGDDVKADDVVIEG
                     GKI"
     gene            5921..7024
                     /locus_tag="ACJFEZ_001230"
     CDS             5921..7024
                     /locus_tag="ACJFEZ_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_057993207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA family lipoprotein adhesin"
                     /protein_id="HGG0917349.1"
                     /translation="MKKSIALTLGTIFFFSACSNSLDKTTVAKYEERLNTQINETLKD
                     FQQDMGVRIEISNFSCKGDGMFLRCSSPNFNVFAKDNTQTEQKLIEAKNLEIYSNEIY
                     TGEEQGLISLKDYYDNLLSKNKNLKTSFTLEGFKLGEKVISDINASLSQSDPKIQDYL
                     AKLSSGVFTLSFENSLFVKNSDYNNNFNMKINNQDLNFDMNLNFDYKQSLLDFFEKAG
                     IKYNTQTYAIDEKAVEELLDQQGFAQPIQESVILNNFKINSSLDTQGVFENYITIAKG
                     GLEALKIQSQNEEQTLLIDKALLALNEITKDEVYKLDLEAKFKPIALSDYPKEGINAV
                     EKLTVNNQDFTETLRILFGFMMIPIMLGGATGF"
     gene            7134..7874
                     /locus_tag="ACJFEZ_001231"
     CDS             7134..7874
                     /locus_tag="ACJFEZ_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaA family protein"
                     /protein_id="HGG0917350.1"
                     /translation="MKILFSPSESKNDTCKEKPIDKSSFIFENLFDFRMQAVKKYEEY
                     INNADLKALQELFGIKNENEISNFQRDLKNSPTQQAITLYSGVSYEYLNFDILDKESQ
                     KYILENTLIFSNLFGVVKASDHLPFYKFKQGAKINNFALEKFYKEHFSKALDEYLKNE
                     ELLDLRAGFYDKFYTPKRKFSTYKFIKKGKVVSHFAKAYRGILLALCARIKAKNNAEI
                     LNHLPSNLSLKEIQNKGLKEEIVLEILD"
BASE COUNT         2963 a         1259 c         1161 g         2502 t
ORIGIN      
        1 aattgttttt gttattattc taaaattaga ttatcaagga aaaatatgca agaaaatcca
       61 cttgaaaaac aatttttaaa tcatccccta ttttctaaaa ttcagaattt gaaagaagtc
      121 gaactggatt ctaagcttta tttagaagat agtgttaccc taaaaacaaa ctctcaagca
      181 aaaaaagaaa ttttagaact cacaaaagaa ttaaaaccat ggagaaaagg tccttttaaa
      241 atagatgaac tttttatcga tacggaatgg caaagcttta ttaaattcaa tatcttaaaa
      301 ccctttatga gtgaaatttc tcaaaaatgt gttgctgata ttggttgcaa taatggctat
      361 tatatgttta aaatgcttga atttaatcca aaaaaactta taggctttga tccttcaatc
      421 aaatatcgct tacaatttga actcataaat actcttgcta aaactcctat aaaatatgag
      481 cttttaggcg tagaagattt gccaaaatat gggttgaaat ttgatgtgat tttctgtctt
      541 ggagtgattt accacagaag cgatcccata aaaatgctaa aagatttaaa ggcgggatta
      601 aataaaaatg gaactgtatt tttagatacc atgtatatag aagatccaag agaaattgcc
      661 ctagttccta ataaaaccta ttctaaaatc cctaatattt attttgttcc tagcattagc
      721 gctttaaaaa attggtgtga aagagcagga tttaaatatt ttgaagtcct agctacaaaa
      781 acaacagatg aaaatgaaca aagaaaaaca gaatggattg attctttttc tttggaaaat
      841 tttttagatc caaacgataa aaacctcact attgagggct atgaggcacc taaaagagtc
      901 tatgttcgca taaaggtata aattttttaa ttactaagcc gatatagcat caagaaatgt
      961 tttgaagtag ataatataga acaccaaagg cgcaaaaatg gcaaaaaaag atatttttga
     1021 agaatatgca caacttgaag aatatgcatc cgctgaggat atctctcgtg taagagctga
     1081 acttttaact tgtccagaac tcaatacctc cttagcagga actattatcg agcttgataa
     1141 aaattttgca aagtcgatac tcatcactac aagcgatatg gttgtagatg aacaagggtt
     1201 agtttttgat gcttttattt ttgctgctgc aaactatgtc gcacaagctt caatcaataa
     1261 agaattctct gttgttatcg gttcaaaatg tttcttttat gctccactta aattaggcga
     1321 tgttttagaa cttgaagctc atgctttatt tgatgaaact tctaaaaagc gagatgtaaa
     1381 agttgtagga catgtaaaag agattaaaat gtttgaagca accatacaag ttgttagtat
     1441 agatgagcat atatttaaac tcaagcgacc tcctcttaat acagccaaag cagcagaaaa
     1501 tcctgattcc ccaacaagca cagtaaatcc tgaagcgata ggatcagcat tatcagcatc
     1561 tttacgcaaa taaatcatca aggagtcatt ttaatatcta cccaattttt agggcagtcc
     1621 ttatgataag ttccacttgc atcataatat tcatggcaat catcataaaa ccgatttgaa
     1681 atgcctcttt catttacaaa acatcctgat attccaaaaa gcaaagctag cattaaaata
     1741 tattttttca ttacctgcct ttaaaatcta ttttgtttgc gccatttata aggctctatt
     1801 ggattatcat ctttccaaag acccagttta tttttttgag ctttttcttg ctctttaata
     1861 taagcattgg tgtaatatgt atccgcccaa gcatatcctt gactcactaa aaactgatta
     1921 atatccacat ctttaagctt tacaatagcg acaattctac cataattatc tttgttttta
     1981 gaaaaaatat aaacttcctt atcttttaaa attttctcaa gtgctgcttt tgattttttg
     2041 ccaaaatttt gctttaactc aggcgcatct atgccaaaaa atcgtatttt actggtttta
     2101 ttgttggtac taatttctat ggtatcacca tcaatcaccc taatcacttg agctttaaaa
     2161 ctaggatttt gtactatata attttgtaca aaagcgatca ttaaagcaaa aatcaaaaat
     2221 gctaaaagtt tcttaggatc gcttgcaatt tttcttaaat tgaataattt tttataattt
     2281 attctcatta tttccttaaa tttttaaaaa tatgccataa ttttaacaaa aaaaggagat
     2341 ggaatgcaaa atgttataga aaattttaaa aatttgtgca agattccaca ttgtagctat
     2401 caaacagaac aaatgaaaga atttttaagc tcctatgcta aagataaagg ctttaaagta
     2461 agcatagata aagcaggaaa tattcacgct attaaaggaa atcctaaaat ttgcctccaa
     2521 agtcattatg atatggtttg catgggagaa gctccaaaag tagaagtata tgaagaaaat
     2581 ggctttttaa gagctaaaaa ttcaagtctt ggagcggata atggcatagg aatagccatt
     2641 atgatgagcg ctatggctga atttgaaaat ctagaatgcc tttttacaaa tgatgaggaa
     2701 gtcggactca tgggagtaaa ttcactcgag cacactttaa gttccaaaat gcttttaaat
     2761 ttagaccatg aaagcgatga tgagatcatg ataggttgtg caggtggagt agatatagaa
     2821 gctgagctaa gctttagcac tcttaaagca agaggtaaaa tttatgaact tcaagcacaa
     2881 aattttaaag gggggcattc agggatcaat atcgtgcgca atgaaaaaag ttctatcaag
     2941 gaaatggctc aatttatcaa agaaaataaa ggaaaaatca tctcttttga aggtggagaa
     3001 aggataaatt ctatccctaa gcatgctaaa gccttggtgc attttgaaaa tgaagtaaaa
     3061 ggcaatgggt ggataaaatg cgaatttaaa gaagaaggtg aatttgaaat ttgcgatcaa
     3121 aatgaaaagc ttttaaatac catcaatgct ttcgcacatg gagttagagc ttatgatgaa
     3181 catttgagca tagtgcaaac tagcatcaac ctagccactt taaaaatgga aaatcaacaa
     3241 atcaaattta cactttttgc aagatctaat atattagatg gtttaaaaca gatagaattt
     3301 gaaaccatgg aattttttaa agcttttggc tataaagtaa gaagttttaa tttttatccc
     3361 ccttgggaag gcaaagctaa tgcactgagc gataaagtac taaaagctct taaaaaagta
     3421 tcgcccaaag ctagagtttc ggctatccat gcaggattag aatgcggcat catagaaaaa
     3481 aaacaagaac ttttatgtgc ttctataggg ccaaatatcc acaatcccca ctcaactgat
     3541 gagcactgcg aaatcacttc ggtagaaaaa atatctagag ttgtttttga agttttaaaa
     3601 gacaatgctt agttcttttg cctcgctcct tgcaaaaata cgcttaagta aaaatacgct
     3661 aaataaggag cagcatccta ccaccataag atagacaccc atatattctt tataaaaagc
     3721 attgactata aaaggggtta aaaagcctaa aagtgcataa gaaatattat aagcaaagct
     3781 aagtccactg aatttaagtt cacttttgaa aatttgagtc ataaaaacag gagcaaaagt
     3841 aataattcct tgagcaaaac aagcaagtaa aaaataaaat aagaaatttg catcataaaa
     3901 actaaaaagc atgccaaaaa acataaaagt tatgctaaaa atagaacaaa ttctataact
     3961 tccccacttg ctagccaaaa ttccttgaat caatgcccct aaaataacag ccaaaatagc
     4021 gaaattttgt atccataaag ccgaggtttt atttatagac aataactctt caagatattt
     4081 tggaagtatc atcaaagttg ctacaccgct ggttaaaaca acggtcatta aaaagcatac
     4141 taacatgctt gttttataag ttttaagtgc gtcctttaaa ggaaaattta aaagtctatt
     4201 ttcttttttt attctttcaa attcaggagt ttcgctaagt tttgttctta aaaataaggc
     4261 aaaaaatcca aaaaatcctc ctacaataaa aggaattctc caagcatact cttcaacctc
     4321 ttgcgcgcta aaataagatc ttatccctaa agtggcaaga tttcctagca ataaacctat
     4381 agtcaaagtt gctgaaataa aacctaaagc taaaggaact tgacgccctt taacaaattc
     4441 acttacatat acccaagctc cacttacttc tgtccctaca gctaagcctt gtaaaatgcg
     4501 aattaaaaat aaaatcaatg tagcaagtat acctatactc tcatagcttg gcaaaaacac
     4561 caaagcaaaa ctaggcaaaa ccataaaaag catagatatg taaaaaatat ttttacgccc
     4621 gtatctatcg ccaaaatgcg ccataacaat agatccaaaa ggacgcgcca aataagcagc
     4681 accaaaggct atataagcat ttatttgcat ccaaaaagta tcattttgag gaaagaaaac
     4741 cttagcaaaa atatccaaaa aaaaggcaaa gagcacaaaa tcataaaatt ctaaaattcc
     4801 gcccaaagaa gcataaatta tatttttgta ttttttttgc atattttatc ctaaatcaac
     4861 taaagggcaa aagccctttt ttgttaaatt ttaccgcctt caataactac atcatcggct
     4921 tttacatcat ctccaaaatg actttttaaa gtttcatcat aagctttatg gaagaattgt
     4981 tcttctccta attttgtgat tagattatca ataaattctt taagctcttt atcacctttt
     5041 ttaacagcag gagcaattac atctttattg cccaattctt taatggccat tttaaattca
     5101 ggatgttctt ttacccacgc aaaaagcaaa gtattgtcat gacttaaagc atcacctctt
     5161 tgatctatta aagcggcaaa agtttcggta ttttgatcgt attttaatgt tttaatatca
     5221 ggatattctt ttgtaaaata cgcatcagca gtagttcctt tgtttaaaag taaagtttta
     5281 tcttttaaat cttctatgct actgatattg ctatcttgag gcacagccac acctaaagct
     5341 accttcatat aaggtaagca aaaatccact tgctctgctc tttcaggtgt ttgagtaaaa
     5401 ttagctaaaa taatatcaac tttatttgat tttaaaaatt ccaccctatt tgcagcttca
     5461 actaatacaa actgcacctt attttcatct cctaagagtt cttttgctat acgtttcgcc
     5521 aagactatat cataaccttg atttacgcct ttttcatcta cataaccaaa aggcggttta
     5581 tctccaaaaa ctcctattct tactactcca tcttgcttga ttctttcaag agaatttgaa
     5641 gcaccagaat ctgaatttcc tccacaagca gccaaaaata ctgcaacaaa ggttgtaaaa
     5701 atacttaaga gcattttttt catacttttc ctttcttggt ataaacccta atttattttg
     5761 caaaaaatgc aaaagcatta tactttaaaa aaaagcatat ttcaattttt taagataaaa
     5821 ttatttcttc ttgtgtaaaa aagtaatatc aatatcaaag cataaaaatt taagtataag
     5881 attgttataa tttataaaac tatattaagg agaagatttt atgaaaaaaa gtattgctct
     5941 aaccctaggt actatatttt tcttttcagc gtgcagcaac tcgcttgata aaacaacagt
     6001 tgcaaaatat gaggagcgtc ttaacactca aataaatgaa acccttaagg attttcaaca
     6061 agatatgggt gtaagaatag aaatttctaa tttttcttgt aaaggcgatg gaatgtttct
     6121 tagatgttca agccctaatt ttaatgtttt tgcaaaagac aatacccaaa cagagcaaaa
     6181 actcatcgaa gcaaaaaatt tagaaattta ttctaatgaa atttacacag gagaggagca
     6241 aggcttaatc tctttaaaag attattacga taatctattg agtaaaaata aaaatttaaa
     6301 aacaagtttt accctagaag gatttaaact tggagaaaaa gtaatcagcg atatcaatgc
     6361 aagcttatct caaagcgatc caaagattca agattatctc gctaaactta gttcaggtgt
     6421 ctttacactt tcatttgaaa attcactttt tgtaaaaaat agcgattata ataacaattt
     6481 caacatgaaa ataaacaatc aagacttaaa tttcgatatg aatttaaatt ttgactacaa
     6541 acaaagcttg cttgatttct tcgaaaaagc aggaattaaa tacaatacac aaacctatgc
     6601 aatagatgaa aaagccgtag aagaacttct agatcagcaa ggatttgctc aacctataca
     6661 agaaagcgtt atcttaaata attttaaaat taactcttct ttagataccc agggtgtttt
     6721 tgaaaattat ataacaatcg ctaaaggtgg cctagaagct cttaaaattc aaagtcaaaa
     6781 tgaagaacaa accttgctta tagataaagc tttgttggct ctaaatgaaa tcacaaaaga
     6841 tgaagtctat aaacttgatt tagaagctaa atttaaacct attgcattaa gtgattatcc
     6901 taaagaaggt attaacgcag tagaaaagct aactgttaac aatcaagact ttacagaaac
     6961 acttagaata ctttttggct ttatgatgat acctataatg cttggaggtg caacaggctt
     7021 ttaagtaata tggagagaaa tctccatata ctcttttacc ttttttaagc ctagttttat
     7081 atatttttcg atacttttta gtctttaatt ttaaagattt aaaaaggaca aaattgaaaa
     7141 ttttattctc tcctagcgaa agcaaaaacg atacttgcaa agaaaaacct atagataaaa
     7201 gctcttttat atttgaaaat ttatttgatt ttagaatgca agctgtaaaa aaatatgaag
     7261 aatatatcaa taacgctgat ttgaaagcct tgcaagaact ttttggtata aaaaatgaaa
     7321 atgaaatttc taattttcaa agagatttaa aaaattctcc tacccaacaa gctataacgc
     7381 tttatagcgg ggtgagttat gagtatttaa attttgatat tttagataaa gaaagtcaaa
     7441 aatacatcct tgaaaacact cttatttttt caaatctttt cggggtagtt aaagcaagcg
     7501 atcatttgcc tttttataaa ttcaaacaag gcgcgaaaat aaataatttt gctttagaaa
     7561 aattttacaa agaacatttt agtaaagctt tagatgaata tttaaaaaat gaagaactgc
     7621 ttgatttaag agcgggtttt tatgataaat tttacacccc aaagcgtaaa tttagtactt
     7681 ataaatttat aaaaaagggt aaggtagtta gccattttgc taaagcttat agggggattt
     7741 tacttgctct ttgcgcaagg attaaagcta aaaacaatgc tgagatttta aatcatcttc
     7801 catctaattt aagtcttaaa gaaattcaaa acaagggttt aaaagaagaa attgtgcttg
     7861 aaattttaga ttaatttcca aacac
//
LOCUS       DBBXRO010000074         7830 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.075, whole genome shotgun sequence.
ACCESSION   DBBXRO010000074 DBBXRO010000000
VERSION     DBBXRO010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7830
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.075"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1362
                     /locus_tag="ACJFEZ_001232"
     CDS             <1..1362
                     /locus_tag="ACJFEZ_001232"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HGG0917351.1"
                     /translation="KGKIYLYLLVLVLIGVLAFFISKTNAFETTPPKILMPDIIYSDL
                     KKPISVHVKDDEGSIESVQIFLQKEGNETGMLIADEKIQNSNDITLQVALPKLAYKEK
                     VKSFIMEIKAKDKSFWNFFGGNEASKQVLIMIDDSAPKVNVLSNSYQIEQGGAASVVF
                     SASDANLDKVYIETNTGKIFQATPYLKEGYYAALIAWDARDEEFRAYIIATDKAGNIT
                     KERIRYYFVNRKYRVSNINLTDRFLDGKIEDLAQEYAPKDNNFTRFEKFKFVNETLRG
                     NNEILIHKITSEVPESKIDDFKIDLFLPLRNGMKVADFADHRYYSYNGQFVSDSYHMG
                     IDLASVAEAPIISNNSGKVVFAEENGIYGLNLIVYHGFGVYSLYGHCSSKSVELDDIL
                     SKKSVIGRTGVSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNEGKKIIL
                     GKN"
     gene            1362..2246
                     /gene="lpxC"
                     /locus_tag="ACJFEZ_001233"
     CDS             1362..2246
                     /gene="lpxC"
                     /locus_tag="ACJFEZ_001233"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HGG0917352.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ATYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGDKYVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRDMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYISYAGSHHLNHLLTKEVLKDKDAY
                     EIVTLEKANEKAYEKVFA"
     gene            2285..2686
                     /locus_tag="ACJFEZ_001234"
     CDS             2285..2686
                     /locus_tag="ACJFEZ_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HGG0917353.1"
                     /translation="MIGIYQDDKLVKSIESEEKASEFVPKILKILLKEFSFDELIYAN
                     GPGSYMGIKISYVSLRTLSIVKNIPLFAISAFELNNNQPIAAHKNMCFVKKEDEIILE
                     ENTAGEFFLPPNLSKLNKKDDNLPFYFLSAI"
     gene            2704..3582
                     /gene="thrB"
                     /locus_tag="ACJFEZ_001235"
     CDS             2704..3582
                     /gene="thrB"
                     /locus_tag="ACJFEZ_001235"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HGG0917354.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLTLFNHTIIEKSNFFSISVNGE
                     GSENLSLKKNNIFVSIFNEIYQRLSGRKDHFRFIFDNAIPLSRGLGSSSAVIIGAIAS
                     AYEMAGFKAEKEKILNEALKYENHPDNIAPAALGGFVVSMVENEKVFSIKKDLDENLN
                     AVVVIPNVAMSTEQSRNALPSNLSLKDCVFNLCHSSFLTACFLEKKYDLLALASKDLL
                     HQTRRMQNLPELFEVQKFALENKALMSTLSGSGSSFFNLAYKDDAKHLAQKMEQKFRN
                     FKILCLEFDNKGFKIC"
     gene            3636..3869
                     /locus_tag="ACJFEZ_001236"
     CDS             3636..3869
                     /locus_tag="ACJFEZ_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF448 domain-containing protein"
                     /protein_id="HGG0917355.1"
                     /translation="MCIVCKNRYLQKNMHRFKHFQGELYKDFAFGRSVYLCETCILSE
                     GKVLQKAFFKSCKNLNTKITQQNLKEIVLNGKN"
     gene            3856..6426
                     /gene="infB"
                     /locus_tag="ACJFEZ_001237"
     CDS             3856..6426
                     /gene="infB"
                     /locus_tag="ACJFEZ_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HGG0917356.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLNIKTASNAVEPEVAA
                     GIYEYIQTKIIPEAFKKNLKQDPVKKAKAAPKEEKKEEKSPKEVETKAPAKVVEEVKP
                     EPKTPEEPKENIQESLASATLAKRRGLVIVKKKKDEEEAAKKEEPKASTPSNDERLSL
                     KTMFSNADENLKKKKKEKKPFVATKKESAEKMDFLEGHDFADISLEDEDVVVLPDFSV
                     KEQEKPQNTMKKPPNFLRQAVGNSANLGLEGGIQRRSRKKPPKKVEKKENEAVSSVEI
                     SKEIRVYEFADKIGKSVSEVISKLFMLGMMTTKNDFLDEDAIEILAAEFGIEINIINE
                     ADEFDYVKDYEEEVDEKDLVSRAPVITIMGHVDHGKTSLLDYIRKSRVASGEAGGITQ
                     HVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVVAADDGVKPQTKEAIN
                     HAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGSYEFVGVSAKTGMGIE
                     DLLEIVLLQADILELKANPKSFAKASVIESSIQKGRGAVATIIVQNGTLKVGSTIVAG
                     EAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIAVKSDKEAREYANKRH
                     EYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSLEALKASLEKLRNDEI
                     KVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEIKERAKDKGVEIKTYNVIYN
                     LLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCMVTEGVINRGAKIRLI
                     RDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVGDYIESYKEVEEQASL
                     "
     gene            6423..6785
                     /gene="rbfA"
                     /locus_tag="ACJFEZ_001238"
     CDS             6423..6785
                     /gene="rbfA"
                     /locus_tag="ACJFEZ_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HGG0917357.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            6775..7218
                     /gene="rimP"
                     /locus_tag="ACJFEZ_001239"
     CDS             6775..7218
                     /gene="rimP"
                     /locus_tag="ACJFEZ_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HGG0917358.1"
                     /translation="MNLEALCKEVNLELYDSKLTSENGKKIYRVYVMKPLDEKGERRG
                     VNLDDCARLSEILSPIFDVEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITT
                     GEKEKIEAKIISVEDENITLENLENQEKTTLKFSDIKKARTFIQW"
     gene            7291..7578
                     /locus_tag="ACJFEZ_001240"
     CDS             7291..7578
                     /locus_tag="ACJFEZ_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917359.1"
                     /translation="MLEDKYDWKISKADQNGNVYYYFPKDSDEFKEAVVKNGGMSVYV
                     YQDDKLIDEFHTKSQGYRWKTPIFTYIKNMNKDREKFRRYYKNCKFFAIVD"
     gene            7650..>7830
                     /locus_tag="ACJFEZ_001241"
     CDS             7650..>7830
                     /locus_tag="ACJFEZ_001241"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917360.1"
                     /translation="MKNTVFVFEDNIIFEINIFEKSNKEDFRYFLDENSNLTKSTKND
                     YCGSKTKKFFQRLYAD"
BASE COUNT         2920 a          982 c         1601 g         2327 t
ORIGIN      
        1 aagggaaaaa tttatttata tttgttagtt ttggttttaa tcggtgtttt ggcgtttttt
       61 atttcaaaaa cgaatgcttt tgaaacaaca cctcctaaaa tccttatgcc agatatcatt
      121 tatagtgatc ttaaaaaacc tatttcagtt catgtaaaag atgatgaagg ttctattgaa
      181 agtgttcaga ttttcttgca aaaagaaggc aatgaaacag gtatgcttat agcggatgaa
      241 aaaattcaaa attcaaatga tattacctta caagttgctc taccaaaact tgcctataaa
      301 gaaaaagtaa aatcttttat catggaaatt aaagccaaag ataagagttt ttggaatttt
      361 ttcggtggca atgaagcgag caaacaagtc cttatcatga ttgatgatag tgctccaaag
      421 gtaaatgtat tgagcaattc ttatcagatt gagcaaggag gtgctgctag tgttgtgttt
      481 tcagctagtg atgcaaattt agataaggtt tatatcgaaa caaatacagg aaaaattttt
      541 caagctactc cttatttaaa agaaggctat tacgcagctc ttatagcttg ggatgcaaga
      601 gatgaagaat ttcgtgctta tatcattgct acagataagg caggaaatat aaccaaagag
      661 cgcataaggt attattttgt caatcgcaaa taccgcgttt caaatatcaa tcttacagat
      721 agatttttag atggcaaaat agaagattta gcacaagaat atgcgccaaa ggataacaat
      781 tttacgcgtt ttgagaaatt taaatttgta aatgaaacct taagaggcaa taatgaaatt
      841 ttgatacata aaatcacttc agaagtgcct gaaagtaaaa tcgatgattt taaaatcgat
      901 ttatttttac cacttcgaaa tggtatgaag gtagcagatt ttgctgatca taggtattat
      961 tcttacaatg gacaatttgt aagcgattct tatcatatgg gtatagattt agcaagcgtg
     1021 gcagaagctc ctattataag taataattca ggcaaagtcg tatttgcaga agaaaatgga
     1081 atttatggac tcaatttaat cgtctatcat ggttttggag tttatagtct ttatgggcat
     1141 tgttcttcta aaagtgttga acttgatgat attttaagca aaaaaagtgt aataggtaga
     1201 acaggtgtaa gtggattggc tttgggggat catttgcact ttggtgtttt agttcaaggt
     1261 gttgaaacac gccctgagca atggcaagat aaaaaatgga tagaaaataa tatttacaat
     1321 gttttaaacg aaggtaaaaa aataatttta ggaaaaaatt aatgaaacaa ttaactttag
     1381 caaaaactgt caaaggcgta ggtataggac ttcacaaagg tgagcctata gaaatcactt
     1441 tagagccttt agaagcaaat agtgggatag ttttttttag aagcgattta aatgctactt
     1501 ataaagcaag ccctgaaaat gttatcaata ctcaaatggc aacggttttg ggcgatgaaa
     1561 ggggatttat ttctactata gagcatttaa tgagtgcaat caatgcttat gggatagata
     1621 atgtccgcat cgttttaaat gctaatgaag cacccgtaat ggatggatca agcattagct
     1681 tttgtatgat gcttgatgaa gcaggggtta aagagcttga tgcacctaaa aaaattatgg
     1741 tgattaaaaa gcctatagag gtaagagacg gtgataaata tgtgcgttta actccgacca
     1801 aagaaccgcg tattaattat actatcaagt ttgataatgc tgttataggc gaacaaagct
     1861 ataattttga attcagtaag aaaaactata tagaaaatat agcaagagct aggacttttg
     1921 gctttttaaa agatgttcaa gcccttagag atatgaattt agcattgggt ggaagtttag
     1981 aaaatactat agtggtagat gaaaatcgta ttttaaatcc tgaaggtttg cgctttaaag
     2041 atgaatttgt aagacataaa attttagacg cgattggaga tttgactttg cttgggtacc
     2101 gtgtttttgg agattatatt tcatatgctg gaagccatca tttaaatcat ttacttacta
     2161 aagaagtttt aaaagataaa gatgcttatg agatagtgac ccttgaaaaa gcaaatgaaa
     2221 aagcttatga aaaggttttt gcataaaaaa ttcattattg cttaatgcct tatctaagcc
     2281 tttgatgatt gggatttatc aagatgataa acttgtaaaa agcatagaga gtgaagaaaa
     2341 ggcaagcgag tttgtaccca aaattttaaa gattttgcta aaagaattta gctttgatga
     2401 attaatttat gccaatggtc caggctctta tatggggatt aaaatttctt atgtaagtct
     2461 taggactttg agtatagtga aaaatatccc tctttttgct atcagtgcct ttgagcttaa
     2521 caacaatcaa cccattgccg ctcataaaaa tatgtgtttt gtaaaaaaag aagatgagat
     2581 cattttggag gaaaatacag ctggagagtt ttttttacct ccaaatttaa gcaagcttaa
     2641 taaaaaagat gataatctac ctttttactt tttatctgca atttaaagaa tttaggaaaa
     2701 aaattgaaaa ttttagtacc tgctacaagt gcaaatttag gccctgggtt tgattgtttg
     2761 ggattgagtt taacactttt taatcatact attatcgaga agtcaaattt ttttagtatc
     2821 agtgtcaatg gtgaaggaag cgagaattta agccttaaaa aaaataatat ttttgtaagt
     2881 atttttaatg aaatttatca aagattaagt ggtagaaaag atcattttag atttattttt
     2941 gataatgcca ttcctttatc tcgcggactt ggcagctctt cagcagtgat tatcggtgct
     3001 attgcaagtg cttatgagat ggcaggtttt aaagcagaaa aagagaaaat tttaaatgaa
     3061 gcgttaaaat acgagaatca tcctgacaat atagctcctg cagcacttgg gggctttgta
     3121 gtatccatgg tagaaaatga aaaagttttc agtataaaaa aagatttgga tgaaaattta
     3181 aatgctgttg tggttatacc taatgtggcg atgagtacag aacaaagtcg caacgccttg
     3241 ccttcgaatt taagtttgaa agattgtgtt tttaatcttt gtcattcttc ttttcttacg
     3301 gcttgttttt tagaaaaaaa gtatgatttg ctcgctcttg ctagtaaaga tttattacac
     3361 caaacgcgta gaatgcaaaa tttacccgag ctttttgagg tgcaaaaatt tgctcttgaa
     3421 aataaggctt taatgagtac gctttcaggt tcaggctcaa gcttttttaa tttagcatac
     3481 aaggatgatg caaagcattt agctcaaaaa atggagcaaa aatttagaaa ttttaaaatt
     3541 ctttgtttag aatttgataa taaaggcttt aaaatttgct aaaagaagaa aaaaaaagat
     3601 ataattttgt aaaagataaa catgagccca ttcgaatgtg tatagtctgt aaaaatcgat
     3661 atttacaaaa aaatatgcat cgatttaaac attttcaagg tgagctttat aaagactttg
     3721 cttttggacg cagtgtttat ttgtgtgaga cttgtatttt gagtgaaggc aaagtcttgc
     3781 aaaaagcatt ttttaaatct tgcaaaaatt taaatacaaa aatcactcag cagaatttaa
     3841 aggagatagt tttaaatggc aaaaattaga attcatgaaa ttgcgaaaga attaggctat
     3901 gatagcaaag aaattatcga gaaagcaaat gaattgggat tgaatatcaa aaccgcatct
     3961 aatgctgtag aacccgaagt tgcagcagga atttatgagt atatacaaac taaaattata
     4021 cccgaggctt tcaagaaaaa tttaaaacaa gatcctgtaa aaaaagccaa agctgcaccc
     4081 aaagaagaaa aaaaagaaga aaaatcacct aaagaagtag aaacaaaagc tccagctaaa
     4141 gtcgtagaag aagtaaagcc tgagccaaaa actcctgaag agcctaaaga aaacattcaa
     4201 gagagtttag cgagtgcgac tctagctaaa agaagagggc ttgtgattgt caaaaagaaa
     4261 aaagatgaag aagaagctgc gaaaaaagaa gagccaaagg ctagcactcc ttcaaatgat
     4321 gagcgtctta gcttaaaaac catgttttca aatgcggatg aaaatttaaa gaaaaagaaa
     4381 aaagagaaaa agccttttgt agcgactaag aaagaaagtg ctgaaaaaat ggacttttta
     4441 gaaggccatg attttgctga tatttcttta gaagatgaag atgtggtggt tttacctgat
     4501 tttagtgtaa aagaacaaga aaaaccacaa aatactatga aaaaaccacc taactttttg
     4561 cgtcaagcag taggaaattc agcaaatctt gggcttgagg gtggaattca aagaagaagt
     4621 cgtaaaaaac cacctaaaaa agttgagaaa aaagaaaatg aagcggtttc gagcgtagaa
     4681 atttcaaaag aaattcgtgt ttatgaattt gcagataaga taggcaaaag cgtgagtgaa
     4741 gtgatttcaa aacttttcat gctgggtatg atgacaacta aaaatgattt tttagatgaa
     4801 gatgcgattg aaattttagc tgctgaattt ggtatagaga tcaatatcat caacgaagca
     4861 gatgagtttg attatgtaaa agactatgaa gaagaagttg atgagaaaga tttggtaagt
     4921 agagcaccgg tgattactat catggggcat gttgatcatg gtaaaacttc tttgcttgat
     4981 tatatcagaa aatctcgtgt cgctagtggt gaagcagggg ggatcactca acatgtgggc
     5041 gcttatatgg tggaaaaaaa tgggcgtaaa atcactttta tagatactcc aggtcacgaa
     5101 gcttttactg ctatgcgtgc aaggggtgca agtatcactg atattgtaat catcgttgta
     5161 gcagcagatg atggggtaaa accacaaact aaagaagcga tcaatcacgc taaagcagcg
     5221 ggtgtgccta ttattattgc tattaataaa atggataaag aagcagcaaa tcccgatatg
     5281 gtaaaaactc aacttgccga aatggaaatc atgccagtag aatggggcgg atcttatgaa
     5341 tttgtaggag tttctgctaa aacgggaatg ggtattgaag atttgcttga aatcgtgctt
     5401 ttacaagctg atattttaga gcttaaagcc aatccaaaaa gctttgcaaa agcaagtgtt
     5461 atagagagtt ctatccaaaa aggacgcggt gcggtagcta ctatcatcgt acaaaatgga
     5521 acacttaaag taggaagcac tatcgttgca ggtgaagctt atggaaaagt gcgcgcaatg
     5581 agcgatgatc aaggcaaggc tttaaaagag atcaaaccgg gtgaatgtgg tgttatcgta
     5641 gggcttagtg aagtggctga tgcgggtgaa attttaatcg cagtaaagag tgataaagaa
     5701 gcaagagagt atgctaacaa gcgccacgaa tacaaccgcc aaaaagaact tagcaaatcc
     5761 actaaagtta gcattgatga gcttggagct aagatcaaag aaggtaatct aaaagccttg
     5821 cctgttattt taaaagctga tgtacaagga tctttagaag ccttaaaagc aagcttagaa
     5881 aagcttagaa atgatgaaat taaagtcaat atcatacaca gtggagtagg ggggatcacg
     5941 caaagcgata tagagcttgc aagtgcaagt gaaaactcca tcgtactagg ctttaatata
     6001 cgcccaaccg gagagatcaa agagcgtgct aaagataaag gcgtggaaat aaaaacttat
     6061 aatgttattt ataatctact tgatgatgta aaagccttgc taggtggtat gatgagccct
     6121 atcatctctg aagaacaact tggacaagca gagattagac aagtgatcaa tgtaccaaaa
     6181 atcggacaaa ttgcaggttg tatggtaacc gaaggggtga ttaaccgtgg ggctaaaatt
     6241 cgccttatcc gtgatggagt tgtggtttat gagggaaatg taagctcact taaacgcttt
     6301 aaagatgatg ctaaagaagt ggcaaaaggc tatgaatgtg gcgtaggtat agaagggtgc
     6361 gatgatatga gagtgggtga ttatatagaa agctataaag aagtagagga acaagcaagt
     6421 ctatgaaccc aagtgagatt aaaaaactac gcactgaaag tatcttaaaa gagctgatcc
     6481 ctgaagcttt agcaaattta gatgatgaaa atttgaaaaa tttgtgtgta gtggatgtag
     6541 agtgtaaaaa aggcagatat gatgcttttg tgtatcttga taagatgttt tttaatgttc
     6601 atgagcaaga aaaaatttta tcttctttaa aaaaggcaag tagagctttg caaaattact
     6661 gcatgagtga gcagggttgg tataggtgtc caaattttca ctttaaattt gatgatagac
     6721 ttgagtatca aaaccatatg gacgcacttt ttgaaaaaat aaaaaaggac aaaaatgaat
     6781 cttgaagctt tgtgtaaaga agtgaattta gagctttatg atagcaaatt aactagtgaa
     6841 aatggcaaga aaatttaccg cgtttatgtg atgaagccct tagatgaaaa gggtgaaaga
     6901 aggggtgtaa atttggatga ttgtgcaagg cttagtgaaa ttttatcacc tattttcgat
     6961 gtggaaccac ctgtaagtgg ggagtatttt ttagaagtat cttcagcagg acttgagaga
     7021 aaacttagca agatagagca ttttgcaaaa agtatcaatg agcttgtaaa aatcacaaca
     7081 ggtgaaaaag aaaaaatcga agcaaaaatc atcagcgtag aggatgaaaa tatcacttta
     7141 gaaaatttag aaaatcaaga aaaaactact ttaaaattta gcgatattaa aaaagccaga
     7201 accttcatac aatggtaaaa atttagattt ttaattttta cctatctttt atataattaa
     7261 aattaaacac aaaaattcaa aaggcataca atgttagaag ataaatacga ttggaaaata
     7321 agtaaggcag atcaaaatgg taatgtgtat tactattttc caaaagatag cgatgaattt
     7381 aaagaagcag ttgtgaaaaa tggtggtatg agcgtgtatg tttatcaaga tgataaatta
     7441 atagatgaat ttcatacaaa aagtcaaggt tataggtgga aaactcctat ctttacttat
     7501 ataaaaaata tgaataaaga tagagaaaaa tttcgtagat attataaaaa ttgtaaattt
     7561 tttgcgattg tggattaatt ttatatagat taaataagtt gtttttatca atgaaatttg
     7621 ttaaaggata atcgaataag gaaagaattg tgaaaaatac tgttttcgtt tttgaagata
     7681 atatcatatt tgaaataaat atttttgaaa aaagtaataa ggaagatttt agatatttcc
     7741 tagatgagaa ttcaaattta accaaatcaa caaaaaatga ttattgtgga agcaaaacaa
     7801 aaaaattttt tcaaagatta tatgctgatg
//
LOCUS       DBBXRO010000075         7829 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.076, whole genome shotgun sequence.
ACCESSION   DBBXRO010000075 DBBXRO010000000
VERSION     DBBXRO010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7829
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.076"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            27..2573
                     /locus_tag="ACJFEZ_001242"
     CDS             27..2573
                     /locus_tag="ACJFEZ_001242"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HGG0917361.1"
                     /translation="MSFMQDYNKLVEERAALGIPPLPLNAEQTKELCELLKTQNDEKL
                     VSLLQNRVNPGVDDAALIKCEFLDGILKNKFQAPAIDKKLALKMLETMLGGYNVKVLI
                     DALKDESIASDAAEVLKNIIFVHDNFHTVAELSKSNNHAKAVLESWANADWFNKKEKL
                     PQVIQCVVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIDGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVSNLEMGDEFEIHPYEGKIVKNGSVVAEFKLSPNTILDEVRAGGRIPLI
                     IGRGLCAKAREFLGMENENIFTKPEQPEASSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     RTLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYEDK
                     ATLARRADKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTK
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSDKLSDAHKANIYKYLNFNEIDNFKLDN"
     gene            2632..3873
                     /locus_tag="ACJFEZ_001243"
     CDS             2632..3873
                     /locus_tag="ACJFEZ_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HGG0917362.1"
                     /translation="MRLLFILFCCFLGLKAENLITCDYIKNNKAQVFQDSPKQDYLDI
                     ASTCDFSLKNQAFTKRLYQLANEIRGGNAACSGIEYFPKLQEFDFLLLKISIDPIEYQ
                     KGLDAPENLEKKYTLLRSYFRYWAYQSIGNFRLYQEFWQEYNNAIEPLEQYFENNFKF
                     DKGSNIYYTTNALNEFLNWAVGETKIYKDISPLAKVLSNKKHSITYIQDFIYTNNLNR
                     DELTIGLQAALLNQRNKDILNLLIRLGARIDEGYENALFYALENYDNTKFLLELGLNV
                     NSANTFGKTPLFYAIEFKRKDIVSLLLEYGTDVNKKYINDNEKLALSANIGGNTPYFI
                     TFCALEHTSKNVLMHAAAYGDVEILKMLVAKGADINEIDDLGFNALDFALAANQKDNA
                     NYLQSLGLKPNENLIYGGSLE"
     gene            3870..4619
                     /locus_tag="ACJFEZ_001244"
     CDS             3870..4619
                     /locus_tag="ACJFEZ_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HGG0917363.1"
                     /translation="MKTAFITGASSGFGHACVEAFIQEGYKVIALARRKDRLDELKAK
                     YKDQIHILCLDVRKQEEIFKAVENLPNDFKEIDVLFNNAGLALGIDEFDKLSIEDIDT
                     MVDTNIKGLLYVAKAIIPILRKQKSAYIFNLGSVAARNPYFGGNVYCGTKAFVGQFSR
                     ALRNDLRGENIKVTNIAPGLCKTEFSEVRFKGDKAKADAVYEGTQYISAQDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIEQNQ"
     gene            4616..6346
                     /locus_tag="ACJFEZ_001245"
     CDS             4616..6346
                     /locus_tag="ACJFEZ_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HGG0917364.1"
                     /translation="MRFLVFFLPPLLAFANTHQATANANLFGVFTLIPPLVAITLAFI
                     TKDVILSLFAGVLSGTFLLSLASNIFQADSLSFIHFYNTAIDSFSKIISYILESTSDP
                     VNAGIILQILCIGGLVALITKMGGAKAVAIKFAKRAKSAVSAQVNTWFLGLLIFFDDY
                     ANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKNAYED
                     IGISNISAFGVFVETIPYRFYNIFMLFFVLMTALMGREFGPMLKAEIRARTTGQIAPL
                     SKSSTLDTAELEDQFLAPKEDIKIRALDATIPILTLIVLAILGFYFNGLSTLEGEELL
                     KANANPLSFETLRLAFGSANSSVVLFQAALFAAIVAIFIGVYRKIFNFKEAVETWIYG
                     WKTMIFTIVLLLFAWSLSSIVKELGTPEFISSLLADKLPEFILPATIFAFASLISFAI
                     GTSYGTMGILMPLAVPLAYKVAQINAMDMDAMHHYMVINISCVLTGAIFGNHCSPISD
                     NVILSSMSAKCDHMEHVRTQIPYALFICVISLFAGYIPVSLGLSVWLVLPLNLILIAF
                     LLRIIGKKVS"
     gene            6343..7431
                     /gene="trmA"
                     /locus_tag="ACJFEZ_001246"
     CDS             6343..7431
                     /gene="trmA"
                     /locus_tag="ACJFEZ_001246"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HGG0917365.1"
                     /translation="MSLQEFGNFLKLEEKASFIKEFFKDFYQGNFELFSSKDKHYRTR
                     AELSFYHDKDEIYYAMFENKKKIIIESLEFADEKITAFMPKLLKQIRNNTNLKEKLFG
                     VEFLATKNELSTTLLYHKNIELIYNDLNNLSLELDANLIARSKGKKLVFKKENLRQEL
                     DIQGRKIFYKFNNDCFIQPNTSINEKMITWVCENLKTQERKDLLELYCGYGNFTLALA
                     IFFNNVLATEISKSNINFALLNCKINNISNIHFTRLSSEELSQALKKEREFFRLKDID
                     LDNFNFSHILVDPPRAGLDKSVIDLIKNYENIIYISCNPISLKENLKELALTHKVEKF
                     ALFDQFVNTPHLECGVLLKSLHSKQSSI"
     gene            complement(7443..>7829)
                     /locus_tag="ACJFEZ_001247"
     CDS             complement(7443..>7829)
                     /locus_tag="ACJFEZ_001247"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HGG0917366.1"
                     /translation="LIIHLSCAIFFIGYLFVDIFILNTIKRKNPNFDKNLFSSVGVKI
                     MPFIVLLLFLSGGAMISFHLNPLNLIFLIKLILAFSILSLVVFSLFFHFVLKRKNPLT
                     RFIHPFVFMLCIFIVVLAKLMNYYFL"
BASE COUNT         2750 a         1173 c         1375 g         2531 t
ORIGIN      
        1 actaaaaaat atttaaggag taaaaaatgt cttttatgca agattacaat aagcttgttg
       61 aagaaagagc agctttgggt atcccacccc ttcctttaaa tgcagaacaa actaaagaac
      121 tttgtgaact tttaaaaacc caaaatgatg aaaaattggt atctttattg caaaatcgtg
      181 tcaatccagg cgttgacgat gcagccttga taaaatgtga atttctagat ggaattttaa
      241 aaaataaatt tcaagctcca gccatagata aaaaactcgc tttaaaaatg cttgaaacaa
      301 tgctaggtgg ttataatgta aaagttttaa tcgatgcatt aaaagatgaa agtatagcta
      361 gcgatgcagc agaagtactt aaaaatatca tctttgtaca tgataatttc cataccgtag
      421 cagaacttag caaaagcaat aatcatgcta aagctgtttt ggaaagttgg gcaaatgcag
      481 attggtttaa taaaaaagaa aaattacctc aagtgattca atgtgtagtt tttaaagtag
      541 caggagaaac caatacagat gatttaagcc ctgctggtga tgcttttaca agaagcgata
      601 tccctttaca tgctaatgct atgctaaaag taagacaaac aggttctcta gaaaaaatca
      661 aagaactcaa aaaaagtggt cgtgaagtcg tatatgtggg cgatgtcgta ggtacaggtt
      721 caagtagaaa atctgcgatt aactccatac aatggcattt aggaaaagaa attgatggtg
      781 tgccaaacaa acacagtggt ggtatagtaa tgggctcaac catagctccg attttcttta
      841 acacagctca agatagcggt gctttaccta ttatttgcga tgtgtccaat ctagaaatgg
      901 gagatgagtt tgaaattcac ccttatgaag gaaagattgt aaaaaatggt tctgttgttg
      961 cagagtttaa actcagccca aataccatct tagatgaagt tagagcagga ggaagaattc
     1021 cacttatcat aggtcgtgga ctttgtgcta aagctagaga attcttagga atggaaaatg
     1081 aaaatatctt tactaagcca gaacaacctg aagcttcaag cggtggatat actttagctc
     1141 aaaaaatgct agggcgtgcc tgtggagttg aaggtgtgcg tccaggtatg tatatagagc
     1201 ctcgcacact tactgtaggt tctcaagata ctacaggtcc tatgacaaga gatgagatta
     1261 aagagcttgc aagcttagga tttaatgcgg attttgtaat gcaaagtttt tgtcatactg
     1321 ctgcttatcc aaaggttagt gactcaaatt tgcacaaaac tttacctaat ttcatgacaa
     1381 gtcgtggtgg agtaagctta aaaccaggcg atggggtaat ccactcttgg cttaatcgtt
     1441 ttgttttacc tgatacagta ggaacaggtg gagattctca cactcgtttt cctataggaa
     1501 tttcatttcc tgcaggaagt ggacttgtag cttttgctgc agtaactggc tctatgcctt
     1561 tgaatgtacc tgaaagtgtt ttggtgcgtt ttagcggaga attgcaagct ggagttactt
     1621 taagagatct tgtaaatgct ataccttatt atgcaatcaa acaaggacaa cttactgttg
     1681 aaaagaaaaa taaaaagaac atttttgcag gaaaaatttt agaaatagaa ggcttgccaa
     1741 acttaaaagt agaacaagct tttgaactca gtgatgcaag tgctgaaaga tctgcagctg
     1801 cttgtagtgt agatttaagc atagaaagtg taagcgaata tatcaaatca aatatttcac
     1861 ttatagaagc aatgatagaa gcaggatatg aagataaagc cactcttgct agaagagcgg
     1921 ataaaatgag agaatggctt aaaaacccta ctcttttaag agcagataaa gatgcaaaat
     1981 atgcgtacat tatcgatatt aatcttaacg atatcaagga gccaattcta gcttgtccaa
     2041 atgaccctga tgatgtggca accttaagcg aaattttagc cgatgataag cgtccaaaaa
     2101 atatagatga agtttttgta ggttcttgta tgacaaacat aggacattat agagctttgg
     2161 gagaaatttt aaaagataaa ggcatactta aaaccagact ttgggtagtg cctccaacaa
     2221 aaatggataa agcacaactt accaaagaag gttattacag catctttggc gcagcaggcg
     2281 ctagaataga agttccaggt tgttcgctat gtatgggaaa tcaagcaaga gtaaatgatg
     2341 gtgctgttgt cttctcaacc tctacaagaa actttgacaa tcgtatgggt atgggtgcta
     2401 aagtatatct aggaagtgct gaacttgcag cagtttgtgc gattttaggt aaaatcccaa
     2461 gcaaagaaga atatttgcaa atcgtaagcg ataaattaag cgatgcgcac aaagcaaata
     2521 tttataaata tcttaatttt aatgaaattg ataattttaa actagataat taatccaaat
     2581 ttaaagcaga tttgggttaa aattatagat taaaattttc aaaggataaa attgagatta
     2641 ttatttattt tattttgttg ttttttaggt ttaaaggccg aaaatttaat tacttgtgat
     2701 tatataaaaa ataacaaagc ccaagttttt caagatagtc caaagcaaga ctatcttgat
     2761 attgcttcta cttgtgattt ttctttaaaa aatcaagctt ttaccaaaag actttatcaa
     2821 ctcgccaatg aaattcgcgg tggaaatgct gcttgtagtg gtattgaata ttttccaaaa
     2881 ctacaagaat ttgacttttt gcttttaaaa atttctattg atcctataga atatcaaaaa
     2941 ggtctagatg ctcctgaaaa tttagaaaaa aaatacactc ttttaagatc ttattttaga
     3001 tattgggctt atcaaagtat aggaaatttt agactttatc aagaattttg gcaagaatac
     3061 aataatgcca tagaaccctt agaacaatat tttgaaaata atttcaaatt cgacaagggt
     3121 agcaatattt actataccac caatgcttta aatgaatttt taaattgggc tgtaggagaa
     3181 actaaaattt acaaagatat aagtccttta gcaaaagttt tatccaataa aaaacattca
     3241 ataacttata tccaagattt tatttatacc aataatctca accgagatga acttaccata
     3301 gggcttcaag cagccttgtt aaaccaacgc aacaaagata ttttaaatct tttgatccgt
     3361 ttgggtgcta gaatcgatga gggttatgaa aatgctttgt tttatgcttt agaaaactac
     3421 gataatacca aatttttatt agaactaggt ttaaatgtca atagtgccaa tacttttggc
     3481 aagacacctt tattttacgc tatagaattt aagcgcaaag atattgtttc attgctttta
     3541 gaatatggta ctgatgttaa taaaaaatac attaacgata atgaaaaatt agccctaagc
     3601 gcaaatatag gcggaaacac tccttatttt atcacctttt gtgctttgga gcacacttct
     3661 aaaaatgttc ttatgcatgc ggcagcttat ggagatgtag aaattttaaa aatgcttgtt
     3721 gcaaaaggtg ctgatattaa cgaaatagat gatttaggtt ttaatgcttt agattttgcc
     3781 ctagcagcca atcaaaaaga taatgctaat tatctgcaaa gtctgggttt aaaacccaat
     3841 gaaaatttaa tttacggagg gagtttagaa tgaaaactgc atttatcaca ggagcaagct
     3901 ctggttttgg gcatgcttgc gttgaagctt ttatacaaga aggatacaaa gtcattgctc
     3961 tagcaagaag aaaggatcgt ttagatgaat taaaagccaa atacaaagat caaattcaca
     4021 tactttgtct tgatgtaaga aaacaagaag agatctttaa agctgttgaa aacctaccta
     4081 acgattttaa agaaatagat gtacttttta ataatgctgg tttagctctt ggcatagatg
     4141 aatttgataa attaagtata gaagatatag acactatggt tgatactaat atcaaaggtc
     4201 ttttatatgt agcaaaagcg atcattccta tacttcgcaa acaaaaaagt gcttatatct
     4261 tcaatcttgg ctctgtagca gctagaaatc cttattttgg tggcaatgta tattgtggaa
     4321 ctaaagcatt tgtaggacaa ttttctaggg ccttaagaaa tgatttaaga ggagaaaata
     4381 tcaaggttac aaacatagct ccagggcttt gcaaaactga atttagtgaa gttcgcttta
     4441 aaggagataa ggcaaaagcc gatgcagtct atgaagggac gcaatacata agtgcacaag
     4501 atatagcaaa agtagtgatg tcaatcatca atctgccaag ccatatcaat gtcaatgaaa
     4561 tagaattaat gcctgttact caaacttgga atggctttta tatagagcaa aatcaatgag
     4621 atttttagta tttttcctac cgcctttact tgcatttgcc aatacacatc aagctacggc
     4681 aaatgcaaat ttatttggag ttttcactct tatacctcct ttggttgcta tcactctagc
     4741 ttttattaca aaagatgtga tcttgtctct ttttgcagga gttttaagcg gaaccttctt
     4801 gcttagtctt gcttctaata tttttcaagc cgacagctta agttttattc atttttataa
     4861 tactgcgata gattcttttt caaaaattat ttcttatatt ttagaatcaa cttcagatcc
     4921 tgtaaatgct ggtatcatct tgcaaatttt atgcataggt gggcttgttg cacttatcac
     4981 caaaatgggt ggcgcaaaag ctgtggctat aaaatttgca aaaagagcaa aatcagcagt
     5041 atcggcacaa gtaaatactt ggtttttagg tttgttaatc ttttttgatg attacgctaa
     5101 tttactcatc gtaggaccta tcatgcgtcc tttagcagat aaatttaaaa tttctcgtga
     5161 aaaatttgcc tttattatcg attctacagc tgcacccgtt gcagggattg ctgtgatttc
     5221 tacctggata ggtttagaag tatctttaat caaaaatgcc tatgaagata taggcattag
     5281 caatatcagc gcttttgggg tttttgttga aaccataccc tatagatttt acaatatttt
     5341 tatgcttttc tttgttttaa tgactgcgct tatggggcgt gaatttggtc ctatgttaaa
     5401 agctgaaatt cgtgcaagaa ctacaggaca aatcgctcct ttatcaaaat caagcaccct
     5461 agataccgca gaacttgaag atcagttttt agctccaaaa gaagatatta aaatccgtgc
     5521 attagatgct acgattccta ttttaacttt gattgtttta gctatacttg gattttattt
     5581 taatggacta agtactttag aaggtgaaga attactaaaa gcaaatgcaa atcctttatc
     5641 ttttgaaacc cttaggctag cttttggaag tgcaaattct tctgtggtgc tttttcaagc
     5701 cgccttattt gccgctattg tagcaatttt tattggagtg tatcgcaaga tttttaattt
     5761 taaagaagcg gttgaaactt ggatatatgg ttggaaaact atgattttta ccatagtttt
     5821 acttttgttt gcatggtcgc tttcaagcat agtaaaagag cttggaactc cagaatttat
     5881 ctcaagcttg ctcgctgata aattgcctga atttatccta cctgctacca tttttgcttt
     5941 tgcttcgctt atttcttttg cgataggaac aagctatggg actatgggta ttttaatgcc
     6001 tttggcggtg cctttagctt ataaggttgc acaaataaat gcaatggata tggatgcaat
     6061 gcatcattat atggtgatta atataagttg tgtcttaact ggagccattt ttggaaacca
     6121 ttgttcgcct atttcagaca atgtaatcct ttcatcaatg agtgcaaaat gtgatcatat
     6181 ggagcatgtt cgcactcaaa ttccttatgc cttatttatt tgtgtaattt ctttatttgc
     6241 tggttatata cctgtttctt tagggcttag tgtatggttg gttcttcctt taaatttaat
     6301 tcttattgca tttttgctta gaattatcgg aaagaaagtt tcatgagtct tcaagaattt
     6361 ggaaattttt taaaattaga agaaaaagct tcttttataa aagaattttt caaagatttt
     6421 tatcaaggaa atttcgagct tttttcttcc aaagataaac attaccgcac aagagcagag
     6481 ctttcatttt atcatgataa agacgaaatt tattatgcga tgtttgaaaa taaaaagaaa
     6541 atcatcatag aaagcttaga atttgcagat gaaaaaatca ccgcttttat gcccaaactc
     6601 ttaaaacaaa ttcgcaacaa tacaaattta aaagaaaaac tttttggtgt agagttttta
     6661 gcgactaaaa acgagttaag caccactcta ctttatcata aaaatataga gcttatttac
     6721 aatgacttaa ataatttaag cttagaactt gatgcaaatt taatcgcaag aagcaaaggt
     6781 aaaaaacttg tttttaaaaa agaaaattta agacaagagc ttgatataca aggtagaaaa
     6841 atattttata aatttaacaa tgattgtttc atacagccta atacctccat caatgaaaaa
     6901 atgataactt gggtgtgtga aaatttaaaa acccaagaaa gaaaagactt gcttgagctt
     6961 tattgtggat atggaaattt tactctagct ttagcaattt tttttaacaa tgtactagcc
     7021 actgaaattt caaaaagcaa tattaatttt gccttgctta attgcaagat caacaatatc
     7081 tcaaatatcc attttacaag actttcaagc gaggaattat cccaagcttt aaaaaaagaa
     7141 agggaatttt ttcgcttaaa agatattgat ttagataatt ttaatttttc tcatatttta
     7201 gtcgatccac cgcgtgcagg acttgataaa agtgtaattg atttaattaa aaattatgaa
     7261 aacatcattt atatttcttg taatcctatc agcttgaaag aaaatttaaa agaacttgct
     7321 cttacgcata aagttgaaaa atttgcgctt tttgatcagt ttgttaatac tccgcattta
     7381 gaatgtggag tacttttaaa atctttacat tctaagcaat cttcaatttg aaagttgata
     7441 aattataaaa aataataatt catcaactta gctaaaacca caataaaaat acaaagcata
     7501 aaaacaaaag gatgtataaa acgcgttaaa ggattttttc tctttagcac aaaatgaaaa
     7561 aataaagaaa acaccactaa agacaaaata ctaaaggcta aaatcaattt tatcaaaaaa
     7621 attaaattta aaggattaag atgaaagctt atcatcgcac caccacttaa aaatagcaat
     7681 aatacgataa aaggcataat cttaacaccc acggaagaaa aaagattttt atcaaaattt
     7741 ggattttttc tcttaattgt attgagtata aaaatatcga caaataaata acctataaaa
     7801 aagattgcac agcttagatg aatgattaa
//
LOCUS       DBBXRO010000076         7823 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.077, whole genome shotgun sequence.
ACCESSION   DBBXRO010000076 DBBXRO010000000
VERSION     DBBXRO010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7823
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.077"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            138..992
                     /locus_tag="ACJFEZ_001248"
     CDS             138..992
                     /locus_tag="ACJFEZ_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917367.1"
                     /translation="MKKFIFILAVLSSCLFASDELNIDSLFKKQIGLRSITSLSLLST
                     GNPHSYYIYPNIGVNGDLNVWNDTKQLYLNQTFIYTLTPNFDLLISGGGNYARQEYNN
                     IISGAFTSKNTLNFDSLWIGFIYTGESIADFVPQIKFQTAIIQREKTVLQTKNFYFQS
                     QNLEASLRGYSDPVVYSIYTGFGYNAQRKFKIAKIDYGNSIYFGGNLSIILSPKITLD
                     LGAEQRFQTEQKINGVKNSEIRSIPTISGGSTYSINQDTAVSVSASLGGSSAAPDAIF
                     GINLWKKF"
     gene            977..1570
                     /locus_tag="ACJFEZ_001249"
     CDS             977..1570
                     /locus_tag="ACJFEZ_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine peptidase family C39 domain-containing
                     protein"
                     /protein_id="HGG0917368.1"
                     /translation="MEKILKIALMVALLPLFLKAEFVVKSYQEIKNEKVVRQNYEESC
                     GAASLATLINTLDDNNLTELDLLKTMSGQKLYTDMVSFADLNDAVKKLGYESKSYKVD
                     RKILENIISVPILVKIEDDPRFPHFVVIINHKGNYLQILDPSYGEYISSKREFYSVWD
                     RYNKGGFALIVNPKKQLKDYKLNLPKPLNFEIEHFGF"
     gene            complement(1611..2972)
                     /locus_tag="ACJFEZ_001250"
     CDS             complement(1611..2972)
                     /locus_tag="ACJFEZ_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HGG0917369.1"
                     /translation="MSIFSINDNSNYNSILSQSKANKESKENSKISFANAFLKQNASK
                     LSDIESKNSQTLARSEVLSNNNALNNSSNSTNISNSSNTNLSINNATKTSSPNYDISS
                     EFKNSIYTLKYKQADISTSTNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEI
                     KKAAENEPYIADMKQYFGVSEYYTNIDMAETIKQYYNLFSNALGQSFPNDKTSFSEAD
                     INSMPKGYAINGIKSMDFNDPSNRMNITHLRDFSNSLISNVYKTPEQAKEADEIWLDS
                     GCMIKGLSSETLGLSLEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKETLFMSFLKSQ
                     GGQPVESLKTTLNPKVEAYNRAMAKESFSGPAIHLDSIMTGKSDFKSFFRYWAERGIE
                     EGDLYMYENNIPKESAMGNWALDAEIKQAIANGWKAKPSTINSYADSIMDRLNNLIGQ
                     TRV"
     gene            complement(3061..3780)
                     /gene="kdsB"
                     /locus_tag="ACJFEZ_001251"
     CDS             complement(3061..3780)
                     /gene="kdsB"
                     /locus_tag="ACJFEZ_001251"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HGG0917370.1"
                     /translation="MIIIPTRLASTRFPEKILCDIGGVPMFIATAKQVSSVDEVCIAV
                     DDEKVLEIAKQYGFKAVLTSKNHESGTDRINEACKKLGLKDDEIIINVQADEPFIECE
                     NLAKFKEFANSCLKQEAFMASCYKDISKDDASDPNLVKVVCDKNDFALYFSRAKIPYE
                     RADYEESFKGHLGIYAYSVKALCEFCTLENSALEKAEKLEQLRAIENGKKIKMLQINT
                     SSMGIDTKEDYERALRIYLGK"
     gene            complement(3777..5189)
                     /gene="thrC"
                     /locus_tag="ACJFEZ_001252"
     CDS             complement(3777..5189)
                     /gene="thrC"
                     /locus_tag="ACJFEZ_001252"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HGG0917371.1"
                     /translation="MLLVESRNINNKVDFKNALVNPNAPQGGLYSPLSLPQFDGEKYA
                     NLSYKEFALKLIESFEFGHEALFDKALKSYEKFDDKNSPIALKKIKDKTYINELWHGP
                     TRAFKDMALQPFGVLLNEFSQNEKILIICATSGDTGPATLKSFENLENIKVLCMYPKG
                     GTSAIQELQMRALDKGNLKVFAIRGDFDDAQRTLKKLLAKETFKDELSKVGYGLCAAN
                     SVNFGRILFQIIYHYYASLKLYHEFKEEIEILIPSGNFGNALGAYYAKLMGAKISKIK
                     IVSNANNILTDFFTKGEYDLRDRSLKKTISPAMDILISSNIERLLFSKFSDLRTNELM
                     NLLKTEKYFKLEKEELQSLQEDFEADFCTDEECMKFIKESKILIDPHTATCFKMLDTS
                     KPSIITSTAEWTKFTPSMVKALFGRECKDEKADFELLAKEFKVDIKKDLLELFDLKNA
                     DEKVYEIGDIEGEILEWIKK"
     gene            complement(5176..6108)
                     /locus_tag="ACJFEZ_001253"
     CDS             complement(5176..6108)
                     /locus_tag="ACJFEZ_001253"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HGG0917372.1"
                     /translation="MNEEKKYQLWLDNYFFKPSFFQKCLAFIFLPLSLLYGLCAILNT
                     CFRQKIDFKKPIISVGNLSFGGNGKTPICKAIAREFEGVFIVLRGYRRKSKGLLVVKN
                     ENAILAQVSQSGDEAMEYAFEECVKGVIVSEDRVAGIQKAFELGAKIVLLDDAFSKFH
                     IQKFDILLESKIKPYFNFTLPSGAYRLPKFYEKKADFIACEGRDFIRYSYVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELQALLDKHHCDTLMLTFKDYVKVK
                     DFGFKCQIIELNIELKENFKEKLYQYIRSFNVAS"
     gene            complement(6108..6854)
                     /locus_tag="ACJFEZ_001254"
     CDS             complement(6108..6854)
                     /locus_tag="ACJFEZ_001254"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HGG0917373.1"
                     /translation="MDCEKISQTLCEFIQHKVKDSGLNGVVLGLSGGIDSALVATLCK
                     KALGENVFALLMPTKFSNQENLNDALKLCQELNLKYKIIEIQDILEAFLKQSENTDEL
                     SRGNFAARIRMSLLYDYSALKKALVVGTSNKSELLLGYGTIYGDLAYAFNPIGELYKS
                     EIYGLARYLNLNEKFIQKAPSADLWIGQSDEKDLGFSYELIDKGLKALENQDMKALEN
                     LDKKLLDMLQSRIKNNAFKRNMPEIASLNK"
     gene            6928..7524
                     /locus_tag="ACJFEZ_001255"
     CDS             6928..7524
                     /locus_tag="ACJFEZ_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HGG0917374.1"
                     /translation="MQILKQACGPYETNCYILNTSKGDFIIDPGVNALSFIKQYAKKP
                     LAILNTHGHYDHVWDNARVKKEFDIPIYIHKNDEFMLQDPFGKGFEPSKADVLIENED
                     ELEISNTRFKFHFLPGHTPGCAMIELIGENLMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFRLLPGHGQETSLRAEQVHLPSWLRYF"
     gene            7536..>7823
                     /locus_tag="ACJFEZ_001256"
     CDS             7536..>7823
                     /locus_tag="ACJFEZ_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917375.1"
                     /translation="MNLDFVLLCFFVFLDAFALLGLLLGNKKKNQFNDKKFYKICPCK
                     QMAENGSLSTICIYSAVGGFFYSVLSIGYIGFGDLFLNLIFLFTLLSAYMGW"
BASE COUNT         2609 a         1314 c         1060 g         2840 t
ORIGIN      
        1 tggacaagtg ttaggaataa tgagattaaa agagatggat aatttataaa agaaaggaat
       61 aaaatataaa gaatatacta aaaactttgg aacactcctt gcttaatttt tcaaagcaat
      121 atttcaaaag gattataatg aaaaaattta tttttatctt ggcagtttta agtagttgtc
      181 tttttgctag tgatgagtta aatatcgata gtttgtttaa aaagcaaata ggcttaagaa
      241 gcattacaag tttatccttg cttagcacag gaaatcctca ctcttattac atttatccaa
      301 atattggagt aaatggagat ttaaatgttt ggaatgatac aaagcaactt tatttgaatc
      361 aaacttttat ttatacgctt acacctaatt tcgatttact tatttcaggc ggtggaaatt
      421 atgcaagaca agagtataac aatattattt caggtgcttt tacaagcaaa aatactttaa
      481 attttgattc tttatggata ggctttattt atacaggaga aagcattgct gactttgttc
      541 cgcagattaa atttcaaaca gcgatcattc aaagagaaaa aacagttttg caaactaaaa
      601 acttttattt tcaatcccaa aacttagagg caagtttaag aggatatagc gatccagtgg
      661 tatatagtat ttatacagga tttggttata acgcccaaag aaaatttaaa atcgcaaaaa
      721 tagattatgg caatagtatt tactttggtg gaaatttatc tataatttta agccctaaaa
      781 ttactttgga tttaggagca gaacaaagat ttcaaaccga acaaaaaatc aatggtgtaa
      841 aaaattcaga aatcagatca attcctacaa ttagtggcgg ttctacttat agcataaatc
      901 aagatactgc tgtttcagtc agtgcaagtc taggtggaag ctctgctgca cctgatgcaa
      961 tttttggtat caatctatgg aaaaaattct aaaaatagca ttaatggttg ctcttttgcc
     1021 tttgttttta aaggcagaat ttgtagttaa gtcttaccaa gaaatcaaaa atgaaaaagt
     1081 tgtaaggcaa aattatgaag aatcttgtgg tgctgcttct ttggctacgc ttattaatac
     1141 acttgatgat aataatttaa cagaattaga tttattaaaa accatgagtg gacaaaaact
     1201 ttatacagat atggtaagct ttgcagattt aaatgatgca gtaaaaaagc ttggctatga
     1261 aagcaagtct tataaagtcg atagaaagat tttagagaat attatatctg ttcctatttt
     1321 agttaaaatt gaagatgatc cacgctttcc acattttgtg gtgattataa atcataaagg
     1381 taattattta caaatacttg atccaagtta tggagaatat atcagttcta aaagagaatt
     1441 ttatagtgtt tgggatagat acaataaagg tggatttgct ttaattgtta atcctaaaaa
     1501 acaactcaaa gattacaaac tcaatttacc caaaccttta aatttcgaaa tagaacattt
     1561 tggattttaa tatcgcaatt aagcgatatt aatttctttt tatttacttc ctaaacccta
     1621 gtttgtccta taagattatt taatctatcc attatagaat cagcgtagga attaatggtg
     1681 ctaggttttg ctttccagcc attggcaatg gcttgtttaa tttcagcatc taaagcccaa
     1741 ttacccatag cagattcttt aggaatgtta ttttcataca tatataaatc accttcttct
     1801 atgccacgct ctgcccagta tctaaaaaag cttttaaagt cacttttacc tgtcataata
     1861 ctatctaagt gtatggctgg accactaaaa ctctctttag ccatagctct attataagct
     1921 tctacttttg gattaagtgt ggtttttaga ctctcaacag gttgtccacc ttgagatttt
     1981 aaaaaactca taaacaaagt ttctttagaa tagcttccat cttcattttg tggataaact
     2041 gacatatcag gattaaactg ccaatcttca cctttagaaa catttttgat ttcttctaag
     2101 gataaaccta aagtctcaga tgataatcct ttgatcatac atcctgaatc aagccaaatt
     2161 tcatcagctt cttttgcttg ttcaggggtt ttataaacat ttgaaattaa agaatttgaa
     2221 aaatctctta ggtgagtgat attcattcta ttgcttggat cattaaaatc catcgatttt
     2281 attccattta tagcataccc cttaggcata gaatttatat ctgcttcact aaaacttgtt
     2341 ttatcatttg gaaaactttg acctaaagca ttggaaaaaa gattataata ttgttttatg
     2401 gtttcagcca tatctatatt agtataatac tcacttacac caaaatattg tttcatatct
     2461 gcaatataag gttcattttc agcagctttt ttaatctcat ccaaagtaga tttatgtatc
     2521 ttaaaatctt caggaagtcc cgcagctttg ttaaaatcac ttcccatata accatcttta
     2581 tctacactat aaccataggc tgtattggta gaagtgctta tatctgcttg tttatatttt
     2641 agagtataaa tagagttttt aaattcacta gatatatcat aattaggaga acttgtttta
     2701 gtagcattat taatactaag gttagtatta ctactatttg atatattagt agaatttgaa
     2761 ctattgttta atgcattgtt attgcttaat acttcacttc ttgctagagt ttgtgaattt
     2821 ttactttcta tatcacttaa cttgctggca ttttgtttta aaaaagcatt agcaaaactt
     2881 attttagaat tttctttact ttctttatta gctttacttt gtgaaagtat agaattatag
     2941 tttgagttat cattgatact aaagatactc atattaattc cttaatttag atttttctgc
     3001 cttcaatcta aatatatttt gtaaatcata caagcaaaat ttgttccaat ttggaataaa
     3061 ttattttcct aaataaattc gcaaagccct ttcatagtct tctttggtat caatccccat
     3121 gctactagtg ttaatttgaa gcatttttat ctttttgcca ttttcaatag ctcttaattg
     3181 ttccaatttt tcagcttttt caagggcgga attttccaaa gtgcaaaatt cacacaaagc
     3241 tttaacacta taagcataaa ttcctaaatg tcctttaaaa ctttcctcat agtctgccct
     3301 ttcgtaagga attttcgctc ttgaaaaata taaagcaaaa tcatttttat cgcaaaccac
     3361 tttcaccaaa ttcggatcgc ttgcatcatc tttactgata tctttataac aacttgccat
     3421 aaaagcttct tgtttcaaac aagaattagc aaattcttta aatttggcta aattctcgca
     3481 ttctataaag ggttcatctg cttgtacatt gatgatgatt tcatcatctt ttagaccaag
     3541 ctttttacaa gcttcattga tcctatctgt gccactttca tgatttttgc ttgttaaaac
     3601 cgctttaaaa ccatattgtt tggcaatttc taacactttt tcatcatcta ctgctatgca
     3661 aacctcatcc acactagaaa cctgtttagc agtagcgata aacataggca caccacctat
     3721 atcacaaaga attttttcag gaaaacgcgt tgaagctagt cttgtgggta tgataatcat
     3781 tttttaatcc attctaaaat ttcaccttcg atatctccta tctcgtagac tttttcatca
     3841 gcatttttaa gatcaaaaag ctctaaaaga tcttttttga tatctacttt aaattcttta
     3901 gccaaaagct caaaatctgc tttttcatcc ttgcattctc taccaaaaag tgcttttacc
     3961 atactcggag taaatttagt ccattctgct gttgaagtaa taatacttgg ctttgaagta
     4021 tcaagcattt taaagcaagt tgctgtatga ggatcaatta aaattttact ctctttaata
     4081 aatttcatac attcttcatc agtacaaaaa tcagcttcaa aatcctcttg taagctttgc
     4141 aattcttctt tttctaattt gaaatatttc tcagttttta acaaattcat caattcatta
     4201 gtcctaagat ctgaaaattt agaaaataac aatctttcaa tatttgaaga aataagtata
     4261 tccatagctg gagaaatcgt cttttttaaa cttctatccc taagatcata ttctcctttg
     4321 gtgaaaaaat cagtaaggat attgttagca ttagaaacaa tttttatctt agaaatttta
     4381 gctcccatta atttagcata atacgctcct aaagcattgc caaaattccc acttggtata
     4441 agaatttcaa tctcttcttt aaattcatga taaagtttta agcttgcata gtagtgatag
     4501 atgatttgaa ataaaattct accaaaattt acagaattag cagcgcaaag tccgtatcct
     4561 actttgctta actcgtcctt aaaagtttct tttgcaagca atttttttaa agtgcgttgt
     4621 gcatcatcaa aatctcccct gatagcaaaa acctttaaat ttcccttatc taaagctctc
     4681 atttgaagct cttgtatagc acttgttcca ccttttggat acatgcaaag cactttaata
     4741 ttttctaaat tttcaaagct tttaagcgtt gcaggtcctg tatctccact cgtagcacaa
     4801 atgattaaaa ttttttcatt ttgagaaaat tcatttaaaa gcactccaaa aggttgcaaa
     4861 gccatatctt taaaggctct tgtaggccca tgccaaagct cgttgatgta tgttttatct
     4921 tttatctttt ttaaagcgat aggtgagttt ttatcatcaa atttttcata actttttaaa
     4981 gctttatcaa acaaagcctc atgtccaaat tcaaaactct ctatcaactt taaagcaaat
     5041 tctttataag ataagttcgc gtatttttcc ccatcaaatt gaggtaaact taaaggcgaa
     5101 taaagcccac cttgtggagc attgggatta actaatgcat ttttaaaatc tactttattg
     5161 tttatatttc tactttcaac tagcaacatt aaaactcctt atatattgat ataatttttc
     5221 tttgaaattt tcttttaatt ctatattcaa ttctataatc tgacacttaa atccaaaatc
     5281 cttcacctta acataatcct taaaagttag cattaaagta tcacaatgat gcttatccaa
     5341 caaagcttgc aattcttctt ttttaaattc ataatgatct ttaaaaaaat aacaagccct
     5401 agcctttata aaatgctcat aaagcctaaa aggctttgca atcgctgtaa ctaaaactgc
     5461 cttaggattt tcttttacat aagaatagcg tataaaatcc ctaccctcac aagctataaa
     5521 atcagctttt ttttcataaa atttaggcaa acgataagca ccgcttggta aggtaaaatt
     5581 aaaataaggc ttgatcttgc tttcaagcaa aatatcaaat ttttggatat gaaatttaga
     5641 aaaagcatca tctaaaagca ctattttagc ccctaactca aaagcttttt gaattcctgc
     5701 taccctatct tcacttacga tcacaccctt tacacactct tcaaatgcgt actccatcgc
     5761 ctcatcgcca ctttgtgaaa cttgagctaa aattgcattt tcatttttaa ccacaagcaa
     5821 acccttgctt ttacgcctat agcctctaag cactataaaa acgccttcaa attcccttgc
     5881 tatagccttg caaataggcg tttttccatt tcctccaaag cttaaatttc ctacgcttat
     5941 aatgggtttt ttaaaatcaa tcttttggcg aaaacaagta tttaaaatcg cacataaacc
     6001 ataaagcaaa ctcaaaggta aaaaaataaa agctaaacat ttttgaaaaa agctgggctt
     6061 aaaaaaataa ttatcaagcc aaagttgata ctttttttct tcattcatta tttattcaaa
     6121 ctcgcaattt caggcatatt tcttttaaaa gcattgtttt ttattcttga ttgaagcata
     6181 tctaataatt ttttatctaa attttctaat gctttcatat cttgattttc aagcgctttt
     6241 aatcctttgt ctataagctc ataagaaaaa cccaagtctt tctcatcact ttgtcctatc
     6301 caaagatccg cacttggagc tttttgaatg aatttttcat ttaaatttaa atatcttgct
     6361 aatccataaa tttcactttt ataaagctct cctataggat taaaagcgta agctaaatct
     6421 ccataaatcg tcccataacc caaaagtaat tcgcttttat ttgaagtacc aaccactaaa
     6481 gcttttttta aagcagaata atcataaagc aagctcattc taatacgtgc agcaaaattt
     6541 cccctgctta actcatctgt attttcactt tgttttaaga aagcctctaa aatgtcttga
     6601 atttctatga ttttgtattt taaattcaat tcttgacaaa gttttaaagc atcgtttaaa
     6661 ttttcttgat tagaaaattt tgtaggcatt aaaagcgcaa aaacattttc acccaaagcc
     6721 ttcttacaaa gcgtcgccac caaagcagaa tcaatccccc cactaagtcc taaaacaacg
     6781 ccatttaagc ccgagtcctt aaccttgtgc tgaatgaatt cacataaagt ctgagaaatt
     6841 ttttcacaat ccataaactt acctttaaac aatcaatgta taattataat tcattttagg
     6901 ttcaaatttc aataaaaaag gctaaaaatg caaattctaa aacaagcttg cggtccttat
     6961 gagacaaatt gctatatttt aaacacctct aaaggggatt ttataataga tcctggcgtt
     7021 aatgctctaa gttttataaa gcaatacgct aaaaaacctt tagcgatttt aaacactcac
     7081 gggcattatg atcatgtatg ggataatgct agagtaaaaa aagaatttga cattcctatt
     7141 tatatccata aaaatgatga atttatgcta caagatcctt ttggaaaagg ttttgagcca
     7201 agtaaagctg atgttttaat cgaaaatgaa gatgagcttg aaatttctaa cactcggttt
     7261 aaattccatt ttctccctgg gcatacgcca ggctgtgcca tgatagaact tataggtgaa
     7321 aatttgatgt ttagcggaga ttttttattt tatagaagta taggaagatg ggattttcct
     7381 tattcagatg ctaatttaat gaaacaaagc ttggaaaaag tgatgactta taaagaagac
     7441 tttagacttt tacctggaca tgggcaagaa acaagcctta gagctgaaca agtgcattta
     7501 ccttcttggc ttagatattt ttaaaggtga tttttgtgaa tttagatttt gtgttacttt
     7561 gcttctttgt ttttttagat gcttttgcgc ttttgggctt gctcttagga aataagaaaa
     7621 aaaatcaatt caatgataaa aaattttata aaatttgtcc ttgcaaacaa atggcagaaa
     7681 atggctcttt aagtacgatt tgtatttatt ctgctgtggg tggatttttt tatagtgtat
     7741 tgtctatagg ttatattgga tttggcgatt tatttttaaa tttgattttc ttatttacgc
     7801 ttttgagtgc ttatatgggc tgg
//
LOCUS       DBBXRO010000077         7752 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.078, whole genome shotgun sequence.
ACCESSION   DBBXRO010000077 DBBXRO010000000
VERSION     DBBXRO010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7752
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.078"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            90..1412
                     /locus_tag="ACJFEZ_001257"
     CDS             90..1412
                     /locus_tag="ACJFEZ_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transport family protein"
                     /protein_id="HGG0917376.1"
                     /translation="MNTPKWTRYDTRWVLSLFGTAVGAGILFLPIKAGVGGFWPVVVM
                     TLIIFPMVYLSHRALSRFVCQANGNDKDITHAAEEYFGRKVSIFISVLYFFAIFPICL
                     AYCVGITNTFESFIYHQFLPLLNSEGVFADIIRAMYEVSTDDKEKVVASLFPFYRLLL
                     AFILVSIFMLIMLFSEELITKVCEWLVYPLCAILFLFSLYLIPQWSFESFSAIPGTKE
                     FITIVWLTLPVLVFSFNHSPAISTFSLSVKREYPENSVQKANQILFRTSVMLLAFVMF
                     FVVSCVLSLTPAELAEARAQNIPVLSYFANKLDNPFISYGGPLIAFLAISSSFFGHYF
                     GAREGAYGIVRKCCKLAGNENPDLKKIAVYSTLVMYIVMLITAYINPSILGFIESLGG
                     PIIAAILFLMPIIAIYTVSKMKKFQNKALDAFVFITGVLTIITVIYTF"
     gene            1423..2787
                     /locus_tag="ACJFEZ_001258"
     CDS             1423..2787
                     /locus_tag="ACJFEZ_001258"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HGG0917377.1"
                     /translation="MSNLNIFKIGVGPSSSHTLGPMLAGNLFCKKIAKKLEKIERIQI
                     ILYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAQLEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLVAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVGGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSIPIVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2847..3368)
                     /locus_tag="ACJFEZ_001259"
     CDS             complement(2847..3368)
                     /locus_tag="ACJFEZ_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917378.1"
                     /translation="MAFMSFSGFFYARNDLRLFKIEKKSEIKSFFYKDYTLASFKDEL
                     NLNNEIFFYQSLKENLFKENDEILISNLGKKIILFRNFTQNSDNFAEAKLKQVLLLIF
                     LFLASVFFASLAAINEFGAVDLVFLMICLLLLVMGIINLGLLFKQIRILKSFSKEEMK
                     EFLTQRMKKYAKK"
     gene            complement(3349..4329)
                     /gene="ribD"
                     /locus_tag="ACJFEZ_001260"
     CDS             complement(3349..4329)
                     /gene="ribD"
                     /locus_tag="ACJFEZ_001260"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HGG0917379.1"
                     /translation="MKNFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHE
                     KAGCAHAELNAIAHAFTNLNPEISLPQEANAMHEFICKNHRGIFKDSIAFVTLEPCSH
                     QGKTPPCAKLFSELGFKKIFISVKDENEIASKGAEFLKKQGVEIEFGVLKDEGKKLLK
                     PFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRSVIDLLVLGGETIRKDR
                     PILDARLCKGKAPNLCILSHQNLENFDKSIPLFSVPHRQIYTQIPNKAKFLMYEGGEN
                     FLKKFKDEMDMFLIFQSSSLNDEKNVTMPLNFKPLYRNFLGSDTYGIYEL"
     gene            complement(4331..6025)
                     /locus_tag="ACJFEZ_001261"
     CDS             complement(4331..6025)
                     /locus_tag="ACJFEZ_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917380.1"
                     /translation="MNNNEDTNKDIKMVYTPNGGGIKLNTKTNEFLFNQREKPTGKYT
                     KEYTKALLEAVNIVDNSPYKKFYEPKYLDPEFHTGEKSTLLEFKDWQKIYLKDPVKGS
                     LAPWTKAEKAYYNSLDGEGRYNYLVKRSGLVCTPIDLKDSALIRPKRPKEKRFINAYK
                     EGMKDYKEAKRLDYKGYDLFQKAIKNLSYAYEEGKDYKAGLALAELGYSKDYFRAIIG
                     KLDQDENNEALLDKLINEFLNANYRSIRIYEELIEKYDLGDAYWGLYVYSRKIEDTVF
                     DDRFYFAQLKDSSEELYKNAFEHGAYGAFGAKANTIYSDLIAGEYQLCLGILGNKKAF
                     YEAAVYLSDSGLKSRAFQALWLGVQLGDEKCLEGLYRPLYGIHENPLKRQLMKDFAKN
                     PPYDKYGMLPFLDELISTEWIIDPNEYDFIYDINNRVVTAMLNGIDKGKYKDPRDVDS
                     TPESRWEFDQEIDAYKEGSVRSYSYDLPNHWSEADVEIYLEELYLHAKLAALTPPQGY
                     PNAPRYYSPERLEFIYNKHKLDSKLDPRIPAIYRANFPEELRAKIRAFAKEHNIKE"
     gene            complement(6183..6512)
                     /locus_tag="ACJFEZ_001262"
     CDS             complement(6183..6512)
                     /locus_tag="ACJFEZ_001262"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917381.1"
                     /translation="MKKFILISSILSSFFIFAEANELPSDKIQPEVKVIKEHFKNKVE
                     KIEFEAWAKGMGLNFSTQKYLNNQNYKKYAKTMAKLIRKTRGVKGKVEICYEGTPQKR
                     VHKCNKF"
     gene            complement(6588..6675)
                     /locus_tag="ACJFEZ_001263"
     tRNA            complement(6588..6675)
                     /locus_tag="ACJFEZ_001263"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6639..6641),aa:Ser,seq:tga)
     gene            complement(6707..6780)
                     /locus_tag="ACJFEZ_001264"
     tRNA            complement(6707..6780)
                     /locus_tag="ACJFEZ_001264"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6746..6748),aa:Cys,seq:gca)
     gene            complement(6801..6889)
                     /locus_tag="ACJFEZ_001265"
     tRNA            complement(6801..6889)
                     /locus_tag="ACJFEZ_001265"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6853..6855),aa:Leu,seq:taa)
     gene            complement(6899..6973)
                     /locus_tag="ACJFEZ_001266"
     tRNA            complement(6899..6973)
                     /locus_tag="ACJFEZ_001266"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6939..6941),aa:Gly,seq:gcc)
     gene            complement(7033..>7752)
                     /locus_tag="ACJFEZ_001267"
     CDS             complement(7033..>7752)
                     /locus_tag="ACJFEZ_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917382.1"
                     /translation="CLVLFVAGVIFNVEFLNKNKTTQTLNFSRSIETSMEAKPDIFHA
                     NINFWANENLSTQTFLSNEDKIQISNTFNQILERSKKENFCSGGSFSLEPNFSYKDGV
                     QTPKGQRLHANLECEFTADKLENFNKLLNDLNSIIAKSEFIGISTPALEPKFSKQTLK
                     DNKEKLYSELLKKAYSYEKIYSLDLNKTCILKNLNIKSIPNFYPRALNSMKSADNMEL
                     SLPIVKDEEQSISGTALFICK"
BASE COUNT         2443 a         1206 c         1258 g         2845 t
ORIGIN      
        1 aaagaaaaat gctagaaatt tagatttttt acccagtaag tgtgttaaaa taagcttaat
       61 tttgcgatat caaattttaa ggaaaatgta tgaatactcc taagtggact cgttatgaca
      121 cgagatgggt tttatctctt tttggaaccg ctgtgggtgc ggggatttta tttttaccta
      181 ttaaggcggg tgttggtggt ttttggccag ttgttgtgat gactttgatt atttttccaa
      241 tggtgtattt aagccataga gccttaagtc gttttgtatg tcaagcaaat ggtaatgata
      301 aagacattac ccatgcggct gaagagtatt ttggtagaaa agtaagtatt tttatttctg
      361 tgctttattt ctttgcaatt tttccaattt gtttagcgta ttgtgtgggt ataaccaata
      421 cttttgaaag ttttatctac catcaatttt tacccctttt aaattcagag ggtgtatttg
      481 cagatattat tcgtgctatg tatgaggtaa gcacagatga taaagaaaaa gttgtagcga
      541 gtttatttcc tttttatcgt ttgcttttag cttttatttt ggtaagtatt tttatgctta
      601 ttatgctttt tagcgaagag ttaatcacta aagtatgtga atggcttgtg tatcctttat
      661 gtgctatttt atttttattt tctttatatc ttatcccaca atggtcattt gaaagtttta
      721 gtgctattcc tggaacaaaa gaatttatta ctatagtatg gctaacttta ccggttttag
      781 tgttttcatt taatcactca ccagcaattt caactttttc tctaagcgta aaaagagaat
      841 atcctgaaaa ttcagtacaa aaagcaaatc aaattttgtt tagaacctct gtcatgttgc
      901 ttgcttttgt tatgtttttt gtggtatctt gcgtgctttc tttaactcca gctgaacttg
      961 ctgaagcaag agcacaaaac ataccggtgc tttcttattt tgctaataag cttgataatc
     1021 catttatttc ttatggtggt ccattaatcg catttttggc aatttctagt tcattctttg
     1081 gacattattt tggcgctaga gaaggtgctt atggtatagt tagaaaatgc tgcaaattag
     1141 caggtaatga aaatcctgat ttgaaaaaaa tcgcagttta ttctacttta gtaatgtata
     1201 ttgttatgtt aattactgct tatatcaatc ctagtatttt aggttttatt gaaagtttgg
     1261 gcggtccaat tatcgcagca atcttatttt taatgccaat tattgcaatt tatacggttt
     1321 caaaaatgaa aaaattccaa aataaagctt tagatgcttt tgtttttatt acaggtgttt
     1381 taacaatcat cactgtaatt tatacttttt aaggtgtggt gaatgagtaa tttaaatatt
     1441 tttaaaatag gtgtaggtcc ttcatcatca catactttag gacctatgct tgcaggaaat
     1501 ttattttgta aaaaaattgc taaaaaatta gaaaaaattg aaagaattca aatcattctt
     1561 tatggctctt tgtctttaac aggcaaagga cacttgagtg ataaggctgt aatttggggg
     1621 ttaaatggct tagaagctaa aaatttaagt gcggcaatac aagatgaagt aaataaaaat
     1681 gctattgaaa atgctcaaat tgatttttgt ggcgagaaaa aacttagttt taattatgaa
     1741 aaagatttga tattttctaa agatttttta cctttacatg agaatggtat gaaaattaaa
     1801 gcttatgatt gtaaaggtgg gttagttgat gaggaaactt attattctgt aggtggaggc
     1861 tttgttttaa cagctgcaca attagaaaaa aaaggtaaaa attctaacca aaataaaaag
     1921 aaaaaactag atatagagct taataacgct aaagaagctt tagagctttg cgataaaaga
     1981 gattgggatt tagcagagct ttcctatcgt tatgaattgc aatttcacac taaagaggaa
     2041 attcgtgctt attgtcttga aatttgggaa gtgatgcaag aagtgtatta taatggtacg
     2101 cacccgaatg aagattattt gcctggaaaa cttcatttaa aacgtagagc taaagggctt
     2161 aaagaaagag tagcgatgac agctgatcct atgggcatta tagattttat ttctttatat
     2221 gctattgcga ttgctgaaga aaatgctagc ggagcaaaag tcgtaacagc gccaacaaat
     2281 ggagcatgtg ctgttatccc tgctgtcatg ctttatctta aaaaccatac cataggtttt
     2341 agtgatgaaa aggcaattga atttttatta gtagctatgc ttataggttc tttttataag
     2401 aaaaatgcaa gtattagtgg agcagaagca ggttgtcaag cagaaattgg tagtgctagt
     2461 tctatggcag ctgcggctat ggccacagtt ttaggagcta atgcttttaa ggcttgcaac
     2521 gctgctgaaa tggcaatgga gcatcatcta ggacttactt gtgatcctgt agggggcttg
     2581 gttcaaattc catgcattga aagaaatgct tttggggcga taaaagctat cagtgcagct
     2641 agaatggcaa tgacacgcaa atctattcct atagtcagcc ttgatgaggt gatagaaacc
     2701 atgtatgaaa ctggtaagga tatgaattac aaatacaaag aaacttcttt aggcggactt
     2761 gctacaaatt taaaaacagt gtgctaagat tttactttgc acacttttaa ataaataaat
     2821 ttttataaaa tttaaggtat ttttgtttat ttttttgcgt attttttcat tctttgggtt
     2881 aaaaattctt tcatttcttc tttgctaaaa ctttttaaaa tgcgaatttg tttaaaaagt
     2941 aagccaaggt tgatgatacc cataaccaaa agcaacaaac aaatcatcaa aaaaacaaga
     3001 tcaacagcac caaattcatt gatggcagcc aagcttgcaa aaaatacact cgctaaaaat
     3061 aaaaaaatta aaagcaagac ttgttttaat tttgcttcag caaaattatc actattttga
     3121 gtaaaatttc taaaaagtat gatttttttg cctaaatttg aaattaaaat ttcatcattt
     3181 tctttaaaca aattttcttt caaactttga taaaaaaaga tttcattgtt taaatttagc
     3241 tcatctttga agcttgctag cgtataatct ttataaaaaa aagatttgat ttcgcttttc
     3301 ttttctattt taaataatct taaatcattt cttgcataaa aaaatccgct aaagctcata
     3361 aatgccataa gtgtcactcc ctaaaaaatt tctataaagt ggcttgaaat tcaaaggcat
     3421 tgtaacattt ttttcatcat ttaaacttga actttgaaaa atcaaaaaca tatccatctc
     3481 atctttgaat ttttttagga aattttctcc accctcatac attaaaaatt tagctttatt
     3541 aggaatttga gtataaattt gacgatgagg cacgctaaat aaaggaatgc ttttgtcaaa
     3601 attttctaaa ttttgatgac ttaaaataca aagattaggc gccttgcctt tacaaagtct
     3661 tgcatcaagt atgggacgat cttttcttat cgtttctcct cctaacacaa gcaaatcaat
     3721 cacagaacga attttatgcg cataagtacg acttagctca ttgcttacga ttttgccaaa
     3781 aggcgagcca ttcatagaaa gagcgagttt gaaaagttta aattgtcctt tttgccattt
     3841 taaaaaaggt tttaaaagtt tttttccctc atctttaagc acaccaaatt caatctctac
     3901 tccttgtttt tttaaaaact ccgcaccttt acttgcaatc tcattctcat ctttaacgct
     3961 gatgaaaatt tttttaaaac ctagctcgct aaagagtttt gcacaaggag gcgtttttcc
     4021 ttgatgagag caaggctcaa gtgtgacaaa agctatgcta tctttaaaaa tacctctatg
     4081 gtttttgcaa ataaattcat gcatcgcatt ggcttcttga ggtaatgaaa tttcagggtt
     4141 taaatttgta aaagcatggg ctatagcatt taattctgca tgagcacatc ctgctttttc
     4201 atgggctttt atggctaaaa ttttttcatt tttgtctagt ataacgcaac ctacagcagg
     4261 attagggtag gttaaaaact gatatttcca agcttcattt aatgctaaat tcatataaaa
     4321 atttttcatt tcattccttt atattatgct ctttagcaaa agctcttatc ttagctctaa
     4381 gctcttcagg aaagttagct ctataaatag cagggattct aggatcaagt ttagaatcaa
     4441 gtttgtgttt gttgtaaata aattctaatc tttcaggact atagtatctt ggtgcattag
     4501 gatagccttg aggaggagtt aaagctgcga gtttggcatg taaataaagc tcttctaaat
     4561 aaatttctac atctgcttca ctccagtgat tgggtaaatc ataactataa cttcttacag
     4621 aaccttcttt ataagcatct atttcttggt caaattccca tctactttca ggagtagaat
     4681 ccacatctct tggatcttta tatttaccct tatcgattcc atttagcatt gccgtcacta
     4741 ctctattatt aatatcgtaa atgaaatcat attcatttgg atctataatc cattctgtag
     4801 agattaactc atctaaaaaa ggaagcattc cgtatttgtc ataaggagga tttttagcaa
     4861 agtctttcat gagttgtctt tttaaagggt tttcatgtat tccatataaa ggacgataca
     4921 atccttctaa acatttttca tctcctaatt gcactccaag ccaaagagct tgaaaggctc
     4981 ttgattttaa accagaatca ctaagatata cagctgcttc ataaaaagcc tttttattgc
     5041 ccaatatacc taagcaaagt tgatattctc ctgcaattaa atcagaatat atagtatttg
     5101 ccttagcacc aaaagctcca taagctccat gttcaaaagc atttttataa agctcttcac
     5161 tgctatcttt aagctgagca aaataaaatc tatcatcaaa tactgtatct tctattttac
     5221 gagaataaac atataaaccc caataagcat cccctaagtc atacttttct ataagttctt
     5281 cataaatcct tatgcttcta taattagcat ttaaaaattc attgattagt ttatccaaca
     5341 aagcttcatt gttttcatct tggtctaatt tacctataat ggctctaaaa taatcttttg
     5401 aatatccaag ttctgctaaa gcaagtcctg ctttataatc tttaccctct tcataagcat
     5461 agcttaaatt cttaatggct ttttgaaaaa gatcatatcc tttataatct agtctcttag
     5521 cttctttata atctttcata ccttctttat aagcatttat aaatcttttt tctttaggtc
     5581 ttttaggtct tattaaagca ctatctttta aatctatggg agtacatact aagccacttc
     5641 tttttactaa ataattatac cttccttctc catctaaaga attataataa gctttttctg
     5701 ctttggtcca aggagctaag cttcctttaa caggatcttt taaatagatc ttttgccaat
     5761 ctttaaattc aagcaaagtg gatttctctc ctgtgtgaaa ctctggatct aaatatttag
     5821 gctcataaaa ttttttataa ggggaattat cgactatatt gacagcttct aaaagggctt
     5881 tggtgtattc tttggtgtat ttgccagtgg gtttttctcg ttgattaaat aaaaattcat
     5941 tggtttttgt attgagtttt atacctcctc cattaggagt atagaccatt ttaatatctt
     6001 tattggtatc ttcattgtta ttcatatcct ctcctttgca agcatttaag ccaaagatta
     6061 ttgatatgag caaaataatt ttaaacatgc cttttcctta atgatatata attaagaaat
     6121 tgtagctttt ttatagtgaa aaaaacttaa aaattttata tgatattaat ttaagtcagg
     6181 aattaaaatt tattgcattt gtgaactctt ttttgaggtg ttccttcata acaaatttca
     6241 accttgcctt taactcctct tgtttttctg atgagttttg ccatagtttt ggcatatttt
     6301 ttatagtttt gattgttaag atatttttga gttgagaaat ttaaacccat gccttttgcc
     6361 catgcttcaa attctatctt ttctactttg tttttaaaat gttctttgat aacttttact
     6421 tcgggttgga ttttatcact tggcagttca tttgcctcgg caaatataaa aaaagatgaa
     6481 agtatagatg agattaagat gaattttttc ataaattgat ttccttattt tttagatcaa
     6541 atcaatttat cataacagag tttgttaaac taatgaaaat ttcaaagtgg ccgggagaaa
     6601 gggattcgaa cccctggagg tgtgaccctc aacggttttc aagaccgccg ctttcgacca
     6661 ctcagccatc tcccgaattg aagttgtaaa aattaattgc cttttttgga ggcgacatcc
     6721 ggattcgaac cggagatcaa ggctttgcag gcccatgcct taccgcttgg ctatgtcgcc
     6781 ctgataattt ttagaaaaag tggtgcccga ggccggactt gaaccggcac ggaagaaaaa
     6841 ttccgaggga ttttaagtcc cttgtgtcta ccaattccac cacccgggcg ggtgataatg
     6901 gagcgggaaa cgagattcga actcgcgacc ccaaccttgg caaggttgtg ctctacccct
     6961 gagctattcc cgcgtaaagc taaagatgaa attctagcaa aataaactta aaatgagttt
     7021 attttgcttt gattatttgc aaataaataa agcagtaccg ctaatgcttt gttcttcatc
     7081 ctttactata ggcaatgaaa gctccatatt atcagcgctt ttcatactat ttaaagccct
     7141 tggataaaaa tttggaattg atttaatatt tagatttttt aatatacaag ttttgttaag
     7201 atctaaagaa taaatttttt cataagaata agcttttttt agaagttcgc tataaagttt
     7261 ttctttattg tcttttaggg tttgtttgga gaatttaggc tctaaggcag gtgtagaaat
     7321 acctataaat tcactttttg caatgatgga gtttaaatca tttaaaagtt tgttaaaatt
     7381 ttctagttta tctgctgtaa actcacattc taaatttgca tgaagtcttt gtcctttagg
     7441 ggtttgaact ccatctttat aagaaaaatt aggttcaagt gaaaaacttc cgccactgca
     7501 aaaattttct tttttagagc gttctaaaat ttgattaaaa gtgttagaaa tttgaatttt
     7561 atcttcattg cttaaaaagg tttgagtgct taaattttca tttgcccaaa agttgatatt
     7621 tgcatgaaaa atatcgggtt tagcttccat acttgtttct atacttcttg agaaatttaa
     7681 agtttgagta gttttgtttt tatttaaaaa ctctacatta aaaatcactc cagctacaaa
     7741 aagtaccaaa ca
//
LOCUS       DBBXRO010000078         7742 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.079, whole genome shotgun sequence.
ACCESSION   DBBXRO010000078 DBBXRO010000000
VERSION     DBBXRO010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7742
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.079"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            25..597
                     /locus_tag="ACJFEZ_001268"
     CDS             25..597
                     /locus_tag="ACJFEZ_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917383.1"
                     /translation="MKKMFYGIAASLILATSLSAVSFNQDSLKVSFEGYKTEDMVGVG
                     GEFKDVKYKFSKNTSTLASYLKGARAVVNPSSVFMGEGNEIITDNLAKVFFPSLLGNS
                     DIKVVFKDVVTGENKGVISARVTIDKKSTLVPLSYTIENNKFVAKGQLDLHAFKNSSQ
                     ALKALSDVAPGHGGISWPLVDIVFSADVVQ"
     gene            complement(598..1197)
                     /gene="rsmG"
                     /locus_tag="ACJFEZ_001269"
     CDS             complement(598..1197)
                     /gene="rsmG"
                     /locus_tag="ACJFEZ_001269"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HGG0917384.1"
                     /translation="MNLDFLNLILSDFNEEDFRAKLKIYKEILNKFNRIHNLTQLKNI
                     DENILDSIEILKYFDFSKAKNIVDIGSGAGFPAIFLAFILPSNFHLFEPNPKKAAFLR
                     SIKIECNLTNLTVYKEKVENYKSSFKADIITSRALMDVKPLIKLCLNISDQKTIFILW
                     KGSEIFDEVEGLKDYDIFENGLRRYCVLKNTQSGMNTTL"
     gene            complement(1194..1754)
                     /gene="ribA"
                     /locus_tag="ACJFEZ_001270"
     CDS             complement(1194..1754)
                     /gene="ribA"
                     /locus_tag="ACJFEZ_001270"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HGG0917385.1"
                     /translation="MDIKISEIANLPSKWGSFQIQSFKEGEKEHLCIFKNTPQDILNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKHGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYKISKVNLLTNNPQKIHSIQDKIMAR
                     VPILINPNRFNANYLEVKQNQMGHLL"
     gene            1811..2794
                     /gene="hemB"
                     /locus_tag="ACJFEZ_001271"
     CDS             1811..2794
                     /gene="hemB"
                     /locus_tag="ACJFEZ_001271"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HGG0917386.1"
                     /translation="MFKRFRRLRLNESLRAMVREHTLSINDFIYPLFVVNGKGIKKEI
                     SSMPDVFQMSLDEILKECKIISELGIKAIILFGVLENDKKDSCGSDAMDDEGLIARSI
                     REIKKEFPNLFVTSDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMIAPSGMMDGIIETLRKALDEEGFENLPIMAYSTKFASSYYGPFRDVADSTPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAGRAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2791..3702
                     /gene="argF"
                     /locus_tag="ACJFEZ_001272"
     CDS             2791..3702
                     /gene="argF"
                     /locus_tag="ACJFEZ_001272"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002832279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HGG0917387.1"
                     /translation="MRHFLTLRDFSKYEILSLVEHASELKKNPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPIKDTARVIGAMVDFVMMRVNKHE
                     SLVEFAKYSKAPVINALSELYHPTQVLGDLLTIKECGKMKDDIAKVAFVGDSNNMCNS
                     WLIAAVILGFDFSVALPKNYEINSEILEFAKEKAKISGAKIFLTHDKFEAIKGKDVVI
                     TDTWVSMGEESEKEKKIKDFDGFIIDEEAMNAANQDAILLHCLPAYRGYEVSEESFEK
                     HSKVIFEEAKNRLYVVKALLCFLNKEK"
     gene            3752..4243
                     /locus_tag="ACJFEZ_001273"
     CDS             3752..4243
                     /locus_tag="ACJFEZ_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HGG0917388.1"
                     /translation="MKELEKYSNCLKRIDEFSQNLGMKKEDRAIFEMKQSENENEKCL
                     ILKNGSFDSPEPWFIMDENDQIHTLISLNSLKNILENLKQTQKENFELRLEKAIYQQI
                     PIDFSDVWIVAMDEIKRKAQEGVMEISIDLEKLLADIKKEHPNLFVDMQAMVERVKNN
                     ERL"
     gene            4230..5585
                     /gene="hemN"
                     /locus_tag="ACJFEZ_001274"
     CDS             4230..5585
                     /gene="hemN"
                     /locus_tag="ACJFEZ_001274"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HGG0917389.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQNK
                     ALSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLKYLFQELDILSTIIDTKREVVQM
                     HFGGGTPTFFSAKQLESLILKIKSVFGNFTKDAEISCEIDPRFLNEEQADVLTKNGFN
                     RISFGVQDFDERVQKEIHRIQPFELTQNALKLVRDRGIKSVNMDLIYGLPFQSLQSFA
                     KTLEKAMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLIQNG
                     YKMIGMDHFAKEEDELFKALENGTLHRNFQGYTAKGGADLIGIGLTSIGEGQSHYAQN
                     FKDMPSYEAAISKGRLPFERGIKLSYDDELRKAVIMDLMANFRLDIKAIEKEFKINFK
                     EYFKEDLKALEEYKEFIDLSENFILVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            5596..6861
                     /locus_tag="ACJFEZ_001275"
     CDS             5596..6861
                     /locus_tag="ACJFEZ_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HGG0917390.1"
                     /translation="MNFSQISDACVKCGKCIPVCTIHEVNRDETTSPRGFLDLLAAYK
                     EEKLELDKEAKKIFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKIIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQSQDQNVGMNAKFSMPFVKKGRLLTSFNKKSF
                     LNSNPDFIDNGGEKTVGFFVGCLANYFYIDTANAVLKIAKEVKINVDLMKEQVCCSAP
                     QFFTGDFKSVEILAKKNIEYFEKKLEKLDAIIIPEATCSAMLKIDLEHFFNMQNEPEW
                     AKRAQKISSRIYMASEYFYKFTNLKELLESKKKLNYSITYHDPCHARKMQGVFKEPRE
                     LLKANYHFVEMSNPNACCGFGGVSMQTDYYDRALSVGLKKASMIDESKACVVSAECSA
                     CRMQISNALEQNSSKAIFASPLELIAKAL"
     gene            6862..7602
                     /locus_tag="ACJFEZ_001276"
     CDS             6862..7602
                     /locus_tag="ACJFEZ_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5416 family protein"
                     /protein_id="HGG0917391.1"
                     /translation="MKITFQGKSDEYEIEKSYFYNRAFIVKDKIPNRDKIDFITDSVR
                     LLEFSDHSFEFDEILKCLYDENEENTIIVEEIFTTSQIKQDEEPRNPPLEIKIDEAPK
                     NNTRFTPFNTFSRIFNKDCFIFTSDNCEQKESVKVEKNQKLNIFESLKIEDLDASFVK
                     IEILDYDASNDSVNFDLDAFPSGASYKYGISQNTMYIILQGKMPSLLLLDFLKSFVYK
                     NKKELACEKTFVLMLNHKLVYELKAFFT"
     gene            complement(7605..>7742)
                     /locus_tag="ACJFEZ_001277"
     CDS             complement(7605..>7742)
                     /locus_tag="ACJFEZ_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917392.1"
                     /translation="YEKKLELLNQSIQNIKEEVNELKNTTQNNRSLIEKNRSDIESIN
                     K"
BASE COUNT         2738 a          942 c         1476 g         2586 t
ORIGIN      
        1 attttattaa aaaaggataa aaaaatgaaa aaaatgtttt atggcatcgc agcctctttg
       61 atacttgcaa caagtttgag tgctgtttct ttcaatcaag atagcttgaa agttagtttt
      121 gaaggatata agaccgaaga tatggtagga gtgggtggag aatttaaaga tgttaaatat
      181 aaattttcta aaaatactag tactttggca agctatttaa aaggtgctag agcagtggta
      241 aatccaagca gcgtttttat gggtgagggc aatgaaatca ttacagataa tcttgctaaa
      301 gtatttttcc ctagtttgct tggaaattca gatattaaag tggtttttaa agatgtagtt
      361 acaggtgaga ataaaggcgt gatctcagct agagtaacta tagataaaaa gagcacgctt
      421 gtgcctttaa gctatactat agaaaacaat aaatttgtag ccaaaggaca gcttgattta
      481 catgctttta aaaatagctc tcaagctcta aaagctttga gtgatgttgc accaggacat
      541 ggcggaattt catggccttt agtagatatc gtttttagcg ctgatgtagt acaataatta
      601 caaagtggta ttcataccac tttgagtatt ttttaaaacg caataccttc ttaagccatt
      661 ttcaaaaata tcataatctt tcaacccttc tacttcatca aaaatttcac ttcctttcca
      721 aagtataaaa attgtttttt gatcacttat atttaaacaa agttttatta agggttttac
      781 atccataaga gctcttgaag tgataatatc ggctttaaat gagcttttat aattttcaac
      841 tttttctttg tatacggtta aatttgttaa gttacattct attttgatac ttcttaaaaa
      901 tgcagctttt tttggattgg gttcaaaaag atgaaaattg cttggtaaaa taaaggctaa
      961 aaaaatagca ggaaagccag caccgctacc gatatcgact atattttttg cctttgaaaa
     1021 atcaaaatat ttaagaattt caatgctatc taaaatattt tcatctatat tttttaattg
     1081 agtgagatta tgaatgcggt taaatttatt tagaatttct ttatagattt taagcttagc
     1141 cctaaaatct tcttcattaa aatcagataa aattaaattt aaaaaatcca aattcaaagt
     1201 aaatgcccca tttgattttg ttttacctct aaataatttg cattgaagcg gttaggattt
     1261 ataagtatag gaacgcgcgc catgatttta tcttgtatag agtgaatttt ttgtggattg
     1321 ttagtaagta aattaacctt agaaatttta taatgtttta gtataaattc tactatttca
     1381 taagttctct catcagcctt aaagcctagt tggtgattag cttttatggt atcaaaaccc
     1441 ttatcttgca aagcataagc attgacttta ttaaaaagtc caattccacg tccttcttgc
     1501 cttaggtaaa tcaccattcc accatgtttt tctatatatt ttaatgaaaa ttcaagttgt
     1561 tctccgcaat cgcattttaa gcttcctaag gcatcccctg ttaaacattc tgaatgaatt
     1621 cttaaattta ggatatcttg tggagtgttt ttaaatatac ataaatgttc tttttctcct
     1681 tctttgaagc tttgaatttg aaaactaccc catttgctag gtagatttgc aatttctgaa
     1741 atttttatat ccatttacta ctctttataa tcaaaattat gataacattg tagcaaaaaa
     1801 aggacaaaaa atgtttaaaa gattccgcag acttagactt aatgagagtt taagggctat
     1861 ggtaagagaa cacactctta gtattaatga ttttatttat cctctttttg ttgtaaatgg
     1921 taaaggaatt aaaaaagaaa tttcatctat gcctgatgta tttcaaatga gtttagatga
     1981 aattttaaaa gaatgtaaaa tcataagcga gctgggtata aaagcgatta ttctttttgg
     2041 tgttcttgaa aatgataaaa aagatagctg cggaagtgat gcgatggacg atgagggact
     2101 tattgcaaga agtataagag agataaaaaa agaatttcca aatctttttg ttaccagcga
     2161 tctttgcttt tgtgaatata ctgatcatgg gcattgtggg ataattgatc ctaaaaccaa
     2221 aagtgtagat aatgacgcaa ctttagaaat ttcagccaag caagccttag tccatgcaag
     2281 agcgggggtt gatatgatag cacctagcgg gatgatggat ggtattatag aaactttacg
     2341 caaagcctta gatgaggaag gttttgaaaa tttgcctata atggcatatt ctactaaatt
     2401 tgcttcaagt tattatgggc cgtttcgtga tgtagcggat tcaacgccaa gttatggaga
     2461 tagaaaaagc tatcaaatgg attttgcaaa tggaaaagaa gccttagaag aaagcttgga
     2521 agatgaagca caaggagcgg atattttaat ggtaaaaccc gctttagctt atcttgatgt
     2581 agtgaaagaa atttcacttc attctaattt gcctttgtgt gtttataatg taagtggtga
     2641 gtatgccatg ctaaaagcag cgggtcgtgc aggagtgatt gattatgaaa aagttttata
     2701 tgagacaatg atagctttta aaagagcggg tgcaaagcta attatcactt atcacgctaa
     2761 agaattagct aaaatgttaa aaggagaaaa atgagacatt ttttaacact aagagacttt
     2821 tctaaatatg aaattttaag ccttgtagag catgcaagcg agcttaaaaa aaatcccaaa
     2881 aagcttttgc aagataaaac tttagcaatg atttttgaaa aaaactccac aagaactaga
     2941 atggcttttg agcttgctat cacagagctt ggtggaaagg ctttattttt aagcagtaat
     3001 gatttgcaat taagccgagg tgagcctata aaagacacag ctagagttat tggggcgatg
     3061 gttgattttg taatgatgag ggtaaacaag catgaaagtt tagtagaatt tgcaaaatat
     3121 tctaaagcac cagttatcaa tgctctaagc gagctttatc atccaacgca agttttaggg
     3181 gatttactca ctataaaaga atgtggcaaa atgaaagatg atatagctaa ggtagctttt
     3241 gtgggcgata gcaataatat gtgtaattct tggcttattg cagctgtgat tttgggattt
     3301 gattttagtg ttgcattgcc aaaaaattat gaaatcaata gtgaaatttt agaatttgcc
     3361 aaagaaaaag caaaaatttc gggagcaaaa atctttttga ctcatgataa atttgaggcc
     3421 ataaaaggta aagatgtagt cattaccgat acttgggttt ctatgggtga agagagtgaa
     3481 aaagaaaaga aaattaaaga ttttgacggc tttattattg acgaagaggc tatgaatgcg
     3541 gcaaatcaag atgcgatttt attgcactgc ttacctgctt ataggggtta tgaagtaagc
     3601 gaagagagct ttgaaaagca ttcaaaagtg atttttgaag aagcaaaaaa tcgcctttat
     3661 gtggtaaaag ccttgctttg ctttttaaat aaggaaaaat aagattttat ataatttcat
     3721 aagttggaga agataggata aggagttttt agtgaaagaa cttgaaaaat atagtaattg
     3781 cttaaaacgc attgatgaat ttagccaaaa tttaggcatg aaaaaagagg atagagctat
     3841 atttgaaatg aagcaaagtg agaatgaaaa cgaaaaatgc ttgatactta aaaatggtag
     3901 ttttgattct cctgaacctt ggtttataat ggatgaaaat gatcaaattc atacacttat
     3961 ttctttaaat agtcttaaaa atattttaga aaatttaaaa caaactcaaa aagagaattt
     4021 tgaacttcgc cttgaaaaag cgatttatca gcaaattcct attgatttta gtgatgtgtg
     4081 gatagtggca atggatgaga taaaacgcaa ggcgcaagag ggtgttatgg agatcagtat
     4141 tgatcttgaa aaattgcttg cagatattaa aaaagaacat ccaaatttat ttgtagatat
     4201 gcaagctatg gtagaaaggg taaaaaataa tgagagatta taaggctttt gtgaaatatt
     4261 ctaaggcagg accgcgttat acttcttatc ctactgcagt ggaatttaac acaaatttca
     4321 aatatgaaga atatatagaa attttaaaaa agcaaaacaa agctttatcg ctttattttc
     4381 atttgccttt ttgcagaagc gcttgttatt tctgtggctg taatgttatt tataccgcca
     4441 aagaagaaag taaggagaga tatttaaaat atctttttca agaacttgat attttaagca
     4501 ctattataga tactaaaaga gaagtggtgc aaatgcactt tggtggtggg acgcctactt
     4561 tttttagtgc taaacagcta gaaagtttaa ttttaaaaat taaatctgtt tttggaaatt
     4621 ttaccaaaga tgctgaaatt agctgtgaaa ttgatccgcg ttttttaaat gaagagcaag
     4681 ctgatgtttt aaccaaaaat ggttttaatc gcatcagttt tggcgtgcaa gattttgatg
     4741 aaagagtgca aaaagaaatt catagaattc aaccctttga gctaacgcaa aatgctttaa
     4801 aattggtaag agataggggg ataaaatctg tcaatatgga tttgatttat ggtttgcctt
     4861 ttcaaagttt gcaaagcttt gctaaaacct tggaaaaagc tatgctttta aatccggatc
     4921 gtttggctat ttttaattac gctcatgtac cttggcttaa gaaaaatatg agaaaatttg
     4981 atgaaaatac tttgccaagc cctgatgtta agcttgaaat tttggaattt tgtgagaaat
     5041 ttttgattca aaatggttat aaaatgatag gtatggatca ttttgccaaa gaagaagacg
     5101 agctttttaa agctttggaa aatgggactt tacataggaa tttccaaggc tatactgcta
     5161 agggcggcgc agatttgatc ggtataggac ttactagtat aggagaagga caaagtcatt
     5221 atgcacaaaa ttttaaagat atgccaagct atgaagctgc gattagcaag ggaagattgc
     5281 cttttgaaag agggattaag ctaagctatg atgatgagct tagaaaagct gtgattatgg
     5341 atttgatggc aaattttaga ctagatatta aagctataga gaaagaattt aaaatcaatt
     5401 ttaaagagta ttttaaagaa gatttaaaag ctttggagga atataaagaa tttattgatt
     5461 tgagtgaaaa ttttatttta gtaaatgaaa caggcgtttt gttgatacga aatatagcta
     5521 tgtgttttga tgcttatatg aaaaatataa gtgaagataa aaaagtcttt tctaaaacgg
     5581 tttgatgggg tggtgatgaa ttttagtcaa ataagtgatg cttgcgttaa atgtggaaaa
     5641 tgtattccgg tttgtactat tcatgaagta aatcgcgatg aaactacaag ccctaggggt
     5701 tttttagatc ttttagcagc ttataaggaa gaaaaattag agctagataa agaggctaaa
     5761 aagatttttg aatcctgttt tttgtgtaca aattgcgtcg aggtttgtcc gagtaaatta
     5821 agagtagata atgccatcga agaagtgcgc tatgatatag ctaaaaaatt tggtatagca
     5881 tggtataaaa aaattatctt ttttttctta agaaggcgta aaattttaga tttggtcgcg
     5941 aaattaggct atgtgtttca aagctgtgct tttaaaattc aaagtcagga tcaaaatgta
     6001 ggtatgaatg ctaaattttc catgcctttt gttaaaaaag gaagattgct tacgagtttt
     6061 aataaaaaaa gttttttaaa ttcaaaccct gattttatcg acaatggagg agaaaaaact
     6121 gtaggttttt ttgtgggttg tttggcaaat tatttttaca tagacacagc taatgctgta
     6181 cttaaaatcg ccaaagaagt aaaaatcaat gtggatttaa tgaaagagca agtttgttgt
     6241 agtgcaccgc aattttttac aggtgatttt aaaagtgttg aaattttggc taagaaaaat
     6301 atagaatatt ttgaaaaaaa attagaaaag cttgatgcta ttatcattcc tgaggcaact
     6361 tgctcggcaa tgttgaaaat agatttagaa cattttttta atatgcaaaa tgagccagag
     6421 tgggccaaaa gagctcaaaa gatttcctct cgcatctata tggctagtga gtatttttat
     6481 aaatttacaa atttaaaaga gcttttagaa agtaagaaaa agcttaatta tagcattact
     6541 tatcatgatc cttgtcatgc gagaaagatg caaggggttt ttaaagagcc tagagagctt
     6601 ttaaaagcaa attatcattt cgttgaaatg agtaatccta atgcatgctg tggttttggt
     6661 ggggtaagta tgcaaacgga ttattatgat agggctttga gcgtaggact taaaaaagca
     6721 agtatgattg atgaaagcaa agcttgtgta gttagtgccg aatgttcggc atgtagaatg
     6781 caaatttcaa atgctttgga gcaaaattct agtaaagcaa tttttgcaag tcctttggaa
     6841 cttatagcga aagccttata gatgaaaata acttttcaag gtaaaagtga tgaatatgag
     6901 atagaaaaat catattttta caatagggca tttatagtta aggataaaat tcccaataga
     6961 gataagatcg actttataac tgatagtgta aggcttttgg aatttagtga tcatagcttt
     7021 gaatttgatg aaattttaaa atgcttgtat gatgaaaatg aagaaaatac catcatagta
     7081 gaggaaattt ttacaacaag tcaaataaaa caagatgaag agccacgcaa tccaccttta
     7141 gaaataaaga ttgatgaagc tcctaaaaat aatacaagat ttactccttt taatactttt
     7201 tcaagaatct ttaacaagga ttgctttatt tttacatccg ataattgtga gcaaaaagaa
     7261 agtgtgaagg tagaaaaaaa tcaaaaattg aatatttttg aatcattgaa aattgaagat
     7321 ttagatgcta gttttgtaaa gattgaaatt ttagattatg atgctagtaa tgacagtgtg
     7381 aattttgacc ttgatgcctt tcctagcgga gcaagttata agtatggaat ttctcaaaac
     7441 accatgtata taattttaca aggaaaaatg ccaagccttt tacttcttga ttttttaaaa
     7501 agttttgttt ataaaaacaa aaaagagcta gcttgtgaga aaacatttgt tttaatgtta
     7561 aatcacaagt tagtttatga gcttaaggct ttttttactt gaaattattt gttgatactt
     7621 tcaatatcag agcgattttt ttcaatcaaa gagcgattgt tttgagtagt gtttttaagt
     7681 tcattcactt cttcttttat attttgtatg ctttgattta aaagctcaag ttttttctca
     7741 ta
//
LOCUS       DBBXRO010000079         7724 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.080, whole genome shotgun sequence.
ACCESSION   DBBXRO010000079 DBBXRO010000000
VERSION     DBBXRO010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7724
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.080"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(147..500)
                     /gene="rplQ"
                     /locus_tag="ACJFEZ_001278"
     CDS             complement(147..500)
                     /gene="rplQ"
                     /locus_tag="ACJFEZ_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HGG0917393.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFAALQDKNATNKLVTEIAPNFKERNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            complement(504..1517)
                     /locus_tag="ACJFEZ_001279"
     CDS             complement(504..1517)
                     /locus_tag="ACJFEZ_001279"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HGG0917394.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKLKSDSNKEIVE
                     FSFKGPKEIYGKDLNNDQVEVVNTDAYLATINEDAELKFTLIIEKGIGYVPSEEIKEL
                     LNDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSIIKSQATSNELENTKLLQNITDLNLSARSYNCLEKAGIVYI
                     GELALMSVNELAGLKNLGKKSLDEIKSIMESIGFPVGTSKLSDNKDLLKKKIDELKAQ
                     NEG"
     gene            complement(1531..2157)
                     /gene="rpsD"
                     /locus_tag="ACJFEZ_001280"
     CDS             complement(1531..2157)
                     /gene="rpsD"
                     /locus_tag="ACJFEZ_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HGG0917395.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARRDGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSFRVEAGAKIEVIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVIIPVEERFIVELYSK"
     gene            complement(2187..2579)
                     /gene="rpsK"
                     /locus_tag="ACJFEZ_001281"
     CDS             complement(2187..2579)
                     /gene="rpsK"
                     /locus_tag="ACJFEZ_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HGG0917396.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            complement(2589..2954)
                     /gene="rpsM"
                     /locus_tag="ACJFEZ_001282"
     CDS             complement(2589..2954)
                     /gene="rpsM"
                     /locus_tag="ACJFEZ_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HGG0917397.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKTGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            complement(2957..3070)
                     /gene="rpmJ"
                     /locus_tag="ACJFEZ_001283"
     CDS             complement(2957..3070)
                     /gene="rpmJ"
                     /locus_tag="ACJFEZ_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HGG0917398.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            complement(3241..3459)
                     /gene="infA"
                     /locus_tag="ACJFEZ_001284"
     CDS             complement(3241..3459)
                     /gene="infA"
                     /locus_tag="ACJFEZ_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HGG0917399.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            complement(3525..4386)
                     /locus_tag="ACJFEZ_001285"
                     /pseudo
     CDS             complement(3525..4386)
                     /locus_tag="ACJFEZ_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812994.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(4561..5667)
                     /locus_tag="ACJFEZ_001286"
     CDS             complement(4561..5667)
                     /locus_tag="ACJFEZ_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HP0729 family protein"
                     /protein_id="HGG0917400.1"
                     /translation="MQNLLILYNPYYQQDVIKLHLEILLDKGQVAFGKIKSKLKEPLS
                     YERDENKISHNQKLSEIYKNTSADNPLQLFLSDYANLFVAKVVKISKEVDKNIIPKYY
                     QEKNLEVEDYFLITDLRELVRENFTLIRDKFLANFTTENNHTYAIYGNNYSYPLVVKQ
                     KEEINYFYDEINKYYLSVYKNQEYLKMQENFIQFIFGKKFFYMLHPDSINNLILAELE
                     LQQNLENPLYDFTSIIVKYSKTIEYEIYDFAKKIFTKLIKQNSHLSSISYSIQGKEFN
                     FKQFFINKPNLGTIKFLLKNREIQELLDRDVKGFINYEFNKTLDEFQTIRNHAVHAKS
                     PTLEQTLKIRNLILGIENTSILKRVLEYKFKQKG"
     gene            complement(5669..5971)
                     /locus_tag="ACJFEZ_001287"
     CDS             complement(5669..5971)
                     /locus_tag="ACJFEZ_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917401.1"
                     /translation="MFSKILSALSLANSFKAMIFKRLSSPVQSAYLGSLVWDIINILN
                     GDQQDSEKICQILDLLSDFKNKHPEDFDKIVDILKEILDEYEKNPSEVKKNLKELF"
     gene            complement(5971..>7724)
                     /locus_tag="ACJFEZ_001288"
     CDS             complement(5971..>7724)
                     /locus_tag="ACJFEZ_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
                     /protein_id="HGG0917402.1"
                     /translation="NDLEFLRELNDESLDNLVSILIKDENGKTRTTESLTDKDLYKKH
                     YPNHGQYLDLILEELQTFGGNTFANKIRGTGVVYKEILCDVADNLKVKYDKSASIENI
                     EKAILLNSFNKSLENLSESDLKEIAKDFSIDVNTYTIESISNAIAKTNNLKLLYQIAM
                     LVVNAIASKVAINTAIFTTSSLIAGSGLVGSAAISGVLGSTATFLGSRAVGTLAGPIG
                     MIISSAWMINDIAGPAFRVTVPAVIYVAFLRRQFLYEKEMIKQMEAEQKEKVSNLNKG
                     KKYSATELFNQELNILIVGGTGAGKSSTIKALFETEGYNLDIEINSGGKPVTQEIKEY
                     KLGNLTIYDSPGLGDSGENDNEHMKKIKNLLLEKDSKGNAKIDLVLVVVAATVGRDLE
                     STYKTIKEAIMPYMEEKERILIALNKCDKAGADEDIEFDKENNQLTPELEEILEEQVK
                     AIKERIKTDTGVDVDVIYYAAGSTSKKTKIKKPAYNLNKLLAYIVAKAPLKKRLVFLK
                     HQSRNQDDFKYGDNKENYTEEMVKSFIETIKEYAKNVSDFIIEVKNFFTSDKGKEVVG
                     VVKDVFEGFVSIFGKRK"
BASE COUNT         2274 a         1348 c         1001 g         3101 t
ORIGIN      
        1 tattttttaa ataatcattt aagaattttt atttttagaa ttggatttaa aagatgattt
       61 tgaattttta gatttataaa aagttggagt aaattagaaa aatataagaa aaatgaattt
      121 taaaattcca gcttaagctg gaatttttag gctacaaatt caataaaagc catttcagct
      181 gcgtcaccac ggcgaattct tgttttgata attcttgtat agccaccatt tctttctttg
      241 aaatttggag ctatttctgt aacaagttta tttgtagcat ttttatcttg taaagcagca
      301 aaaactgctc tgtgagcgtt aaaatctcca agtcttgctc tagtaatcaa tctttctaca
      361 tagcctctta attctttagc ttttggtaga gttgtttcga ttttaccgct attaactaaa
      421 gctatagtta aattttttaa caaggcagca cgatgagatg aagttctgcc aagttttcta
      481 tatccgtgtt tatgtctcat tctttatcct tcgttttgtg cttttaattc atcgattttt
      541 ttcttaagca aatctttatt atcactaagc ttagaagtac ccacagggaa gcctatgctt
      601 tccataatgc ttttaatttc atctaaagat tttttgccta aatttttaag tccagcaagt
      661 tcattaacgc tcattaaagc aagctctccg atataaacaa ttcctgcttt ttcaaggcaa
      721 ttgtaacttc ttgcacttaa atttagatca gtaatatttt gcaataattt agtattttct
      781 aattcattgc ttgtagcttg actttttatg atgcttctaa catttgtaat cttatcaaat
      841 actgataatt gcttatacat agcttctaaa gcattttgaa aagcttcgtt tggagtgatt
      901 tgtccatcag tagttactgt taaaactact ttttcatagt caggattgtc ttcaaataaa
      961 actttctcaa tatcataagt cgcctctctt acaggagtga aaaaagcatc aagagctatg
     1021 aattttggat catttaaaag ctctttaatc tcttcgcttg gtacataacc aatgcctttt
     1081 tctatgataa gagtaaattt aagttcagca tcttcattga tcgttgctaa atatgcatct
     1141 gtatttacga cttcaacttg atcgttgttt agatctttac cataaatttc tttagggcct
     1201 ttgaaactaa actcaacgat ttctttgttg gaatcgcttt taagtttgaa tcgtaatttt
     1261 ttaagattga tgataaaaag tgctacatct tcaagcatac cacgcatact atcaaattca
     1321 tgcgctacac catcgatatg gatagcggtt ggagcataac ctatagtgct agtataaagt
     1381 aaacggcgta aaggatgggc tagggtaata ccatagccga tctcaaaagg ccaagcactg
     1441 attttagcca cagtatcact aatattttct atagtgaatt ctgtcggcgt ataagcagat
     1501 gttgtaatgt ttctcatgat ttagccccta ttacttagag taaagctcaa cgatgaatct
     1561 ttcctctact ggaatgataa cttcttctct ttcaggtttt ctagtgaaaa ttccaaatct
     1621 tttatctttt tccacatcta cccaagcaac gatacctgtt tgagcagtaa gctcgatcgc
     1681 ccttgtgatt tgaggattat ttttgctttt ttctattact tcgatttttg ctcctgcttc
     1741 tactctaaag ctagggatat ctactctttt tccatttact aaaatgtgtc catgagttac
     1801 aagttgtctt gcaaaacgac gagttgtagc aaagcccatt ctataaacta cattgtcaag
     1861 tctttgctct aaaagttgga taagtaaaac ccctgtattg ccatctcttc tagcagcttc
     1921 tgcaaaaagt cttctgaatt gtttttcact tactccatac ataaatttag ctttttgttt
     1981 ttctcttaat tggagtccgt attcgctgat tttacctttt cttgctccgt gttgtcctgg
     2041 tgcataaggg cgtttatcta atgcgctttt tccggctagt cttctttctc cttttaatgc
     2101 taagctaaca ccaaagcgtc tttctaattt ttctactggt cctctatatc ttgccataat
     2161 taattctcct aattttttct tatatcttag acacgacgac gcttaggcgg tctgcaacca
     2221 ttatgagcta atggagtaat atcttttaag aaagttactt tgattccttc catagcacct
     2281 acacttttaa cagcagtttc tctaccgctt cctggtcctt gtactttaat gcctacttct
     2341 ttgattccgt gttcttttgc tttatttaaa gcgtcttcta ctgcttgttg tgctgcataa
     2401 ggagttgatt ttttagaacc tttaaatcct aaaccgcctg cactgctcca agcgatagca
     2461 tttcccattt catctgtaac agttaccatg gtattgttaa aagttgcact gatataaaca
     2521 ataccttttg ctatattttt tttaactact tttttcttta cgatttttct ttttgccatc
     2581 ttttatcctt atgattttgc accaacagtt tttctcttac cttttctagt tcttgcgttt
     2641 gtttttgttt tttgtccgcg aactggtaag ccttttctgt gtcttaagcc tctaaagctt
     2701 cctaaatcca taagtgcttt tatatccata gcaacttgtt ttcttaaatc cccttcaacc
     2761 atatagtttt cttggatttc ttttctgata gctgctgctt catcttcact tagttcatgc
     2821 actcttttat cataagaaat gcctgtttta tctaagattt ttcttgaagt aaaaagtcct
     2881 ataccataaa tataggtaag tccatactca attctttttt tctttggtaa atccacacct
     2941 gcgatacgag ccatgtttat ccttgtcttt gtttatgttt tggattttcg caaataatgc
     3001 gaactacgcc tttacggcga actactttgc acttgtcgca catcttttta actgatggtc
     3061 tcactttcat gagttctcct taaatgaatt ccacttcatt tacgactgca tcaggtttta
     3121 tgaataacca actattttta aaataagtgg tgaattttaa aaatacctct tcatatagtt
     3181 cgatacattt tgtcgcaaaa acgctaattt tatctaaaat tagcttttaa ataacttata
     3241 ttatttatat ctaaaagtga tacgcccttt atcaaggcta taaggtgtaa gttcaacttt
     3301 aactttatcc cctggcatga ttcttatata gtgcatacgc atttttcctg ctatatgaca
     3361 taaaatcaca tgcttgttgt caagttcaac tttaaaattt gcattaggta atgcttcaag
     3421 cactgtgcca tcgatttcaa tcacatcgtc ttttgccaaa attttctcct ctcattaaaa
     3481 taaaactgtg attatagcaa aaaatatttg aatttattaa gaaattagtt ttccaagtag
     3541 tcttttaaaa tgctatctag tttttctttc agttcaaaag gtttttctat cttcatatag
     3601 agtatccatt gttttactac atttagaagc tcatcatcat aggaaaaata tacttttaga
     3661 gtatagcttt gctcatcttc atcgatgagt tcaaagttgt ttaaaatatt ttttctaaaa
     3721 aaaatactct ttagcctttt tatcaagctt tacgatagct tctttgctat catctagcca
     3781 aatattttta tcatttagaa tttggtctaa aaattcttct ttaggggtaa agatttcatt
     3841 atttttacgg atatttttaa ttttgctaaa agtaaaatgc tttaatttat ccttttcatc
     3901 agctattaaa taccaaattc cttgatagtt taaaagctta taaggtttga cttcgcgact
     3961 tttttcttta tagttaaaat ttaaaatatt gtgttttaaa atcgcaacac taatgatttc
     4021 aaaattttca taatcaactt tttcaaagcc attgtttttg atcataaaaa tgctatttac
     4081 tttagagttt agcagatctg ttataaaatc ctcatctagc tttggataaa gttcttgaat
     4141 cccgcttaac atggcaaaat tttgtatatc tttaacacta agtttgccga gtgcaaaaga
     4201 ttctaaaaaa tactttccat tttctttttt aataggcata aaagaaagcc tttggtttaa
     4261 atctctttgt atggttctaa tatcgacatt aaattcactt gctaattctt ctaggctaaa
     4321 ccttcctcca ttattaaaac gcattaaaat ttgcgctaaa cgcactgcaa gtttatcgtg
     4381 agacatttta aaccttttta attacagaaa taattttact tatcaagctt gtatcttttt
     4441 tgccgctaca tttatcgcag aaaaaatcac ttggatttaa gcaatcactc ttaggagtac
     4501 ataaaaacat ttttccacac tttggacatt ttttaagaaa aggctttggt cttatcattt
     4561 ttatcctttt tgtttgaatt tatactctaa tacgcgtttt aaaatgctag tattttctat
     4621 acctaaaatt aaatttcgaa tttttagtgt ttgttctaaa gtcggtgatt ttgcatgcac
     4681 tgcatgattt cgtatcgttt gaaattcatc taaagtttta ttaaattcat aattaataaa
     4741 tccttttaca tctctgtcta aaagctcttg aatttctcta tttttaagta aaaatttaat
     4801 tgttcctaaa ttaggtttat taatgaaaaa ctgcttaaag ttaaattctt ttccttgtat
     4861 actataactt atggacgaaa gatgagaatt ttgcttgatg agttttgtaa atatcttttt
     4921 ggcaaagtca tatatttcat attctatagt tttagagtat tttactatta ttgaagtgaa
     4981 gtcataaagt ggattttcta agttttgttg caattctagc tctgctagga taaggttatt
     5041 gatactatca ggatgtagca tataaaaaaa ttttttacca aagataaatt gtataaaatt
     5101 ttcttgcatt tttaaatact cttgattttt ataaacgctc aggtagtatt tgtttatctc
     5161 atcataaaaa taattaattt cctctttttg tttgactacc aaaggataag aatagttatt
     5221 gccataaatt gcataagtgt ggttattttc tgttgtgaaa tttgccaaaa atttatctct
     5281 tatgagtgtg aaattttctc ttactaattc tcttaaatct gtgattaaga aataatcctc
     5341 cacttctaaa tttttctctt ggtaatattt tggaatgata tttttatcta cttctttact
     5401 tatttttact acttttgcta caaataaatt tgcataatca ctcaaaaaaa gttgcaaagg
     5461 attatcagca gaggtatttt tgtaaatttc tgatagtttt tgattgtgtg agattttatt
     5521 ttcatccctt tcataagaaa gtggctcttt tagtttagat tttattttac caaatgctac
     5581 ctgacctttg tctaataaaa tttctaaatg caattttata acatcttgtt gatagtaagg
     5641 attatagaga attaagagat tttgcatatt agaaaagttc cttcaaattt ttcttaactt
     5701 cgcttggatt tttttcatac tcatctaaaa tctcttttaa aatatcgaca attttatcaa
     5761 agtcttcagg atgcttgttt ttaaaatcac taagcaaatc taaaatttga caaatttttt
     5821 ctgaatcttg ttgatctcca ttaaggatat ttattatatc ccacaccaaa gaacccaaat
     5881 aggcactttg gacaggactt gataagcgtt taaaaatcat agctttaaaa ctatttgcta
     5941 aagacaaggc agaaaggatt ttagaaaaca ttattttctc ttaccaaaga ttgacacaaa
     6001 tccttcaaaa acatccttaa ctacacccac tacctctttg cctttatctg aagtaaaaaa
     6061 attctttact tctattataa aatcagatac attctttgca tattctttta ttgtttcaat
     6121 aaaagatttt accatttctt ctgtgtaatt ttctttatta tcaccatatt taaaatcatc
     6181 ttgatttctt gattggtgtt ttaagaaaac taatcgcttt ttcaatggtg ccttagcaac
     6241 aatatatgct agaagtttat taagattgta tgctggtttt ttaatttttg tcttttttga
     6301 agtagaacct gctgcataat atattacatc gacatcaacc cctgtatctg ttttaatcct
     6361 ttctttaatt gctttgactt gttcttccaa aatctcttct aactctggag ttaattgatt
     6421 attttcttta tcaaactcaa tgtcttcatc agcgcctgct ttatcacatt tatttaatgc
     6481 aattaaaatc ctttcttttt cttccatata aggcataatt gcttctttta tggttttata
     6541 ggttgactct aaatctctac caactgtggc ggcaacaact actaaaacta gatcaatctt
     6601 agcatttcct ttgctatcct tttccaagag caaatttttt atttttttca tatgctcatt
     6661 atcattttct cctgaatctc ccaatcccgg actatcataa attgttagat tgcctaattt
     6721 atattctttg atttcttgtg taactggttt gccaccacta tttatttcta tatcaagatt
     6781 ataaccttct gtttcaaaaa gagcttttat cgtagagctt tttcctgcac ctgtgccacc
     6841 aactattaaa atattaagct cttgattaaa aagctcagtc gcagaatatt ttttaccttt
     6901 atttaaattg cttacttttt ctttttgttc tgcttccatt tgtttaatca tctccttttc
     6961 gtataaaaat tgtcttctta aaaatgcgac ataaatcact gctggaactg taactctaaa
     7021 agcaggacct gcaatgtcgt ttatcatcca cgcacttgag attatcattc caataggtcc
     7081 tgctaaagtt cctacagctc gtgaacctaa aaatgtcgca gtacttccta atacaccaga
     7141 aattgcagca cttccaacta agccacttcc tgctatcaaa ctacttgttg taaatatagc
     7201 tgtattaatt gcaaccttac ttgctatggc atttacaact aacattgcaa tttgataaag
     7261 taatttaaga ttattagttt ttgcgatagc attagaaata gactctattg tgtaagtgtt
     7321 aacatctata gaaaaatctt ttgcaatttc tttcaaatca ctttctgata aattctctaa
     7381 tgatttatta aaagaattaa gtaaaatcgc tttttctata ttttctatac ttgcactttt
     7441 atcatacttg acttttaaat tatctgcaac atcacataaa atttctttat agacaactcc
     7501 agttcctcta attttatttg caaatgtatt tccaccaaaa gtttgaagtt cttctaaaat
     7561 caagtctaaa tattgaccat gattaggata atgtttttta tacaaatcct tatcggtcaa
     7621 actctctgtt gttctagttt ttccattttc atctttaatt aagatagaca ctagattatc
     7681 taacgattca tcgttaagtt ctcgtaaaaa ttccaaatcg ttgt
//
LOCUS       DBBXRO010000080         7531 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.081, whole genome shotgun sequence.
ACCESSION   DBBXRO010000080 DBBXRO010000000
VERSION     DBBXRO010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7531
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.081"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..444
                     /locus_tag="ACJFEZ_001289"
     CDS             <1..444
                     /locus_tag="ACJFEZ_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917403.1"
                     /translation="FSYENVGSLHCEFLCISGRFLCFFSWIYIVLAFIFMVARIYFLF
                     SSKKILIYFLLAIISLGSSFFLLENKILFLGLLALFFVFYFLFSLTLASLFKEVKMSF
                     YFVFLCMLLAFLFFEKLSFLFFFLALHFLTFAYAFDRYETLKKLY"
     gene            466..1143
                     /locus_tag="ACJFEZ_001290"
     CDS             466..1143
                     /locus_tag="ACJFEZ_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917404.1"
                     /translation="MSNLNFHQMFEIQRQNDFKSIKKLAWVVFISFLLCVCFQFLPII
                     LDFAYDLKLLKFNSNTNILAMVFNAIFLISYLIMILKLYFVSQSKVLLISFFIAAFTQ
                     FIALLSLNYLIASPVVDKILRIFLYGFSFLCLAIAIFCTFIFFKTLKTLCENKIYFKL
                     CFIFKSAILIIIYILMFVLIYSEHSLALIIAYFMIFFFAGLLFTIYYALFAFALSKNQ
                     NIKLSQT"
     gene            1156..1746
                     /locus_tag="ACJFEZ_001291"
     CDS             1156..1746
                     /locus_tag="ACJFEZ_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917405.1"
                     /translation="MKKKIFKFSILFTIFISLSQSALVFIFNHYLIIDYSAYETLPQS
                     FAMLNLADQKLYHLTQNLRFLHSILAFLLIISFFFVHLFFFYISRKEKFIPYSFFCFV
                     LMVISAIANLLEGIEQKESIFWYYKAFLDVGVCLIYLLFLDKFFQSHLFKIFFVCACL
                     CTILTEFKFMDFTTPFVLPIYLFILLILMRKKSFNV"
     gene            1739..2182
                     /locus_tag="ACJFEZ_001292"
     CDS             1739..2182
                     /locus_tag="ACJFEZ_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HGG0917406.1"
                     /translation="MFDFLYNDISYLGLFIVCFLSSTLLPLASEAFVVAFIKLDFNAH
                     LVLFIATLGNTLGSLSTYALAYLGKEKILEKYFSKSLKKLDKFNANFTKFGSLYAFLT
                     FLPLIGDIFALGLGFAKYPFIKACFFISLGKLSRYIFIIFIANSL"
     gene            2246..4885
                     /gene="polA"
                     /locus_tag="ACJFEZ_001293"
     CDS             2246..4885
                     /gene="polA"
                     /locus_tag="ACJFEZ_001293"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HGG0917407.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIIFALDSKGKTFRSDIDPNYKKNRTPPPPELLEQIPICIEMIEKMGFMSA
                     SYEGYEADDIIASVVKTCKDKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEEA
                     CFEKYGVKPYQIKDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRKLLLEGKENAFLSKKLASLYEDLEVSNLLEKADFPQDEPLLKILEILEHYELN
                     VLLKKLRQNSDNKDKNLGFKATLIQDEDKLFEILNSLEQESIIAFDTETTSIDTKEAK
                     IVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSAKKAIELIFKHFIIGHNLKYDFKII
                     ENNFKLSLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDT
                     HALEILMKKFESEIKILSEEIYALCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNELLDKHPVISKILDYRELAKLYSTYCEPLLKLALKDENSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFKNDEDIHARTAIMIFGESNYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAK
                     TYIEKYFENFTSIKSYFEKVKNEAKANGFISTLSGRKRYFDFENAKPMQVAMYERESI
                     NSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEVKDELCENFVKKTSDIME
                     NIVKLKVKLKTSSSIAKKWGDLK"
     gene            4901..5677
                     /gene="motA"
                     /locus_tag="ACJFEZ_001294"
     CDS             4901..5677
                     /gene="motA"
                     /locus_tag="ACJFEZ_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HGG0917408.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVIHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKIVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLRNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIIFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGRKMKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            5680..6411
                     /gene="motB"
                     /locus_tag="ACJFEZ_001295"
     CDS             5680..6411
                     /gene="motB"
                     /locus_tag="ACJFEZ_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HGG0917409.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTATQTVQQETQDTYKYKGSQEEKEDELSKLKQMAVNQQEVIKKL
                     QAALDQSENQEILNLPSKVEFERGSAQIVSADIQDYLKRIAQLISYLPPQIEIEIRGY
                     TDNSDSALRSYDLGYTRAENVLKYLIEGGVSTKNINLKSYGLNSPINGNPQALENNRV
                     QIYFKVDIKDNDAKQSVLDLIEKSK"
     gene            complement(6426..7514)
                     /gene="flhB"
                     /locus_tag="ACJFEZ_001296"
     CDS             complement(6426..7514)
                     /gene="flhB"
                     /locus_tag="ACJFEZ_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HGG0917410.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIVGFVI
                     TLFMMGFIGERITNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLILLAPIVLSIMIAG
                     ILGNVMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKLVESVKIVLKVGVVFTVAFI
                     VLLKFMQELPLVERYNIIGQLIWLRDRAIILAAIVIIAFLVIAVLDIFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTTKEQAPRVVAKGVDFLALRIKQVAYDNNVVVYENPPLARELYKACDINDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKNN"
BASE COUNT         2558 a         1128 c         1148 g         2697 t
ORIGIN      
        1 ttttcttatg aaaatgtggg aagtttacat tgtgaatttc tttgtatcag cggtagattt
       61 ttatgctttt tttcttggat ttatatagtt cttgctttta tttttatggt ggcaagaatt
      121 tattttttat tttcttctaa gaaaatttta atttattttt tgcttgccat tataagcctt
      181 ggctcatctt tttttctttt ggaaaataaa attttatttt tagggctttt agctttattt
      241 ttcgtttttt attttttatt ttcactcact cttgcttcgc tttttaaaga agtgaaaatg
      301 tccttttatt ttgtgttttt atgtatgctt ttagcatttt tattttttga gaaattaagc
      361 tttttatttt tctttcttgc tttacatttt ttaacttttg cttatgcttt tgataggtat
      421 gaaactttaa aaaagctgta ttgagttcaa ttttaaagga aaaaaatgtc aaatttaaac
      481 tttcatcaaa tgtttgaaat tcaaagacaa aatgatttta aaagtatcaa aaagcttgcg
      541 tgggtagttt ttataagttt tttactttgt gtttgttttc agtttttacc cattattctt
      601 gattttgcct atgatttaaa attgttgaaa tttaattcta acactaatat tttagctatg
      661 gtttttaatg caattttttt aatttcttat ttgattatga ttttaaaact ttattttgta
      721 agtcaaagta aggttttatt gatcagtttt tttatagctg catttactca atttatcgct
      781 ttattaagct tgaattatct tattgctagt cctgttgttg ataagatatt acgtattttt
      841 ctatatggct tttctttttt atgtcttgca atagccattt tttgtacttt tatatttttt
      901 aagactttaa aaactttatg tgaaaataag atttatttta aactttgttt tattttcaaa
      961 agtgcgattt tgataattat ctatatactt atgtttgttc taatttatag cgagcattct
     1021 cttgctttaa ttatcgctta ttttatgatt tttttctttg caggcttatt atttaccatt
     1081 tattacgcac tatttgcttt cgcgcttagt aaaaaccaaa atatcaaatt atcccaaact
     1141 taaagcttat atccaatgaa aaagaaaata tttaaattta gtattttatt taccattttt
     1201 ataagtctaa gccagagtgc tttggttttt atttttaatc attatttaat tattgattat
     1261 agtgcttatg aaacactgcc acaaagcttt gcaatgctaa atttagccga tcaaaaactt
     1321 tatcatttaa cgcaaaattt acgcttttta cattctattt tagctttttt attaataata
     1381 tcatttttct ttgtgcattt atttttcttt tatatttcca gaaaagaaaa atttatacct
     1441 tattcctttt tttgttttgt gcttatggta ataagtgcta ttgctaattt acttgaaggt
     1501 atagagcaaa aagaaagtat tttttggtat tacaaggcat ttcttgatgt tggtgtttgt
     1561 ttaatttatc ttttgttttt agataaattt tttcaaagtc acctttttaa aatctttttt
     1621 gtatgtgctt gcttgtgtac aattttaaca gaatttaaat ttatggattt taccacgcct
     1681 tttgttttgc ctatttatct ttttatttta ttgattttaa tgcgtaaaaa gagctttaat
     1741 gtttgatttt ttatataatg atattagcta cttagggctt tttatcgtat gttttctttc
     1801 aagcacgctt ttgcctcttg caagtgaagc ctttgttgta gcttttataa aacttgattt
     1861 taatgctcat ttggttttat ttatagctac tttaggcaat accctaggaa gcttaagcac
     1921 ctatgctcta gcctatcttg gcaaagaaaa aattttagaa aaatattttt ccaaatcttt
     1981 aaaaaagctt gataaattca atgcaaattt tactaaattt ggaagtcttt atgctttttt
     2041 aaccttttta cccttaatag gcgatatctt tgctttaggc cttggttttg caaaataccc
     2101 tttcatcaaa gcttgttttt tcataagtct tggcaaatta agccgctata tttttataat
     2161 ttttatcgct aattctttat aaaaatcatc aatctttaaa gtgaattttg agataataat
     2221 ttaaaaccca ctaagaaaga caaccatgaa aactttaact attatcgata cttttggctt
     2281 cttttttcgt ctttattatg cactcaaagg atttaaaaat tctcaaggac aagctagtgg
     2341 aatgattagc ggttttgcta attttatcta tagtcttaaa aacgaatata aaagcgatta
     2401 tattattttt gcactagatt ctaagggcaa gacatttcgt agcgatattg atccaaatta
     2461 taaaaaaaat cgcaccccgc ccccacccga acttttggaa caaattccaa tttgtataga
     2521 aatgatagaa aaaatgggct ttatgagtgc ctcttacgag ggttatgagg cagatgatat
     2581 catcgcttca gtggttaaaa cttgtaaaga taaagatatt tttgtacgca ttataacaca
     2641 ggataaagat ctttatcagc ttataaaaga tggtaaaaca agtatttata gccctatttc
     2701 aaaaaatgac tatgatgaag aagcttgctt tgagaaatac ggtgtcaaac cttatcaaat
     2761 taaagatttt ttagccttat gtggagatag ctcggataat atcccaggag ttaaaggcat
     2821 aggagcaaaa ggtgctaaaa cattgcttga tgagtttgga agtatcgaag gcatttatga
     2881 aaatttgact ctagtacgca atgaaagaag tcgtaaattg cttctagaag gtaaagaaaa
     2941 tgcttttctt agtaaaaaac ttgcttcttt gtatgaggat ttagaagtaa gcaacttgtt
     3001 agaaaaagct gattttcctc aagatgagcc tcttttaaaa attcttgaaa ttttagagca
     3061 ttatgaactc aatgtcttac ttaaaaaact tcgccaaaac tccgataata aagataaaaa
     3121 tttaggcttt aaagccactc tcatccaaga tgaagacaaa ctctttgaaa ttttaaattc
     3181 tcttgaacaa gaaagtatca tagcttttga tactgaaacc acaagcattg ataccaaaga
     3241 agcaaaaatt gtaggattta gtttttgtat gagtgaaaat gaagcctttt atgtacctct
     3301 tactcataat tatttaggtg tgggtaagca agtatcatta caaagcgcta aaaaagctat
     3361 agagcttatt tttaaacatt ttatcatagg gcataatctt aaatatgatt ttaaaatcat
     3421 agaaaataat tttaaactct ctttgccgca aaaatatgct gatactatga ttttagcatg
     3481 gcttaaaaac ccttccttaa gagtcaatat ggatgatttg gctctaagac tttttaatta
     3541 tgaaacctta cattttgaaa gtcttgtaaa aaaaggagaa aattttgcaa gcgtagagct
     3601 tgaaaaagct tgcaagtatg cagctgaaga tgcttatatc actttaagat tttatcttta
     3661 ttttttaaaa aatcttgaac ctcatttgct tgatcttgct aaaaattatg aatttgattt
     3721 tattaaaatt attatgatga tggaagaaaa tggcataaaa ctcgatacgc atgctcttga
     3781 aattctcatg aaaaaatttg aatctgaaat taaaatttta agcgaagaaa tctatgcttt
     3841 atgtgaagat agattcaatc ttaattcccc aaaacaagta ggcgatatac tttttgaaaa
     3901 actcaagctt ccaagtggaa aaaaaggtaa gacagggtat tctaccgatg aaaaagtctt
     3961 aaatgagctt ctcgataaac atcctgttat ttctaaaatt ttagattata gagaactggc
     4021 caagctttat tcgacttatt gcgagccctt gttaaaactt gctttaaaag atgaaaattc
     4081 aagaatttat tcgagctttt tacaaacagg tactgctaca ggccgtcttt catctaaaga
     4141 tcccaattta caaaatatcc ccgcgcatgg acaatatgca aaagattata aatcctgctt
     4201 tatagccaaa gagggattta gttttatcag ccttgattat tctcaaatcg aacttagaat
     4261 gctagcgcac tttagcgaag atgaaaaact tttaaatgct tttaaaaacg atgaggatat
     4321 acatgcaaga accgctataa tgatatttgg cgagagtaat tatgaaacaa gaagtatagc
     4381 aaaaagtatt aattttggct tgatttatgg tatgggttat aaaaccttaa gcaaaaatct
     4441 aaaaattgaa gccaacttag ctaaaaccta tatagaaaaa tattttgaaa attttactag
     4501 cattaaaagt tatttcgaaa aagtaaaaaa tgaagccaag gctaatggtt ttattagcac
     4561 cttaagcgga cgtaaacgct attttgactt tgaaaatgct aagcccatgc aagtggctat
     4621 gtatgaaaga gagagtataa attcgatttt acaaggatca gctgcagata ttataaaatt
     4681 tgccatgcta gaaattgcta aaattttaaa tcaagataaa aggcttatct tgcaaattca
     4741 cgatgaactt atctttgaag ttaaagatga attatgtgaa aattttgtga aaaaaactag
     4801 tgatattatg gaaaatatag taaaattaaa ggtaaaatta aaaacaagct caagtatcgc
     4861 caaaaaatgg ggcgatttaa aataatcaag gagtgattta atggatcttt caaccatatt
     4921 aggaatggtt cttgcagtaa ctagtatctc agtaggagat atactcgagg gaggaaatcc
     4981 tctgcatgtt atccaccttt cttcttttct aatcgttatg ccaacggcag ctttttgtgc
     5041 catgacttca actcataaaa aaattgtaaa agcagcctat aaagaactta aaatcgtttt
     5101 taaaggttca ggtgtaaatc tacctgaaag aatagctcag cttatcgaat tcgcaattat
     5161 tgcacgccga gatggtcttt tggctttaga atcaagaaca aatgaaattg aaaatgaatt
     5221 tttaagaaat gctatgatga tgctagtaga tggaaaaagt tttgaagaaa ttcatgaaag
     5281 tatggaaatt caaaccgaac aacttgaaga acactataaa gaatgtgcag aatactggat
     5341 aatctttggt gaaacttgtc ctactatggg acttgttgga gcggtttttg ggttgatttt
     5401 agcactgaaa cttctagata atcctcaagc aatggcagca ggtatttcag gtgcttttac
     5461 agctacagtt acgggaattt ttggcgctta tgcacttttt gctccttggg gaagaaagat
     5521 gaaagctaat ggtatggatc ttgtaaaaga gcaaattgtc attactgaag ctataaaagg
     5581 aattgcagaa ggtgctaatc ctagagattt agaagctaaa ctttttaact tcttaagtca
     5641 tgacgatcca agaatttcac aatttgacaa aggttaaaaa tggctaaaaa acacaaatgt
     5701 ccagaatgtc cagcaggtga aaaatgggct gtgccttatg cagactttct aagtttgctt
     5761 ttggcgcttt ttattgctct ttgggcaatt tctaaaacaa atccagctaa agtagaagca
     5821 ctgaaaaccg aatttgtaaa aatctttgat tatactgcaa cccaaaccgt gcaacaagaa
     5881 acacaagata cttataaata taagggttct caagaagaaa aagaagatga attgagcaaa
     5941 cttaaacaaa tggccgtaaa tcaacaagaa gttattaaaa aacttcaagc cgctcttgat
     6001 caatccgaaa atcaagaaat acttaaccta ccttccaagg ttgaatttga aagaggaagt
     6061 gcacaaatag tatctgcaga tattcaagat tatcttaaac gcattgctca gcttatttca
     6121 tacttacctc ctcaaataga aattgaaatc agaggttata ctgacaatag tgactcagcc
     6181 ttaagaagct atgatctagg ctatacaaga gcagaaaatg ttttaaaata tcttatagaa
     6241 ggcggagtta gcaccaaaaa tataaacctt aaaagctatg gattaaatag tcccatcaat
     6301 ggaaatccac aagctttaga aaacaataga gtgcaaattt attttaaagt agatattaag
     6361 gataatgacg caaaacaatc agtgcttgat cttatagaaa aaagcaaata ataaaattta
     6421 tttgcttaat tatttttctt gacctgtcct gctaaacgac ttttattatt agtattgtaa
     6481 acaaatccaa gtacctctgc tacagcttta aacatttctc taggaataag atcattaata
     6541 tcacaagcct tataaagctc tctcgctaaa ggcggatttt cataaacaac tacattatta
     6601 tcataagcaa cctgttttat acgaagtgcc aaaaaatcta ctcctttagc cacaactcta
     6661 ggagcttgtt cttttgttgt atcataacga atcgctacag cataatgcgt cgggtttgta
     6721 ataaccacat ccgcccctgc aacatcttga accatacggc ggcgtgctgc ttccatttgt
     6781 aagcgacgaa tcctcccttt tacctgagga tctccctcca tttgcttgta ttcatcttta
     6841 atttcttgct tgctcattcg caagccttta aaatactgaa aacgcaccaa aaaaatatcc
     6901 aaaacagcaa tcactaaaaa tgctatgatt acaatagctg ccaaaataat agccctatcc
     6961 ctaagccaaa tgagttgtcc aatgatatta taacgctcaa ccaaaggtaa ttcttgcata
     7021 aattttaaaa gcactataaa agctacagta aatactacgc ctaccttaag cacgatctta
     7081 acactctcga caagcttttt taaagaaaat aaatttttta agccttttaa tggattgatt
     7141 tttcctaaat taggcattat aggtttggtc gtaaaaataa aaccaaactg cataacatta
     7201 cctaaaatac ctgcgatcat aatactcaaa actataggtg ctagcaaaat caaaacttca
     7261 aaaatgcttt taatcataat ggcttggata atacgcaaat caaattcaac acctataaaa
     7321 ctttgataat atctatatag attagtaatt ctttcaccga taaaacccat cataaaaagt
     7381 gtaatcacaa aaccaactat taaagtaaca atagctgctg cgtcttggga tttggggaca
     7441 ttgccttctt ttcttgcgtc ttctattttc ttggacgtgg gttcttcagt tttttcttga
     7501 tcttcgcctg ccataattag cctaaattta a
//
LOCUS       DBBXRO010000081         7511 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.082, whole genome shotgun sequence.
ACCESSION   DBBXRO010000081 DBBXRO010000000
VERSION     DBBXRO010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7511
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.082"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            14..1135
                     /locus_tag="ACJFEZ_001297"
     CDS             14..1135
                     /locus_tag="ACJFEZ_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HGG0917411.1"
                     /translation="MIYCDHCVMPNTRPGINFTKDKEGKNICSACINHKNKENIDYKA
                     RFKELEVLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENL
                     QLFFNPNKDKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            1153..1828
                     /locus_tag="ACJFEZ_001298"
                     /pseudo
     CDS             1153..1828
                     /locus_tag="ACJFEZ_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            1868..2872
                     /gene="legI"
                     /locus_tag="ACJFEZ_001299"
     CDS             1868..2872
                     /gene="legI"
                     /locus_tag="ACJFEZ_001299"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HGG0917412.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNALCK
                     NGTKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTQGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPHELKTLCTQIRQIQKAMGDGIKKASKSERKNI
                     NIVRKSLVAKKDIQKGEIFNEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELICE
                     "
     gene            2865..4019
                     /gene="legG"
                     /locus_tag="ACJFEZ_001300"
     CDS             2865..4019
                     /gene="legG"
                     /locus_tag="ACJFEZ_001300"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HGG0917413.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQDYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDCEINDLDQA
                     FEKLESKEFKQILKNFKNPYDNDKNPNKFIKTCLKNVNLDTILHKNFIDL"
     gene            4028..5053
                     /locus_tag="ACJFEZ_001301"
     CDS             4028..5053
                     /locus_tag="ACJFEZ_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HGG0917414.1"
                     /translation="MDINKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEELLRISAKTDIYDFPVLDEKGQI
                     LSIKSVSSLLKTNPNSIVIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFLV
                     MNADILTELDFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            5050..5955
                     /gene="ptmF"
                     /locus_tag="ACJFEZ_001302"
     CDS             5050..5955
                     /gene="ptmF"
                     /locus_tag="ACJFEZ_001302"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HGG0917415.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLNHEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKTLDDLVKDKTILVEKPLFEKSQNFTSLKNH
                     IYVAYLLRFHPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFGNLELIYSQNAKISELDITSDDFAFLVLKNSQKAKIHIELDYF
                     SKFNKREMTIHTLEKSFKADLINNKIEIYHKDQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLEICDEVRKKNG"
     gene            5948..6655
                     /gene="legF"
                     /locus_tag="ACJFEZ_001303"
                     /gene_synonym="ptmB"
     CDS             5948..6655
                     /gene="legF"
                     /locus_tag="ACJFEZ_001303"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HGG0917416.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDQAAKLPVMRDALLRSEEHFKTRFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGEKTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            6655..7425
                     /gene="ptmA"
                     /locus_tag="ACJFEZ_001304"
     CDS             6655..7425
                     /gene="ptmA"
                     /locus_tag="ACJFEZ_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HGG0917417.1"
                     /translation="MLENKIIFVAGACGRIGKALCQKILLSKGIPILADINKERLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGHGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            7413..>7511
                     /locus_tag="ACJFEZ_001305"
     CDS             7413..>7511
                     /locus_tag="ACJFEZ_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917418.1"
                     /translation="MGLMMTFTPTQKELFNKNIEALSNILLKESLKE"
BASE COUNT         2907 a         1092 c         1247 g         2265 t
ORIGIN      
        1 gaaggggtgg ggaatgattt attgtgatca ctgcgtgatg ccaaatacta gacctggtat
       61 taattttaca aaagataaag aaggtaaaaa tatctgttca gcttgcatca atcataaaaa
      121 taaagaaaat attgattata aagcaaggtt taaagagctt gaagtcttat gcgataaata
      181 ccgcagaatg aatggaaaat ttgaatatga ttgtgctatt gccgtaagtg gaggtaaaga
      241 ttcgcatttt caagtgcata tcatgaaaga aaaacttgga atgaatccta ttctttttag
      301 cgttgaagat aatttcacca tgactgaagc aggcaagaaa aatcttaaaa atttaagtga
      361 aacttttggt tgtcatatca ttagcttaaa gcctgatatc aaaactcaaa aaaaagttat
      421 gctaaaaacc tttgaaaaat atggaaaacc tacttggttt attgatagac taatttacag
      481 ctatcctttt gctatggctt taaaatttaa tacaccttta ttggtttatg gagaaaatgt
      541 tagttatgaa tatggaggta gtgataccga agaaactcct agcgctaaag aaatattttt
      601 aaatggtgta gctagtgatt taaatataaa tgaatttata gatgatgaaa tcaaagaaga
      661 aaatttgcaa ctctttttca atccaaacaa agataaactc gataaactta accctatcta
      721 tctaagttat tttgtaaaat ggaattctta tagcaattat atttttgcta aaagtcgtgg
      781 ttttactgat ctagaaggcg aatgggatag aacaatgtgt gcagaaaatt ttgatcaagt
      841 tgatagtata ggctatatcc tacacgcttg gatgaaatac cctaaatttg gtcatgcttg
      901 tgcgagtgat tacgcagctc gtttcgtgcg ttatggactt ttaagcagaa aagaagctat
      961 tgaacttgtg caaaaaagag atcataagct tgacaataaa tgcgttgaag atttttgcaa
     1021 tttcataggt attagtaaaa ctacattttg gaaaatagta gaaaaacatt acaatatgga
     1081 tttattttat aaaaatgatt ttggagaatt taaattaaaa aacaaattac aataaaaata
     1141 taaaggaaaa aaatgcaaaa ctcattagaa gcttatacaa tgaaatataa tgaaaatgga
     1201 tacggattac tttttccaga tggtcatgta gtacgttttt atgaaagaat tttaaaatac
     1261 aaactaaata aaataaatgg aaatttactt gattttggtt gtggcaatgg tgtacattca
     1321 gcgtattttc aaagcaaagg gtttaaaact tttggaatag atatagttcc aagtttaaaa
     1381 gaaatttggg agcaaaatat tagcgggggg ggggtattgt aaaattatag aaccaaattc
     1441 tagcatcaaa ggactttttg atgaaaatat ggatattatc tttgcaaatc aaagtcttta
     1501 ctacatacct ctaaaagaac ttaaacaaaa tattttagaa ttttacgaac ttttgaacac
     1561 aggtggaata ctttttgcta caatgatgag caagaaaaat tattattttt cccacagtca
     1621 aaaagaagaa aaaaatggct tgagtaaagt tgaaattaat ggaagattaa atgaaacaag
     1681 ctttatacat ttcatcgata aagccgaaga tctagaaaat ctttttcaac cttttgaaac
     1741 tttatttcta ggagattatg atcctattaa tttttataat tttgaaggat cggcacacca
     1801 ttatatttat ataggtatta aaaaataaaa ttttgccttt attttaaggc aaaataaagg
     1861 caaaactatg aaaaaaactt taatcatcgc agaagcagga gtcaatcaca atggtgattt
     1921 aaatttagct aaaaagttaa tagaaatcgc agcagattca ggggctgatt ttgttaaatt
     1981 tcaaagtttt aaagccaaaa actgtatcag cacaaaagct aaaaaagcac cctatcagct
     2041 taaaaccacg gctagtgatg agagtcagct tcaaatggta caaaaactcg aactcgatct
     2101 taaagctcat aaagagctta tcttacacgc aaaaaaatgc aatatcgcct ttctttctac
     2161 tccttttgat cttgaaagtg tagatctttt aaatgagtta ggcttaaaaa tctttaaaat
     2221 tccaagcgga gaaatcacca atctacccta tcttaaaaaa attgcaaagc ttaataaaaa
     2281 aatcatactt tcaacaggta tggcaaattt aggcgagata gaagaagctt taaatgcgct
     2341 ttgcaaaaac ggtactaaac gccaaaatat cactctttta cactgtacta cagaataccc
     2401 tgcccctttt gatgaagtca atcttaaagc catgcaaagc ttaaaagacg cttttaagct
     2461 tgatgtgggt tattctgatc acactcaagg catacacatt tctctagctg cagttgcctt
     2521 gggagcttgt gtaatagaaa agcattttac tctagacaaa aatatgtcag ggcctgatca
     2581 taaagcaagc ctagaacctc atgaactaaa aacgctttgt actcaaataa gacaaataca
     2641 aaaggctatg ggtgatggca taaaaaaagc aagcaaaagc gaaagaaaaa atatcaacat
     2701 agtaagaaaa agtttagtcg ctaaaaaaga tatccaaaaa ggagaaattt ttaacgaaga
     2761 aaatcttact accaaacgcc cagcaaatgg tataagtgct atgagatatg aagagttttt
     2821 aggtaaaatt gctacaaaaa actacaaaga agatgagctt atctgtgagt aaaagaaaaa
     2881 tttgtatagt cagtgcaaca agggctgaat ggtatctttt aagaaattta tgtcatgaaa
     2941 ttcaaaacga taaagatcta agccttcaaa tcatcgctac aggagcgcat ttaagccctg
     3001 agtttggact cacttataaa gaaatagaaa aagaatttaa aatcactaag aaaattccta
     3061 tcctacttgc aaatgatgat aaaataagcc tttgcaaaag catgagttta gcttttagtg
     3121 cttttagcga tgcttttgaa gacttaaaac ctgatatggt ggtgatttta ggcgatcgtt
     3181 atgaaatgct tagcgtagca agtgtatgtc ttttgatgca cataccttta gtgcatttat
     3241 gtggcgggga gcttacttta ggggctattg atgatagtat aagacacagc atttcaaaaa
     3301 tgtcacattt acattttgta agtcatgaaa tttataaaaa aaggcttttg caacttggag
     3361 aagaagaaaa aagggttttt aatataggtt ctttagcttc tactatcata aaaaatatga
     3421 attttttaaa caaaaaagat ttagaaaaag ccttagaaat gaaactagat aaagaacttt
     3481 acttaatcac ttatcatcct ttaaccttaa atgtaaaaaa tactcaaaaa gagattaaaa
     3541 ccttacttaa aaaacttgac acccttaaaa acgcaagttt gatttttacc aaagcaaatg
     3601 ccgatgaaaa cggactttta atcaatgaaa ttttgcaaga ttattgccaa aaaaactcac
     3661 acaaggctaa actttttgat aatcttggct cacaaaaata cctaagtctt atgaaaatag
     3721 ccaaggccat gataggcaat tcttcaagtg gtattagtga aagtcctttt tttaaaactc
     3781 cttgcattaa tataggcgat agacaaaaag ggcgtttaag aactcaaaat atcattgatt
     3841 gtgaaattaa tgatcttgat caagcttttg aaaaattaga aagcaaagaa tttaaacaaa
     3901 ttttaaaaaa ttttaaaaac ccttatgata atgataaaaa tcccaataaa ttcataaaaa
     3961 cttgcctaaa aaatgtaaat ttagatacaa ttttacataa aaatttcatc gatttataag
     4021 gcttagtgtg gatataaaca aactcaaact cacccctgat tctagcataa aagaagcttt
     4081 aaaaatagtc gggcaagagc gcgttagatt aggcattata gttgataaaa aggataaatt
     4141 tttaggagtc attagcgatt caaacatcag aaaagcttta attagtggca aaactttaaa
     4201 agatagcatc aaagatattt acactaaaaa tcccatcacc ataaaagaaa atacaagcaa
     4261 agaagaactt ttaagaattt ctgctaaaac cgatatttac gactttcctg ttttagatga
     4321 aaaagggcaa attctttcca taaaatctgt ctcatcgctt ttaaaaacca atccaaactc
     4381 cattgtcatc atggctggag gcttaggatc tcgcttaaaa gagctgacta aagatactcc
     4441 aaaacctatg ttaaaagtag gcaaaaaacc cattttagaa agcataatcc aaagacttaa
     4501 aaatcaaaat tttgaaaatt ttatcttttg tgtgaattat aaaaaacaaa tcatagaaga
     4561 ttattttcaa aaagggcaaa aatttggggt taaaatttct tatattaaag agcgtaaaaa
     4621 actaggcaca gcaggagctt taagccttat aaaacaagaa tttaaagaaa gttttctcgt
     4681 tatgaatgca gacattttaa ccgagcttga ttttaatgat cttttaaaag cccataaaaa
     4741 atcaaaagct ttaatgagcg tttgcgtgcg tgagtttgag caacaaattc cttatggagt
     4801 aatcacccaa aaacaaggtt ttatagaaaa tatagaagaa aaacctaccc aaaaattcct
     4861 agtaagtgcg gggatttatg tacttgaaaa tgaaatttta aatttaattg ctaaaaatga
     4921 atacttagac atgccagaac tcatcaaact tgtattgcaa aaaggcaaag taaacaccta
     4981 tatcatcaac gattattgga ttgacattgg aaggccagat gagtttttaa aagccaatga
     5041 ggattttaaa tgaaagtctt aatcataggt tttggaagca taggaaaaaa gcatttttta
     5101 gccttaaaaa atttaaatca tgaagtaagt ttgctttctt taagtgctaa aaaagaagaa
     5161 tttaaaaaca ctccaattta tcgctctttg aaagaatgtg atttaaacga atttgatctt
     5221 tttatcatcg caaatatcac tacggagcat tttaacacct taaaaacttt agatgatctt
     5281 gtaaaagata aaaccatact cgtagaaaaa cctttatttg aaaaaagcca aaatttcaca
     5341 agtttaaaaa atcacattta tgtagcatat ttactgcgtt ttcatcctgt gattgtcgct
     5401 ttaaaaaggc ttttaaaagg tgaaaaaatt tattttgcta gtttggtttg taattcttat
     5461 ttgccccatt ggagagcttt agactacagg caaaattaca gcgctaaaaa agagctaggt
     5521 ggtggggttt tactcgatct ttctcatgaa atcgatctag ccttttttct ttttggaaac
     5581 ttagagctta tatactccca aaatgctaaa atttcagagc ttgacataac aagcgatgat
     5641 tttgcctttt tggttttaaa aaattcacaa aaagctaaaa ttcatataga attagactat
     5701 ttttctaaat tcaacaaaag agaaatgacc atccatactt tagaaaaaag ctttaaagcc
     5761 gatttaataa acaataaaat cgaaatttat cacaaagatc aaagtcaaaa aatcttaaat
     5821 tttgaaaatg atacgataaa aacccttcaa aatttacatc atgcagtctt tgaaaaagac
     5881 aaagaacttt gcgatcttaa gcaggcttta aaagtgcttg aaatttgtga tgaagtaagg
     5941 aaaaaaaatg gctgaaattt tatgtaccat ttgtgctagg ggtggtagca aaggcgttaa
     6001 aaacaaaaat attagaaaga ttaacgaact tgaaatgata gcttatagca tcatacaagc
     6061 tcaaaattca aagcttttta aacacatagt cataagtact gatagtgatg aaatcgcaag
     6121 tgtagcccaa aaatatggcg ctgaagtttt tttcaaaaga gaagcccatc ttgccaatga
     6181 tcaggctgca aaacttcctg tcatgcgcga tgccttacta agaagtgaag agcattttaa
     6241 aacgcgtttt gaaactctca tagacttaga tgcttcagcc ccgcttcgct caagccttga
     6301 tataaaaaaa gcttatgaaa gttttgttga aaatgataat tccaatctca tcaccgcagt
     6361 tcctgctaga cgcaatcctt attttaacct cgtagaaata caaaataaca aggtagtaaa
     6421 atccaaagaa ggaaatttta ccactcgcca aagtgcccca aaatgctacg atatgaacgc
     6481 tagtatttat atctttaaaa gggattatct tttagaaaat gatagtgttt ttggagaaaa
     6541 aacagggctt tttgtaatgg atgaaagcac ggcttttgat attgatagcg agcttgattt
     6601 taaaatcgta gagtttttaa tctctttaaa aaatttatcg ccaaaggatt tttaatgctt
     6661 gaaaataaaa tcatctttgt agcaggagct tgtgggcgta taggtaaagc gctttgtcaa
     6721 aaaatacttc ttagcaaagg tatccctata ctcgcagata tcaacaaaga acgcttaaat
     6781 aaattgcaag aaaatttaga aacaaatttt aaaacaaaac ttttaagctt agaacttgat
     6841 atcactaaac aagaaagctt acaaaccgcc cttcaaaaaa gtcaagaaag atacggcaaa
     6901 atcgatgctt ttgttaactc aagctatcct tttggcaaag attggggtaa aacgccttat
     6961 tatgaactca aatacgaaca aatttgtgaa agtttaaatt tacatttagc aggctttatg
     7021 ctagccgctc aagaatttgt gaaatttttt aaacaacaag gccatggtaa tatcatcaat
     7081 cttagctcca tcatgggagt ttatgcgcca aaatttgaaa actatgaagg cacttccatg
     7141 caaagctctt tagaatacag tgtgataaaa gcagggatta atcacatgag ctcttggcta
     7201 gctaaagagc tttttaatca aaacatacgc gttaataccc tagcaagtgg aggaattttg
     7261 gataatcaaa atgaactttt tttaaaagct tatagaaaat gttgtgcaag caagggtatg
     7321 ttagatgctg atgatgtgtg cggaactttg gtatttttgc ttagtgatga gagtagattt
     7381 atcacagggc aaaccttagt ggtagatgat ggatggggct tatgatgacc ttcaccccta
     7441 ctcaaaaaga actctttaat aaaaacattg aggctttaag taatattctt ttaaaagaaa
     7501 gtttaaaaga a
//
LOCUS       DBBXRO010000082         7510 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.083, whole genome shotgun sequence.
ACCESSION   DBBXRO010000082 DBBXRO010000000
VERSION     DBBXRO010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7510
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.083"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            93..1274
                     /locus_tag="ACJFEZ_001306"
     CDS             93..1274
                     /locus_tag="ACJFEZ_001306"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HGG0917419.1"
                     /translation="MKVYLDNNATTMLDPSAYELMLPFLKDMYGNPNSLHQWGSATHP
                     ALREAMDKLYAGLGANDLDDIVITSCATESINWVLKGIYFDHILDKERNEVIISSVEH
                     PAVAAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IQKMAEIAHEFGALFHTDATQAVGKIKVNLNQVGVDFASFSAHKFHGPKGVGGLFIKR
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAENDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1284..2255
                     /locus_tag="ACJFEZ_001307"
     CDS             1284..2255
                     /locus_tag="ACJFEZ_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HGG0917420.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPEIPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHTVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2278..4161)
                     /locus_tag="ACJFEZ_001308"
     CDS             complement(2278..4161)
                     /locus_tag="ACJFEZ_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HGG0917421.1"
                     /translation="MKKIIILFLLGISCLWGDEFRLIDTNASAQDKSVYSLVQKYIDL
                     NRQIKEFKKNNDENSSSYDGILSEFEKDKKSILSKIPDMIVKQQINEKAVESFLKTRQ
                     NLLDLQKKSINKPYVYVDTTLNIMYLDVVKSFYSSLFELERLFKNAANSESIISTVDK
                     AMENLQNSTNIDLSIYKAKINNPSELEKISNKEEMIFNAVDAYVEILKYLRANADLLE
                     SNYIFSLLELQVWIDRINEMANIDFINTGKIVISILVLVFFMSLRRFFSNIVYFILVR
                     LVYHNKSDADDIKVIFIDNIKKPVGFLLICYAISLCLTIATYPAPLSINLSNLFHIVY
                     AVLIAWLILRILDGYGVVLVSKLAQKSGKKEVVNLVIKILYFVIFVIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(4158..4793)
                     /locus_tag="ACJFEZ_001309"
     CDS             complement(4158..4793)
                     /locus_tag="ACJFEZ_001309"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HGG0917422.1"
                     /translation="MDNLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGQDYLATTSAIEYALNSLRIKNIVVCGHSN
                     CGGCNALYYSDEELDKIPNVKKWLTMLDPIKRDVTIFARDDIAMRSWLTEKLNLVNSL
                     QNIFTYPGVQEALDEGRLEVHAWYYIIETGEIYEYDFKTKIFKLIQNRKMQ"
     gene            4952..5647
                     /locus_tag="ACJFEZ_001310"
     CDS             4952..5647
                     /locus_tag="ACJFEZ_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HGG0917423.1"
                     /translation="MSLYDRDYSRSREFENTRSSELGIFIKQTYQLFAASLLAATVGA
                     YVGIYALAAFFIQSQVTFWILFAVEIGLLIALQFKKREAPLNLILLFGFTFCSGLTLT
                     PLLISVLALPAGGVIIAQAFALTTVAFAALSIFAMNTKKDFTLMGKALFIVLIVVVAA
                     SLLNIFFQSSLLNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            5754..6110
                     /gene="secG"
                     /locus_tag="ACJFEZ_001311"
     CDS             5754..6110
                     /gene="secG"
                     /locus_tag="ACJFEZ_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HGG0917424.1"
                     /translation="MITLLTILQFVIVVIICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFIMGILLIANTIGLGYLYNSTSKDSLAEKIKIETNTSIPTAPNAINVP
                     AIPSAPQIPNESNTSK"
     gene            6127..6684
                     /gene="frr"
                     /locus_tag="ACJFEZ_001312"
     CDS             6127..6684
                     /gene="frr"
                     /locus_tag="ACJFEZ_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HGG0917425.1"
                     /translation="MINEILNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHIQVDY
                     YGSLTPLNQVATVLASDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFF
                     PPMTREQREENVKQAKAMGEKAKVSVRNIRKDANDAVKKLEKDKAISEDEAKKAYDEV
                     QKLTDTYTAKIDESVKNKESELLKV"
     gene            6687..7295
                     /gene="pyrE"
                     /locus_tag="ACJFEZ_001313"
     CDS             6687..7295
                     /gene="pyrE"
                     /locus_tag="ACJFEZ_001313"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HGG0917426.1"
                     /translation="MDLEQIYKDCGAYLQGHFLLSSGKHSEFYLQSAKVLENPKLAAR
                     LCDELAKIIAEFNIEFDSICSPALGGILAGYELARACDKRFIFTERVNGEMTLRRGFE
                     VKEGERFIICEDIITTGGSALESAKIIESLGGKVLGFAALANRGFCAVENLKNPKKPS
                     AKLPDNLPLFTLGNFDFQIYDENDCPFCKEGSKAIKPGSRGN"
     gene            7296..>7510
                     /locus_tag="ACJFEZ_001314"
     CDS             7296..>7510
                     /locus_tag="ACJFEZ_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HGG0917427.1"
                     /translation="MKTKAKIASRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NSYITALCTFLFGFIQALFLASKAQSPG"
BASE COUNT         2656 a         1180 c         1238 g         2436 t
ORIGIN      
        1 ataattttta aactagaatt tatatttttc tgttattatc cattttcata aaaagataaa
       61 aaatatccga attaaaattt aaggaaatta aagtgaaagt atatttagat aataatgcaa
      121 caacgatgct tgatccaagc gcatacgaat taatgttgcc atttttaaaa gacatgtatg
      181 gaaatccaaa cagtcttcac caatggggca gtgcaactca tcctgcccta agagaagcta
      241 tggataaact ttatgcggga cttggcgcaa atgatttaga tgatatagtt ataacatcct
      301 gtgctactga aagtatcaac tgggtgctta agggtatata ttttgatcat attttagata
      361 aagaacgcaa tgaagtgatt atctctagcg tagaacaccc tgctgttgct gctgctgctt
      421 attttttaaa aagtcttgga gtaaaagtca tagaacttcc tgtaaatgaa gaaggagttt
      481 ctactgtaga agatttgcgt aaagtgatta gcgataaaac agcacttgta agtgttatgt
      541 gggctaataa tgaaacagga atgatttttg atattcaaaa aatggcagaa attgctcatg
      601 aatttggagc gctttttcat acagatgcta cccaagcagt aggaaaaatc aaagtaaatt
      661 taaaccaagt aggagttgat tttgcttcat tttcagctca taaattccat ggaccaaaag
      721 gtgtaggtgg actttttata aaaagaggac ttaagcttac tccactttta cacggtggag
      781 aacacatggg tggtcgtaga agcgggactt taaatgtgcc ttatatagtg gctatgggcg
      841 aggctttgcg tattgcaaat actatgcttg attttgaaga ttctcatata cgccgtttaa
      901 gagataaact agaagatcaa attttagcct tgcctgatac aacagtggtt ggaaaaagag
      961 aacaccgtgt gcctaataca atcttagcaa gtattaaagg agttgaaggc gaagcaatgc
     1021 tttgggattt aaataaaaat ggtatagctg caagtacggg ctcagcctgt gcaagtgaag
     1081 ctttagaaag caatcctatc atggaagcaa tcggagctga aaatgactta gcacatacag
     1141 ctttaaggct ttctttgtca cgttttaaca ctgaagaaga aattgattat gcagcaaaac
     1201 aaattaaaaa tgcaacacag agattaagag caatttcttg tacttatgct tataatccaa
     1261 ataattacaa ataaggatga aaaatgggaa aaaatagttt aattggtgga tccatttggg
     1321 atgagtattc acaaaaagtt caagatagaa tgaataatcc tcaacatatg ggagaattta
     1381 gtgaagaaga tgctaaagca cgcaatgcaa aattgatcgt agctgatttt ggtgcagaaa
     1441 gttgcggcga tgcggtaaga cttttttggc ttgtagatga aaaaactgat aaaattatcg
     1501 atgcaaaatt taaaagtttt ggttgtggta cagctatagc aagtagtgat actatggtgg
     1561 atctttgtat aggaaaaact gtagatgaag cagtaaaaat cacaaattta gatgtggaat
     1621 ttgctatgcg tgataatcca gaaattccag ctgttccacc tcaaaaaatg cactgttcgg
     1681 ttatggctta tgatgtaatc aaacaagcag cagcgcatta taaaggtata agtcctgaag
     1741 attttgaaga tcaaattata gtttgcgagt gcgctagggt aagtcttgga actattaaag
     1801 aagtgattaa acttaatgat ttacacactg tagaagaaat cacacaatat actaaagcgg
     1861 gtgctttttg taaatcctgt atcaaaccag gcggacatga aaaaagagat tattaccttg
     1921 tagatatttt agctgaaact agagctgaaa tagatagaga aaaactcaaa aatacaatga
     1981 aaagtgatgt agcttttgat gaaatgaccg tagtgggaca attaaaagca gttgaaagtg
     2041 ttttagatgc tgaaattcgc cctatgcttc ataatgatgg tggagatttg gaagtgattg
     2101 atatacaaaa ggctgaaggt gcagcaattg atgtttatat tcgttatctt ggtgcttgta
     2161 gtggttgttc tagtggaagt ggtgcaacac tttatgctat tgaaacaatt ttacaagaag
     2221 aattaagtcc aaatatacgc gttatgccgg tttaaaaaat agcaagataa aatcttgcta
     2281 ttttatagct tttgcttgca aatcaagggg tggtaaattt tctatataaa tactacgact
     2341 tgggaaagca aaggttaaac catttttttc aattatacgc ataaactcaa gcattaaact
     2401 ttgtctagct tctctaaaat cttttccacc tatttctttg atataaaaat aaagctctat
     2461 attaatacta ctatctgcaa attcacttaa agccacataa caagcatttt tatagccttc
     2521 taaatcatta atagatacaa gattttgacg atattttgtt gtatgatcgc catattttaa
     2581 tgcgctatcc tcatcgtgag ctactaaatc acttgtatgc aaaaattctc ttagatcttt
     2641 tacacattgt tctagttttt caggagtagc atcataacca acacccaaat acattctaac
     2701 atgacgaccc atgcgtcttt tgctccaatt tttgatatta gctcccataa tagttgaatt
     2761 tggtaaaaat acaagacaat tatcaaaagt tctaatagta gtttttctaa gtcctgtttc
     2821 aaccacggtt ccttctatgc ctgaaacctc tacccaatct ccttgattaa agctattatc
     2881 aaaaagtaag agtatagaag caaagaaatt tgcaatgata tctttcgccg ctaaagcaac
     2941 agctaaacca ccaattccca aagatgcaat aatagccgag atattaaaac caagttgtgc
     3001 taaaatataa agaagtgcga tcacaaaaat aacaaaatat aaaattttaa tgactaaatt
     3061 taccacttct tttttgccac tcttttgtgc aagttttgaa accaaaacca cgccatatcc
     3121 atcaagtatc cttaaaatca accaagcgat taaaacagca taaactatgt ggaaaagatt
     3181 acttaaatta atacttaaag gagcaggata agttgctatt gtaagacaaa gtgaaatggc
     3241 ataacaaata agcaaaaaac ccacaggttt tttaatattg tctataaaaa taaccttaat
     3301 atcatctgca tcgcttttat tgtgataaac taaacgaacg aggataaaat aaactatatt
     3361 tgaaaaaaag cgtcttaaag acataaaaaa aactaaaact aaaatcgaaa taactatctt
     3421 acccgtattt ataaaatcaa tattggccat ttcattgata cgatctatcc atacttgaag
     3481 ttcaagcaaa gaaaaaatat aattactttc taacaaatct gcattcgcac gcaaatattt
     3541 taaaatttct acataagcat ccacagcatt aaaaatcatt tcttctttat tggaaatttt
     3601 ctctaattca gatggattat tgattttagc tttataaata ctaagatcta tattggttga
     3661 attttgcaaa ttttccattg ccttatcgac cgtagagatt atactttcac tatttgctgc
     3721 atttttaaaa agtctttcaa gctcaaataa agacgaataa aaacttttaa caacatctaa
     3781 atacataata tttaaggttg tatctacata aacataaggt ttgtttatgc tcttcttttg
     3841 taaatctaac aaattttgcc ttgtttttaa aaagctttct actgcttttt cattgatttg
     3901 ttgctttact atcatatcgg gtattttaga aagaatagac tttttatctt tttcaaattc
     3961 gcttaaaatt ccatcatagg aacttgaatt ttcatcatta ttttttttaa attctttaat
     4021 ttggcgattt aaatcgatat atttttgcac caaactataa acactcttat cttgcgcact
     4081 tgcattggta tctataagac gaaattcatc cccccaaaga catgaaatac ctaaaagaaa
     4141 caaaatgatt atttttttca ttgcattttc ctattttgaa ttaatttaaa aattttagtc
     4201 ttaaaatcat actcatatat ttcacccgtt tcgatgatat aataccaagc atgcacttct
     4261 aatcttccct catctaaagc ttcttgcact ccaggatagg taaaaatatt ttgcaaagaa
     4321 ttcactaagt taagtttttc agtaagccaa gaacgcatag ctatatcatc tcttgcaaag
     4381 atcgtaacat ccctttttat aggatcaagc atagtgagcc atttttttac attaggaatt
     4441 ttatccaatt cttcatcaga atagtataat gcattacaac caccacaatt actatgtcca
     4501 catacaacga tattcttaat gcgtaaagaa tttaaagcat attctattgc tgaagtagtc
     4561 gctaaataat cctgacccac gcgataaggt gggacaatat ttgcaatatt tcgtatcaca
     4621 aaaagctcac ctgggcctgt attggtgatt aaattgggga tcactctaga atcagaacaa
     4681 cctatgaaaa gagtatgagg attttgctta tttttaagac tttcaaaaag ttcttcatgc
     4741 tctttaaaat cctcttgcat aaatttgatc gcaccgctaa taagattatc catatatcaa
     4801 cctaattgaa aaatcttaaa attataacaa attttcagca aagaatttca cctacaagca
     4861 aacattcgca aattaactct ttattaaatt ttttatgcta gagttcgctc aagatttaag
     4921 ttaaaatcga aatcttttaa ggaggatgaa tatgagtctt tatgatagag actattcacg
     4981 atcaagagaa tttgaaaaca ctcgttcaag tgaacttggt atttttatta aacaaactta
     5041 tcaacttttt gcggcttctc ttttagcagc aactgttggt gcatatgtag gaatttatgc
     5101 tttagcggca ttttttatac aatcacaagt aaccttttgg atactttttg ctgttgaaat
     5161 aggacttttg attgccttgc aatttaaaaa acgcgaagct ccattgaatt taattttact
     5221 ttttggtttt actttttgtt caggcttaac cctaacgcca ttactcattt ctgttcttgc
     5281 cctaccagca ggtggagtaa tcatcgctca agcttttgct ctaacaacag tagcttttgc
     5341 agcgcttagt atttttgcta tgaataccaa aaaagatttc acactaatgg gtaaagcttt
     5401 atttatagtt ttaatcgtgg ttgtagcggc ttctttgctt aatatcttct tccaaagcag
     5461 tttattaaat ttagctattt cagccgtagc agcaatttta ttttcatttt atattcttta
     5521 tgatacacaa aatattattc gcggaaacta tgaaactcca attgaaggtg ctgtagcgct
     5581 ttatcttgat tttgtaaacc tttttgtatc tttacttaat atcctaagaa gtttcaatag
     5641 tagataattt tttgcgggaa agtccccgca aaattcttaa aatttcaaat cttttcaagt
     5701 tttatttagt tacaatatct aactcaaaaa atttttaaaa tttaggaaaa tttatgatta
     5761 ctcttttaac tattttgcag tttgtcatcg tcgttattat ttgtatagct gttttacttc
     5821 aaaagagctc aagcatagga cttggagctt atagcggaag caatgaaagt ttgtttggag
     5881 caaaaggacc cgcaggattt ttagcgaaat ttactttcat catgggaatt ttacttattg
     5941 caaacactat aggtttagga tatttataca atagtacaag taaagattct ttagctgaaa
     6001 aaatcaaaat tgaaacaaat acaagcattc ctactgctcc aaatgctata aacgtgccag
     6061 ctattccaag tgctccacaa atacctaacg aatcaaatac aagtaagtaa tttataagga
     6121 aaaaatatga ttaatgaaat tttaaacaaa caaaaaactc aaagtgaaaa aagcttagaa
     6181 gctttaaaaa aagattttac taccctacgc acaggtaaag tcaatacaca tatcttagat
     6241 catattcaag tagattacta tggctcttta actcctttaa atcaagttgc aaccgtttta
     6301 gcaagtgatg cttcaacaat aagcattact ccttgggaaa aacctatgtt aaaaactata
     6361 gaaagcgcta ttgcagcagc aaatataggg gtaaatccaa acaatgatgg cgaaagtgta
     6421 aaattattct tccctccaat gacaagagag caaagagaag aaaatgtaaa acaagcaaaa
     6481 gctatgggtg aaaaagcaaa agtttcggta agaaatattc gcaaagatgc aaacgatgcc
     6541 gtaaaaaaac ttgaaaaaga taaagccatt tcagaagacg aagctaaaaa agcctatgat
     6601 gaagtgcaaa aactaacaga tacttatact gcaaaaatcg atgaaagtgt aaaaaacaaa
     6661 gaaagcgaac ttttaaaggt ttaaaaatgg atttagagca aatttataaa gattgtgggg
     6721 cttatttaca aggacatttt ttactcagtt cgggtaagca ctctgagttt tatcttcaaa
     6781 gtgccaaagt cttagaaaat ccaaaattag cagcaagact ttgtgatgag cttgctaaaa
     6841 ttatagccga atttaatata gaatttgaca gcatttgttc tcctgctttg ggaggaattt
     6901 tagcaggata tgaacttgct agagcttgtg ataaacgctt tatttttacc gaaagagtta
     6961 atggagaaat gactctaaga cgcggttttg aggtaaaaga aggcgaaaga tttatcattt
     7021 gcgaggatat catcacaacg ggcggaagtg ctttagaaag tgctaaaatc atagaaagct
     7081 taggaggaaa agttttaggt tttgcagcat tggcaaatcg cggtttttgc gcggttgaaa
     7141 atttaaaaaa tcctaaaaaa ccgagtgcaa aactgcctga taatttacct ctttttactt
     7201 taggaaattt tgattttcaa atttatgatg aaaatgattg tccgttttgc aaagaaggaa
     7261 gtaaagctat taagccagga agtcgcggaa attaaatgaa aactaaggca aaaatagcct
     7321 ctagatggtt aagatttaga gctttgctta tagatatatt tttaatttat gtccctatct
     7381 tatatttatt ttatttttta ttgggctcta aggaggcttt tttaaacaac tcctatatca
     7441 cagccctatg tactttctta tttggtttta ttcaagcttt atttttagcc tcaaaagctc
     7501 aaagtccagg
//
LOCUS       DBBXRO010000083         7501 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.084, whole genome shotgun sequence.
ACCESSION   DBBXRO010000083 DBBXRO010000000
VERSION     DBBXRO010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7501
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.084"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            50..1474
                     /locus_tag="ACJFEZ_001315"
     CDS             50..1474
                     /locus_tag="ACJFEZ_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HGG0917428.1"
                     /translation="MDFLTSLDESIQFLIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNAEHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVQLPKSNWIAMWIFLGAIALVALLGIFDSLRPNWGQV
                     VKNGIPQVDALGNPKMDILSMVSVIQMFMLLAGSLIIIFTKTDVKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKKALGDVVVDYPWTYAIMLLLISKFVNSQAAAIAA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVISSCVAGYFLALAAGYL"
     gene            complement(1509..3482)
                     /gene="uvrB"
                     /locus_tag="ACJFEZ_001316"
     CDS             complement(1509..3482)
                     /gene="uvrB"
                     /locus_tag="ACJFEZ_001316"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HGG0917429.1"
                     /translation="MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKVKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMYSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKIEKMPANERAKI
                     VKELRKQMLEAAKALEFEKAATLRDEINKLKDL"
     gene            3636..3866
                     /locus_tag="ACJFEZ_001317"
     CDS             3636..3866
                     /locus_tag="ACJFEZ_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917430.1"
                     /translation="MFDEKIINTMSDKVNELIEKYNEVCEANENLRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIFKKIEAVLGK"
     gene            3856..4101
                     /locus_tag="ACJFEZ_001318"
     CDS             3856..4101
                     /locus_tag="ACJFEZ_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917431.1"
                     /translation="MASDNLKQVIINVSAKDFIVKCSGEFANFLEDDIALISGGTKKI
                     ELKRFVDAFVKKSYENYILERELKKLIKAINEELPVK"
     gene            4098..4544
                     /locus_tag="ACJFEZ_001319"
     CDS             4098..4544
                     /locus_tag="ACJFEZ_001319"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HGG0917432.1"
                     /translation="MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDY
                     EMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKEKLFYCQTSQNCTYSLLHTPIYS
                     SFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL"
     gene            4541..6379
                     /locus_tag="ACJFEZ_001320"
     CDS             4541..6379
                     /locus_tag="ACJFEZ_001320"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HGG0917433.1"
                     /translation="MRYYELAVFGFYLQNLTFHSKEEIPALREVIIDLKNKKNLRALV
                     LKECQKPEFQTKEIKEITSFSLSCVQFELAKFISYYYSSKLGFVLGLFSTYQTYTCDL
                     IKIENEPKLSQKQKEALEFIKANPTSLLFADTGSGKTEIYICLIKQYLEQGKQVLLLM
                     PEISLTPQMQKRLEVYFKDKFFLWHSKISKKKKQENLERFCKGEALLVAGARSALFLP
                     FVNLGLVIVDEEHDNSYKASNQPYINARDLTLFLSSKFDIKVLLGSATPSLTSFYKQK
                     SFRLKGTFFKSKKHFLYDENELGVTPMLLGELQKSLENQKQAIIFLPTKANFRQIVCK
                     DCGQTIKCPFCSIAMSLHKKRNVLKCHYCNYTSLIEQNCPSCQGVMLEARKMGTAELQ
                     ELLQEALPLARIAKFDSDEITSIRKLNAILKDFNENKIDILIGTSMLAKGHDYHSVDL
                     SVILGLDEYLFRPNFKASEETLALAMQVAGRAGRKGEGRVLLQTKNRNFFERYIEDYD
                     SFLQDELENRKDLYPPFKRLLRIVIEDKEQKQAQNLCKKLVDQISHILKVEIIGYGAC
                     SIEMLKGQYRFYILLRSDFYKPLIKIQEYALNFKNVSVDIDPIDFL"
     gene            6439..>7501
                     /gene="ispG"
                     /locus_tag="ACJFEZ_001321"
                     /gene_synonym="gcpE"
     CDS             6439..>7501
                     /gene="ispG"
                     /locus_tag="ACJFEZ_001321"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HGG0917434.1"
                     /translation="MEYKRFKTRQIKVGDVLIGGDAPISVQSMLFTKTRDIEGSLEQL
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVFCAEFIDGVRI
                     NPGNIGSKENVKEVVKACKERGIPIRIGVNHGSIEKEFSDKYGYGVDAMLESALYNIK
                     LLEDLDFFDIKISMKTSDTQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTIKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIKVARAILQDSGVQKSGVNIISCPTCGRIQSDLIS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ENELVDRFLAEVEDEVKSRE"
BASE COUNT         2478 a         1075 c         1344 g         2604 t
ORIGIN      
        1 gtgttataat cacaataatt tttaaattta ttccataaaa ggagttaaaa tggacttttt
       61 aacgagtcta gatgagagta ttcagttttt gatacaaatc atcattgttt taatttgtct
      121 tttttacggt gcaaaaaaag gtggtatagc tcttggctta ctcggtggta taggtatttt
      181 aatgcttgtt tttgcttttc atataaaacc tggaaagccc gctatagatg taatgcttac
      241 tatcttagct gtggttgttg caagtgcgac tttacaagca agtggcggtc ttgatgtaat
      301 gcttcaaata gctgaaagaa ttttaagacg caatcctaaa ttcttaacca ttttagctcc
      361 ctttgtaact tgctttttaa ccatactttg tgggacagga catgtggttt atactattat
      421 gcctattatt tatgacatag cgattaaaaa tggaattcgt ccagaacgcc ctatggcagc
      481 agcttctata tcttcacaaa tgggtattat tgcaagtcct gtttctgttg cagttgtgag
      541 tttaacagct ttgcttttaa atgcagaaca taaattagca ggttttgatg gctatatcaa
      601 tcttcttcaa attactatac ctagtacgct ttttggtgtt ttatgtgtgg gaattttttc
      661 ttggtttaga ggaaaagatt tggataaaga tgaggttttt caagaaaaac ttaaagatcc
      721 tgaatttaaa aaatatgttt atggtgattc taaaacactt ttaggtgttc aacttccaaa
      781 aagcaattgg attgcaatgt ggattttctt aggagctatt gctttagtgg ctttattagg
      841 tatatttgat tctttacgcc caaattgggg acaagttgta aaaaatggta ttcctcaagt
      901 agatgcttta ggcaatccta aaatggatat tttatctatg gtttcagtga ttcaaatgtt
      961 catgctttta gcaggttctt tgattattat ctttactaaa acagatgtaa aaaaaatcgg
     1021 ctcaaatgag atttttaaat ccggtatgat agctcttgtt gcagtttttg gaatttcttg
     1081 gatggctgat actatgtttg ctgttcatac tcctatgatg aaaaaagctc ttggagatgt
     1141 agttgtagat tatccttgga cttatgcaat catgctttta cttatttcaa aatttgtaaa
     1201 ctctcaagca gcagctattg cagcttttgt tcctttggcc ttaggaatag gtgttgaacc
     1261 aggtgtgatt gtggcttttg cggcagcttg ctatgggtat tatattttac caacttatcc
     1321 aagtgactta gcgactatac aatttgatag atcgggtacg actcatatag gtaaatttgt
     1381 tatcaatcat agttttattt taccaggtct tataggtgtg attagttctt gtgttgcggg
     1441 atatttctta gctttagcag caggatatct ttaatatttt gcaggatttt tcctgcaaaa
     1501 taaaaatact ataaatcttt taatttattg atctcatctc ttaaagtcgc tgctttttca
     1561 aattcgagcg ctttagcagc ttcaagcatt tgtttacgaa gctcttttac gattttagct
     1621 ctttcattag caggcatttt ttcaattttt ttacctttgc gataaatttc tcctaagttt
     1681 tcttcatttt ttaaactttc ttcgatgtgt cgcttgactg aagttggggt gatgttatgt
     1741 ttttgattgt aagcttcttg aagtttgcga cgctcatttg tagtatccat agcttcttgc
     1801 atggattttg taatcttttt gcaaaagagt aaaactttac cattgacatt tctagcagct
     1861 cttcccatgg tttggattaa acttgtagtg cttcttaaaa aaccctcctt atctgcgtcc
     1921 ataatggcaa taagcgaaac ctcaggcaaa tcaagtcctt ctctaagtaa atttatacct
     1981 attaacatat caaaagcacc gcttcttaag cctcttatga tttcattgcg ttctattgca
     2041 tcaatatctg aatacatgta ttttacttta ataccaagtt ctaaataata ccttgtaagc
     2101 tcttcagcta gttttttagt caacacagta actaaaacgc gttcgtttct ttgtataact
     2161 tttttggctt catcaaataa aatttcaact tgattatcgc tatctttaag ttctatcaaa
     2221 ggatcaagta atcctgttgg acgcataatt tgatgaaaga tattttcctt gctaagttca
     2281 agctcaagcg gggcaggggt ggctgaaaca aaaagaaact gacaatcttt atggataaat
     2341 tcatcaaaca ttaaaggacg attatcaaga gctgatggaa gacgaaaacc ataatctacc
     2401 aaggtttgtt ttctgcttct atctcctgca aacatacctc taaattgtgg taaagaaaca
     2461 tggctttcat cgactataac aagaaatttc ctatttttaa tcgcaaaata atcaaaaagc
     2521 gtataaggag tatcaccttc tttaagccct gttaaatgtc ttgcataatt ttcaacgcct
     2581 ttacacattc ctgtgcttgt aagcatttca agatcaaatt caaccctttg tttaaggcgt
     2641 tgatattcta cgagtttatt ttcatgttca aaataagcaa ggcgttcgtt aagttctgct
     2701 tttatgtctt ttatcgcttg ttttagtctt gtttcaccta cactaaactg gcttgtagga
     2761 tagagtatga agcgttttaa atctttgact tttttatttt ctaaaacatt gtaatgatac
     2821 atagcatcaa gctcatcgcc aaaaaattca agtcttacta cttcatcttc ataataagct
     2881 ggataaatgt ctataatatc accttgtacg cgaaaatcag cacgatcaaa gaaattatca
     2941 tttcttttat aacccatgtc tacaagtttc tttaaaagtt ctttttgtga aatttgcatg
     3001 tctagttcaa agattaaaac cattcctatg tattcatttg gattaccaag tccataattt
     3061 gctgaaacac tagctatgca aactacatct tcataactta aaagagaagc agtagcactc
     3121 agtcttaaac gctctaagtc ttcattagtg gagctatctt tttctataaa aacatcggtg
     3181 cgcggtatat aagcttcagg ctgataataa tcataataag aaataaaata ttccacatgg
     3241 ttcttagaaa aaaaaccttt aaattcgcta taaagctggg cgcaaaggct tttgttatga
     3301 ctcatgataa gagtgggcat attaagttct tttatgacat ttgccatggt aaaagtcttt
     3361 ccgcttcctg ttacgccgag tagggtttga tatttattac ctttttttat gcttttgaca
     3421 ataccttgta ttgcttgttc ttgatcagga cttggtttaa aatcgcttgt aagttctaac
     3481 attttcccac tttttgaaag ttttttagaa aaattctaaa agaaaatgct ttaattaaaa
     3541 attaattgac tataaaaaac ctaaatttaa atttttttct gctacaatta caaaaaatat
     3601 ttttatttta aatttctata gcagaaggca aatttatgtt tgatgaaaaa attattaaca
     3661 caatgtcaga taaagtcaat gagttgattg aaaaatacaa cgaagtgtgc gaagcaaatg
     3721 aaaatttaag aaacgaactt gtaagcgtaa aagcgcaaaa tgaagcaaag agtaatcaaa
     3781 tcatgcgttt ggaagaagag cttaagtctc gcaatataga aagtgaagat attttcaaaa
     3841 aaatagaggc tgtacttggc aagtgataat ttaaaacaag ttattatcaa tgtttctgca
     3901 aaggatttca ttgttaaatg cagtggagaa tttgcaaatt ttttagaaga tgatatcgct
     3961 cttatttctg gtgggactaa aaaaatagaa ttaaagcgtt tcgtcgatgc ttttgtaaaa
     4021 aaaagctatg agaattatat cttagaaaga gaacttaaaa aacttataaa agcgatcaat
     4081 gaagaactcc ctgtaaaatg aaaaaggctt ttactctctt agagcttgtt tttgtgatat
     4141 tgattttggg gatattggca agtttaagct tctcttttgc caatcaaaat aaaaacgatg
     4201 cgaaattatt aaaattgaaa atagattatg aaatgctaaa ttcagcccta tcccttatgc
     4261 gtactcaagt tgaactcaaa caaatcagtt ctttttctcc taatcttgat gaagcaaaaa
     4321 tcaacactca aaaagaaaaa cttttttact gccaaactag tcaaaattgc acctattctt
     4381 tgcttcatac acctatttat tctagtttta atgcttggat gaaaacagca cccaatcgat
     4441 atagattttt tttaaataca aaagaatggg ttgatttttt ttataatgct gattttgcta
     4501 ttttagaatg tttgagtgaa aaatattgta aagaattatt atgagatatt atgaattagc
     4561 ggtttttgga ttttatttgc aaaatttaac ctttcatagc aaggaagaaa ttccagcttt
     4621 aagagaggtg attattgatt taaaaaataa aaaaaatctt agagctttag tattgaaaga
     4681 atgccaaaag cccgaatttc agacaaaaga gattaaagaa attacatctt tttcattaag
     4741 ctgtgtacaa tttgaattgg cgaaatttat ttcgtattat tattcttcaa agctaggttt
     4801 tgtattagga cttttttcta cttatcaaac ttacacttgt gatctgatta aaatagaaaa
     4861 tgaacccaaa ttaagccaaa aacaaaaaga agctttggaa tttataaaag ctaatcccac
     4921 ttctttgctt tttgcagata caggtagtgg aaaaactgaa atttatattt gcttaataaa
     4981 acaatattta gagcaaggaa aacaagtttt acttttaatg ccagaaattt ctcttactcc
     5041 acagatgcaa aagcgtttag aagtgtattt taaagataaa ttttttctat ggcattctaa
     5101 aatttcaaag aaaaaaaagc aagaaaattt agagcgtttt tgtaagggtg aagcactttt
     5161 ggtcgcagga gcaagatcgg ctttgttttt gccttttgta aatttagggc ttgttatagt
     5221 ggatgaagaa catgataatt cttacaaagc gtctaatcaa ccttatatta atgctaggga
     5281 tttaacactt tttttaagct caaaatttga cattaaggtg cttttaggtt ctgctactcc
     5341 ttctttaacg agtttttaca agcaaaagag ttttagactt aagggtactt tttttaaaag
     5401 taaaaaacac tttttatatg atgaaaacga attgggcgta actcctatgc ttttgggcga
     5461 gttgcaaaaa agcttggaaa atcaaaaaca agctatcatt tttttgccca ctaaggccaa
     5521 ttttagacaa attgtgtgta aagattgtgg gcaaactata aaatgtcctt tttgctctat
     5581 tgctatgagt ttgcacaaaa aaagaaatgt tttaaaatgt cattattgta attacacttc
     5641 tttaatagag caaaattgtc ctagctgtca aggtgtgatg ctagaggcta ggaagatggg
     5701 cacagcagaa ttacaagaac ttttgcaaga ggctttgcct ttagcaagga tagctaaatt
     5761 tgatagtgat gagattacga gtattcgaaa gcttaatgct attttaaaag attttaatga
     5821 aaataagatc gatatactta taggaacttc catgcttgct aaaggacatg attatcatag
     5881 tgtagattta agcgttattt taggacttga tgagtatttg tttcgtccca attttaaggc
     5941 aagcgaagaa actttggctt tggctatgca agtggcagga agagcaggac gcaaaggtga
     6001 gggaagggtg cttttgcaaa ctaaaaatag gaattttttt gaaagatata tagaggatta
     6061 tgatagcttt ttgcaagatg aattagaaaa tagaaaagat ctttatcctc cttttaaacg
     6121 ccttttgaga attgttatcg aggataaaga acaaaagcaa gctcaaaatt tgtgcaaaaa
     6181 attagttgat caaattagcc acattttaaa agttgaaatt ataggctatg gagcttgtag
     6241 tatagaaatg ctcaaaggac aatatcgttt ttatatattg cttcgtagcg atttttacaa
     6301 acctttaatc aagatacaag aatatgcctt aaattttaaa aatgttagcg tagatataga
     6361 tcctattgat tttttatgag gaattaaagc aaaaaatagc tagaatttta aaaattattt
     6421 ataaaaagaa gcttgaaaat ggaatacaaa agatttaaaa caagacaaat taaagtgggt
     6481 gatgttttaa taggtggcga tgcgcctatt tcagtgcaat ctatgctctt taccaaaaca
     6541 agagatattg aaggttcttt agagcaactc aatcggcttt attttgcagg agctaatatc
     6601 gtgcgtttgg cgtgtttgga tatggcggat gcaagggctt taaaggagat taaagcaaaa
     6661 agtcccttgc ctttaattgt agatatacat tttaatcaca atttagctgt attttgtgct
     6721 gaatttattg atggggttcg tataaatcca ggcaatatag gctcaaaaga aaatgttaaa
     6781 gaagtagtaa aagcttgtaa agagcgaggc attcctatac gcataggtgt aaatcacggc
     6841 tctatagaaa aagaatttag tgataaatat ggatatggtg tagatgcgat gttagaaagt
     6901 gcattgtata acattaaact tttagaggat ttggattttt ttgatataaa aatttcgatg
     6961 aaaacttctg atactcaaaa gaccatagag gcttatgaaa gattaagacc actttgtgat
     7021 tatccttttc atttgggagt aacagaggca gggactaaat ttcatagcac gataaaaagt
     7081 tctattgctt taggaaattt gcttcttaaa ggcataggtg ataccatgag ggtttcaatg
     7141 acgggcgaac ttgaagaaga aatcaaagtc gcaagagcga ttttacaaga tagcggggtg
     7201 caaaaaagtg gagtaaacat tatctcatgt ccaacttgtg gaagaattca aagtgattta
     7261 atcagtgcta ttaaaatcgt agaagaaaag actaaacata tcaaagagcc tttaaatatc
     7321 agtgttatgg gctgtgttgt aaatgctttg ggtgaggcta agggcgctga tgtggctata
     7381 gcttttggaa aaaatcaagg acttgttata agacatggag aagtggtggc aaaactcaaa
     7441 gaaaacgagc ttgtggatag atttttagct gaagtagaag atgaggttaa gagtagagag
     7501 a
//
LOCUS       DBBXRO010000084         7196 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.085, whole genome shotgun sequence.
ACCESSION   DBBXRO010000084 DBBXRO010000000
VERSION     DBBXRO010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7196
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.085"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            17..334
                     /locus_tag="ACJFEZ_001322"
     CDS             17..334
                     /locus_tag="ACJFEZ_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HGG0917435.1"
                     /translation="MSVLVIGADEITPIKAVLYDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLDKEFSCS
                     KVE"
     gene            334..1029
                     /locus_tag="ACJFEZ_001323"
     CDS             334..1029
                     /locus_tag="ACJFEZ_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917436.1"
                     /translation="MLFGFDDKREFIPRVYSSLCKQELVKTFLIQYNASIDSALRIPL
                     SYAKSAKDLKMPFQNFLQDVIHTPFGKIKNIDKNLTLNISYFQKRKSLIFKTKIFQNV
                     DILRLLRAYFRGICFDAQVLFDFYVYDKISHQNQNRSIVQNDNLIIIDNKIAVLPLCK
                     EVDLQNLNIDNEIQKISKFIYQNQFEQIYIVCPRNKKFTHFIQIKHFLCDLNKTMLKL
                     VPYSITNKLIRRK"
     gene            1029..1520
                     /gene="fldA"
                     /locus_tag="ACJFEZ_001324"
     CDS             1029..1520
                     /gene="fldA"
                     /locus_tag="ACJFEZ_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HGG0917437.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVLNVADIDAAKINSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAE
                     NLKNAGANLVGEVSTDGYTFESSDAVVDGKFVGLALDNDNQEDQTEARIDAWVEQIKA
                     HFA"
     gene            1487..2365
                     /locus_tag="ACJFEZ_001325"
     CDS             1487..2365
                     /locus_tag="ACJFEZ_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HGG0917438.1"
                     /translation="MGRTNQSSFCLIFKNIGFLCRYCIVFLILTIPLFSKPDQKITPI
                     IEKAKDYFFIEKDLKLTHYHTSYRIFVAKSKIKYKKYKVIYLLDGNAFFSRFLNLYNY
                     LPKEDILIVGIGYDSPLAFDTTHRTKDYTPKVQGLEFQNGGGSFEFRQFIKTELLPYI
                     NTHYETSEDFQILFGHSFGGLFALDTLFNDTKLFSHYFIISPSLWWGGSEFIPKRISL
                     SNCPQIYMALGSAESNSSIKKAKAKISVKELGMQILNHSACEVEFKLFENETHGSVIE
                     KAMIWAIENIKSEPID"
     gene            complement(2370..4031)
                     /locus_tag="ACJFEZ_001326"
     CDS             complement(2370..4031)
                     /locus_tag="ACJFEZ_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HGG0917439.1"
                     /translation="MKDFVFIQNENLIPLPDEINIWENCKDEEVLISNEKAQKAQIYA
                     PEINFYLKSSQDEILEKSKNILKLYEARANVYDLGLDLEQNKEVKNRIILVDSDDTMA
                     DFLKKQNFKIISLKNEEILAVFGSIGELCAVILNQGEEVEIDFDILLFNTNSNDIRKD
                     FTRQSGCYNISNFKNQESLLKFLQDKSPKYTYKTYITYDSSVCQYHERRSEHCAKCAE
                     ICPTIAILKDDENKHLEFSQVDCLGCGGCISVCPSGSLDYTPMPRESFFELCEFYKEK
                     KILIIPKKMSLENLNIKLPKDVLPFMIEGEKWLSSMHFLTLLQSSGANLVFYTDFISR
                     GSAEAIDLLNTFFERKFQKEAIFTAKDEKELQNALGKQEFIENLSFDFHNNTLTTREN
                     FAKRMQNLIQNDDFGAKESGEWLRYGKIEINANTCTLCLSCVGACNVGALIADTKENA
                     LKFNASLCTTCGYCEVSCAEKDTLKLTRSGMEFNPNYFEYQTMAKDELFACIECGKEF
                     ATKKAVEKIANLMKPKFGNDESKIKTLYCCADCKAKVMIEAMRKG"
     gene            4101..5423
                     /gene="selA"
                     /locus_tag="ACJFEZ_001327"
     CDS             4101..5423
                     /gene="selA"
                     /locus_tag="ACJFEZ_001327"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HGG0917440.1"
                     /translation="MNKFRTFPQIGSLIDDESLKEYPFYLRSYFCKSVVAKLKANISE
                     DLLDKNTILEKIQQEIQKHLRKDLQSVINATGVVIHTNLGRSVIDESIFEKSKDVLCN
                     YANIEFDLESGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLHSLCFDKELVT
                     SRGELVEIGGSFRVSEVIKAAGVKLCEVGTSNKTHLKDYEKAINENTKMLLKTHKSNF
                     ALIGFHSEVGIKDLGNLAKEKGLLSYYDLGSGWCENLNPKLIKNEPKIKDLIKHCDIL
                     SFSGDKLFGSVQAGIILGKKELIDKIKENQLLRMLRVDKITLALLNESLKIYLEKDYE
                     KITSLKLLNDEIAHIKEKALRVQNEIQIKSELKMSKSLVGGGSMPDKTLETYVLAFNG
                     NALKLQEKFRAKNIIGRIENEAFVLDFRTIREKDLSKLIQIINTMENL"
     gene            5420..>7196
                     /gene="selB"
                     /locus_tag="ACJFEZ_001328"
     CDS             5420..>7196
                     /gene="selB"
                     /locus_tag="ACJFEZ_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HGG0917441.1"
                     /translation="MNSLLIGTAGHIDHGKTSLIKAINGFEGDSLKEEKERQITINLS
                     FSNLNYKQKHLSFIDVPGHKDLVKTMISGAFGFSACLFVVDINEGLKEQSIEHLEVLE
                     LLGVKDIILVLSKCDLCENPKEQEQKILNSLEFIPMKVFHTSIKDQESIERLKNYLLN
                     LECKNANANLVFRYYIDRVFSLKGIGTIVTGSLNEGKISLNEKIICLDNQKELVVKNI
                     QNHESNFAEISAFNRVALSLNCDYKELKKGYVLSKKGFFKGFKECDVLIKAKRLKNEK
                     MLFCVGAKSIECKISILKELENNEFFAHLEFEKNLFLCFNEKFILLQNNRVVGGGEVL
                     NPVSEPLKKEQKNKFLMLLKNKELKKAFEFLKNTHKYGFGLLSSYQRFKLSHEEALNL
                     AKELNGVFIDEKNLNIYNLLALDELKKFISFILEKNPYAMLSASSLALRLPWASAEFC
                     EFGLQNLSNLLEFEKGVYFKKGINYEKLREKNNDELYNILKKQGIKPQAPYNLYEFLE
                     LDRKSGDEILKKLTKQNRVIRLSHNLFIEKNALDKLMQECLEILKSQSLDIQSMKERF
                     NLSRKYAIAYLEYLDKDERVQKKDEK"
BASE COUNT         2548 a          925 c         1227 g         2496 t
ORIGIN      
        1 tcacaaagga gagcttatgt cagttttggt tattggtgca gatgaaataa cacctattaa
       61 ggctgttttg tatgatttag gtgcaaaaaa aatagagcat tgggatgcgc gcaatgaaaa
      121 tagagtcaat cgcaaaccta ttccttgtga tacggaatgt atagtaatgc ttacgagttt
      181 cttaaatcac aatactatga aaaaaattaa aaacgaggct aaaaaacgaa aaattccatt
      241 agtttgcgca aaaagaagcg taagttgcgt gtattgtgag tattgtaaga tatttaattt
      301 agataaagaa ttttcttgct ctaaggttga ataatgctat ttggatttga tgataaaaga
      361 gaatttatcc ctcgggttta tagttctttg tgcaagcaag agcttgtcaa aacttttttg
      421 attcaataca atgctagtat tgatagtgct ttaagaatcc cgctttcata tgcaaaaagt
      481 gcaaaggatt taaaaatgcc ttttcaaaac ttcttgcaag atgtgataca tacgcctttt
      541 ggcaagataa aaaatatcga taaaaatctt actttgaaca tttcttattt tcaaaaaaga
      601 aagagtttga tttttaagac taagatattt caaaatgtcg atattttaag gcttttaaga
      661 gcttatttta gaggaatttg ttttgatgcg caagttttat ttgattttta tgtatatgat
      721 aaaatttctc atcaaaatca aaatcgaagc attgttcaaa atgataattt gattatcata
      781 gataataaaa ttgccgtttt acctctttgc aaggaagtgg atcttcaaaa tttaaatatc
      841 gataacgaaa ttcaaaaaat atctaaattt atatatcaaa atcaatttga acaaatctac
      901 atagtttgtc cgcgtaacaa aaaattcaca cattttattc aaataaaaca ttttttatgc
      961 gatttaaata aaactatgtt aaaattagtt ccgtattcaa taacaaataa acttataagg
     1021 agaaaataat gtcagtagca gtaatttatg gaagtgctat gggaaataca gaaggagcag
     1081 caaatacaat cgcttcaaaa ttaggaatta gtgatgtttt aaatgttgca gatattgatg
     1141 cagctaaaat taattcttat gataaattaa tttgtggaac ttctacttgg ggaagtggtg
     1201 atttacaaga tgattgggat ggttttgatt tttcaggtct tagccttggt ggaaaaactg
     1261 tagctgtatt tggaatgggt gatagtgaaa gctattcaga cactttctgc ggcggtatgg
     1321 gaaaacttgc agaaaattta aaaaatgcag gcgcaaattt agtaggtgaa gtttcaactg
     1381 atggctatac atttgaatca agcgatgcag ttgttgatgg aaaatttgta ggtcttgcac
     1441 ttgataatga caatcaagaa gatcaaactg aagcaagaat tgacgcttgg gtagaacaaa
     1501 tcaaagctca ttttgcttaa tttttaaaaa tatcggcttt ctttgccgat attgtattgt
     1561 atttttaatt ttaactattc cacttttttc aaaaccagat caaaaaatta ctcctattat
     1621 agaaaaagca aaagattact tttttataga gaaagattta aaattaacgc attatcatac
     1681 aagttatcga atttttgtgg caaaaagtaa aataaaatat aaaaaatata aggtaattta
     1741 tttgcttgat ggcaatgcgt ttttttcgag atttttaaat ctttataatt atttgcctaa
     1801 agaagatatt ttaattgttg gtataggtta tgatagccct ttggcgtttg atactaccca
     1861 taggacaaaa gattatactc ctaaggttca aggtttggaa tttcaaaatg gaggaggtag
     1921 ctttgaattt agacaattta tcaaaacaga gcttttacct tatattaata cacattatga
     1981 aaccagtgaa gattttcaaa ttctttttgg acattctttt ggcggacttt ttgctttaga
     2041 tactttattt aatgatacaa agctttttag ccattatttt attatttcac cttctttgtg
     2101 gtggggtggt agtgaattta tacctaaacg aatttcttta tcaaattgtc ctcaaattta
     2161 tatggcttta ggttcggctg agagtaattc tagcattaag aaagctaaag ctaaaataag
     2221 tgttaaagaa cttggtatgc aaattttaaa tcatagtgct tgtgaagttg aatttaaact
     2281 ttttgagaat gaaactcatg ggagtgtaat agaaaaggct atgatttggg ctatagaaaa
     2341 tatcaaatca gagccaattg attgattatt tatccttttc tcattgcttc tatcattacc
     2401 tttgctttgc agtctgcaca acaataaagg gtttttatct tgctctcatc attgccaaat
     2461 ttaggcttca tcaaattcgc aattttttct accgcttttt tagtggcaaa ctcttttcca
     2521 cactctatgc aagcaaaaag ttcatctttt gccatggttt ggtattcaaa atagttggga
     2581 ttaaattcca ttccactacg cgtaagtttt agagtatctt tttcagcaca acttacttcg
     2641 cagtatccac aggtggtgca taatgaagca ttgaatttaa gtgcattttc tttagtatca
     2701 gcaatcaaag ctcctacatt acaggctcct acgcaagaaa ggcagagagt acaggtattt
     2761 gcattgattt ctatttttcc atatcttaac cattcgccac tttcttttgc gccaaaatca
     2821 tcattttgga tcaaattttg cattcttttg gcaaaatttt ctctagtagt aagagtgtta
     2881 ttgtgaaaat caaaacttaa attttctata aattcttgct ttcctaaagc attttgcaat
     2941 tctttttcat ctttagcggt aaaaatagct tctttttgaa attttctttc aaaaaaagta
     3001 tttaaaagat ctattgcttc agcacttcct cgtgaaataa aatccgtgta aaaaaccaaa
     3061 tttgcaccac tgctttgcaa aagagttaga aaatgcatag aagaaagcca cttttcacct
     3121 tctatcataa aaggcaaaac atctttgggt agctttatat ttaaattttc taaagacatt
     3181 tttttaggta tgattaaaat ctttttttct ttataaaatt cacaaagttc aaaaaaactt
     3241 tccctaggca tgggtgtata atcaagcgaa ccactagggc acacgctgat acagcctcca
     3301 cagcctaggc aatctacttg agaaaattct aaatgcttgt tttcatcatc ttttaaaata
     3361 gctatcgtag ggcaaatttc agcacacttt gcgcaatgct cactgcgtct ttcgtggtat
     3421 tgacatacgc tagaatcata ggtaatatag gttttgtatg tgtattttgg gcttttatct
     3481 tgtaaaaatt tcagtaaact ttcttgattt ttaaaattgc taatattata acagccactt
     3541 tgtcttgtaa aatccttgcg aatgtcgtta gaatttgtat taaaaagtaa aatatcaaaa
     3601 tcaatttcta cttcttctcc ttgatttaaa atcacagcac aaagctcgcc tatgctgcca
     3661 aatactgcta gaatttcttc attttttaag cttatgattt taaagttttg tttttttaaa
     3721 aaatcagcca tagtatcatc agaatctact aaaataatgc ggttttttac ttctttgttt
     3781 tgttctaaat caagccctaa atcatagaca tttgccctag cttcataaag ttttaatata
     3841 tttttacttt tttctaaaat ttcatcttgt gaacttttaa gataaaaatt gatttctgga
     3901 gcataaattt gtgctttttg tgctttttca ttagaaatta aaacttcttc atctttgcaa
     3961 ttttcccaaa tatttatctc atcgggcaag ggaataagat tttcattttg tatgaaaaca
     4021 aagtctttca ttgattttcc ttgatggtca atttgccaaa ttctatggta aaataaccaa
     4081 atattttctt aaggcttaag atgaacaaat ttagaacttt tccacaaatt ggaagcttga
     4141 ttgatgatga gagtttaaaa gaatatcctt tttatttaag atcttatttt tgcaaaagtg
     4201 ttgtcgctaa actcaaggcg aatataagcg aagatttgct agataaaaat actattttag
     4261 aaaaaataca gcaagaaatt caaaaacatt tacgcaaaga tttacaaagt gtcattaatg
     4321 ctacgggtgt ggttattcat acaaatttgg ggcgtagtgt tattgatgag agtatttttg
     4381 aaaagtccaa agatgtgctt tgtaattatg ctaatatcga atttgactta gaaagcggta
     4441 aaagaggaag tcgttatgcc ttggtgcttg aaaaacttaa aatgcttttt gaatgcgaag
     4501 atgctttggt tgtaaataat aacgccgcag cagttttttt ggtacttcat tctctttgtt
     4561 ttgacaaaga acttgtaact tcaaggggtg agcttgttga aattggcgga agttttcgtg
     4621 tgagtgaagt gattaaagct gcaggagtaa agctttgtga agtaggtacg agcaataaaa
     4681 cgcatttaaa agattatgaa aaagctataa acgaaaatac taaaatgctt ttaaaaaccc
     4741 ataaatctaa ttttgctttg attggttttc atagcgaggt tggcatcaag gatttaggaa
     4801 atttggctaa agaaaaagga cttttgagtt attatgattt aggttcgggt tggtgtgaga
     4861 atttaaatcc aaaactaata aaaaatgagc ctaaaatcaa agatttgata aagcattgcg
     4921 atattttgag ctttagtggg gataagcttt ttggtagtgt gcaagctgga attatactgg
     4981 gtaaaaaaga attgattgat aaaattaaag aaaatcaact gctaagaatg ctaagagtag
     5041 ataaaatcac acttgctttg ttaaatgaaa gtcttaagat ttatcttgaa aaagattatg
     5101 aaaaaatcac aagtttaaag cttttaaatg atgaaatcgc tcatattaaa gaaaaagctt
     5161 taagggtaca aaatgaaatt cagattaaaa gtgaattgaa aatgagtaaa agtttggtag
     5221 ggggtggttc tatgcctgat aaaactttag aaacttatgt tttagctttt aatggcaatg
     5281 ctttaaaact gcaagaaaaa tttagagcaa aaaatatcat aggtcgcata gaaaatgaag
     5341 cttttgtgct ggattttagg acaattagag aaaaagattt atcaaaatta attcaaatta
     5401 tcaatactat ggaaaattta tgaattcgct attaattggt actgcagggc atattgatca
     5461 tggaaaaact tctttgatta aagctataaa tggttttgaa ggagatagtt taaaagagga
     5521 aaaagaaaga caaattacca ttaatttaag tttttctaat ttaaactata agcaaaaaca
     5581 cctttctttt attgatgtgc caggtcataa agacttggtt aaaacgatga taagcggggc
     5641 ttttggtttt agtgcttgtt tgtttgtagt tgatatcaat gagggcttaa aagaacaaag
     5701 tatagagcat ttagaagtac ttgaactttt aggtgtcaaa gatattatct tggtgcttag
     5761 caaatgcgat ttatgtgaaa atcctaagga acaagagcaa aaaattctaa actcacttga
     5821 gtttatacct atgaaagtgt ttcacacttc gataaaggat caagagagca ttgagcgctt
     5881 aaaaaattat cttttaaatt tagaatgtaa gaatgctaat gcaaatcttg tttttcgtta
     5941 ttatatcgat agggtttttt ctttaaaagg tataggaact atagttactg gaagccttaa
     6001 tgagggcaaa atttccctca atgaaaaaat catttgtctt gacaatcaaa aagaacttgt
     6061 ggttaaaaat atacaaaatc atgaaagtaa ttttgctgaa atttcagctt ttaaccgtgt
     6121 ggctttgagc ttaaattgtg attataaaga attaaaaaaa ggttatgttt taagtaaaaa
     6181 aggttttttt aagggcttta aagaatgtga tgttttgatt aaagctaaaa gattaaaaaa
     6241 tgaaaaaatg cttttttgcg tgggtgcaaa aagcatagag tgcaagataa gcattttaaa
     6301 agagttagaa aataatgaat tttttgctca tcttgaattt gaaaaaaatc tttttttatg
     6361 ttttaatgaa aaatttattt tattgcaaaa taatcgtgtt gtgggcggag gagaggtttt
     6421 aaatcctgtg agtgagcctt tgaaaaagga gcaaaaaaac aaatttttaa tgcttttgaa
     6481 aaataaagaa ttaaaaaaag ctttcgaatt tctaaaaaat acgcataaat atggctttgg
     6541 cttgctttca agttatcaaa gatttaagtt aagtcatgaa gaagctttga atttagccaa
     6601 agaattaaat ggagttttta tagatgaaaa aaatcttaat atttataatc tcttagcctt
     6661 agatgagctt aaaaaattca tttcttttat acttgaaaaa aatccttatg ccatgctttc
     6721 agcaagctct ttagctctaa gacttccttg ggctagtgcg gaattttgtg aatttggact
     6781 tcaaaatcta tcaaatttac ttgaatttga aaagggagtg tattttaaaa aaggaattaa
     6841 ttatgaaaag cttagggaaa aaaacaacga tgagctatac aatatactta aaaaacaagg
     6901 cataaaacct caagcacctt ataatttata cgaattttta gaattagaca gaaaaagtgg
     6961 agatgaaatt ttaaaaaaac ttaccaagca aaatcgcgtt ataagacttt ctcataatct
     7021 ttttatagaa aaaaatgcct tagataagct tatgcaagag tgcttagaaa ttttaaagag
     7081 tcaaagcctt gatatacaaa gtatgaaaga gcgttttaat ctttcaagaa aatatgccat
     7141 agcttattta gaatatcttg ataaagatga gagggtgcaa aaaaaggatg aaaaaa
//
LOCUS       DBBXRO010000085         7152 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.086, whole genome shotgun sequence.
ACCESSION   DBBXRO010000085 DBBXRO010000000
VERSION     DBBXRO010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7152
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.086"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..625)
                     /locus_tag="ACJFEZ_001329"
     CDS             complement(<1..625)
                     /locus_tag="ACJFEZ_001329"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HGG0917442.1"
                     /translation="MQFLYHKQAGEEILKLKGEEFAHLKARRIKENEILSLRNLEDDF
                     IYEYKISNLDRNSCLLYFLHKHFKSHPQSELDLALAVIDTKILEKTLPFLNELGVKKL
                     HLVFTEFSQRNFKLDFERLEKIIISSCEQCGRSHKMQIQSYKNIQEFSKVFPDAVLVD
                     FEGEVKEFDKTRLYFIGPEGGFSPKEKQMFKEKICLKVPNILRSQSAA"
     gene            complement(626..1033)
                     /locus_tag="ACJFEZ_001330"
     CDS             complement(626..1033)
                     /locus_tag="ACJFEZ_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917443.1"
                     /translation="MDKSYEFFLALHLYSLYASGFLMFFYLVLTQGNFKTEFIFIRRI
                     RLFLPIYYVFLALMLFTGSLLLAIKQFQTHLNLWLMIFSWIFIFALAIFHFIQFKKAR
                     RLRRYITFRRISFMILFCELVLLILPFLTGKYL"
     gene            complement(1034..1456)
                     /locus_tag="ACJFEZ_001331"
     CDS             complement(1034..1456)
                     /locus_tag="ACJFEZ_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0917444.1"
                     /translation="MGKNLSILISLFAVLFLNACSDDKEFNHKNQNTTEEIVQIEQND
                     EKTEFSDTNLPLPVDDEASISEDYDVNPSVINSLYKQKCATCHGEKGEVKTKKGIAIK
                     NLSSEKFIQRLQNLKDEAHNFLTQEQRENLAKYISKEK"
     gene            complement(1456..2037)
                     /locus_tag="ACJFEZ_001332"
     CDS             complement(1456..2037)
                     /locus_tag="ACJFEZ_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl tetrahydropterin synthase family
                     protein"
                     /protein_id="HGG0917445.1"
                     /translation="MIIRKLFEFENAHIVRFCSSSRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTHMRQIIDSFDHAITLFNQDDESYLNEMKKYSQRWISLPVNVSAEN
                     FCRVFFILIDALLKQTKMINGEQGVNLQSIIVHETRTGYAQGFKEDAYSPTMPKITLE
                     DIEFSPAIKAEWNDIEFYDKLKNLHIFTNPKEV"
     gene            complement(2034..2777)
                     /locus_tag="ACJFEZ_001333"
     CDS             complement(2034..2777)
                     /locus_tag="ACJFEZ_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HGG0917446.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCSGFGVKLIKNG
                     KTLKGCDTIRAVFTKEFNEEYEILNASELFKRVLDLKKDFNPIVVITGGEPLIHHENP
                     EFIDFIQALLKNNFEVHFESNGSIELDFEKYPFYKECVFALSVKLQNSGMGKEKRLNF
                     NALKGFKHYAKDSFYKFVLNSSQLESLSLEILEILEKAPNEIFCMPMGENEQNLKQNA
                     LKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(2780..3742)
                     /gene="moaA"
                     /locus_tag="ACJFEZ_001334"
     CDS             complement(2780..3742)
                     /gene="moaA"
                     /locus_tag="ACJFEZ_001334"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HGG0917447.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFNHQPKENLLS
                     FEELFLFVKVAIDEGIEKIRITGGEPLLRKDLSVFIKMINDYKKDLDLAITTNGFLLK
                     DFAKDLKDAGLKRLNISLDTLESKKAKILAQKDVLDSVLAGIDEALSVGLKVKLNTVV
                     LKGLNDDELIPLLEFAKSKNIQIRFIEFMENIHAYGKLQGLKRDEIIQILSQKYQVKL
                     IKKAEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAANILQEVLRNKPEKNRWSVVDNETSSRAFYQTGG"
     gene            complement(3758..4276)
                     /locus_tag="ACJFEZ_001335"
     CDS             complement(3758..4276)
                     /locus_tag="ACJFEZ_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917448.1"
                     /translation="MSNDVLYLVFMIVLLVAILAYMNIKDKESSAKINKLQGVVEDIT
                     KELHYLRKELGVKDEGDQEEEDYKITLLKEEIQITLEKQISAKITPVLRTLKTMEHII
                     EDFQNEQQNRILNLEQKAQSMTKLTPNYDTEEQKIVDLFKEGKSIEQIAKDLRIGTGN
                     VELVLKFKQLIK"
     gene            complement(4269..4769)
                     /locus_tag="ACJFEZ_001336"
     CDS             complement(4269..4769)
                     /locus_tag="ACJFEZ_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917449.1"
                     /translation="MEISLFKAGFEASLECCDIENNHFLQEYLKLGAISQLSKWKKLA
                     LRVDFDEGEKIIFDLLLSLKEDILRLEDSLDKNKDLLVLKQKGVVESLNFEYLNFLDE
                     ILEEGKEYYIRFDLNNQKMAIFAKAQNKKLAQIIKIKPEDRIAFDAFVVQLQRDMIRN
                     KKDKNE"
     gene            complement(4760..5644)
                     /gene="mqnP"
                     /locus_tag="ACJFEZ_001337"
     CDS             complement(4760..5644)
                     /gene="mqnP"
                     /locus_tag="ACJFEZ_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis prenyltransferase MqnP"
                     /protein_id="HGG0917450.1"
                     /translation="MNTIWNKFKDILELVVFKHSIFALPFLFSSMIVASKLVNDSAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIIL
                     NAIIFILCSYFINTLAFYLSFPVLFVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     VMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKVGLHSIPAKFGSKATLFISAF
                     CHVLAVLFWLLFVWQVWGVALGNIALFGVIISGIILAFEHKIVHKNFAHIDKAFFTLN
                     GYLSIIFFIFIWVDLVWK"
     gene            5716..6585
                     /gene="miaA"
                     /locus_tag="ACJFEZ_001338"
     CDS             5716..6585
                     /gene="miaA"
                     /locus_tag="ACJFEZ_001338"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HGG0917451.1"
                     /translation="MFFQIALIGTTASGKTYIANALAKEFNAVVLSLDSLCVYKEINI
                     ANAKPSKDELANLNYFGVNLLSVDEHFNIELFIREYQKAKEFALINDLPLIIVGGTGF
                     YLKTMIDGLSQKIQDTTSTLSNDEIYALLLKIDPAYKIEKNDTYRLKKWLSIYESTNE
                     IPSDFLKKTQKDGVLKDIEIYELVWDREILRKRIEARTKEMIDNGLIEEARMLFSNFD
                     NNLKALNSIGLKECKEYLENQISLKELESLISIHTSQLAKRQRTFNKKFQSTPLEFSK
                     ALELLRNKFLAKE"
     gene            complement(6571..7134)
                     /locus_tag="ACJFEZ_001339"
     CDS             complement(6571..7134)
                     /locus_tag="ACJFEZ_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HGG0917452.1"
                     /translation="MDFYSLILLSCALAMDAFAVSLCKGFSVKKLNLKHYIITGVYFG
                     GFQALMPAIGYAIGITFASFIASIDHWIAFVLLSLIGLKMIKESFENENCDTNSNQFG
                     FKIMFALAVATSVDALAIGVSFAFLDVDLFLALFLIGSITFILCAIALELGNKFGTRF
                     RNKAEFLGGAVLIILGIKILVEHLFFS"
BASE COUNT         2568 a         1210 c          911 g         2463 t
ORIGIN      
        1 tggcagcact ttgacttctc aaaatattag gaactttaag gcaaattttt tctttaaaca
       61 tttgtttttc tttggggcta aatccaccct ctggacctat aaaataaagt cgagttttat
      121 caaattcctt tacctcacct tcaaaatcaa ccaaaacagc atcaggaaaa accttgctaa
      181 attcttgtat atttttatag ctttgaattt gcattttgtg acttcttccg cactgctcac
      241 aagatgaaat gatgattttt tctaatctct caaaatcaag tttaaaattt ctttgagaaa
      301 attcagtaaa aacaaggtgt aattttttaa ctccaagttc atttaaaaaa ggaagtgttt
      361 tttccaaaat tttagtatca ataaccgcca aggctaaatc aagttcgctt tgtggatgag
      421 acttaaaatg cttatgtaaa aaataaagca aacaagaatt acgatctaaa tttgaaattt
      481 tatattcata aataaaatca tcctctaaat ttcttaaaga taaaatttca ttttctttaa
      541 ttcttcttgc tttcaagtga gcaaattctt cgcccttaag ttttaaaatt tcttcccctg
      601 cttgcttgtg gtataaaaat tgcatttata aatatttacc tgttaaaaaa ggtaagatta
      661 aaaggacaag ttcacaaaat aaaatcataa aactaatgcg tctaaaagtt atatagcgtc
      721 ttaatctacg agctttttta aattgtataa aatgaaaaat agctaaagca aaaataaaaa
      781 tccaagaaaa aatcatgagc caaagattta aatgtgtttg aaattgttta atcgctaaaa
      841 gcaaagaacc tgtaaaaagc atcaaggcta aaaaaacata gtatataggt aaaaacaaac
      901 ggattctacg gataaatata aattcggttt taaaatttcc ttgagtcaag acaagataaa
      961 aaaacattaa aaatccacta gcataaagac tataaagatg tagagctaaa aaaaattcat
     1021 aacttttatc catttatttc tccttgctga tatattttgc taaattttct ctttgttctt
     1081 gggttaagaa attatgagct tcatctttta aattttgaag tctttgaata aatttttcac
     1141 tgcttaaatt tttaattgca ataccttttt tggttttaac ttctcctttt tctccatgac
     1201 aagtagcgca tttttgttta tataaagaat taataacact tggatttaca tcatagtctt
     1261 cgctgatact ggcctcatca tcaaccggta agggcaaatt cgtatcgcta aattcggttt
     1321 tttcatcatt ttgttcaatt tgtactattt cttcggtagt attttggttt ttgtgattaa
     1381 attctttatc atcactacaa gcgtttaaaa ataaaactgc aaataagctt attaaaatac
     1441 ttaagttttt acccattaaa cctccttagg atttgtaaaa atgtgtaaat ttttcaactt
     1501 atcataaaat tctatatcat tccattctgc ttttatagca ggtgaaaatt ctatatcttc
     1561 aagtgtgatt tttggcatag taggactata agcatcttct ttaaaccctt gtgcatagcc
     1621 tgttcttgtt tcatgtacta taatgctttg caaatttaca ccttgttcgc catttatcat
     1681 cttggtttgt tttaataaag catcgattaa aataaaaaat acacggcaaa aattttcagc
     1741 actgacatta acaggcaagc ttatccagcg ctgcgagtat tttttcattt catttaaata
     1801 agattcatca tcttgattaa aaagtgtaat agcatgatca aagctgtcaa taatttgacg
     1861 catatgggtt tttaaaagcc caaagtcata aaccattccc gcattatcta aatacttgct
     1921 ttcaagtaaa acctcaacct tgtaagaatg tccatgaata ctacttttac aacgacttga
     1981 agaacaaaat ctaacaatat gagcattttc aaattcaaat aattttctta taatcataca
     2041 ccctctttat cattccaaag acgaatatgg attctatcag aataattata accattttta
     2101 atacaaaact cggctatttt taaagcattt tgttttaaat tttgctcatt ttctcccata
     2161 ggcatacaaa aaatttcatt aggcgctttt tctaaaattt ctaaaatttc tagtgacaaa
     2221 ctttctaatt gactggaatt taaaacaaat ttgtaaaagc tatctttagc ataatgctta
     2281 aagcctttaa gggcattgaa atttaatctt ttttctttac ccatcccgct attttgaagc
     2341 ttgacactta gagcaaaaac acattcttta taaaaaggat atttttcaaa atcaagctct
     2401 atgcttccat tgctttcaaa atgcacttca aaattatttt tcaataaagc ttggataaaa
     2461 tcgataaatt ctggattttc atgatggatt aagggttctc ctccagtaat caccacaata
     2521 ggattaaaat ctttttttaa atcaagcacg cgtttaaaaa gttcacttgc atttaaaatt
     2581 tcatattctt cattaaattc tttagtaaaa actgccctta tagtatcgca acctttaaga
     2641 gtttttccat ttttaataag ctttacccca aagcctgagc aattaaaatt acatcctgca
     2701 aaacgcataa aaatagctaa ttttccatta tatttgcctt ctccttgaat gcttaagaaa
     2761 ctttcaacaa gttgcaaaat taacctccag tttgataaaa agcacgagat gaagtttcgt
     2821 tatctaccac actccatcta tttttttcag gtttattgcg taatacttct tgtaaaatgt
     2881 ttgcagcggc tttaatatca ccttttcgaa ccgcttcttt tatgcttaat gcttcatcaa
     2941 aataaaggca aggtattaac aagccttcag cacttaagcg tatgcgattg caagaatcgc
     3001 aaaattcatg gctatgagga tctataattc caaattcata atcatctgcc ttgtaaatac
     3061 tcacaggtgc tttttcagct tttttaatga gttttacttg atatttttga cttagaattt
     3121 gtatgatttc atctcttttt agaccttgta attttccata agcatgtata ttttccataa
     3181 attcaataaa gcgaatttga atgtttttag attttgcaaa ttccaaaaga ggtatcaact
     3241 catcatcatt taaacccttt aacacaacag tgtttagctt gacttttaaa cctacgctta
     3301 aggcctcatc aatccccgct aagacactat ctaaaacatc tttttgcgcg agaatttttg
     3361 cttttttgct ttctagggta tcaagagaga tatttaaacg cttcagtcca gcatctttaa
     3421 gatctttagc aaaatctttt aataaaaaac cattcgttgt aatggctaaa tcaagatctt
     3481 ttttataatc atttatcatt tttataaaca cacttaaatc tttacgcagt aaaggctctc
     3541 ctccagtgat acgaattttt tcgatccctt catcaatagc cactttaaca aacaaaaaaa
     3601 gctcttcaaa gctcagtaaa ttttctttag gttgatgatt aaaaggaatt tttggcatac
     3661 aataaagaca acgaaaatta catctttggg ttactgatat tctaagataa ttaatctttc
     3721 tgccaaactg atcaataagc attgcctctc ctagtgatta tttgataagt tgtttaaatt
     3781 ttaaaacaag ctcaacattt ccagtgccta tacgcaaatc ttttgcaatt tgctctatac
     3841 tttttccctc tttaaataaa tccacaattt tttgctcttc ggtatcataa tttggtgtta
     3901 attttgtcat actttgtgct ttttgttcca aatttaaaat acgattttgt tgctcatttt
     3961 gaaaatcttc tataatatgc tccatggttt ttaaagttct taaaacgggg gtaatttttg
     4021 cactgatttg tttttcaagc gtgatttgaa tttcttcttt caatagagta attttatagt
     4081 cctcttcctc ttgatcgccc tcatctttta cgcctaattc tttgcgtaaa taatgaagtt
     4141 cttttgtaat atcttcaacc acgccttgga gtttgtttat ttttgcacta ctttctttat
     4201 ctttgatatt catataagct aatattgcaa ccaaaagtac gatcataaaa actaaataaa
     4261 gcacatcatt actcattttt gtccttttta tttcttatca tatctctttg caattgaacc
     4321 acgaaagcat caaaagctat tctatcttcg ggttttattt tgataatttg agctaatttt
     4381 ttattttgag ctttagcaaa aatggccatt ttttgattat taagatcaaa tcttatgtaa
     4441 tactcttttc cttcttctaa aatctcatct aaaaaattta aatattcaaa atttaaagat
     4501 tcaaccacgc ctttttgttt gagtactaaa agatctttat ttttatccaa agaatcctca
     4561 agtcttaaaa tatcttcttt taagctcaaa agtaaatcga aaatgatttt ctcgccctca
     4621 tcaaaatcca cacgcaaggc gagttttttc cattttgaaa gttgagaaat ggcacctaat
     4681 tttagatatt cttgtaaaaa atggttattt tcaatatcac aacactctaa agaagcttca
     4741 aatcctgcct taaaaagact tatttccata ctaaatcaac ccaaataaaa ataaaaaata
     4801 ttatacttaa atatccattt aaagtaaaaa acgctttatc aatgtgagca aaatttttat
     4861 gtacaatttt atgttcaaaa gccaaaataa taccgctgat aatcactcca aataatgcaa
     4921 tatttccaag cgctactccc caaacctgcc aaacaaaaag tagccaaaat aatactgcta
     4981 atacatggca aaaagccgag ataaataaag tcgccttaga gccaaattta gcagggatag
     5041 aatgaagtcc tactttttta tcatactcca tatcttgtaa agagtaaagc aaatcaaatc
     5101 cagccgtcca aaaagttacc cctaagcata aaatcacact ataaatgtga atttcaccca
     5161 tgactatcac actgcctgca ataggtgcaa gtcctaaaca aaatcctaaa actaaatgcg
     5221 ctaaagaact aaagcgttta aaagcagaat aaattgccaa tacaaaaagc acaggaaaag
     5281 aaagataaaa agccaaagta ttgataaaat aagaacacaa tataaaaata atcgcattaa
     5341 ggataataaa aatccaaacg cttttgcgtc ctatttttcc actgacatta gggcgatttg
     5401 cacagcgagg attgtcttta tcgatatctt catccattaa acgattggtc gccatagcaa
     5461 aatttcttgc acttacagca caaataatac ccaaaatcaa agccttaaaa ccaaaccaag
     5521 cgctatcatt aacgagtttt gaagccacta tcatagatga aaataaaaag ggcaaggcaa
     5581 aaatagaatg cttaaatacc acaagttcca aaatatcttt aaatttattc caaattgtgt
     5641 tcatgttttt cactttaaaa tattttttgc tatgatttta ctaaaatttt cataaatttt
     5701 aggataaatt atcacatgtt ttttcaaatc gcacttatag gaaccactgc cagtggaaag
     5761 acttatatag caaatgcctt agctaaagaa tttaatgcag tggttttaag ccttgatagt
     5821 ctttgtgttt ataaagaaat caatatagcc aatgccaagc catctaaaga tgagcttgca
     5881 aatttaaact attttggagt aaatttatta agtgttgatg agcattttaa tatagaatta
     5941 tttataagag aataccaaaa agcaaaagaa tttgctctta taaatgattt gcctttgatt
     6001 atagtaggtg gaacgggttt ttatctaaaa acgatgatag atggtttaag tcaaaaaatt
     6061 caagatacga ctagcacttt aagtaatgat gaaatttatg ctcttttatt aaaaattgat
     6121 ccggcttata aaatagaaaa aaatgatact tatcgtctta aaaaatggct aagtatttat
     6181 gaaagtacaa atgaaattcc tagtgatttt ttaaaaaaga cacaaaaaga tggggtgctt
     6241 aaggatattg aaatttatga gcttgtatgg gatagagaaa ttctaagaaa acgcatagaa
     6301 gcaagaacaa aagaaatgat tgataatggg cttatagaag aagcaagaat gcttttttca
     6361 aattttgata acaatcttaa agcattaaat tctatagggc ttaaggaatg caaagagtat
     6421 ttagaaaatc aaatttcttt aaaagagctt gaaagtttga ttagtataca tacatcacag
     6481 cttgccaagc gtcaaagaac ttttaataaa aaattccaaa gcactccttt ggaattttct
     6541 aaagccctag agttacttag aaataaattt ttagctaaag aataaatgct caactaaaat
     6601 ttttatccct aagattatca aaacagctcc ccctaaaaat tcagctttgt ttctaaagcg
     6661 agtgccaaat ttattgccta attctaaagc aatagcacat aagataaaag taatagagcc
     6721 tattaaaaat aatgccaaaa acaaatcaac atctaaaaag gcaaagctaa ctcctatagc
     6781 taaggcatca acacttgtag ctacagctaa ggcaaacatg attttaaatc caaattgatt
     6841 tgaattggtg tcgcaatttt cattctcaaa agattcttta atcattttta gcccaattaa
     6901 agaaagtaaa acaaaggcta tccaatgatc aatacttgca ataaaagatg caaaagtgat
     6961 gcctatagca tatccaatag ctggcattaa agcttgaaaa ccaccaaaat aaactcctgt
     7021 aataatatag tgttttaaat tcaatttttt aacactaaat cccttacata aagatacagc
     7081 aaaagcatcc atcgctagtg cacaggataa aagaataaga ctataaaaat ccatgacaac
     7141 tcctatgaaa ga
//
LOCUS       DBBXRO010000086         7100 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.087, whole genome shotgun sequence.
ACCESSION   DBBXRO010000086 DBBXRO010000000
VERSION     DBBXRO010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7100
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.087"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            90..1259
                     /locus_tag="ACJFEZ_001340"
     CDS             90..1259
                     /locus_tag="ACJFEZ_001340"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HGG0917453.1"
                     /translation="MLTQRSQVLEESITLAITALANELKAKGEDVISFSAGEPDFDTP
                     QTIKNAAIAAIEKGCGKYTAVAGIADVLKAIQNKLKKDNNLSYETSEIITNVGAKHSL
                     FECIECLVEEGDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKINAEQLKKAIT
                     PKTKILMLNSPSNPVGSIYNKEELLSIAKVLEGTKIIVLSDEMYEKLRYDGFEFVAFA
                     SVSEDALNRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDEDIEKMRQAFEKRRDLALNMLHQIPNISVYKPEGAFYLFVNTQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGMDGYFRLSYATSDELIKKGIERIANFIKNYK"
     gene            complement(1369..1710)
                     /locus_tag="ACJFEZ_001341"
     CDS             complement(1369..1710)
                     /locus_tag="ACJFEZ_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HGG0917454.1"
                     /translation="MKITQWNKADFSPKEVKINVLIDDEHSKEIQILLAKDSVMKEHK
                     APFAIRVQVLSGKIWFEVENEKFEFNTLDMISLEANVPHSLGGLEDSVIRLSLNKLDK
                     VQRVNAVLKKP"
     gene            complement(1780..2802)
                     /locus_tag="ACJFEZ_001342"
     CDS             complement(1780..2802)
                     /locus_tag="ACJFEZ_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HGG0917455.1"
                     /translation="MNLSFKTFDLSSKERQKAKKVQGKKYEIFLNENPQTHNAFKVSF
                     REVLRYYYLYPKNAKATFKLPFFKPNLKYVRTPHITWLGHSSLFVSYKNYKILIDPIF
                     NTHASPFSFINKAFKNAPVYNANDFDEIFAVIITHSHFDHLDEKSVKTLKDRAKFFIA
                     PLKVGNYLKSYGVSEKKIIELDWWSGVEFDDLRIVATPAQHSSSRGDGLNKTLWASFV
                     MEFLSADKRVFFSGDGGYFTHFKKIGAYFGGFDLVCLESGQFNAAWPFSHSFPDQILK
                     EAKDLNAKALMPIHWGRFLAGTHAWNGVVEYLYENSNLPLITPKMGEAYEVGSEFEQD
                     FWWKEG"
     gene            3003..3749
                     /locus_tag="ACJFEZ_001343"
                     /pseudo
     CDS             3003..3749
                     /locus_tag="ACJFEZ_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780055.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
     gene            complement(3809..5680)
                     /gene="dnaK"
                     /locus_tag="ACJFEZ_001344"
     CDS             complement(3809..5680)
                     /gene="dnaK"
                     /locus_tag="ACJFEZ_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HGG0917456.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVKDAGLDKNEIKEIVMV
                     GGSTRVPLVQEEVKKAFGKELNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLNELGEKVADSDKENIQKALDDL
                     RETLKNQNASKEEIEAKMKALSEVSHKLAENMYKKDEPNAANDKKKKDDDVIDAEVE"
     gene            complement(5703..6233)
                     /gene="grpE"
                     /locus_tag="ACJFEZ_001345"
     CDS             complement(5703..6233)
                     /gene="grpE"
                     /locus_tag="ACJFEZ_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HGG0917457.1"
                     /translation="MSEQKQEIENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAINVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            complement(6230..7024)
                     /locus_tag="ACJFEZ_001346"
     CDS             complement(6230..7024)
                     /locus_tag="ACJFEZ_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HGG0917458.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQNFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNAKFIVLDFKEEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
BASE COUNT         2298 a         1310 c          975 g         2517 t
ORIGIN      
        1 tcatttttac attattaatt tttaattaaa tttactacat aagtgcgttt ttttgctaaa
       61 attagacaaa aaattcaaaa ggacaacaga tgttaaccca aagatcacaa gttttagaag
      121 aatccatcac tctagcaatc actgcgcttg ctaacgagtt aaaagctaag ggtgaagatg
      181 tgatcagctt ctccgcaggt gagcctgatt ttgacacccc acaaaccatc aaaaatgcag
      241 ctattgctgc catagaaaag ggttgtggta aatacactgc tgttgcagga attgctgatg
      301 tattaaaagc tattcaaaac aaactcaaaa aagacaataa tcttagctat gaaacaagtg
      361 aaattattac aaatgtaggg gcaaagcatt ctctttttga atgtatagaa tgtctagttg
      421 aagaaggcga tgaagtcatc attcctagtc cttattgggt gagctatcct gaaatggtta
      481 aatttgcagg tggaaagcct gtatttatcg agggtttaga agaaaatggc tttaaaatca
      541 acgcagagca gcttaaaaaa gccatcactc ctaaaactaa aattttaatg cttaattctc
      601 cttcaaatcc tgtaggctct atctacaaca aagaagagct tttaagtatt gctaaggttt
      661 tagagggtac aaagattatc gtattaagtg atgaaatgta tgaaaaactt cgctacgatg
      721 gctttgaatt tgtagctttt gcaagtgtaa gcgaagatgc tttaaatcgc actgtgacca
      781 tcaatggact tagtaaatgc ggtgctatgc ctggatggcg ttttggctat atggcaagta
      841 aaaacaaagc cttgatttca gctgttaaaa gacttcaagg ccaaagcact tcaaatatct
      901 gctctatcac tcagcacgct gccatacctg ccttaaatgg agaatgtgat gaggatatag
      961 aaaaaatgcg tcaagctttt gaaaagcgtc gcgatttagc cttaaatatg cttcatcaaa
     1021 ttccaaatat tagcgtctat aagcctgaag gagcttttta tctttttgta aatactcaaa
     1081 aaattgaaaa agattctatg aaattttgcc aaaaattact agaacaagaa aaagttgctg
     1141 tagttccagg tatcggtttt ggcatggatg gatattttag actttcttat gctacaagcg
     1201 atgaacttat caaaaaaggc atagaaagaa tagcaaattt tattaaaaat tataaataat
     1261 tctaggttta aaacctagaa ttgctaactt tgttaggcaa tcaaataaaa ttcaaatgac
     1321 ccaaatttaa actttctcaa acccaaattt caaaataaaa ccaaaaaatc aaggtttttt
     1381 aagcactgca tttactcttt ggactttatc tagtttattt aaactaagtc ttatcacaga
     1441 atcttctaat cctcctaaag aatgaggcac atttgcttct aagcttatca tatctaaagt
     1501 attgaattca aatttctcat tttctacttc aaaccaaatt ttaccactta aaacttgcac
     1561 gcggatagca aagggtgctt tatgctcttt catcacgcta tctttagcaa gtaaaatttg
     1621 aatttccttg ctgtgctcat catcgattaa aacattgatt tttacttctt tggggctaaa
     1681 atccgcttta ttccattgag tgattttcat aaaatctcct ttttaatttt ataagattgt
     1741 aacaaaaatc aaaacacaga ctataaactt gtgttaattt tatccttctt tccaccaaaa
     1801 atcttgctca aactcacttc ccacctcata agcttcgccc atttttggtg taatcaaagg
     1861 caaatttgaa ttctcataaa gatattctac cactccattc cacgcatgag ttcctgctaa
     1921 aaaccttccc caatgtatag gcattaaagc ttttgcattc aaatcttttg cttcttttaa
     1981 aatttgatca ggaaaagaat gcgaaaaagg ccaagcggca ttaaattgac cgctttcaag
     2041 acaaactaaa tcaaaaccac caaaataagc cccgattttt ttaaaatgtg taaaatatcc
     2101 tccatcgcca ctaaaaaaca cccttttgtc cgcgcttaaa aattccatca caaaagaagc
     2161 ccaaagagtt ttatttaacc catcgcccct gcttgaacta tgctgcgcag gcgttgcaac
     2221 aatccttaaa tcatcaaatt ccaccccact ccaccaatca agctctatga tttttttctc
     2281 actcactcca taacttttta gataatttcc tacttttaaa ggcgcgataa aaaatttagc
     2341 cctatctttt aaagttttca cgcttttttc atctaaatga tcaaaatgag aatgagtgat
     2401 aatcacggca aaaatttcat caaaatcatt ggcattataa acaggtgcat ttttaaaagc
     2461 tttattaata aaagaaaaag gtgaagcgtg agtgttaaag ataggatcga ttaaaatttt
     2521 atagttttta taactcacaa aaagcgatga atgtccaagc caagtgatgt gcggagtacg
     2581 aacatacttt aaatttggct taaaaaaagg aagtttaaaa gtcgccttag catttttagg
     2641 gtaaagataa taatacctca aaacttccct aaaagacact ttaaaagcat tatgtgtttg
     2701 gggattttca ttaagaaaaa tttcatattt tttaccctgc acttttttag ctttttggcg
     2761 ttctttactc gaaagatcaa aggttttaaa tgacaaattc aattttttcc ttttttatgt
     2821 ttattaaaat tatatccaag aaatttttag attaatttta ttttacacaa gtttttggtt
     2881 tacttgtgtt aaaatgtcca aatcaaatat tggataaaat gatgtaaaaa taaaatttat
     2941 ataaactaga caaaatactt caagaaattg attttatatt taaacaaacc aaaggcgagc
     3001 ttatgcaagc tttaaaaaat gaaatcaaac aaaaagctat tttcatgtca ctaatcaaca
     3061 ttaaagaaac gataaaaaat atccaagata gtgcagatgc tgaagttatg gtaatttttt
     3121 gtgaagaaga tatgaaaaga ctctcaaaaa gtagaaatat tgcagcacat aatagtagcc
     3181 atggatttaa atatcgtaac aaatcttatt cgttacgatc tagcaagact taaacaaagt
     3241 attgttaatt ttaaaaataa tccaaacaat ttacatttta ttccaaaaga agaaaatgtc
     3301 aaaaaaaaga atactaaaac cactagaagt attaattatt tttttatttg catgcatttt
     3361 atcttgtatt atatttatta ccttttttta cttaacaagc cctccaaaag cataagacaa
     3421 gaaaattttt catataacac tttcatacaa attattttta ttcattagat ccttttattc
     3481 ttaacttacc acaagctggc agacaaaaat atacacactg caccattgat ttagaattaa
     3541 taaaagaaat ttctttagaa gattttacaa aaatttcacc cgttattaga gatactatta
     3601 ttcaaaccat tctagcaaaa gaaatacaag aaattgaatt ctctaatttc aaactagaac
     3661 ttcaaagaga attggttaaa aaaattaatg aaaaattagg caataagctg attaaagaat
     3721 tatattttag agattttatc atctcttgaa aatttttata aaattttcaa gccttttaaa
     3781 aaggcttgat taaagatctt agagagtttt attcgacttc agcgtcgatt acatcatcgt
     3841 cttttttctt tttatcattt gctgcatttg gctcatcttt tttatacata ttttcagcca
     3901 atttatgaga aacctcgctt aaagctttca ttttagcttc gatttcttct ttacttgcat
     3961 tttgattttt caaagtctca cgcaaatcat caagagcttt ttggatattt tctttatcgc
     4021 tatcagctac tttttctcca agctcattta gagatttttc cacttgatgc gccaagctat
     4081 cagctgcatt tctagcatct acagcttctt tgcgtttttt gtcttcttct ttgtgaagtt
     4141 cagcatcttt taccatgtta ttaatctctt cctcgctaag tccacttgaa cctgtgattt
     4201 tgatctcttg tgctttacct gttgctttat cttttgcaga aacagttaaa ataccatttg
     4261 catcgatgtc aaaagttact tcgatttgtg gcataccgcg tggtgctggt ggaattcctt
     4321 caaggttgaa atttcctaaa gatttattat cacgactaaa ttctctttcc ccttgtaaaa
     4381 cattgatagt tacagcactt tgattgtctt ctgcagttga gaaaacttgc tcttttttgg
     4441 ttggtatagt tgtacctttt tcgatgattt tagtcatcac accgcctaaa gtttcgatac
     4501 ctaaagaaag tggagttaca tcaagtaaaa gtacatcttt tacatcacct tttataactg
     4561 caccttgaat cgccgcaccg atagccacaa cttcatcagg atttacagat ttgttaagtt
     4621 cttttccaaa agctttttta acctcttctt gcactaaagg aacacgagta gaacccccta
     4681 ccataacgat ttctttaatt tcatttttat caagccctgc atcttttacc acttcattga
     4741 tcttagtgat agtttcagct actaaagaat caatcatacc ttcaaattta gctctagtaa
     4801 gttttttaac caagtgtttt gggccactcg catcagctgt gataaatggt aaattaatct
     4861 ctgtttcatt agctgaactt agctcttttt tagcattttc tgcagcttct tttaagcgtt
     4921 gtaaagccat aacatcattt ttaagatcta tacctgtttc atctttaaat tcacttgcta
     4981 gaaaatcgat aagcttgtta tcaaaatcat caccacctaa gaaagcatta ccacctgttg
     5041 ctaaaacttc tactacatta tcccctgttt caagcacggt aacatcaaag gttcccccac
     5101 ctagatcgta aactacgatt ttttcactat cttttttatc aagcccataa gctaaagctg
     5161 ctgaagtagg ctcgttgata attcttaata cattaagtcc tgcgatagtc cctgcttctt
     5221 tcgttgcttt tctttgtgca tcattaaaat acgcaggcac agtaatcacc gcatcagtaa
     5281 cactttcacc caaaaaagct tctgcatctt cttttaattt catcaaaact tttgctgaaa
     5341 tttcttgtgg ggtgtaaatt ttacctgcga tttctatcgc gcatgcacca tttctttcgg
     5401 tgatgtggta aggaagtcta tttttggctt ctttagccgc atcttcattg atcatcaaac
     5461 ccataattct tttgatagaa taaatagttt tttcagggtt tgttaccgct tggcgttttg
     5521 cgctatcgcc tactaaaact tcacctttat ctgtaaaagc aactactgaa ggagttgtgt
     5581 tttttccttc tttgtttggg attactttgc tctcgccgcg ttcatacaca gcaacacaag
     5641 aattggttgt tcctaaatct atacctataa ctttactcat tttttatcct ttttattaaa
     5701 atttattttg ctacactaac tttggttggg cggatcacgc gatcggctat tttataacct
     5761 ttttgaagca cttgaaccac ttcaccactt tgatgatttt cactatctac atgaaacatc
     5821 gcttcgtgta aattaggatc aaactctttt tcatctttga taagagccac tccatgtttt
     5881 tcaagttttt taagaaataa atctaaagtg ttttgcactc cttctttgat ttttaagcta
     5941 atttcatctt ggcattcgac attgatagct gcttctaaag catctaaaac atcaagcaaa
     6001 tcctttgcaa agctttcatt tgcataagcc atagcactta gcttttcttt ttccattctt
     6061 tttttaatat tttcaaattc agcgtttgca cgcatatatt tgtcttttaa ttcatcatag
     6121 tctttttgca atttgttttg ctcaacatct tcgatatttt gcaaattctc atcttgcaaa
     6181 tgttcagaat tttctgcgtt ttcattttca atttcttgct tttgttcgct catgccgcct
     6241 cctttatgta ttgtaatatc tttttataat ccgtataaac actacctgct aagataatat
     6301 ttacatcttc gcccaaaaac tgcgcatcca ccttaagccc cataaaaccc tctttaaata
     6361 agggttcaaa ttcaagactt tctttaaaat gacggtgaat ttgacaatct aagagcttaa
     6421 caaattcatc attttgataa atttgataag ctctttcttc attgcttcta tagcaaatca
     6481 aattttgtct taagctagct attttttcta caagatctat aaaatgaact ctcaaagcta
     6541 ttttttctat actagaaaga tcaagtccta taagactttg taaaaaattc cacgcttctt
     6601 tttcatattt taaaacgagc tcttcttctt taaaatcaag tactataaac ttagcattta
     6661 gatcaagtac ttctttaagt actaaacttc tacctccata aacaagacaa taaatttcaa
     6721 attccttgct tagttccttt aaaaagcttt catttttgat atgaatgttt ttatcttgct
     6781 ctttttccca aaaattttgc caataatttt gcatcgttaa aatagtagga attctaccgc
     6841 tacttatatg aagctgagtg atcaaaccct catcgctaag tcttttaaga taaacgcgta
     6901 tagtcgaagc aggtatgcaa aggtttgaat ttaattcatt agaaccaata ggtgcattat
     6961 ccaaaagata agtttgaata atagactcta aaatcaaatc ctttttatct cgacttttca
     7021 tcatattttc cttcatatct agcactctat tttttgattg ctagatatat tatacaacat
     7081 tgagtgttat tttgtcaagt
//
LOCUS       DBBXRO010000087         7092 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.088, whole genome shotgun sequence.
ACCESSION   DBBXRO010000087 DBBXRO010000000
VERSION     DBBXRO010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7092
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.088"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            37..279
                     /locus_tag="ACJFEZ_001347"
     CDS             37..279
                     /locus_tag="ACJFEZ_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HP0268 family nuclease"
                     /protein_id="HGG0917459.1"
                     /translation="MDLKLARNLINEEPKNISLAKIEEAVNQEGQKFFYFDKENSHKD
                     LIALVEHFEKKGLSVYHRTIRYGLDSNDFMYEVHIL"
     gene            276..1577
                     /gene="miaB"
                     /locus_tag="ACJFEZ_001348"
     CDS             276..1577
                     /gene="miaB"
                     /locus_tag="ACJFEZ_001348"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HGG0917460.1"
                     /translation="MSSKKLFIQTLGCAMNVRDSEHMIAELTQKDNYTLTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKSGAKIGVCGCTASHLGSEIFRRAPYVDFVL
                     GARNISKITQAVNTPKFMSVDIDYDESEFAFGDFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPLNIIYKEAQKAVDKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGY
                     TKEWYLDRALKLRELCPNVSISTDIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYS
                     KRPLTKAATMPNQIDEEIASNRLSTLQARHNEILDDIVKKQENKTFKVLFEELRAGNA
                     IVGRTDNNFLVQVEGSEELLGTFKEVKITNAKRMVLYGEII"
     gene            1561..2184
                     /locus_tag="ACJFEZ_001349"
     CDS             1561..2184
                     /locus_tag="ACJFEZ_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HGG0917461.1"
                     /translation="MGKSFKIAFIARLVFILQWLIFLTCKKTYKGDKVDQISNVILFW
                     HGRLALMPFAFRHFGKKGKKAYVMISHHRDGEQIARIIKLFGLDTVRGSTSKGASTAL
                     RSAFKILDENHDVVITPDGPRGPYHSISDGAVLLAQKKNVKIRILNYEARNFWEFKSW
                     DKMILPKPFTHLVYRLSEPLDISSLDKDQAKFFLLEHFKKIEQMDKF"
     gene            2193..3179
                     /locus_tag="ACJFEZ_001350"
     CDS             2193..3179
                     /locus_tag="ACJFEZ_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HGG0917462.1"
                     /translation="MLFLLKKILPQLFTSIILEDKKNILKTSIYKNHKLISSNEKTFD
                     KSEKLLEYVKTLNSKFLFYHTALFLNVKEQGLIPSKNDKDFERFNVGKMSLKSIALNN
                     ALIYTATEHIEYFNELFEDYGGLDFLYSPFAILYHNILKEKPNSDKITLYAYKHEHIL
                     TLIICRGIEILYGDIIFFEEELDLEFGHQEENLDNLGEDTLNDTEVTLDNFNETLEDK
                     LNALDQFDNILGNNENDSEFLDGKDKFDLEEMDQFGNDIELCRHIVTSIEKFYKDDKY
                     PSAFIDKALILSTKELDQSAIEFLEEETLLEIESKPINTLDSIIELMQKELQ"
     gene            3176..3700
                     /locus_tag="ACJFEZ_001351"
     CDS             3176..3700
                     /locus_tag="ACJFEZ_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917463.1"
                     /translation="MKSYSFIQPRKKPIFTLFDKIWFGLFSFGIVFIFAVYFLYLTQI
                     ALTHNFIEEQKEQVLQFQNKTQENGKLYDILLEQSKIANTFHTQNQAFKNSLKNLFDI
                     IVKTDGITLESIEQEENSLKLIGVTPTKEMFALLLETPLKSIFDQSFTTYYRLNNGWY
                     RFISISKQNSGVLQ"
     gene            3697..4215
                     /locus_tag="ACJFEZ_001352"
     CDS             3697..4215
                     /locus_tag="ACJFEZ_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917464.1"
                     /translation="MKDKSLEELNILKIVIYVLSFITVCTALILFLLLPVLKDYKQTH
                     LRKNSQAAIFNAAKAKLDTSENKISALRTENNKSLEQFEQQFNLTHFQNFLEKYFENI
                     QITELKLDKKEKYLTHRINIRASINNPRRLYDFIDALAQYNNLVKIDYPMTLKASDHG
                     IMINLNVQIYSN"
     gene            complement(4207..5499)
                     /gene="thiC"
                     /locus_tag="ACJFEZ_001353"
     CDS             complement(4207..5499)
                     /gene="thiC"
                     /locus_tag="ACJFEZ_001353"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HGG0917465.1"
                     /translation="MKTQMLYAKEGIFTKEMEIVAQKEEVSKDFLLANIACGKIIIPA
                     NINHKSLDPNGIGLGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFGIEAIMDLSNYG
                     KTSRFRDELIAVSKAMIGTVPVYDAVGFLEKDLKQISARDFLDVVYHHAKSGVDFMTI
                     HAGINSRAARVFKESKRLTNIVSRGGSVLYAWMAMKEAENPFFEYYDDLLEICLKYDV
                     TLSLGDALRPGSTHDASDAAQISELIELSLLTQRAWEAGVQVMIEGPGHMAINEIEAN
                     MQIEKRICKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAAAGADILCYVTPAEHLRL
                     PNLNDVRDGIVATKIAAHAGDLAKLPKERKRDDEMSKARQDIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQVLKGENVSLV"
     regulatory      complement(5544..5648)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(5671..6432)
                     /locus_tag="ACJFEZ_001354"
     CDS             complement(5671..6432)
                     /locus_tag="ACJFEZ_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HGG0917466.1"
                     /translation="MSLQQVDQIISILSKQSKPYEWVIKEFKKIEELKDYELDLETFE
                     LLGLGLTLDKNNIFTLQTRTKKIKEEIFCIVDIESTGGIKNGQILEIGAVKIKNLQEI
                     DRFSSLVQVKEIPENITELTGINLDMVKDAPSLTKVLNDFRLFLKDSIFVAHNVRFDY
                     GFISKALNECGFGILLNRRICTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDAL
                     AAAEIFKHCLGKLPYHIKTTEELINFTKTSRIKQK"
     gene            complement(6429..7076)
                     /gene="rpe"
                     /locus_tag="ACJFEZ_001355"
     CDS             complement(6429..7076)
                     /gene="rpe"
                     /locus_tag="ACJFEZ_001355"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HGG0917467.1"
                     /translation="MYVAPSLLSANFLKLEEEIKAIDEAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTITEIPLDVHLMVKDVGKFVDLFIPIKPKFISFHIESEAHPIRLCEYI
                     RSQGIHPAIVLNPHTPINSIKHMIDFVDMVLLMSVNPGFGGQKFLPLVYDKIKELRRL
                     IDEKNAKVFIEVDGGVNGLNASDLEAAGADILVAGSYIFSSNDYKTSISSLKLEF"
BASE COUNT         2512 a         1171 c         1083 g         2326 t
ORIGIN      
        1 taaaattata gatttaaaag acgctaagga tataatatgg atttaaaatt ggcaagaaat
       61 ttaatcaatg aagagcctaa aaatattagt ctagctaaaa ttgaagaggc tgtaaatcaa
      121 gaaggacaaa agttttttta ttttgataaa gaaaattcac acaaagatct tattgccttg
      181 gttgaacact ttgaaaaaaa aggcttaagt gtttatcata gaactatcag atatggttta
      241 gatagtaatg attttatgta tgaggttcat attctttgag ctcgaaaaaa ctttttattc
      301 aaaccttagg ctgtgcaatg aatgtcagag attctgaaca tatgatagca gaactgacgc
      361 aaaaagataa ttatacttta acagaagata ttaaagaagc agatttgata cttatcaata
      421 cctgctctgt gcgtgaaaag cctgtgcata agcttttttc agaagtgggt ggctttgaaa
      481 aggttaaaaa atcaggcgca aaaataggag tttgtggatg tacagcttct catttaggga
      541 gtgaaatctt tcgtcgtgct ccttatgtgg attttgtact aggagctagg aatatttcta
      601 aaattaccca agctgttaac actcctaaat ttatgagcgt tgatatagat tatgatgaga
      661 gtgaattcgc ttttggggat tttagaaata gcatttataa atcatatatt aatatctcta
      721 taggttgtga taagcattgt acttattgta tagttcccca tacaagggga gatgaaattt
      781 ccattccttt aaatatcatc tataaagaag cacaaaaagc agtagataaa ggagctaagg
      841 aaattttcct attaggacaa aatgtcaata attatggtaa aagatttaga aatgaacaca
      901 aaaaaatgga tttttcagat cttttagaag aacttagcac catagaagga ttagagcgca
      961 tccgttttac aagtcctcat cctctacata tggacgataa atttttagaa gtatttgcca
     1021 aaaatccaaa agtttgtaaa tcaatgcata tgcctttgca aagtggctca agtcaaattt
     1081 taaaagctat gaagcgtggt tacaccaaag aatggtatct agatagggca ttaaaattaa
     1141 gagaactttg cccaaatgtt agcatatcca cagatattat tgttgcattt ccaggagaaa
     1201 gcgataaaga ctttgaagaa accatggaag ttttagaaaa agtacgcttt gaacaaatgt
     1261 tttcttttaa atactctaaa cgccctttaa ccaaagctgc taccatgcca aatcaaatcg
     1321 atgaagagat agcctcaaat cgacttagta ctctacaggc tcgtcataat gaaattttag
     1381 acgatattgt taaaaaacaa gaaaataaaa cttttaaagt tctttttgaa gaattaagag
     1441 caggcaatgc tatcgtgggt agaacagata ataattttct agtgcaagtt gaaggcagcg
     1501 aagagctctt aggaactttt aaagaagtaa aaattactaa tgcaaagcgt atggttttat
     1561 atggggaaat catttaaaat agcttttata gcacgcttag ttttcattct acaatggttg
     1621 atttttctta cttgtaaaaa aacctacaaa ggtgataaag ttgatcaaat ttctaatgtg
     1681 atactttttt ggcatgggcg tcttgccctt atgcctttcg catttaggca ttttggcaaa
     1741 aaaggaaaaa aagcttatgt tatgatctct catcatagag atggggagca aattgctaga
     1801 attatcaaat tgtttggatt agataccgtg cgtggaagca cttcaaaagg agctagtaca
     1861 gctcttcgaa gtgcttttaa aattttagat gaaaatcatg atgtagtcat tactcctgat
     1921 gggccacgcg gaccttatca tagcatttca gatggagcgg tattgcttgc acagaaaaaa
     1981 aatgttaaaa taagaatttt aaactatgag gcaagaaatt tttgggaatt taaaagttgg
     2041 gataaaatga ttttacctaa gccttttact catttagtct ataggcttag cgaacccttg
     2101 gatatttcaa gtttagataa agatcaagct aaattttttt tacttgaaca ttttaaaaaa
     2161 attgaacaaa tggataaatt ttaaggaata aaatgttatt tttacttaaa aaaatattac
     2221 cacaactttt cacaagtatt attttagaag ataaaaaaaa catccttaaa acttctatat
     2281 ataaaaatca caaacttata agtagtaatg aaaaaacctt tgataagagt gaaaaattat
     2341 tagaatatgt aaaaacactc aatagcaaat ttttatttta tcacacagca ttatttttaa
     2401 atgtcaaaga gcaaggtttg attcctagta aaaacgacaa ggattttgag cgttttaatg
     2461 taggtaaaat gagcttaaaa tccatcgctt taaataatgc tttgatatac acagcaacag
     2521 aacacataga atactttaat gaattgtttg aagattatgg tggtttagat tttttatact
     2581 ctccttttgc tatactttat cataatattt taaaagaaaa accaaacagc gataaaataa
     2641 ctctttacgc ctataagcat gagcatattc taactcttat aatttgccga ggtattgaaa
     2701 ttttatatgg agatatcatt ttctttgaag aagaattgga tctagaattt ggacatcaag
     2761 aagagaattt agacaactta ggcgaagata cattaaatga tactgaagta acgcttgata
     2821 attttaatga aaccctagaa gataagctta acgctcttga tcaatttgat aatattttag
     2881 gaaataatga gaatgattca gagtttttgg atggcaaaga taaatttgat cttgaagaaa
     2941 tggatcaatt tggaaacgac atagaacttt gtcgtcatat tgttacaagt attgaaaaat
     3001 tttataaaga tgacaaatat ccaagtgcgt ttatcgataa ggctttaatc cttagcacca
     3061 aagagcttga tcaaagtgct attgaatttt tagaagaaga aactttactg gaaattgagt
     3121 ctaagccaat caatacctta gattcaatca tagaacttat gcaaaaggag cttcagtgaa
     3181 aagctatagc ttcatacaac ctagaaaaaa acctatcttt acactctttg acaaaatatg
     3241 gtttgggctt tttagttttg gtatagtttt tatttttgcg gtatattttc tatatcttac
     3301 tcaaatcgca ttaacgcata attttataga agagcaaaaa gaacaagttt tgcaatttca
     3361 aaataaaaca caagaaaacg gaaaattata tgatattctt ctagaacaaa gtaaaattgc
     3421 aaataccttt cacactcaaa atcaagcttt caaaaatagc ttaaaaaatc tttttgatat
     3481 aatagttaaa accgatggaa tcactcttga aagtatagaa caagaagaaa attctctaaa
     3541 acttatagga gttacgccaa caaaagaaat gtttgcccta cttttagaaa caccgctaaa
     3601 aagtattttt gatcaaagtt ttacaactta ttatcgttta aacaatggct ggtatcgctt
     3661 tattagcata agtaaacaaa attcaggagt tttacaatga aagataaaag tcttgaagaa
     3721 ttaaatattt taaagattgt tatttatgtt ttaagcttta ttactgtatg tactgctttg
     3781 attttatttt tattattgcc tgtgctgaaa gattacaaac aaacccattt aagaaaaaat
     3841 tcgcaagcag ctatatttaa tgcagcaaaa gctaagctag atactagtga aaataaaata
     3901 agcgccttaa gaacagaaaa taataaaagt ctagagcaat ttgaacaaca attcaatctc
     3961 acgcactttc aaaatttttt agaaaaatac tttgaaaata tccaaataac agaacttaaa
     4021 ctagataaaa aagaaaaata tcttacccat agaatcaaca tccgagcatc gataaataat
     4081 cctagacgct tatatgactt catagatgcc ttagctcaat ataacaatct tgtaaagatt
     4141 gattatccca tgaccttaaa ggctagtgat catgggataa tgataaatct taatgtgcaa
     4201 atttactcaa actagactta cattctcgcc ttttaagacc tgattcattg tattcatagc
     4261 acacattttt ccacacatag agcaggaatt tagatcatcg gggcgtcttt cgttaaacat
     4321 ttttttagct ttttcgccat caatggcaag tttaaacatt ttctcccagt cgatatcctg
     4381 tctcgcctta ctcatctcat catctctttt tctttctttt ggaagcttag ctaaatcccc
     4441 tgcatgagct gcaatcttag tagctactat accatctcta acatcattta aattaggcaa
     4501 tcttaaatgt tcagcaggag ttacataaca aagtatatca gcacccgcag cagcagccac
     4561 agcaccaccg atagctccac ttatatgatc atatccagca ccaatatccg taactaaagg
     4621 ccctagaaca taaaaaggag cgcctttgca aatgcgtttt tcaatttgca tattagcttc
     4681 aatctcatta attgccatat gtccaggtcc ttctatcatt acttgaacac ctgcttccca
     4741 cgctctttga gtgagtaaag ataattcgat aagttcagaa atttgcgctg catcacttgc
     4801 atcatgtgta gatcctggac gcaaagcatc acctaaagat agtgtcacat cgtattttaa
     4861 acaaatttca agcaaatcat catagtattc aaaaaaagga ttttcagctt ctttcatagc
     4921 catccacgcg taaagtactg atcctcctct agaaactata ttagtaagtc ttttgctttc
     4981 tttaaaaact ctagccgcgc gcgaatttat acccgcatgt atagtcataa aatcaacccc
     5041 gctttttgca tgatgataaa ccacatctaa aaaatcccta gcgctgattt gttttagatc
     5101 tttttctaaa aatcctaccg catcataaac tggaactgtt cctatcatag cttttgaaac
     5161 tgcgataagc tcatctctaa aacgacttgt tttgccataa ttgcttaaat ccataatagc
     5221 ttcgattcca aatttgtgag caagctctac ttttttcatc tcctcactat aatcaacaca
     5281 atcatttgaa acacctaaat ttacatttac cttagtgcga agtccaagtc ctataccatt
     5341 tggatcaaga cttttatgat tgatattagc agggatgata atcttaccac aagctatatt
     5401 tgcaagcaaa aaatctttgc ttacttcttc tttttgagca acaatctcca tttctttggt
     5461 aaaaatacct tctttggcat aaagcatttg agttttcata tttatccttt gaaaaatttg
     5521 gataaatgag ggtgcaagta aattgtagaa agtataaatc ttcccgacgc tagcattatc
     5581 tagttccggt tcggtctaag cttttagctt actctcagcc tgtatcacaa gctcccgtca
     5641 tttatgtttt aattatactc tttaaatatt ttatttttgc tttatgcgag aagtcttggt
     5701 aaaatttata agttcttcag tggttttgat atgataaggg agtttgccaa gacaatgttt
     5761 aaaaatttca gccgcagcca aagcgtcgtt taaagctcta tggtgggcat tttttatccc
     5821 taaaagctct tttaaaacat ctaatttata tcttggactt tctatacagc attgcgcaaa
     5881 ttctatggtg caaatacgac gattaagcaa aattccaaaa ccacactcat ttaaagcctt
     5941 ggaaataaaa ccataatcaa aacgcacatt atgtgcgaca aaaatactgt cttttaaaaa
     6001 aagtctaaaa tcatttaaaa ccttagtcaa actcggtgca tcttttacca tgtctaaatt
     6061 aattcctgta agttctgtaa tattttcagg aatttctttt acctgtacca aagagctaaa
     6121 acgatcgatt tcttgcaaat tttttatctt aactgcacct atttctaaaa tttgtccgtt
     6181 tttaatcccg cctgtacttt ctatatctac aatgcaaaaa atttcttctt tgatcttttt
     6241 tgtacgcgtt tgcaaggtaa aaatattatt tttatctaga gttaaaccca aacccaaaag
     6301 ctcgaaagtt tctaaatcaa gttcataatc ttttaattct tcaatctttt taaattcttt
     6361 aattacccac tcatagggct tactttgctt acttaagata gaaataatct gatcaacttg
     6421 ctgcaaactc aaaattcaag ctttaaagat gaaattgaag ttttataatc atttgaagaa
     6481 aaaatataac ttccagcgac taaaatatct gctcccgcag cttctaaatc gcttgcattt
     6541 aagccattaa ccccgccatc aacctctata aaaaccttag catttttttc atcgatcagt
     6601 cttcttaatt ctttgatttt atcatatact aaaggtaaaa atttttgtcc gccaaagcca
     6661 ggattaacac tcattaaaag caccatatct acaaagtcta tcatatgttt tatggaattt
     6721 ataggagtat gtggatttaa aacaatagca ggatggattc cttgacttct tatatactcg
     6781 caaagtcgta tagggtgggc ttcactttct atatgaaaag aaataaattt aggcttgata
     6841 gggataaaaa gatctacaaa tttacccaca tcttttacca ttaaatggac atctaaaggt
     6901 atttcggtaa tggttgaaat tttttctatt acacagggtc caaaggttaa atttggaaca
     6961 aaatgcccgt ccataacatc aatgtgcaaa agatcagctc ctgcttcatc aattgcctta
     7021 atctcttctt ctagttttaa aaaattggcc gataataaac tcggagctac atacataagc
     7081 ttagcctcgt aa
//
LOCUS       DBBXRO010000088         7089 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.089, whole genome shotgun sequence.
ACCESSION   DBBXRO010000088 DBBXRO010000000
VERSION     DBBXRO010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7089
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.089"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..2183)
                     /gene="pbpC"
                     /locus_tag="ACJFEZ_001356"
     CDS             complement(<1..2183)
                     /gene="pbpC"
                     /locus_tag="ACJFEZ_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HGG0917468.1"
                     /translation="MKNALKIFSFLLLFFLAYVFYVYFSFDKNTLLDDFKSRYSKILY
                     DKNGEILSVFLNDEEQWHIKSTDIPKRLKVSVINYEDRKFYSHFGVDFLALMRAFVNN
                     FNSTQRSGASTISMQTIKLWDKKDRTYFNKFNEIIQSLALENAFSKDEILKLYLSNAP
                     YGGNLIGYEAAILFYFDKNPKDLTWAQAALLAILPNQPGLINLEKNKTKLLDKRNKLL
                     AKLYERKLINKDIYELSLKEPLPNFKPRKNIAPHLALRLLSDDNKEIFSSIDKKIQLK
                     IEKKAKEFSYTLQQKGIQNLAIILTDTKTRKVLAYVGSQDFYDMANLGQINGNIAKRS
                     VGSTLKPFLYALSIDEGIIAPDSILLDVPTFFSNFNPQNANKKYYGIISAKEALQRSL
                     NVPFVSLLQDYGYEKFFYKLKAFLNFEDENYKRYGLSLILGTKELSLEDLIKLYLGLA
                     NYGELANLSFIRDENLSGVARMFSKGSAYLTLEAMKELQRVGLENYNKEKIISWKTGT
                     SYGRKDAWAMGATPKYTLGVWVGNFSGEANANLYGVSIAGDLLFEILGLLDEVDLEFA
                     PPDDLMTIKLDSISKYRYDEDLNTSYINVLYPKGANILRTSPFLKKVYEYQGRELDSK
                     DIHFKDAKALIKLDFPAYALHFFQQRNFKFSNKKGVKIIYPKDNLKLILAKDLNGMKG
                     LVAKVANLNNEKLFWYLNQKLIYEGDENTQNLNLKEGKYQLFIIS"
     gene            complement(2191..>7089)
                     /locus_tag="ACJFEZ_001357"
     CDS             complement(2191..>7089)
                     /locus_tag="ACJFEZ_001357"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0010951 - negative regulation of
                     endopeptidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin"
                     /protein_id="HGG0917469.1"
                     /translation="YKAQLEQDEEKAYLHLNYSFGSTYNWQFEDKTQEGLKITLDGKD
                     LAFSLGEFSLDTDDIKLLDRPQELVLTYDEKIMGFKEAKVLQFQIPSKSKNNDFRLIS
                     AEEKDQIATLKFSKELAENQAFQDFIQISPELNFRAWSIGKELKISANFEPGEKYKVK
                     IAKGLKSNQGLINQGEEANIILQKDLDPSLVFANDGVFLPSGAEYQVYIKSRNVKKIH
                     LKVSQIFANNISEYLRYKNLVGKKDDSTQEAFYSSDGFNYVAKNVIDKKIELKNQKNT
                     WINTALDLSDLKGKTGIFSVSLSVDANDLDYKGENVYRIINKASVSKNLIFSNIALSA
                     QNLNKQLVVHARDFSKNEALENVKIELVSKQNQILQSQNTNSNGDVKFQIQEDDEILY
                     ILASKENQISVLRFSNPLSTDGYDVEGDQNHEMIKAFIYTDRGVYRAGDSVHLSVVAR
                     ENTNPLKHPISFTLINPKNQKVIENQILKSQNDIYYTQIHLDKNAINGLYRAIFNIAG
                     VEFSKDILVQSVVPNRIKVELNADENRSLDDGNLNYELSSKYLFGALASNLKYQSFVY
                     FSPKNYHNSKYKDYIFINPSSLIIRASADDKGNLDEKGRVQSSVEIPENILNSQGYNF
                     NARIVSEVFEKGGRSVKAVRDVNLNRYDYFVGMKALTNSYVSEGETIDFYAIVSDLKE
                     NLVSGKTLEYRIYQNDYYWWWDYDSYDEFLRSIKQDHNTKLIEKGELTSSSEPMKFSF
                     NTSNYYGQMFIELIDKESGISAGQSFYVSSWGEPSYADVVSSLKIKSDKNKYKIGQSA
                     KIEFESVAGAKALITLSSNSKIIDRFVMDTQGESTSIELAMKKEYAPNIYVSVSLFQD
                     YNKIDNDRALRLFGIIPLYVEDENTKLNLELKTPDKILPNSDFEIEIQSKDKRAFNYT
                     VAIVDEGLLDLTDFKTPDIWEGFYAKTGFTLKTYDTYSQIIPKFTGGDSVSKIGNLRA
                     DKNRDDSAQRFKPVVLFNAPARSDEAGFAKLKFKMPSYMGLVRVMVVANENDAYGSIS
                     KDMQVSAPLVLLETLPRTLKIGDNFTLLTQIFKTENRIKNATLSVRSKNSLIKISPDT
                     QAIDFKNATNLEVMMDANVSDNRIGKELLEFELKSENYTYKNEIEIDIKPINAYTYEN
                     NTSLIKAGESKEFIIKDYILGTTNATLKLSPTPILDMDKRIKYLLNYPYGCIEQTTSA
                     VLPQLFLDKFSTEFDKQKAINNINAAIERYANFQTADGGFAYWQGGDESNAWGSNYAG
                     MFLILAKQNGYFVPDSMYERWLKYEQNFVQKSIYHDYMMDIKANSLYLLAMAKKPNIS
                     EMNLLYDSLNTLSTEAKWQLAAAYKLAGVEDTAKQIASKISIEPDSKYSSYTYGSLIR
                     DEAIIANAYKQIYGTNNEELLQKISYTLLSKDYLSTQSTGYALYALAMGANLENMNEN
                     FMDATLKIGDQVHTIDQNQMQIFSFNNEKAIINANKDIFVSFGVEGVKAGENSAFSNK
                     ISLDRAFYDEKGNKISPSEIGSGQTFYMRISASLNEGANYVSNIALTQILPSGWEVSN
                     TLLDDNTPSFIKNSSYDFIDVRDDKIMWFFSLNKNRTHHFYIKLNAITPGSYTLSGAY
                     VEAMYDDTYRALSESEKVVVKR"
BASE COUNT         2328 a         1285 c          867 g         2609 t
ORIGIN      
        1 tgagaaataa taaaaagctg atatttgcct tcttttaaat ttaaattttg cgtattttca
       61 tctccctcat aaataagttt ttgatttaaa taccaaaaaa gcttttcatt atttaaatta
      121 gctacttttg ccacaagacc tttcattcca tttaaatctt tggctaaaat aagttttaaa
      181 ttatctttag gatagataat cttaacaccc tttttatttg aaaatttaaa atttctttgc
      241 tgaaagaaat ggagtgcata agcaggaaaa tcaagcttta tcaatgcttt tgcatcttta
      301 aaatgaatat ccttagaatc aagctcccta ccttgatact cataaacttt tttcaaaaaa
      361 ggggaagttc ttaaaatatt tgccccttta ggatataaaa cattaatata acttgtattt
      421 aaatcctcat catatctata tttactgata ctatctaact tgattgtcat caaatcatca
      481 ggcggcgcaa attccaaatc cacctcatct aaaagtccta aaatctcaaa aagcaaatct
      541 cctgctatac tcacgccata taaatttgca ttagcttcac cgctaaaatt tcctacccaa
      601 actcctaagg tatattttgg agttgcgccc atggcccaag catcttttct accataactt
      661 gtgcccgtct tccaagaaat aattttttct ttattgtaat tttctaaacc cactctttga
      721 agttctttca ttgcttctaa ggttaaatac gcactaccct tagaaaacat tcttgctact
      781 ccgcttaaat tttcatctct tataaaagaa agattggcaa gctctccata atttgccaaa
      841 cccaaataaa gttttataag atcctcaaga ctcaattctt tagttcctaa aataagcgaa
      901 agcccatatc gcttgtaatt ctcatcttca aaatttaaaa aagcttttaa tttataaaaa
      961 aatttttcat aaccataatc ttgcaaaagc gatacaaaag gaacattcaa agatctttgt
     1021 aaagcttctt ttgcactgat tatcccataa tattttttat ttgcattttg gggattgaaa
     1081 ttagaaaaaa aggttggaac atcaagcaaa attgaatccg gtgcgataat gccttcatca
     1141 atacttaaag catacaaaaa gggttttaaa gtagaaccca cactgcgctt ggcaatattt
     1201 ccattaattt gtcctaaatt tgccatatca taaaaatctt gcgaacccac ataagctaaa
     1261 actttgcgtg ttttagtatc ggttaaaata atggctaaat tttgtatgcc tttttgttgc
     1321 aaagtataag aaaattcttt agcctttttt tcgattttaa gttgaatttt tttatctatg
     1381 cttgaaaaaa tttctttatt atcatcactt aaaagtctta aagcaagatg gggtgcaata
     1441 tttttgcgag gcttaaaatt tggcaagggc tcttttaaag aaagttcgta aatatctttg
     1501 ttgattaact ttctttcata aagttttgct aaaagtttgt tgcgtttatc taaaagtttc
     1561 gttttatttt tttctaaatt aataagtcct ggttgattgg gtaaaatcgc aagcaaagca
     1621 gcttgagccc aagttaaatc tttaggattt ttatcaaaat aaaataaaat agcagcttca
     1681 taaccgatta aattcccgcc ataaggagca ttgcttaaat aaagctttaa aatttcatcc
     1741 ttactgaagg cattttccaa agctaagctt tgtataattt cattgaattt attaaaataa
     1801 gttctatctt ttttatccca aagcttaatc gtttgcatac taatagtact tgcaccactt
     1861 ctttgagtag aattaaaatt atttacaaaa gcccgcatta aagctaaaaa atctactcca
     1921 aaatgagaat aaaatttcct atcttcataa ttaatcacag agactttcaa acgcttggga
     1981 atatcagtgc tcttgatatg ccattgctct tcatcattta aaaaaacact taaaatttcg
     2041 ccatttttat cgtataaaat cttactataa cggcttttaa aatcatccag taaggtattt
     2101 ttatcaaaag aaaaatatac ataaaaaaca taagcaagaa aaaaaagtag caaaaagcta
     2161 aaaattttta aagcattttt catgttttat ttagcgtttc acaactactt tttcactttc
     2221 acttaaagct ctataagtat catcatacat cgcttctaca taagcaccac ttaaagtata
     2281 acttcctgga gttatggcat taagttttat ataaaaatga tgcgtgcgat ttttatttaa
     2341 actaaaaaac cacatgattt tatcatccct aacatcaata aaatcatagc ttgaattttt
     2401 aataaaactt ggagtgttat catctaaaag cgtattgctc acttcccaac cgcttggtaa
     2461 aatttgtgtt aaagcgatat tagaaacata atttgcaccc tcatttaagc tcgctgaaat
     2521 tctcatataa aaggtttgtc cagaaccaat ctcgctagga ctgattttat tacccttttc
     2581 atcataaaaa gcacgatcta aactgatttt attgctaaaa gctgaatttt cacccgcttt
     2641 taccccctct actccaaaac ttacaaatat gtctttattc gcatttataa tagctttttc
     2701 attattgaaa gaaaaaattt gcatttggtt ttgatcgata gtatgtactt gatcacctat
     2761 ttttaaagtc gcatccataa aattttcatt catattttct aaatttgcac ccatggctaa
     2821 agcatataaa gcatagcctg tactttgtgt ggataaataa tcctttgaaa gtaaggtata
     2881 gctgattttt tgaagtaatt cttcattatt agtgccataa atttgtttat aagcatttgc
     2941 gataatagcc tcatctctta ttaaagaacc ataagtataa gaagaatatt tagaatcagg
     3001 ctctatagaa atcttgcttg caatctgttt tgcagtatct tcaacacctg caagtttata
     3061 tgctgcagcc aattgccact tagcttcagt gcttagcgta tttaaactat cataaagcaa
     3121 attcatctcg ctgatattag gtttttttgc catagccaaa agatataatg aatttgcttt
     3181 tatatccatc atataatcat gatatatact tttttgaaca aaattttgct catattttaa
     3241 ccatctttca tacatggaat caggcacaaa atacccattt tgcttagcta aaatcaaaaa
     3301 cattcccgca taattacttc cccaagcatt gctttcatct cctccttgcc aataagcaaa
     3361 tcctccatca gcggtttgaa aattggcata acgctcgatg gctgcattga tattattaat
     3421 cgctttttgc ttgtcaaatt ccgtgctaaa tttatctaaa aaaagttgtg gcaaaactgc
     3481 tgaggtagtt tgttctatac agccataagg ataatttaac aaatacttaa ttcttttatc
     3541 catatctaaa ataggtgtag gcgaaagctt taaagttgca tttgtagtcc ctaaaatata
     3601 atcttttata ataaattctt tactttctcc tgctttaatc aaactagtat tattttcata
     3661 tgtataagca ttgataggtt tgatatcgat ttcaatttca tttttataag tataattttc
     3721 actttttaat tcaaattcta aaagctcttt accaatccta ttatcactta catttgcatc
     3781 catcatcact tctaaattag tagcattttt aaagtctata gcttgagtat ctggacttat
     3841 ttttataaga gaatttttac ttcttacgct caaggttgca tttttaatac gattttctgt
     3901 tttaaaaatt tgagttaaaa gcgtgaaatt atcgcctatt tttaaagtcc ttggcagagt
     3961 ttcaagcaac acaagaggtg cacttacttg catatcctta gaaatgctac cataagcgtc
     4021 attttcattg gccacaacca tcacacgaac caaacccata taagaaggca ttttaaattt
     4081 aagttttgca aagcctgctt catcgcttct tgcaggagca ttaaaaagca ctacaggttt
     4141 aaaacgctgt gcgctatcat cacgattttt atctgctctc aaattcccta tctttgaaac
     4201 actatcgcct ccggtaaatt tagggataat ttgactataa gtatcataag tttttaaagt
     4261 aaatcctgtt tttgcgtaaa agccctccca aatatcaggg gttttaaaat ctgttaaatc
     4321 aagaagtcct tcatctacaa tagccacagt ataattaaaa gctcttttat ctttgctttg
     4381 aatttctatc tcaaaatcac tattaggtaa aattttatca ggagttttta attctaaatt
     4441 aagctttgta ttttcatctt ctacatacaa aggaattata ccaaaaagcc ttagggcacg
     4501 atcattatca attttattat aatcttgaaa taaactcacg cttacataga tatttggtgc
     4561 atattctttt ttcatcgcca attctatact cgtgctttca ccttgagtat ccatcacaaa
     4621 acgatcaata atcttggaat tagaacttaa agttatgagt gctttagctc ctgcaacact
     4681 ttcaaattct atttttgcac tttgtcctat tttatatttg tttttatcac ttttaatttt
     4741 taaagaactc accacatcag catagcttgg ctctccccaa gagcttacat aaaaactttg
     4801 ccctgcgctt attccacttt ctttatctat aagctcaata aacatttgtc cataataatt
     4861 gcttgtgtta aagctaaatt tcataggctc gctagagcta gtaagctccc ctttttcaat
     4921 aagtttggta ttgtgatctt gcttaataga gcgcaaaaat tcatcataag aatcataatc
     4981 ccaccaccaa taataatcat tttgataaat tctatactct aaagttttgc ctgaaactaa
     5041 attttctttt aaatcactta caatggcata aaaatcgatc gtttctccct cagatacata
     5101 agaatttgtc aaagctttca ttcccacaaa ataatcataa cgatttaaat ttacatccct
     5161 aacagctttt acagatctgc cacccttttc aaagacttct gaaacaatcc ttgcattaaa
     5221 attgtaacct tgagaattta aaatattttc aggaatttca acacttgatt gcaccctgcc
     5281 cttttcatct aaatttccct tatcatcagc acttgctctg ataatcaatg aacttggatt
     5341 aataaaaata taatctttat atttagaatt atgataattc tttggagaaa aatatacaaa
     5401 actttgatat tttaaatttg aagctaaggc tccaaaaaga tattttgaag aaagctcata
     5461 gtttaaattc ccatcatcta aacttctatt ttcatcagca tttaattcta ccttaatgcg
     5521 atttggcacc acactttgaa ctaaaatatc tttgctaaat tccaccccag caatattaaa
     5581 aattgcccta taaagtccat taatggcatt tttatctaaa tgaatttgcg tatagtaaat
     5641 atcattttga ctttttaaaa tttgattttc tatgactttt tgatttttag gattaattaa
     5701 agtaaaactt atagggtgtt tgagcggatt tgtattttct cttgcaacca cacttaaatg
     5761 cacactatca cccgctctat aaaccccacg atctgtgtaa ataaacgcct ttatcatctc
     5821 atgattttga tccccttcta catcgtaacc atctgtggat aaaggattgc taaatcttaa
     5881 aacactgatt tgattctctt tgcttgctaa aatatagagt atttcatcat cttcttgaat
     5941 ttgaaatttc acatctccat tagaattggt attttggctt tgcaaaattt ggttttgctt
     6001 acttacaagc tctattttta cattttctaa ggcctcattt ttactaaagt ctcttgcgtg
     6061 aactacgagc tgcttattta ggttttgagc acttaaagcg atattagaaa aaataagatt
     6121 tttactgaca ctagctttat ttataatacg atatacattt tcacccttat aatcaagatc
     6181 gttagcatca acacttaaac tcactgaaaa aattccagtt ttacctttta aatcacttaa
     6241 gtctaaagca gtatttatcc aagtattttt ttgattttta agctctattt ttttatcaat
     6301 gacattttta gcaacataat taaaaccatc tgaagaataa aacgcttctt gagtgctatc
     6361 atctttttta cccaccaaat ttttataacg caaatactca cttatattgt ttgcaaaaat
     6421 ttgacttact tttaaatgaa tctttttaac attgcgcgat ttgatataaa cttgatattc
     6481 tgccccacta ggcaaaaata ccccatcatt tgcaaaaaca agacttggat ctaggtcttt
     6541 ttgtaggatg atatttgctt cttcaccttg attgattaag ccttgatttg attttaaacc
     6601 ttttgcgatt ttaactttat acttttctcc tggctcaaaa ttagctgaaa tttttaactc
     6661 ttttcctata ctccacgccc taaaattaag ctcgggtgat atttggataa aatcttgaaa
     6721 ggcttgattt tcagctagtt ctttagaaaa ttttaaagta gcaatttgat ctttttcttc
     6781 tgcactaatg agtctaaaat cattattttt tgatttgcta ggaatttgaa attgaagcac
     6841 tttggcttct ttaaaaccca tgattttttc atcataagtt aaaacaagtt cttgaggtct
     6901 atctaaaagc ttaatatcat cagtatcaag actaaattca cccaagctaa aggctaagtc
     6961 tttgccatct aaagtgattt ttaaaccttc ttgtgtttta tcttcaaatt gccaattata
     7021 agtgcttcca aagctataat ttaaatgcaa ataagctttt tcttcatctt gctctaattg
     7081 agctttata
//
LOCUS       DBBXRO010000089         7037 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.090, whole genome shotgun sequence.
ACCESSION   DBBXRO010000089 DBBXRO010000000
VERSION     DBBXRO010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7037
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.090"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            77..1141
                     /locus_tag="ACJFEZ_001358"
     CDS             77..1141
                     /locus_tag="ACJFEZ_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HGG0917470.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPKALAEV
                     NFALTRGVKNIEELDALAKKARNAGLNGVNTYFNPLKKVFEYLNFYKLHSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSK
                     GAKLPEFMNEDELKKFLEAIENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDIS
                     EENELYIIRIRAKGNKYRVVMIKKELIEHLLKDVRVNYLSEDGLLFVNRNGKALTQAY
                     VSRIVEQILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYT
                     HFDNDKLKLAAQVAKELSER"
     gene            1131..2909
                     /locus_tag="ACJFEZ_001359"
     CDS             1131..2909
                     /locus_tag="ACJFEZ_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HGG0917471.1"
                     /translation="MSAETKFAIFGKYFYYDLKFVLKAYNKKQSKKYFKFVQKHKDKY
                     YFLTLVDYEFYKYLQDKNFTSKEAYLSFYAYKKRKKFTAMRVDEENFMPIFKNHLDFK
                     NYEKNFLQVKSAIAKGRSYQVNLTQSFHFDSLLDGFSLFNLLSKRQDTEFKAYIKDEG
                     REILSFSPELFFKIHKRKIITQPMKGTSARSKDLNQDKKNKLFLQKDVKNLSENVMIV
                     DLLRNDLSKLIVKNSMKTKLFKIQSYPTLHQMTSIIKGKLKKDIDYFQIFKALFPCGS
                     ITGAPKLETIKLIEELEARKRGIYCGAIGCIHKNKSKFSVAIRTLEKKQDYQYSVGSG
                     LVWDSKLEEEIKELELKTQFLMPKNFYLFETMYYKKGKILFFKEHLQRILNSALKLNF
                     NTQKLIKDFQEVLSYKSNLKEFKNFNIQALNEKLFHKNHSFFYPSIIKSHHKQAIFKL
                     ILQKDGNYTILENHIKTSDNNILLLSDKPLNSQSDSLYHKSSLRQIYDQKAFLWKENQ
                     CFDIAFFNEKNELCEGSRSNIIIKKDKVLYTPTLQSGLLNGIYRQFLLDLGLIKEKKL
                     FKEDLLNADEIYCINSVRGLQKVSVK"
     gene            2906..3484
                     /locus_tag="ACJFEZ_001360"
     CDS             2906..3484
                     /locus_tag="ACJFEZ_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HGG0917472.1"
                     /translation="MKKILLIDNYDSFSYTIVFYLKELGYQCKIIKNDEFKKAKDLAR
                     FDFSHLIISPGPNSPTESKLSLKAIQYFKKDKKILGICLGHQCIGEIFGGKITPMPYP
                     MQGKISRLHLKKNAKKSLLFKGIKNKSKICLYHSLHISKMPKSCEILALNDKNIIMAI
                     KHKKYEIYGVQFHPEAILSQNGKKLLKNFMKI"
     gene            complement(3481..4341)
                     /locus_tag="ACJFEZ_001361"
     CDS             complement(3481..4341)
                     /locus_tag="ACJFEZ_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HGG0917473.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYGVDWVSFYRLFCTGIV
                     LILYSLKKIKIFQFKKDELLSFLIFAFFGLLMTQYGYFKAIFYTDAGTATMIQYCAPL
                     LIMIYVCLKDKKMPKIFESMALIFIILALFLLASGGDISNLNLNLWGIFWAILGAFGV
                     AFYSLGARKIIAKYGIFFVMGWSSLIASFILFGILEFKEGLVHYDFALNLYLAQTGII
                     FIGTIGAFCLYLKGVEYIGALRASMIACIEPVAAAFMSFLFLGTRYSFLDLFAFALII
                     LSVILNAKKS"
     gene            4536..5792
                     /gene="murA"
                     /locus_tag="ACJFEZ_001362"
     CDS             4536..5792
                     /gene="murA"
                     /locus_tag="ACJFEZ_001362"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HGG0917474.1"
                     /translation="MTYLEIQGSQKLQGEVIISGAKNAALPLIASSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKTDFKENTAYLDTSTLDKTVAKYDIVRKMRASILTLGPLL
                     ARFNHCEVSLPGGCAIGQRPIDLHLSALEKMGANIEIKQGYVVASGNLKGAQILFDKI
                     TVTGSENIIMAAALAKGKTKLVNVAKEPEVVQLCEVLAKAGLDIKGIGTDELEIYGTD
                     KELLDFKEFSVIPDRIEAGTYLCAGAITNSKITLKKVNAEHLGAVLAKLHQMGFETLV
                     DNDNITLFPAKEIKATEIMTSEYPGFPTDMQAQFMALALMAKGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALVAKGTSRIHRI
                     YHLDRGYEKLEEKFKALGAKITRLEE"
     gene            5789..6955
                     /locus_tag="ACJFEZ_001363"
     CDS             5789..6955
                     /locus_tag="ACJFEZ_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HGG0917475.1"
                     /translation="MKNIFQTLAHLQDQIKALNEFELISLEEAKDRVLAKDLYAVKNL
                     PSFDNAALDGYAFNYADANQALDIKGTILAGDKNTYEIYKNECFKIMTGAKMPKNADT
                     ILMIEDECIEEGKLVIKKPPKQYNAYRYKGEELKKDELLLKKGTRLNARHIALLSSQG
                     LYKIEVVRKIRIGIFSSGDELKEPWQDCDEENIYNANALPLLALFKDCATSYLGIIKD
                     DFNATKKALENANFDLLITSGGASVGEADFMEKALNELGFTPLFKGLKARPARPTKLY
                     QKDKTLVLILPGNPMAAYLSAFIFARKIIALLYGNLENPLQIQAFMGSDLKVKSGRNN
                     LILGNLEKGIFYPFNDNKFGSGMILPLIQSEFLLISEEEKVDFQKDERIMLFKL"
BASE COUNT         2726 a          999 c         1109 g         2203 t
ORIGIN      
        1 taagttgata ctaaaatacc ttttttagtt aaaattgatt aaaaacaaaa attataagat
       61 tttaggaaaa gtttttatga aatatccttt agattgtgaa gaaaattttg aaaagtcttt
      121 tttattttgg cttgcaaaat atgttaaatt taaactcaac tctctttcca ataaagaact
      181 taaaaatcca aaagccctag cagaggttaa ttttgcactt acaaggggcg ttaaaaatat
      241 agaagagctt gatgccttgg ctaaaaaagc aagaaatgcg ggtttaaatg gggttaatac
      301 ttattttaat cccttaaaaa aagtttttga atatcttaat ttttataaat tacactcctt
      361 aaagcaaatc gatgaagagc ttatagtgga ggttttagca agtattactg gagctttatc
      421 ggatgcgagt aaaaaaaact accgtattgc agtgattaat ttttttgatt ttttagataa
      481 acaaaacgaa gaggatgaaa aggcgcatat ttttaatatt gtacttaaaa attggggagg
      541 tattacagga agcaagggag caaaactgcc tgaattcatg aacgaagatg agttaaaaaa
      601 attccttgaa gccatagaaa attcagattt taaaaacaat accatacgca acaagcttat
      661 tataaaaatc atcattttta caggaattcg tgtaagtgag gctatcaata tcaaactcaa
      721 ggatattagc gaagaaaacg aactttacat tataagaatt cgcgccaaag gaaataaata
      781 ccgcgttgtg atgataaaaa aagaattaat cgagcatttg ttaaaggatg taagagttaa
      841 ttatttaagt gaagatggct tactttttgt caatcgcaat ggaaaagctt taacacaagc
      901 ttatgtaagt cgtattgtag agcaaatttt atttcgcgca ggaattcgca agcaaaaaaa
      961 cggcgctcat atgcttcgcc atacttttgc taccctactc tataaaaaac aaaaagattt
     1021 ggttttggtg caagaagctt taggtcatgc aaatttaaat acttcaagaa tttatacaca
     1081 ttttgacaat gataaattaa agcttgctgc acaagtagca aaggaattaa gtgagcgctg
     1141 aaacaaaatt tgccattttt ggtaaatatt tttattatga cttaaaattt gttcttaaag
     1201 cctataataa aaaacaaagt aaaaaatact ttaaatttgt gcaaaaacat aaagataaat
     1261 attatttttt aactcttgtg gattatgaat tttataaata cttacaagat aaaaacttca
     1321 ctagcaaaga ggcttatttg agcttttatg cttataaaaa aagaaaaaaa ttcactgcga
     1381 tgagggttga tgaagaaaat tttatgccta tttttaaaaa tcatttagat tttaaaaact
     1441 atgaaaaaaa ctttttgcaa gtaaaatccg ctatagcaaa aggacgaagc tatcaggtca
     1501 atctcactca aagttttcat tttgatagct tgcttgatgg attttctttg tttaatcttt
     1561 tatccaaaag acaagatact gaatttaaag cgtatattaa agatgaagga cgcgaaattc
     1621 tttccttttc tcctgaatta ttttttaaaa tccataaaag aaaaataatc acccagccta
     1681 tgaaaggcac gagtgcaaga tctaaggatt taaatcaaga taagaaaaac aaactttttt
     1741 tgcaaaaaga tgttaaaaat ttaagcgaaa atgtaatgat agtcgatctt ttaagaaacg
     1801 atctttcaaa acttatcgtt aaaaacagca tgaaaacaaa gctttttaaa attcaaagtt
     1861 accctacttt acatcaaatg acttccatta taaaaggcaa gcttaaaaaa gatattgatt
     1921 attttcaaat tttcaaagct ttatttccct gcggttcgat cacaggagct cctaaacttg
     1981 aaaccataaa acttatagaa gaacttgaag caagaaaacg cggaatttat tgcggtgcta
     2041 taggttgtat ccataaaaat aaaagcaaat ttagtgttgc tatacgcact cttgagaaaa
     2101 aacaagatta tcaatacagc gtgggaagtg gtttggtgtg ggattctaag cttgaggaag
     2161 aaattaaaga attggagtta aaaactcaat ttttaatgcc taaaaatttt tatctttttg
     2221 aaactatgta ttataaaaag ggtaaaattt tattttttaa agaacatttg caaagaattt
     2281 taaattctgc cttaaaattg aattttaaca cacaaaaact cattaaagat tttcaagaag
     2341 tgttaagcta caaatccaat ttaaaagaat ttaaaaattt caatatccaa gctttaaatg
     2401 aaaaactttt tcataaaaat catagctttt tttatccaag catcattaaa agtcatcaca
     2461 aacaggctat ttttaaactt atcttgcaaa aagatggcaa ctatactatc ttagaaaatc
     2521 atatcaaaac aagtgataat aatatcttgc ttttaagtga taaaccctta aattcgcaaa
     2581 gcgattcttt atatcataaa agttctttaa gacaaattta tgatcaaaaa gcttttttat
     2641 ggaaagaaaa tcaatgcttt gatatagctt tttttaatga aaaaaatgaa ttatgcgaag
     2701 gttcaagaag caatatcatc attaaaaaag ataaagttct ttatacccct accctacaaa
     2761 gtggactttt aaatggaatt tataggcaat ttttgcttga tttaggactt ataaaagaaa
     2821 aaaaactttt taaagaggat ttgttaaatg cagatgagat ttattgtatc aattcggtta
     2881 gaggattgca aaaagtgagt gtaaaatgaa aaaaatttta ctcatagata attatgattc
     2941 tttcagctat actatagttt tttatcttaa agaattgggc tatcaatgta aaattataaa
     3001 aaatgatgaa tttaaaaaag ctaaagattt agctcgcttt gatttttctc atcttatcat
     3061 ctctccaggt ccaaattctc ctactgaatc aaaattaagt ttaaaagcaa ttcaatactt
     3121 taaaaaagat aaaaaaatac taggaatttg tttaggacat cagtgtatag gcgagatttt
     3181 tggtggaaaa atcactccga tgccctaccc tatgcaaggt aaaatttcaa gattgcatct
     3241 taagaaaaat gctaaaaaaa gcctgctttt taaaggtatt aaaaataaaa gtaaaatttg
     3301 tttgtatcat tctttacata ttagcaaaat gccaaaaagc tgtgaaattt tggctttaaa
     3361 tgataaaaat atcatcatgg caatcaagca taaaaaatac gagatttatg gggtgcaatt
     3421 tcaccccgaa gcaattttaa gccaaaatgg caaaaaatta cttaaaaatt ttatgaaaat
     3481 ttaacttttt ttagcattta aaatcacgct taagataatt aaagcaaagg caaaaagatc
     3541 taaaaagctg tatcttgttc ctaaaaataa aaagctcata aaagcagctg ctacaggctc
     3601 gatacatgct atcatgcttg ctcttaaagc tcctatgtat tcaacccctt taagatatag
     3661 acaaaaagcc cctatagttc ctataaatat tatacctgtt tgggctaaat acaaattaag
     3721 agcaaaatca taatgcacta aaccttcttt aaattcaagt atcccaaaaa gtataaaaga
     3781 agcgattaaa ctagaccaac ccataacaaa gaaaattcca tattttgcaa tgatttttct
     3841 tgcacctaaa gaataaaaag caaccccaaa agctcctaaa atagcccaaa aaattcccca
     3901 taaatttagg tttaaattgc ttatatctcc accacttgca agcaaaaata gagctagaat
     3961 tataaaaatt aaagccatac tttcaaaaat tttaggcatt tttttatctt ttaaacatac
     4021 ataaatcatg ataagcaaag gagcacagta ttgtatcata gtagcagtac ccgcatcggt
     4081 ataaaaaata gctttaaaat atccatattg agtcatcaat aaaccaaaga aagcaaaaat
     4141 caaaaaggat aaaagctcat cttttttaaa ttgaaatatt tttattttct ttaagctata
     4201 taaaataagc actatacctg tacaaaacaa tctataaaaa cttacccaat ctaccccata
     4261 attattttta aacaaatact cagccaaaac tccacttata gcccaaaaaa ttccacccag
     4321 taaaaccaga aaaacaccca tgatatcacc ttgaaaaata aaatatttat cattactttt
     4381 taaatttaaa ataatacaat aaaaatcatc aaactcggaa aaatttaagc tccaaataaa
     4441 tcacaaattt caaaacgaaa agcccaagca ataaactttt acaaagttta aaaaggtata
     4501 attaagcttt gaaatttaaa ataaggttta tcataatgac ttatttagaa atacaaggct
     4561 cccaaaaact tcaaggtgaa gttataataa gtggtgcaaa aaatgccgct ttacccctaa
     4621 tcgcttctag tatacttgca aaaaatgaag ttaaaataaa taatgttcct aatgttgcag
     4681 acattaaaac actcatttct ttgcttgaaa atttaggcgc aaaaactgac tttaaagaaa
     4741 atacagcata tttagataca tcaacacttg ataaaaccgt ggccaaatat gatatcgtgc
     4801 gtaaaatgcg cgcttctatc cttactttag gacccttgct tgctcgtttt aatcattgtg
     4861 aagtttcatt gcctggagga tgtgctatag gacaaagacc tatcgattta cacctaagtg
     4921 ctttagaaaa aatgggtgca aatatagaaa taaaacaagg ttatgtcgta gcaagtggga
     4981 atttaaaagg agctcaaatt ctttttgata aaattaccgt tacaggcagc gaaaatatca
     5041 ttatggcagc agctttagct aagggaaaaa ctaagcttgt aaatgttgcc aaagagcctg
     5101 aagtcgtgca gctttgtgaa gttttagcca aggctgggct tgatataaaa ggcataggca
     5161 cagatgagct tgaaatttat ggcacagata aagaactttt ggattttaaa gaatttagtg
     5221 tgattcctga taggattgaa gcgggaactt atttgtgtgc aggagctatt acaaattcta
     5281 aaatcacact taaaaaagta aatgccgagc atttaggagc ggttttagca aaactccatc
     5341 aaatgggttt tgaaactttg gtagacaatg ataatatcac cttatttcct gcaaaagaaa
     5401 tcaaagctac ggagatcatg actagtgaat atcctggttt tccaaccgat atgcaagcac
     5461 aatttatggc tttagcccta atggcaaagg gtacaagcat catcgatgaa agactttttg
     5521 aaaatcgctt tatgcatgta agcgagcttt taagaatggg tgcggatatt aaattaaatg
     5581 ggcatattgc tactatagtg ggtggtaaag aattaaatgc tgcagatgtt atggctacgg
     5641 atttgcgtgc ttcttcggct ttgattttag cagcacttgt ggctaagggc acaagtagaa
     5701 tacatagaat ttatcatctt gatcgtggtt atgaaaaatt agaagaaaaa tttaaagcct
     5761 taggcgctaa aatcacaagg cttgaagaat gaaaaacatt tttcaaactt tagcgcattt
     5821 acaagatcaa attaaggctc ttaatgagtt tgaattaatc agtcttgaag aagctaaaga
     5881 tagggttttg gctaaagatc tctatgctgt aaaaaattta cctagctttg ataatgctgc
     5941 gcttgatggc tatgctttta attatgcgga tgcaaatcaa gctttagata taaaaggtac
     6001 gattttagct ggagataaaa acacttatga gatctataaa aatgagtgtt ttaagatcat
     6061 gacaggtgca aaaatgccca aaaatgccga tactatttta atgatagaag atgagtgtat
     6121 agaagaaggc aagcttgtca tcaaaaagcc acctaaacaa tacaacgctt atcgttataa
     6181 gggcgaagaa ttaaaaaaag atgagctttt gctaaaaaaa ggcacaaggc ttaatgctag
     6241 acatatcgct ctgctctcct ctcaagggct ttataaaata gaagttgtaa gaaaaattcg
     6301 tattggaatt ttttcaagtg gagatgagtt aaaagaacct tggcaagatt gtgatgagga
     6361 aaatatctat aatgctaatg ctttgccttt gcttgcttta tttaaagatt gcgctacaag
     6421 ttatcttggt attattaaag atgattttaa tgcaactaaa aaagctttag aaaatgctaa
     6481 ttttgatctt ttaatcactt caggtggtgc gagtgtagga gaagctgatt ttatggaaaa
     6541 ggctttaaat gaattaggct ttactccact ttttaagggt ttaaaagcac gccctgcaag
     6601 accaactaag ctttatcaaa aagataaaac tttagtattg attttaccag gaaatcctat
     6661 ggcagcttat ctttctgctt ttatctttgc tagaaaaatc atcgctttac tttacgggaa
     6721 tttagaaaat cctttacaaa ttcaagcttt tatggggagt gatttaaaag taaaaagtgg
     6781 aagaaataat cttatcttag ggaatttaga aaagggtatt ttttatcctt ttaatgataa
     6841 taaatttggt tcagggatga tactgcctct gattcaaagc gaatttttac tcatcagtga
     6901 agaagaaaaa gtagattttc aaaaagatga aagaatcatg ctttttaaac tttaatatat
     6961 taagatggtt attttaaaaa gtggatttat tttaaaagat attttagata aatgaaaaga
     7021 aaaataaatt tgtgaag
//
LOCUS       DBBXRO010000090         7013 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.091, whole genome shotgun sequence.
ACCESSION   DBBXRO010000090 DBBXRO010000000
VERSION     DBBXRO010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7013
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.091"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..169
                     /locus_tag="ACJFEZ_001364"
     CDS             <1..169
                     /locus_tag="ACJFEZ_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917476.1"
                     /translation="MFMGDIMPRVTKINETDYESRLVLAACVLEVMRFRAEVFEDDKP
                     IGFHFDFDLKR"
     gene            166..720
                     /locus_tag="ACJFEZ_001365"
     CDS             166..720
                     /locus_tag="ACJFEZ_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HGG0917477.1"
                     /translation="MKKVFLFAVAFVAMGILAFCLINKNQYDFNLRSAFKEQTTLEDF
                     KGKKLIVYFGYTFCPDICPSTLSLIGKNLKALKDPKAHVLFISLDISRDGNLTSTNEW
                     LRYFYPNADALIAKNDSVLKKVAKNYGVQYQKIDINDSVMKYSVAHSSEIFLIDENGK
                     LQKIIRDLNPEEVAKELKNFLSSK"
     gene            complement(726..1625)
                     /gene="cysK"
                     /locus_tag="ACJFEZ_001366"
     CDS             complement(726..1625)
                     /gene="cysK"
                     /locus_tag="ACJFEZ_001366"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HGG0917478.1"
                     /translation="MRVYKKVNELIGNTPIIQLEKFGANLFAKCEFLNPSHSIKDRAA
                     FAMIQSALNEGKIDSKTVIVEATSGNTGIALAMICADLGLQFVATMPESMSIERRKMI
                     TLFGAQLELTPASLGMKGAVDKANEILKNTPNSFMPSQFDNLANKNAHRKTTALEILK
                     DLDNDLDIFVAGFGTGGTISGVGEILKEKLGKIHVVAVEPLASPLLSKGEAGSHKIQG
                     IGANFIPAILNKDVIDEIITVSNEDAINTAKELAKNGLMVGISSGANVFAASVLAKKF
                     PDKKILTMLNDTAERYLSTDLFA"
     gene            complement(1753..2043)
                     /locus_tag="ACJFEZ_001367"
     CDS             complement(1753..2043)
                     /locus_tag="ACJFEZ_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HGG0917479.1"
                     /translation="MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSF
                     IGFGTFSTAERAAREARVPSTGKTIKVPATRVAKFKVGKNLKDAVAKAKKKK"
     gene            complement(2120..3961)
                     /gene="ciaB"
                     /locus_tag="ACJFEZ_001368"
     CDS             complement(2120..3961)
                     /gene="ciaB"
                     /locus_tag="ACJFEZ_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HGG0917480.1"
                     /translation="MNNFKELAKLVKNRKENINFFYDLLDSEQWGEYFERLLTLSELK
                     RDKTTLLAILRRLVDLKEENLIQEWKKNNFKEEKITKLKHKFYEEIRKFYEKEHQELI
                     YEIKERKIVNDFYQVLIQGVHNIGLVINAFEVSWTKEIIEKNNKILATQFPNLNDAME
                     FLRKNQLYQTTPKGDICERSYGVLVRIGNMWKFVPYARFFEDEILKLEFAFDDMIDKL
                     KQIAKNEDELAYIEYFQKLKLAFCEKEEEKVIGAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDESDFDALKFSKDIKQSFMRVYENIGIQDEQLKNEVLHNID
                     KTQLYVCAPMIYYGAELKGLFSAQVVPNDEFVSSIAGKKIFAFLNFVYENAKTKPFMR
                     IASEIFNKDFLDYGRDILFFKEKIWKRVYEVSTIGHEFGHIFFIAKDSEKLMNQSGFF
                     KNIEEYKATSGGLVNFFYHEQEDLKLPVFHELIKRAVSLIAWQRVEEVKPYYTEGLIH
                     LSLLFQSGVLKFENNRLNVNFNLEYYENFKDATLKNYHDLAKHYALKLDAKEFLNRFC
                     ALENDIFMPLYPECKEFVQFYYDLYEKIGNEIDNSGEFERYKMQKKS"
     gene            4026..4439
                     /locus_tag="ACJFEZ_001369"
     CDS             4026..4439
                     /locus_tag="ACJFEZ_001369"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HGG0917481.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKIVSVGKTSIGVEVEVSAQRVDSQGCTSC
                     INVTSALVTYVSVTREGKKKPISEELKKIHGFTNT"
     gene            complement(4485..4682)
                     /gene="kcuS"
                     /locus_tag="ACJFEZ_001370"
     CDS             complement(4485..4682)
                     /gene="kcuS"
                     /locus_tag="ACJFEZ_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HGG0917482.1"
                     /translation="MNFKKFKHYYEKAERFFHPLVGLSSYDKYLEHMKHKHPEKTPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(4663..6774)
                     /locus_tag="ACJFEZ_001371"
     CDS             complement(4663..6774)
                     /locus_tag="ACJFEZ_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HGG0917483.1"
                     /translation="MARFGTKILWLFVAALGAICFAHLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPAVLENDGRDFVPTNRTVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRRGRSLGEIIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGVYMRFIRPGRV
                     GEASVIGFILLILAIHYGSVIAADPYWAKIFTLEAPTLAIIMMAYGFIAAVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIIIVAPDLQMPKTNAQYFDGTGPVFAGAIFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALPVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGSDVASAAQAISSWGFSITPEEISTLTANIGEYTILSRTGGAPTFAIGV
                     ALILHELFGGIDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGNI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATAIL
                     VKMGKAKYTWVTLIPATFVLVATLYGGIQKVMPYEEGNKVGNAVSHVAAVTIQSQKIQ
                     DLELKLNHAKDENEIAAIEKEISVATQSKIGNLINAILCVFFMLATLLVILSCIGICL
                     GKIKIPLKETKYIKLDEFQKV"
BASE COUNT         2389 a         1244 c          988 g         2392 t
ORIGIN      
        1 tatgtttatg ggagatataa tgcctagagt tactaaaata aatgaaacag attatgagtc
       61 aagattggtt ttagctgcat gtgttcttga agttatgcgt tttagagctg aagtttttga
      121 agatgataaa cctataggtt ttcattttga ttttgatcta aaaagatgaa aaaggttttt
      181 ttatttgcag tcgcctttgt tgcgatgggt atactagctt tttgtttgat aaataaaaac
      241 caatacgact ttaatctaag atctgccttt aaagagcaaa ctactttaga ggattttaag
      301 ggcaagaaac ttatagttta ttttggttat actttttgtc ctgatatttg cccctctact
      361 ctctctttaa tcggtaaaaa tttaaaagcc cttaaagatc caaaagctca tgttcttttt
      421 atttctttag atatttctag agatggtaat ttaacttcaa ctaacgaatg gttaagatat
      481 ttttatccca atgcggacgc tcttattgca aaaaatgata gcgttttaaa gaaagtggct
      541 aaaaattatg gagttcaata tcaaaaaata gatatcaatg attctgtgat gaaatattcc
      601 gttgcgcata gtagcgaaat ttttctcatc gatgaaaacg gaaagctaca aaagatcatt
      661 agagatttga atcctgaaga agttgcaaaa gagcttaaaa attttctaag ctctaaataa
      721 aatttttaag caaaaagatc ggttgaaaga tatctttcag ctgtatcatt tagcatagta
      781 agaatttttt tatctggaaa ttttttagcc aaaacacttg ctgcaaacac atttgcacca
      841 cttgaaattc ctaccataag accgttttta gcaagctctt tagctgtatt tatagcatct
      901 tcattgctaa ctgtgatgat ttcatctata acatctttat ttaagatagc agggataaaa
      961 tttgcaccta taccttgtat cttatgactt ccagcttcac ccttactaag tagcggagag
     1021 gctaaaggtt ctacagcaac gacatgaatt tttcctaatt tttcttttaa aatttcacca
     1081 actccactga tagttccacc tgttccaaaa cccgctacaa aaatatcaag atcattatcc
     1141 aaatctttta atatttctaa ggcagtagtt ttgcggtgtg catttttatt ggccaaattg
     1201 tcaaactgcg atggcataaa agaatttggg gtatttttta aaatttcatt agctttatcc
     1261 actgcacctt tcatacctaa acttgcagga gttagttcaa gttgtgctcc aaaaagagtt
     1321 atcattttgc gtctttctat actcatagat tctggcatag tggcaacaaa ttgaagtcct
     1381 aaatctgcac aaatcattgc taatgcaata cctgtatttc cgcttgtagc ttcgactata
     1441 acagtcttag aatcgatttt gccctcattt aaagcgcttt ggatcattgc aaaagctgct
     1501 ctgtctttaa ttgaatgact tggatttaaa aattcgcatt tagcaaaaag atttgcacca
     1561 aatttctcta attgtattat aggagtattg cctataagtt catttacttt tttataaact
     1621 ctcataaaac caacctttca aaaatttagc ttcaagtaag tttataaaaa taaagtaaat
     1681 aaaggatata aattgtcgga ttaatttaaa ttttttattt aagcagggct agaaaaattt
     1741 ctagccttaa tattattttt tctttttagc ttttgcaaca gcgtctttaa ggtttttacc
     1801 cactttaaat ttagcaactc ttgttgcagg aaccttaatg gttttaccag tacttggcac
     1861 tcttgcttct cttgcggctc tttcggctgt tgagaaagta ccaaaaccta taaagctaac
     1921 gctatcacct ttagccaata catcagtgat agtagaaata actgcatcag tagcagcagt
     1981 agcatctttt tttgttagcc cagcagtttg agcaacttgc gaaatgaaat ctgctttagt
     2041 cataaaagct cctttgtttt atattgaaac gcctaattct agcatattta gaaaacaata
     2101 tcaagtaaaa acatgttttt taggattttt tttgcatttt atagcgctca aattccccac
     2161 tattgtcaat ttcattgcct attttttcat atagatcata gtagaattga acaaattctt
     2221 tgcattctgg ataaagaggc ataaaaatat cgttttctaa agcacaaaaa cgatttaaaa
     2281 attctttagc atcaagcttt aaagcataat gtttagctaa atcatgataa ttttttaaag
     2341 ttgcatcttt aaaattttca taatattcca gattaaaatt aacatttaat ctattgtttt
     2401 caaatttcaa aactccactt tgaaataata gtgataaatg aataagtcct tctgtataat
     2461 aaggcttaac ctcttcaact ctttgccaag ctatcaaaga tacagctctt ttaataagtt
     2521 catgaaaaac aggtaatttc aaatcctctt gttcatgata aaagaaatta acaagtccgc
     2581 cacttgttgc cttatattct tcgatatttt taaaaaaacc actttgattc ataagttttt
     2641 cactgtcttt agcgataaaa aatatatgac caaattcatg tcctatagta gaaacctcat
     2701 aaactctttt ccaaattttt tctttgaaaa ataaaatatc tcttccataa tccaaaaaat
     2761 ctttattaaa aatttcacta gcaattctca taaaaggttt tgttttagca ttttcataga
     2821 caaaatttaa aaaagcaaag atttttttgc ctgcaataga acttacaaat tcatcattag
     2881 gaacaacttg cgcagaaaac aaacccttaa gctcagctcc ataataaatc attggcgcac
     2941 aaacataaag ctgtgtttta tcaatattat gcaaaacttc atttttaagt tgctcatctt
     3001 gaattccgat attttcatat acgcgcataa agctttgctt gatatctttt gaaaatttca
     3061 aggcatcaaa atcactctca tcttctattc ttatatccca ctctaaagct acagcatgag
     3121 tgtaattatc ttcatagtat tctaaaggat gacctacttg taatggagat ttgactttca
     3181 tccatgcaaa ttcagcctct tgccacgctc ctataacctt ttcttcttcc ttttcacaaa
     3241 aagctagttt tagcttttga aaatactcta tataagctaa ctcatcttca tttttagcta
     3301 tttgttttaa tttatcaatc atatcatcaa aagcaaattc aagttttaaa atttcatctt
     3361 caaaaaatct tgcataagga acaaatttcc acatatttcc tattcttacc aaaacaccat
     3421 agcttctttc gcaaatatca ccctttggag ttgtttgata gagttgattt tttcgtaaaa
     3481 attccatcgc atcgtttaaa tttggaaatt gagttgctaa aattttattg tttttttcta
     3541 taatctcttt agtccaagaa acttcaaaag cattgataac taagcctata ttatgcactc
     3601 cttggataag aacttgataa aaatcattta cgatttttct ttctttgatc tcatagatta
     3661 gctcttgatg ctctttttca taaaattttc ttatctcttc atagaattta tgcttaagct
     3721 tggtaatttt ttcttctttg aaattatttt ttttccactc ctgtatcaaa ttttcctctt
     3781 taagatctac taagcgtctt aatatagcca aaagagttgt tttatctctt ttcaactcac
     3841 taagagttaa aagtctctca aaatactcgc cccattgctc agaatctaaa agatcataaa
     3901 aaaaattgat attttcttta cgatttttta caagttttgc taattctttg aaattattca
     3961 tacttttatt ctcctttttt aactttattg aattataatt cattttttaa aataaggagt
     4021 aaaaaatgag agatatggga gaaccaaaat taaaaattgt tgcaatgcca agtgatacca
     4081 atcccgcagg taatattttt ggtggatgga tactttcaca aattgattta gcaggcgcaa
     4141 tagcagctag agaactttct cctgaacgcg tcgtaactat atctatggat aaggtagttt
     4201 ttaaagagcc tgtttttata ggtgatataa tttcttgcta ttctaagatt gttagcgtag
     4261 gaaagacttc tataggtgta gaagtagaag ttagtgctca aagagtggat tcacaaggct
     4321 gtacttcttg cataaacgta acctctgcct tagttactta tgttagcgtt acaagagaag
     4381 gaaagaaaaa gcctattagt gaagaattaa agaaaattca tggatttaca aatacttaaa
     4441 gcttaatttt ttgtatgata aaaactttat ccttgttaag cttatcagca tttatttaaa
     4501 ccgccgctat tatatttttt atctaaacat tccttgaaaa attctcctct agtttttggg
     4561 gttttttcag gatgtttgtg tttcatgtgt tctaaatact tatcataact cgaaagtccc
     4621 actaagggat gaaaaaacct ttcggctttt tcatagtagt gtttaaactt tttgaaattc
     4681 atcaagttta atatatttgg tttcttttag tggaatttta atcttaccta ggcaaattcc
     4741 tatgcaagag agtatgacaa gcaatgtggc caacatgaaa aacacacaaa gaatggcatt
     4801 gattaaattt ccgatcttac tttgagtagc tacagaaatt tctttttcaa ttgctgcaat
     4861 ttcattttca tctttggcat ggtttaattt caattctaaa tcttgaattt tttgactttg
     4921 tatagtaact gctgccacat ggcttacagc atttcctact ttatttcctt cttcgtaagg
     4981 cataactttt tgtattcctc catatagggt tgctaccaaa acaaatgtag caggaattaa
     5041 agttacccaa gtgtattttg ccttgcccat ttttacaagt atggctgtag caagaagtaa
     5101 agccatacct gcaagcattt gattgcttac accaaagaga ggccaaaggg tataaatacc
     5161 gcctttagga tcaatcgcac cttgataaag aaaatatccc catcctgcaa cactcaatgc
     5221 ggttgctaaa agtccagctg gataattatg aatatttccc aaaggtttat agacattacc
     5281 taagatatct tgcaccataa aacggcaagc tctagttcca gcatccacag ctgttaagat
     5341 aaataaagct tcaaacaata tagcaaaatg ataccaaaaa gccattagat caataccacc
     5401 aaaaagctca tgtaaaatta aagctacgcc tatagcaaaa gttggagccc cacctgttct
     5461 agaaagtata gtgtattctc ctatatttgc agttaaagta gaaatttctt caggagtgat
     5521 actaaatccc caacttgaaa tagcttgcgc cgcacttgca acatcagatc ctattaaagc
     5581 agaacttgaa tttatagcaa aataaagtcc aggatgtaaa atacaagcac aaattaaagc
     5641 cataattgct acagcacttt ctgcaagcat agagccatat ccaacaggca aagcatgagt
     5701 ttcattttca agcatttttg gagtagttcc acttgaaata agagcatgaa aaccactaat
     5761 agcaccacaa gcaatggtta taaacaaaaa tggaaaaata gcacccgcaa atacaggacc
     5821 tgttccatca aaatactgag cattggtttt tggcatttgc aaatcaggtg caacgataat
     5881 aatagctaca gccattacaa caataacacc aatctttaag aaagtagaaa gataatctct
     5941 tggagccaat aaaaaccata caggtaaaac agctgcgata aagccataag ccatcataat
     6001 aattgccaaa gttggagctt ctaatgtgaa tattttcgcc caataaggat cagcagctat
     6061 aacactacca taatgaatcg ctagaatcaa aagtataaaa cctataactg aagcctcacc
     6121 tactctacct ggacgaataa agcgcatata tactcccata aaaattgcta taggaatagt
     6181 cattgcaatg gtaaataatc cccaaggtga ctctgcgaga gcttttacaa ctaccatagc
     6241 taaaatagcg atgataataa gcatgatacc aaaaattgct accattgcaa caccaccggt
     6301 aaatttaccc atttcatctt tgataatttc gcctaaactt ctacctcttc tacgagtgga
     6361 tataaaaagc acaacaaagt catgaaccgc acctgctaaa acacctccca ctaaaatcca
     6421 aagcatagaa ggtaaatatc ccatctgagc agccaaaata ggacccacta aaggaccagc
     6481 acctgcaata gcagcaaaat gatgtccaaa caaaactgtt ctatttgtag gaacaaaatc
     6541 gcgtccatca ttttctaaaa ctgcaggtgt agcacgattt ttgtcaagtt ctaaaacctt
     6601 atacgctaca aagcgtccat aaaatctata tcctatcata tagatacaca cagcagcaac
     6661 tactagataa attgctgata cactctcgcc attttgtaaa gctaaatgag caaaacaaat
     6721 agcacctaaa gctgcgacaa acaaccataa aattttagtt ccaaaacgag ccatagttct
     6781 cctaaaataa taaaaatatt tcaaaggata ccaaatttat aaataaattt aataaaatgt
     6841 ttgtttagtt tttttacatc gtataaaaaa atattctttt tgtttcttta agtgacattt
     6901 tcaaaaaaaa taaacatgca atcttgtatt attttttatg actattttta agacaagttt
     6961 tattaaagtt aaaaatattt atagaatgtt gctttatttt gttaaaagtt tgc
//
LOCUS       DBBXRO010000091         6994 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.092, whole genome shotgun sequence.
ACCESSION   DBBXRO010000091 DBBXRO010000000
VERSION     DBBXRO010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6994
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.092"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(159..968)
                     /gene="tupA"
                     /locus_tag="ACJFEZ_001372"
     CDS             complement(159..968)
                     /gene="tupA"
                     /locus_tag="ACJFEZ_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter substrate-binding
                     protein TupA"
                     /protein_id="HGG0917484.1"
                     /translation="MKKIISLALALALSASAAELRMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKDFVSKGFGVDRTPVMYNDFIII
                     ADKSLAPKFKDKTLKESLELIKNEKLTFISRGDKSGTDNKEKALWKDLGGVPEKESWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGNPNLVIVNEGDDNLKNFYSII
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNVISEFKLLNKPLFIVDAKTRKD"
     gene            1051..1737
                     /gene="tupB"
                     /locus_tag="ACJFEZ_001373"
     CDS             1051..1737
                     /gene="tupB"
                     /locus_tag="ACJFEZ_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter permease TupB"
                     /protein_id="HGG0917485.1"
                     /translation="MDYILEGFTQALFLLFNADESVISAIKTTLFSSSISIVLSLIVG
                     FPLGFALGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGDLGLLFTVKA
                     LILGQFVLALPIVIALFSNLIENMNKKHFLLIKSLHLSPLKLVMTIIYELRFALVSVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLIFIAFIL
                     NFIIHKLKRY"
     gene            1738..2733
                     /gene="tupC"
                     /locus_tag="ACJFEZ_001374"
     CDS             1738..2733
                     /gene="tupC"
                     /locus_tag="ACJFEZ_001374"
                     /EC_number="7.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter ATP-binding protein
                     TupC"
                     /protein_id="HGG0917486.1"
                     /translation="MIELCNFKFNYGQKNILNIKHLCLDTDKISILMGSNGSGKSTLL
                     RILKFLEGEFDNITYFGNKHLNSDEKRQIYLLFPEPVFLNRSVEKNFYFLLKTYKLDS
                     KEIKKRLNEVLNLLEIDRSLLKKYPSELSSGQGQKIAFALALSVRAKYYLLDEPSAFL
                     DKDTMILFKKAILYMQKTYKSGFLIASHDKNFLDSLAQKKYYLHAGEILEFENTNIFE
                     LENKGVNFSNFIDFSMCKNYICKDEISNKIAIDPYKISFLYPDDFSKQTFDFILQKCI
                     IIALRTRKEFVFIRVECGGKILEFALESERFKQEKLSLYQELCLVFNEEAICFLN"
     gene            2874..4847
                     /gene="acs"
                     /locus_tag="ACJFEZ_001375"
     CDS             2874..4847
                     /gene="acs"
                     /locus_tag="ACJFEZ_001375"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HGG0917487.1"
                     /translation="MRYQNTQGLFKPNKQLSRNARIKNLCEYYDLCDEVREDFEGFWK
                     RQALEKIDWFSPFSRVLNDDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAAIVFEGE
                     MGDYEVYTYRRLLHEVCKAANLLKRFGVKKGDRVIIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYVKGRDYIYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQVSKFYTSPTAIRMLHADAPDEPKKYDLNTLEVLGTVGEPINP
                     SAWQWFYENIGNSKCSIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNVKDVAEDGLLCITKPWPSMIRGIWGDENRYIESYFSQAKKEGKPVYFSGDGAFY
                     DDNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSVLDAIKGESLFAF
                     VVLNPTSSCDLGGAIETLKELNDILRAEIGPIAKIEKILYTTGLPKTRSGKIMRRILR
                     TIARGEELKQDISTLEDSGVVQSIIDAAKTGIQ"
     gene            4955..5779
                     /gene="galU"
                     /locus_tag="ACJFEZ_001376"
     CDS             4955..5779
                     /gene="galU"
                     /locus_tag="ACJFEZ_001376"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HGG0917488.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKALPKEMLPILTKPLIHYGVDEAL
                     EAGMDNMGFVTGRGKRALEDYFDISYELEHQISGTNKEYLLKDIRSLIHRCTFTFTRQ
                     NEMRGLGDAVLKGRPLAGDEAFGVILADDLCINEEGVNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSSYGVIAGNFVEEDLIMVNSMIEKPSPQEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFKGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            5773..>6994
                     /locus_tag="ACJFEZ_001377"
     CDS             5773..>6994
                     /locus_tag="ACJFEZ_001377"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HGG0917489.1"
                     /translation="MLNNTLFFKESEIRTISSYANRINDEVESGDIGYYHLIDTSLTL
                     IDESLNFIQDKEHVKNIVLVGMGGSSCGVKALRDMLFDEKSNQRELFILDNTSSHSFS
                     RTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDIQELKKYFIFITDKDSKLH
                     KEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFIHKK
                     DEILQKAYHYCTHKSANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHDLL
                     NAQCDATMHALIAENLSVDMIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILRSQ"
BASE COUNT         2282 a          966 c         1325 g         2421 t
ORIGIN      
        1 tactcaaaga catatacaaa atataaaaat atcagctcta agcggtgtgg gaataatttt
       61 tatgctgata tattttttat cctctttttt tatcattgtt gtatttaaaa tgaaaaagat
      121 aaaatgagtt tttaagcaag gaaattcctt gcttgaattt aatcttttct tgtttttgca
      181 tccactataa ataaaggttt gttaagaagt ttaaactcac tgataacatt caaagtctta
      241 tcgcttgtta cccatttgat aaatttgcta gcctctgtgt aatttacatt tttacaatgc
      301 tttggatttg tagcgattat agagtagaaa tttttaagat tgtcatcgcc ttcatttacg
      361 atcactaaat taggattgcc tttttcattg gcttcgtatt tgatataagt gccacgatcg
      421 gttaaaatca cgcctttttt ttcttctgcg attttgatac ttgctaacat tccttgtccg
      481 ctttgttgat accagctttc tttttcgggt acaccaccaa gatctttcca aagagctttt
      541 tctttgttat cagtgcctga tttatcgcct cttgaaatga aagtaagttt ttcatttttg
      601 ataagttcta ggctttcttt taaagtttta tctttaaatt taggagctaa agatttatct
      661 gcgataatga taaaatcatt atacattaca ggcgttctat ctacgccaaa acctttgctc
      721 acaaagtctt tttctgcttt tggagaatgc acaaaaagca catcagcatt gcaatcttca
      781 cccattttta aagccgcacc cgttcctaca gcgacccatt ttaaggtatt gccactttct
      841 ttttcataga gcggctttaa agcatctaaa agtcctgtgt tatcggtgct tgttgtagtt
      901 gccattctaa gttctgctgc gcttgcactt aaggctaagg caagagctaa agaaatgatt
      961 tttttcattt tgtctcctaa ttaaaatttt acttaaaaaa tattgtaaca taattatgct
     1021 aaaattactt atttaaaata aggaaacttt ttggattata tcttagaagg ctttactcaa
     1081 gctctatttt tgctttttaa cgctgatgaa agcgttattt ctgcaatcaa aacaacactt
     1141 tttagctcca gcatttctat cgttttatct ttgattgtag gttttccttt gggctttgct
     1201 ttaggttttt ttgaatttaa attgaagcgt tttataaaac ttatagttga taccagtctt
     1261 tcttttccta cggttgcggt tgggcttata ctttatgctt tgatttcaag cagagggcct
     1321 ttgggggatt taggcttgct ttttactgta aaagcattga ttttagggca gtttgtttta
     1381 gctcttccta ttgttatcgc acttttttct aatttgatag aaaatatgaa taaaaagcat
     1441 tttttactca tcaaatcttt acatttaagc cctttaaagc ttgtgatgac tatcatttat
     1501 gagttgcgtt ttgctctagt aagcgttgtg gctttagctt atggcaggat agttgctgaa
     1561 gtaggagtag cgatgatagt gggtggaaat atcaaatacg atactagaac tattaccaca
     1621 gccatttccc ttgaaaccaa caaaggtgaa tttgctagcg gtattgctct tgctttagtt
     1681 ttgattttca tcgcttttat tttaaatttt attatacaca aactcaaaag atattaaatg
     1741 atagaacttt gtaattttaa atttaattat ggacaaaaaa atattttaaa tatcaaacac
     1801 ttatgtttag atactgataa aatcagtatt ttaatgggtt caaatggaag tggaaaatct
     1861 acacttttaa gaatactcaa atttcttgaa ggagaatttg ataatatcac ttattttggc
     1921 aataagcatt taaattcaga tgaaaaacgc caaatttact tactatttcc cgagcctgtc
     1981 tttttaaatc gcagtgtaga aaaaaatttt tattttttgt taaaaactta taaattagac
     2041 agcaaagaga ttaaaaaacg ccttaatgag gttttaaatt tacttgaaat tgatagaagt
     2101 ttgttaaaaa aatatcctag cgagctttca tctggacaag ggcaaaaaat agcatttgct
     2161 ttagctttaa gtgttagagc gaagtattat ttacttgatg agccaagtgc ttttttggat
     2221 aaagatacga tgatattgtt taaaaaagct attttatata tgcaaaaaac atacaaaagt
     2281 ggttttttaa tcgctagtca tgataaaaat ttcttagact ctttggcgca aaaaaaatat
     2341 tatttgcatg caggagagat tttagaattt gaaaatacaa atatttttga actcgaaaac
     2401 aaaggtgtga attttagtaa ttttatagat tttagtatgt gtaaaaacta tatttgcaaa
     2461 gatgaaattt caaacaaaat agctatcgat ccttataaaa tttctttttt atatcctgat
     2521 gatttttcca aacaaacatt tgattttata cttcaaaaat gtatcatcat agcacttaga
     2581 acaagaaaag aatttgtttt tatcagagtg gagtgtggag gtaaaatttt agaatttgcc
     2641 ttagaatcag agcgatttaa acaagaaaaa ctaagcttgt atcaagaact ttgcttagtt
     2701 tttaatgaag aggctatttg tttcttaaat taacataatt tagaaatgtt ttctttaatt
     2761 tattacaaat attcacattt ttgtaatttt cttcattaat tatttttaaa tttgtataaa
     2821 acacaaaaaa agtcttatat aatgtttata aataacttaa agaaggagga tttatgcgtt
     2881 atcaaaatac tcaaggactt tttaaaccta acaaacaact ttctcgcaac gcaagaataa
     2941 aaaatttatg cgaatattat gacttatgcg atgaggtaag ggaagatttt gaaggttttt
     3001 ggaaaagaca agctcttgaa aaaattgatt ggttttcgcc tttttctcgt gttttaaatg
     3061 atgataaagc cccattttat aaatggtttg agggtgggac tttaaatgta agttatcagt
     3121 gcttagatcg ccatatgaaa acaagacgca ataaagctgc tattgttttt gaaggggaaa
     3181 tgggtgatta tgaggtttat acttatcgta gattattgca tgaagtttgc aaggcggcaa
     3241 atttacttaa acgctttggt gtaaaaaaag gcgatagggt tataatttat atgcctatga
     3301 ttccagaaac ggctattgtt atgttagctt gtgcaagaat tggagctatt catagtgtgg
     3361 tatttggagg cttttcgcct gaagctttaa gagatagaat catagatgca ggagccaaac
     3421 ttgtagtaac agccgatgga gcttttcgtc gtggcaagcc ttatatgtta aaacctgctg
     3481 ttgataaggc tttgagtgaa ggttgtgaaa gtgtagaaaa agtgcttata gttatacgca
     3541 ataacgaacc tatagaatat gtcaaaggaa gggattatat ctataatgag ttagtaaaaa
     3601 atgaatctta taaatgcgaa cctgaaatta tggatagtga agatttgtta tttttacttt
     3661 atacttcagg ttctacgggc aagccaaaag gagtaatgca tgcaagtgca ggttatatac
     3721 tttgggcgca aatgactatg gaatgggtat ttgatataaa agattatgat aattattggt
     3781 gtagtgcgga tgtgggttgg atcacaggac atacttatgt tgtttatggc cctttagcat
     3841 gtggagcaac tactattatg catgaaggaa cgcctactta tccaaattca gggcgttggt
     3901 ggagaatgat agaagagtat caagtgagca aattttatac ttcgcctact gctataagaa
     3961 tgcttcatgc agatgctcct gatgagccta aaaaatatga tttaaacact cttgaagtgc
     4021 ttggaactgt tggagaaccc atcaatccta gcgcttggca gtggttttat gaaaatatag
     4081 gaaattcaaa atgctccatc gttgatactt ggtggcaaac tgaaacagga gggcatatga
     4141 taacaccttt acctggagct actcctttaa aaccaggttg tgctaccttg cctttaccag
     4201 gaatttttgc agaagttatt gatgaagagg gtaatgtaaa agatgtggct gaagatggct
     4261 tgctttgtat taccaagcct tggccttcga tgattcgtgg aatttgggga gatgaaaacc
     4321 gctatataga aagttatttt tcacaagcca aaaaagaagg aaagccagtt tattttagcg
     4381 gggatggggc tttttatgat gataatggct atattactat cacgggaaga actgatgatg
     4441 tggttaatgt tgcagggcac cgtataggaa cagctgaaat agaaagtgcc atcgctaaac
     4501 atccaagcgt agcagaatca gcagttgtaa gtgtgcttga tgcgattaag ggtgagtctt
     4561 tatttgcttt tgtggtttta aatccaactt caagttgtga tttaggaggg gctatagaaa
     4621 ccttaaaaga attaaatgat attttaagag cagagattgg acctatagct aagatcgaaa
     4681 aaattcttta tactacaggc ttgcctaaaa caagaagtgg taagattatg agaagaattt
     4741 taagaaccat agcaaggggc gaggaattaa aacaagatat ttcaactctt gaggattcag
     4801 gagtggttca aagtattatc gatgcagcta agacaggaat ccaataaggc aaaaaattct
     4861 ttgccttatt tttaaataca tgttaaactt agttttgatt tatttaaaaa ttgtagtttt
     4921 tggttataat accaaaaaca aataaaggat aatgatgctt caaacttgta tttttcctgc
     4981 agcaggatat gggactaggt ttctacccgc aaccaaagct ttacctaaag agatgttgcc
     5041 tatacttacc aaacctttga ttcattatgg agtagatgag gctttagaag caggtatgga
     5101 taatatgggt tttgttacag gtcgtggaaa aagagctttg gaggattatt ttgatatttc
     5161 ttatgagctt gagcatcaaa tttcgggtac aaataaagag tatttgttaa aagatatccg
     5221 ctctttaatt catcgttgta cttttacctt tacaagacaa aatgaaatgc gcgggctcgg
     5281 cgatgcggta ttaaagggta ggcctttagc aggcgatgag gcttttggtg tgattttggc
     5341 tgatgatttg tgtatcaatg aagagggtgt taatgtgatg gcacaaatgg ttaaaattta
     5401 tgaaaaatat cgttgcacca tcatagctgt tatggaagtt ccaaaagagc aagtatcaag
     5461 ttatggagtg attgcaggaa atttcgtaga agaggatttg atcatggtaa attcaatgat
     5521 agaaaaacca tctcctcaag aagctccaag caatcttgct atcataggaa gatatatttt
     5581 aactcctgat atttttggaa ttttagaaaa tactaaagca ggaaaaaatg gagaaattca
     5641 actcacagat gcacttttaa cccaagcgac taatggtatg gttttagctt acaaatttaa
     5701 gggaaaacgc tttgattgcg gaagtgtaga gggctttgta gaggctacaa attattttta
     5761 tgagaaaagt aaatgctaaa taatactctt ttttttaaag aaagtgaaat tcgcactata
     5821 agttcttatg caaatcgtat caatgatgaa gtagaaagtg gggatatagg gtattatcat
     5881 cttatcgata caagtttaac cttaatagac gaaagcttaa atttcattca agataaagag
     5941 catgtaaaaa atatcgtttt agtgggtatg ggtggttcaa gttgcggtgt taaagctttg
     6001 cgtgatatgc tttttgatga aaaaagtaat caaagagaac tttttatact tgataatacc
     6061 agttcgcact cctttagcag gactttagag aaaatcaagc ttgaagaaag tttgttttta
     6121 atcatcagta aaacaggtag cactatagaa gtagtatcgc tttttaagct tcttatagaa
     6181 cattttaaac tcgatataca agaattaaaa aaatacttta tttttatcac agataaagat
     6241 tctaaactgc ataaagaggg tgagaattta ggcatcaaat gcttttttat ccctgcaaat
     6301 gtaggagggc gttttagcat actttcagct gtgggtatag tgccactttg tttttgtggt
     6361 tataatgcta aagctctttt agaaggagct aaggcatgct ttgaagattt ttttatacat
     6421 aaaaaagatg aaattttgca aaaagcttat cattattgta ctcacaaaag tgcaaatatc
     6481 aatgtacttt tttcttacag cgatgctttt aagggtttta atgaatggta tatccagctt
     6541 attgctgaaa gtttgggtaa aaaacaaggc tacaaacgca taggtttaac tcctattgca
     6601 ctcattggcg caagagatca gcatagtttt ttacagctca ttatggatgg acctaaaaat
     6661 aaaactgtaa cttttttaaa aatcaaagac gctcaaaaag cgcctattat ccctgatatt
     6721 cattttaaat ttttagattc tttaagcaat aaagtcaatt tacacgatct tttaaatgct
     6781 caatgcgatg cgacaatgca cgctttgatc gctgaaaatt tgagtgtgga tatgatagaa
     6841 cttgaaaaac tagatgcatg gcatgcggga tatttgatgt attattatga gctttttact
     6901 tcaacttgcg gggtaatgtt aggaattaat acttatgatc agcctggagt tgaggttggg
     6961 aaattgattt taaaaaatat tttaagatcg cagt
//
LOCUS       DBBXRO010000092         6812 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.093, whole genome shotgun sequence.
ACCESSION   DBBXRO010000092 DBBXRO010000000
VERSION     DBBXRO010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6812
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.093"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            49..123
                     /locus_tag="ACJFEZ_001378"
     tRNA            49..123
                     /locus_tag="ACJFEZ_001378"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:82..84,aa:Glu,seq:ttc)
     gene            284..691
                     /locus_tag="ACJFEZ_001379"
     CDS             284..691
                     /locus_tag="ACJFEZ_001379"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HGG0917490.1"
                     /translation="MSHDTNFFLLYFKDKIPKDSLIFLKESLEKASEEQKEKLLFTKL
                     KNPLYGLLFAFLLPGLDRIYNGNIILGILKIISAILVSIGLIIAEDKNDESTMLIFIN
                     LFFILSVWVILDYFLVWKDICQNNLKKIFEVLQ"
     gene            849..1115
                     /locus_tag="ACJFEZ_001380"
     CDS             849..1115
                     /locus_tag="ACJFEZ_001380"
                     /inference="COORDINATES: protein motif:HMM:NF017007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HGG0917491.1"
                     /translation="MGLFGVDRFYKGDILLACIKLAFFIIPLFATFAAFIALLDESHS
                     IFIDYFAIFALMFVVASIWKLVDIYLVFVGIKKDNFHKILNFFS"
     gene            1221..1883
                     /gene="sodB"
                     /locus_tag="ACJFEZ_001381"
     CDS             1221..1883
                     /gene="sodB"
                     /locus_tag="ACJFEZ_001381"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HGG0917492.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFASKDLVSIIKSSSGGVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
     gene            complement(1910..3115)
                     /locus_tag="ACJFEZ_001382"
     CDS             complement(1910..3115)
                     /locus_tag="ACJFEZ_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HGG0917493.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     SFIKERLGVEIQTAQIDADDSDAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YVDTANYEHPDLAKFEYKEQWARNDKFKEAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWEKGEWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVM
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGIKDGKDRQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMDELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(3151..4059)
                     /locus_tag="ACJFEZ_001383"
     CDS             complement(3151..4059)
                     /locus_tag="ACJFEZ_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0917494.1"
                     /translation="MMLEIKNLSKNFGKIQALKNINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAQLEQASSCEFLKCKGEVAMMFQNYALFPHLNVEKNILFALYDKKDKKQILEDL
                     LKTFEIENLRYKKIDEISGGQAQRVAFARAVARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKLIQKQKITAIMVTHDIEDAYCMSDKIAFLDKGEILAHADPKELYFKPNHKSARIL
                     PDLNIIEEELDLEDEFFQWIASKNYTFGYAELKIGNRFEATILQKEFLGAFYRLKVRY
                     KNIDFFMLLSSNYTLKEKINFDIINF"
     gene            complement(4043..5659)
                     /locus_tag="ACJFEZ_001384"
     CDS             complement(4043..5659)
                     /locus_tag="ACJFEZ_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0917495.1"
                     /translation="MLKTLKYYKIGAILLALFLTLPIFGIFAELFYILFQNFNTSNLA
                     EISSIKENLSHFFDYLFLKFIKDTLIVSIGVLLLSLILGVSSAYLMANYNFYFCRILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHEVFGFRIDFFNHYGVIFVLGISLYPYIYL
                     FAKTAFKSEAIEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSILSGILMIFVFLIMYIDYYYKNKHHYSFNQNL
                     TLFIKKRKLSHIKQILACFYCFIIALLGFILPFIWLVYWGLKDFKLFEAEFYIISFQT
                     IILAFITALITTLLAYFLMFSSRIIKNNFFSLCILKLSSLGYSIPAAALGISMIVLFV
                     FLDKIFHLNLLGTSLIILVFAYIIRFLASAIYSLEGGYNKIHLNTDEASLNLRPSYLI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLLIVLLSLIVVIWMDKITRKDDVRN"
     gene            complement(5659..6663)
                     /locus_tag="ACJFEZ_001385"
     CDS             complement(5659..6663)
                     /locus_tag="ACJFEZ_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009881850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HGG0917496.1"
                     /translation="MKKIFSLCLLGFSLLGAAELNIYSARHYDADFQIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNSGLLSPVKSKYLEDTIP
                     AHLRDKDGEWFAITKRARIIAYNKNANTDISKMKNYEDLAKPEFKGQIVMRSATAPYS
                     KTLLASIIANDGDENAKVWAKGVLDNLATKPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQEAAKKFMEFMLTP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSQIAEKVKEAVKIYDQVGFR
                     "
     gene            complement(6664..6786)
                     /locus_tag="ACJFEZ_001386"
     CDS             complement(6664..6786)
                     /locus_tag="ACJFEZ_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917497.1"
                     /translation="MKKLVLFLFCLGFAFACSEHSNADFKDHDKTKYNSQYKDK"
BASE COUNT         2306 a         1103 c          975 g         2428 t
ORIGIN      
        1 aaaaatatat aattcaactt cgtttttatt tttactcctt ttaaaagtgg cccattcgtc
       61 tagcggttag gacatcgccc tttcacggcg gtaacacgag ttcgagtctc gtatgggtca
      121 ccacttaaat ccttttttaa tatttccgaa atcaatcata gatgttcttt aggatttttg
      181 cttaatattt ttattgtttt tcataaaaat ggatttataa acttataaga attttatttg
      241 tagaattttt tgttttatta gaatgatgag gattaataaa caaatgagcc atgataccaa
      301 ttttttcttg ttatatttta aagataaaat tccaaaggat tctttaattt ttcttaagga
      361 aagtttagaa aaagcaagcg aagaacaaaa agaaaagctt ttatttacca aactgaaaaa
      421 tcccctatat ggacttttat ttgctttttt gcttcctggt ttagatagaa tttataatgg
      481 caatataatt ttaggtatac ttaaaatcat atcagcaata cttgtttcta taggtttaat
      541 aatagcagaa gataaaaatg atgaaagcac tatgctgatt tttataaatt tatttttcat
      601 actaagtgtt tgggtgattt tggattattt tttggtatgg aaagatattt gtcaaaataa
      661 tcttaaaaaa atttttgaag ttttacaatg aagcaagata aaacgatatt gctcatattt
      721 aaagataaga ttcccgaaga aaggctattt atcttagagg aagaattaaa aaaagccaaa
      781 aagatctaag tgctctttat gctatctctc ttaaaaatcc tttggttggc cttgtattaa
      841 gtataactgt gggattattt ggggttgata gattttataa gggcgatatc ttgttagctt
      901 gtattaaatt agcttttttt ataatacctt tatttgctac ttttgctgct tttatagcat
      961 tgttagatga gagccattcg atttttatag attattttgc catttttgct ttaatgtttg
     1021 ttgttgctag catttggaag cttgtagata tttatcttgt ttttgtaggt attaaaaaag
     1081 ataattttca taaaattctt aattttttct cttaaaaaat gtcttggaaa tttaaagaaa
     1141 taattaaaga ctttcttagt ctttttatat aatttttatg ctacaatatt ttgtcaaact
     1201 actaaattaa aggagaaatt atgtttgaat taagaaaatt accttatgat accaatgctt
     1261 ttggtgattt tttaagtgct gaaactttta gttatcatca tggaaaacac cacaatactt
     1321 atgtaacaaa tcttaataat cttatcaaag atactgaatt tgcaagtaaa gatcttgtaa
     1381 gcattattaa aagttcaagt ggtggagtat ttaacaatgc tgctcaagtt tataatcatg
     1441 atttttattt tgattgcatt aaaccgatca caggctgtgg ctgtggtggc tcatgccaaa
     1501 gtatggatgc taatttacaa gcagctttag aaaaagaatt tggttcttta gagaatttca
     1561 aagctgaatt tatcaaaggt gcgacagggg tttttggttc aggttggttt tggttagttt
     1621 ataatactaa aaatcaaaaa ttagaatttg tgggtacttc aaatgcagct acacctatca
     1681 ctgaagataa agttccttta cttgttgtgg atgtttggga gcatgcttat tatgtagatc
     1741 atcgtaatgc gcgtcctgcg tatttagaaa aattctatgc tcatattaac tgggaatttg
     1801 tagcaaaagc ttatgaatgg gctttaaaag aaggtatggg atcagttagc ttttacgcaa
     1861 acgaacttca tcctgtaaaa taatacaagg catcttaaaa gatgcctttt tactctccta
     1921 aacttggagt catttcgata atcttccatg gaagtccttg agaattaagc tcatccataa
     1981 aaggttttgc gtcaaattct tccatattaa acacaccttt tccttgccaa attcctttag
     2041 cgattagttt tgtacctatc atcgcaggaa ctcctgtagt gtagcttacc gcttgtgcgc
     2101 cggtttcttt ataacattct tcgtgattgc aaacattata aatataaact tgtctgtctt
     2161 tgccatcttt tataccacgg attacacaac ctatattggt ataacctttt gtgcgaggac
     2221 ctaaacttgc aggatcagga agtagggttt ttaaaaattc tataggaatg atttctttac
     2281 cttgatgcat cacaggtttt atacctagca ttccaacatt ttcaaggcat ttcatatgag
     2341 ttaaataact ttgtccaaaa gtcataaaaa agcgaattct cttcaagccc ttgatatttt
     2401 ttaccaagct ttcaagctct tcgtgataaa gtaagtaact atcttttacg cctacttcag
     2461 gataatccca ttccattttt atttccatcg gttgtgtttc tatccactcg cctttttccc
     2521 agtagcgtcc cttagcagaa acttctctaa gattgatttc gggattaaaa ttagtcgcaa
     2581 aagcatagcc atgatcgcct gcgttacaat ctaaaatatc tatataagaa atttcatcaa
     2641 ataaattttg ctgcgcataa gcacaaaaaa catttgtaac gccaggatca aacccacttc
     2701 ctaaaagtcc taaaattcct gcttctttaa atttatcatt tcttgcccat tgttctttat
     2761 actcaaattt agctagatct ggatgctcat agtttgctgt atcaacataa tcaattcctg
     2821 cttttatgca agcatccatc aagcttaaat cctgataagg caaagctaca ttaagcaaaa
     2881 tttgcgcccc tgttttttta ataagctcta caaccgcatc gctatcatct gcatcaattt
     2941 gtgcggtttg aatttctact cctagacgct ctttgataaa actagcaatt tcatcgcatt
     3001 tgcttttggt tctacttgct agagtgattt tactaaaggt atctgaattc attgcgcatt
     3061 ttacggtagc tacgcgactt accccgcctg cgcctataat taaaagattt ttcattggtc
     3121 gtgtccttaa agaaatttta ggaattttag ctaaaaattg ataatatcaa aatttatttt
     3181 ttcttttagc gtgtaatttg agctgagcaa cataaaaaaa tctatatttt tatatcttac
     3241 tttgagtcta taaaaagctc ctaaaaattc tttttgcaaa attgtagctt caaaacgatt
     3301 tcctatttta agttctgcat agccaaaagt ataatttttt gaagcaatcc actgaaaaaa
     3361 ttcatcttct aaatcaagct cttcttctat gatatttaaa tcaggtaaaa ttctagcact
     3421 tttatgatta ggcttaaaat aaagctcttt aggatctgca tgagctagaa tttctccttt
     3481 atcaagaaag gcgattttat cagacataca ataagcatcc tcgatatcgt gagttaccat
     3541 aatggctgta attttttgtt tttgtatgag tttttttagc tctcttctta agtcttgttt
     3601 taaattctga tctaaattag aaaaaggttc atctaaaagc aaaagtttac agcctcttgc
     3661 tactgctcta gcaaaagcca ctctttgcgc ttgtccgccc gaaatttcat caattttctt
     3721 atatcttaaa ttttcaattt caaaggtttt taacaaatcc tctaaaattt gttttttatc
     3781 ttttttatca tagagtgcaa aaagtatatt tttttcaaca tttaaatggg gaaataaagc
     3841 atagttttga aacatcatcg ccacttcgcc cttgcatttt aaaaattcac aagagctcgc
     3901 ttgttctagt tgggcgatga ttcttaaaag tgtactttta ccacttccgc tccctcctaa
     3961 aatgcttaaa aattctcctt ctttaacatg aagattgata ttttttaaag cttgtatttt
     4021 gccaaaattt tttgataggt ttttaatttc taacatcatc tttccttgtg attttatcca
     4081 tccaaataac aactattaaa gaaagtaaaa caatgagcag cgaaggcaaa gcagcatcat
     4141 aaattctctc atcacttgca aaccaaaaag cttttacact tagagtttca aaaccaaaag
     4201 gagctaaaat tctactcaaa ggaagctctt ttatggtatc gataaaaaca atgataaaag
     4261 ccaaaaataa aaaatgtttc attaaaggag tatgaatttt aaaaaataag atcaaataac
     4321 tcggccttaa atttaaactt gcttcatcgg tgttaagatg gattttatta taaccccctt
     4381 ctaaagaata aattgcactc gctagaaaac gaataatata agcaaaaact aaaataatca
     4441 atgaagtgcc taataaatta agatgaaaaa ttttatctaa aaacacgaaa aggacaatca
     4501 tgctaattcc taaggcagcc gcaggtatag aataacccaa agaacttagc ttaagaatac
     4561 ataggctgaa aaagttattt tttatgattc ttgagctaaa cattaaaaaa taagccagta
     4621 aagtcgtaat caaagctgtg atgaaagcta gtataatggt ttgaaaacta atgatataaa
     4681 attctgcttc aaaaagttta aaatctttta gcccccaata aacaagccat ataaaaggca
     4741 agataaatcc taataaagcg atgataaaac aataaaaaca ggctaaaatt tgctttatat
     4801 gacttaattt cctttttttg ataaaaagag ttaaattttg attaaaacta taatgatgct
     4861 tgtttttata ataataatct atatacatga ttaaaaaaac aaaaatcatc aaaattcctg
     4921 ataaaatact cgatgaataa gaatcattta aatcatacca gagtttaaaa attccagccg
     4981 aaaaagtatc tactcccaaa taagcacttg caccataatc actcaaagtt tccattaaaa
     5041 ccaataaagc tccagaaaaa atggcaggcc ttgcgctcaa aagtgccacg cgtgtaaaaa
     5101 ttctaaattc agaatatttc atgattttag ctacttcata agcttctatg gcttcgcttt
     5161 taaaagcagt tttggcaaat aagtaaatat aaggatataa agaaattcct aagacaaaaa
     5221 taactccata gtggttgaaa aaatctatcc taaaaccaaa aacttcatga aaaaagccct
     5281 gaaaatccat aattccaaca tatacaaaag ctaaaatata agcaggtatt gccaagggta
     5341 aaatgagtaa tttttctaaa atcctacaaa agtaaaaatt ataatttgcc atcaaataag
     5401 cactacttac acctaaaatc aagcttagta ataacacccc tatactaact atcaaagtat
     5461 ctttgatgaa ttttaaaaac aaataatcaa aaaaatgact caaattttct ttaatggatg
     5521 aaatttcagc caaattgctt gtattgaaat tttgaaaaag aatataaaaa agctcagcaa
     5581 agatgccaaa aataggtaga gtaagaaaaa gggcaagtaa aattgcccct atcttgtaat
     5641 actttagggt tttaagcatt atctaaaacc gacttgatca taaattttaa cagcctcttt
     5701 aaccttttct gctatttgac tcacaggtat ttgatcttct ttaaaagttc caaaatcttt
     5761 taccgtttgg cttaattcta catcgtttct tataggaaat tcataattgc tatcagtgag
     5821 aattttttga atttctggag ttagcataaa ttccataaac ttcttagctg cttcttgatt
     5881 tttgcttgat tttgtcatag caataccgct gatatttata tgagttcctc tattgtcttg
     5941 atttggaaaa ataataccta aggaatttcc aacttctaca tcttttggat ttttagaatt
     6001 ttttaaaagc cctatataat aagtattcat aacagcaaat ttagcctcac ctgcaaaaac
     6061 ttgtctggct tgatccctat ctccaccctt tggtttggtt gcaagattgt caagcacacc
     6121 cttagcccat actttagcgt tttcatctcc atcattagct ataatagaag ctaaaagagt
     6181 tttgctataa ggagctgtag cacttctcat aacgatttgt cctttaaatt caggcttagc
     6241 caaatcttca tagtttttca ttttgctaat gtcagtgttt gcatttttat tgtaagcaat
     6301 aattcttgct ctttttgtaa tcgcaaacca ttccccatct ttatctctta aatgagcggg
     6361 tatagtatct tctaaatatt ttgatttaac agggcttaaa agtccagaat tttttgcttc
     6421 tgtaagattg gatatatcgg ctgttataaa aatatcagca ggcgaattgc ttccttcaag
     6481 cgaaagtctt ttgatgagtt ctgaagcttt agcttgagta tgattaactt taatgcctgt
     6541 tttttcctca aattttttta taatctgaaa atcagcatca taatgtcttg ccgagtaaat
     6601 gttaagttct gcagcaccta gtaaagaaaa acctaataaa cataaagaaa agattttttt
     6661 catttatttg tccttatatt gagaattata tttagtttta tcatgatctt taaaatcagc
     6721 attagagtgt tcagagcacg caaatgcaaa acctaagcaa aataaaaata aaactaattt
     6781 tttcattatt tctccccttt ttttgtgatt aa
//
LOCUS       DBBXRO010000093         6678 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.094, whole genome shotgun sequence.
ACCESSION   DBBXRO010000093 DBBXRO010000000
VERSION     DBBXRO010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6678
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.094"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            84..1223
                     /locus_tag="ACJFEZ_001387"
     CDS             84..1223
                     /locus_tag="ACJFEZ_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HGG0917498.1"
                     /translation="MIDYNQIESRLSALEKLPSLNPENSIPKALERSGFTRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVIWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIEKYKNKYILMVEGGIPMGDTENFLTIGPHGKS
                     GYELSKVASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVQNFGDEGAK
                     NGYCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADNVSDKIGIGVLTLTGVAIAAHAVIASMKKNEE"
     gene            1229..2944
                     /locus_tag="ACJFEZ_001388"
     CDS             1229..2944
                     /locus_tag="ACJFEZ_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HGG0917499.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLSPARMGEYMEKFKEVQDFVNRAYYPDLVMAGKAYADEPSVLNDI
                     GVNNLYTFQEFQLGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YEGKTNPNYTGLVEGESVDHHGNTVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCLEAKIVANNALKAFRNLVE
                     NLKVDESTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNASL"
     gene            2956..3648
                     /gene="cybH"
                     /locus_tag="ACJFEZ_001389"
     CDS             2956..3648
                     /gene="cybH"
                     /locus_tag="ACJFEZ_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HGG0917500.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAFAIVVLVITGYYLSYV
                     FQNPISNGEPVNFMQAKYRMVHQAVGFVLIACVIFKVYLFFFDRISRKERISIVDAFN
                     PKLWIEQIKFYLFLGKHPHLKGVYNPLQFVTYIFFYIVMVGIILTGLILYTHTYHEGL
                     GGLLYEVLRPLEAALGGLADVRTYHRILMWVILIFVPVHIYMAFFNAIKGKDGAIDAI
                     VSGYKFVKEEKN"
     gene            3645..4178
                     /locus_tag="ACJFEZ_001390"
     CDS             3645..4178
                     /locus_tag="ACJFEZ_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HGG0917501.1"
                     /translation="MKFLVLGIGNIMFADEGIGVHLCKLLEKNYKFTHSNHSLDFVDG
                     GTLALQLSYIIAEYDKMIVLDCIDADDSKIGDVFFFPYDAMPKKINWSGSAHEVEMLQ
                     TLQYMELMGDLPHTQILACVPKRIKPMSFTLSQEIVSAGEIMEKTLLEYLTKEGFSYE
                     KIANHSLQELADISYKN"
     gene            complement(4180..4755)
                     /gene="recR"
                     /locus_tag="ACJFEZ_001391"
     CDS             complement(4180..4755)
                     /gene="recR"
                     /locus_tag="ACJFEZ_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HGG0917502.1"
                     /translation="MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMK
                     LAHNIENAIRFIKPCQQCGSLSENELCEICTDDERDKNCLCIVQSPKDVLVIEESKSY
                     GGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
                     SKIAQGIPSGVNLENVDFISLNKAINFRTKV"
     gene            complement(4745..5995)
                     /locus_tag="ACJFEZ_001392"
     CDS             complement(4745..5995)
                     /locus_tag="ACJFEZ_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HGG0917503.1"
                     /translation="MTRNYSIYTKLVILFVVTFFLVCVLFIVLLKIESNTYSEEEGFK
                     QESFIKNIINSYGNASGVDIGAHLNNSGFVAIQNDYFVKIARLEGQSLFRAGNGENAC
                     TLTSLKYQNKLYLDVQCKDFSALFEEDTNNRVYNLLLIGFFFFSFLVVFMYFSVLKSL
                     EPLKKLRKQVAEVANGGKADFENYQEDEVGKIALEFQKAFKKNQELIQSRQLFLRTIM
                     HELKTPIGKGRIISEMLQEEKQKERLIDIFLRMDSLINEFAKIENLFSKNYNLQFKPV
                     HFSTILNEAKDYLMRDDFNRVVKLNLKHDALINVDMEIFPLILKNLIDNALKYSSNGT
                     CELYCCKECFVIKNPGNPLREPIEHYFEAFTREPYQKVKGMGLGLYIVFEVCKLHNFD
                     IIYFYEEGKHCFKIFFGVKTNNDA"
     gene            complement(5992..6663)
                     /locus_tag="ACJFEZ_001393"
     CDS             complement(5992..6663)
                     /locus_tag="ACJFEZ_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HGG0917504.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLTQFNIKITNFENPKEALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKYNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMHARIMSLIRRTKRAENTNNENINSAFKIDERKHEITYQNKVLTLTPAEYEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRTKINDSSKAPKHIFSVRGIG
                     YKLIG"
BASE COUNT         2133 a         1014 c         1274 g         2257 t
ORIGIN      
        1 attgaaattt aaattttaat acatttttaa tttgctttgt tttattatta agtggaataa
       61 attacattaa ttaaggaatt tcaatgattg attataatca aatagagtcc cgtttaagcg
      121 cacttgagaa acttccttct ttaaatcctg aaaattctat accaaaagct ttggaaagat
      181 ctggctttac tagaagagat tttatgaaat gggcaggggc gatgacagca tttttagcat
      241 tgccagcgag ttttacccct atggtggcaa aagctgcaga acttgcagat agacttcctg
      301 tgatttggct tcatatggct gaatgtacgg gctgtagcga gagtttatta agaagtgata
      361 ctccaactat tgatagctta atatttgatt atatttcttt agaataccat gaaaccgtta
      421 tggctgcagc gggttggcag gctgaagaaa atttagaaag tgccattgaa aaatataaaa
      481 acaagtatat tttaatggtt gaaggtggta tccctatggg agatacagag aattttttaa
      541 ccatagggcc acatggaaag agtggatatg agctttctaa agtagcgagt gaaaatgctt
      601 tggcgatttt tgcgatagga acctgttcga gctttggcgg aattcaagct gcaagaccaa
      661 atccaagcaa tgctcaacct ctaagcaagg taacaagcaa aaccgttatc aacgtgccag
      721 gttgtccgcc aagtgaaaaa aacatagtag gaaatgtttt acattatctt ctttttggtg
      781 agttacctgc gcttgatgtt tataatagac caaaatgggc ttatggttta agaattcatg
      841 atctttgtga aagacgcgga cattttgatg cgggtgaatt tgtacaaaac tttggcgatg
      901 agggtgcaaa aaatggttat tgtctttata aagtaggttg taaaggtcct tatactttta
      961 ataactgctc tagagaaaga tttaaccaac acacttcttg gcctatccaa gcaggacatg
     1021 gctgtatagg ttgttctgag ccaaattttt gggatactat gggacctttt gaagagccta
     1081 tggcaagtcg taaatttgat actgtttttg gattaggagc tgataatgta tcagataaaa
     1141 taggcatagg tgttctaacg cttacaggcg ttgctatcgc agcgcatgcg gtgatcgcat
     1201 ccatgaaaaa gaatgaggaa taaaatacat gagtcaaaag ataatagtag atccaattac
     1261 aagaatagaa ggacacttaa gggttgaagt tgttgttgat gataacaatg tggtaaaaga
     1321 agcttatgcg ggctctactt tgtggcgtgg tattgaaacc attgttaaag ggcgtgaccc
     1381 aagagatgcg ggttttatga cgcaaagaat ttgcggagtt tgtacttttt cacattataa
     1441 agcaggtata gttgctgttg aaaatgcttt aggtattact ccgcctttaa atgcgctttt
     1501 aacaagaact ttaatgaatg cagcgctttt cttacacgat catatcgtac atttttatca
     1561 actccatggg cttgattggg cagatgttgt aagtgcttta agtgctgatg ttaaaaaagc
     1621 aagtgatgag gcttttaaat acacttcaaa tccttatgca acaggtgcag ataaacttct
     1681 tgaagtgcaa caaagactta aaacttttgt agataaagga aatttaggac cttttgcaaa
     1741 tgcttattat ggtcatccta cttatcgctt aactccagag caaaatttga tcgttttatc
     1801 gcattattta gagtgtttaa gaattcaaag aatcatagct caatgtatgg ctatttttgg
     1861 tgctaaaaat ccacatccac aaagcttaac cgttggtggt gtaacttgcg ttatggattt
     1921 gctaagccct gctagaatgg gtgaatatat ggaaaaattc aaagaagtgc aagactttgt
     1981 taatcgtgcg tattatcctg atcttgttat ggcgggaaaa gcttatgcag atgaacctag
     2041 tgtgctaaat gatattgggg taaacaatct ttacactttc caagaattcc agcttggtag
     2101 agatgagtgg ctatttgaaa gcggaatcat caaaaatggc gatttaagca aggtatatga
     2161 agtagaagaa gataagatca ctgaagaagc gacccattct tggtatgcag ataatgagcc
     2221 tttgcatcct tatgagggta aaacaaatcc aaattataca gggcttgtag agggtgaaag
     2281 tgtagatcat catggaaata cagtgcattc taaggtattt gatactaagg gtaaatatag
     2341 ctggattaag gctccacgct atgaaggaaa tcctatgcaa gtaggacctt tggctaatat
     2401 cgttgtaaat tatgctaagg gtaatcaaaa tgttgttcct gtggtagatg agtttttaaa
     2461 agaaacagga cttcctttaa atgctgtatt tagcactctt ggaagaactg ctgcgcgttg
     2521 tttggaagca aaaattgtgg ctaataatgc tttaaaagcc ttccgtaatt tagtagaaaa
     2581 tttaaaagta gatgagagca cttgtgcgcc ttatgtgatc gataattcta aagagtacaa
     2641 aggacgctat atggggcatg tgccacgcgg aacgctaagt cattggtgca ggattaaaaa
     2701 tggagtgata gaaaattggc aagcagttgt tccttctact tggaatgcaa gtccaaaaga
     2761 tgctaatggt gtgggcggaa gctatgagca atgtttgata ggattaaaaa ttgctgatgt
     2821 aaaacaacca cttgaaatca ttagaaaaat tcactcttat gatccttgta ttgcttgtgc
     2881 ggtgcatgta atggatacta agggaaataa tctaagcgaa tataaagtaa acgcgagttt
     2941 ataaaagggg cttttatgca aaataaagaa gaaaaattgc aaagaaaggc tgaatatgaa
     3001 tttagcatag gtttgcgttt aacacattgg gtaagagctt ttgctatagt ggttttggtt
     3061 ataacgggat attatctttc ttatgttttt caaaatccta taagcaatgg tgagccagtt
     3121 aatttcatgc aagcaaaata cagaatggtg catcaagccg tcggttttgt tttgattgct
     3181 tgtgtgattt ttaaagttta tcttttcttt tttgatagga taagtcgtaa ggagcgtatc
     3241 agcatagtag atgcatttaa tccaaaatta tggatagagc agattaaatt ttatctattt
     3301 ttaggtaagc atccacatct aaaaggtgtt tataatcctt tgcagtttgt aacctatata
     3361 tttttctata ttgttatggt ggggattatt ttaacaggat tgattcttta tactcatact
     3421 taccatgagg gtttgggagg attgttgtat gaagtgttaa gacctttaga agccgcactt
     3481 ggaggcttgg ctgatgttag aacttatcat agaattttaa tgtgggttat tttaatcttc
     3541 gtacccgttc atatctacat ggcatttttc aatgcgatca aaggtaaaga tggtgcgatt
     3601 gatgctatag ttagcggtta taaatttgtt aaagaagaga aaaattgaaa tttcttgtcc
     3661 ttggtatagg aaatattatg tttgcagatg aaggcatagg cgttcatctt tgcaaacttt
     3721 tagaaaaaaa ttataaattc actcattcaa atcacagctt agattttgtc gatggaggca
     3781 ccttggcctt gcaacttagc tatattatcg cagagtatga taagatgata gtgcttgatt
     3841 gtatagatgc agatgattca aaaatcggcg atgtattttt ctttccttat gatgcaatgc
     3901 ctaaaaagat caattggagt ggtagtgcgc acgaagtaga aatgcttcaa accttacaat
     3961 atatggagct aatgggagat ttgcctcata cacaaatttt agcttgtgtt ccaaagcgta
     4021 tcaagcctat gagttttact ctatcgcaag agattgttag cgcgggtgaa attatggaaa
     4081 aaactttgct tgagtattta actaaagagg gttttagtta tgaaaaaata gcaaatcatt
     4141 ctttgcagga attagctgac atttcttaca aaaactgatt taaactttgg tgcgaaaatt
     4201 gatggctttg tttagagata taaagtcaac attttctaaa tttactccac ttggaatacc
     4261 ttgtgcgatt ttgctaaatt gtaaatttaa atctttaagc ctatcttcta tataaaaaat
     4321 cattgcatcg gaatttaaat tatgagtgaa agcaaaaatg agttctttgc tttgtaattt
     4381 tagtatcatt tgtcttaatt gagcaagctt ttcatcgttt aattcatcta aaacaaaata
     4441 caagccccca taacttttac tctcttctat aaccaaaaca tctttagggc tttgcactat
     4501 acataagcaa tttttatccc tttcatcatc ggtgcaaatt tcacaaagtt cgttttcgct
     4561 taaagacccg cattgttgac agggttttat aaagcgtata gcattttcta tattgtgtgc
     4621 gagcttcata ccttcgagtt gatttcctgt gcaaatatga taagcaaggc gaatagcagt
     4681 ttttttaccg atagtgggta attttgcaaa actttctaca agttcgttaa atttttctat
     4741 acccttatgc gtcattgttt gtttttactc cgaaaaaaat tttaaaacaa tgcttacctt
     4801 cttcgtaaaa ataaataata tcaaaattat gtagtttgca tacttcaaaa acgatataaa
     4861 gtcctaagcc catacctttg actttctgat atggttcgcg tgtaaaagcc tcaaaataat
     4921 gctctatagg ttctcttaat ggattgccag gattttttat cacaaaacat tctttacagc
     4981 aataaagctc acaagttcca ttgctagaat attttaaagc attatcaatg agatttttta
     5041 aaatcaaagg aaaaatttcc atatctacat taatcaaggc atcgtgtttt aaattgagct
     5101 tgacgactct attaaaatca tcacgcatca aataatcttt agcttcattg agtatggtgc
     5161 taaaatgcac aggtttaaac tgaagattgt agttttttga aaaaagattt tcaattttgg
     5221 caaattcatt aatcaacgaa tccattctta aaaaaatatc gatcaatctt tctttctgct
     5281 tttcttcttg cagcatttca gatataatcc taccttttcc aataggcgtt ttaagctcat
     5341 gcatgatggt gcgtagaaaa agttgtcttg attgtatgag ttcttgattt ttcttaaaag
     5401 ctttttgaaa ttcaagggct attttaccta cttcatcttc ttgataattc tcaaaatcag
     5461 cttttccgcc attagccact tctgcgacct gttttcttaa ttttttaagt ggttcaaggg
     5521 attttaatac tgaaaaatac ataaaaacaa ccaaaaaaga aaaaaagaaa aagcctatca
     5581 acaaaagatt ataaactcta ttgttagtat cttcttcaaa taaagcgcta aagtctttgc
     5641 attggacatc aagatagagt ttgttttgat attttaaaga ggtgagagtg caggcatttt
     5701 ctccatttcc tgcgcgaaaa aggctttgtc cttctagtct tgcgattttt acaaaataat
     5761 cattttgtat agcaacaaag ccactattgt taagatgagc tcctatatcc actccagaag
     5821 cattgccata agaattgatg atatttttta taaaactttc ttgtttaaaa ccttcttctt
     5881 cgctgtaggt attgctttct atttttaaaa gcacgataaa taaaacgcaa accaaaaaga
     5941 aagttacaac aaataaaata acaagtttgg tataaataga ataatttcta gtcatcctat
     6001 aagtttatat cctatacctc taactgaaaa tatatgtttt ggagctttag agctatcatt
     6061 tatcttagtt cttaagcgac cgatgataac atcaaggctt ttagaatctt tatctttaag
     6121 atttttacag cgacttacaa gctgttctct agatacacta tagccgtgtt gctggatgag
     6181 atattctaaa atttcatatt ccgcaggggt tagagttaag actttgtttt gataagtgat
     6241 ttcgtgtttt ctttcatcga ttttaaaagc tgaattgata ttttcattgt tggtattttc
     6301 agctcttttt gtgcgacgaa taagactcat gattcttgcg tgcatttctt ttggatcgta
     6361 aggttttggt aaataatcat ccgcgccaat ttggagccct acaaccttat cgcttaaatc
     6421 tcctctagca gatgaaatga tgataggaat attgtatttt tgtctgattt ctctacaaac
     6481 ttcaaggcca tcaattccag gtaaggttaa atctaaaatt aaacaatcat agccttgtat
     6541 acctacattt aaagcttctt taggattttc aaaatttgtg attttgatat taaactgagt
     6601 taaatattct gacaataatt gggcaaaatc aggatcatct tctatcatca acacattaat
     6661 cattttgtta tcctttat
//
LOCUS       DBBXRO010000094         6466 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.095, whole genome shotgun sequence.
ACCESSION   DBBXRO010000094 DBBXRO010000000
VERSION     DBBXRO010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6466
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.095"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(21..806)
                     /locus_tag="ACJFEZ_001394"
     CDS             complement(21..806)
                     /locus_tag="ACJFEZ_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HGG0917505.1"
                     /translation="MNFADLPYIFIGIFSGITSGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAIFGSYINYKKKNLNLKDGIVIGLGGLLGASFSGILLQALSDVALTA
                     IFLGVSCVFFIKYAFGIKESVVKSHKSVWVKNGILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASISGIISFANSGVIDAEVIHKGVLVGFASMIGV
                     FIGIKIIEKMHISAHRKILLCVYALSILATTLSLLRKLGILAF"
     gene            1191..2432
                     /locus_tag="ACJFEZ_001395"
     CDS             1191..2432
                     /locus_tag="ACJFEZ_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HGG0917506.1"
                     /translation="MLEMKANLYYRQILKEFPSSYFAEDSTRVIIGIDCDFYDAKDIT
                     LSELKAKFYENASREQICKYSGFFGVFSANFISLFENLPSNENKNYDFPNFLFANAKA
                     YLVYEKTSKMFFKYGENKYFDFLKEDFVFDKKVCEYKILQDFQEEKRDFIQSVEKAKE
                     YLLSGDIFQVVLSKQLCIEHNFDSFEFYETLSELNPSAYMFYFPTQYGVVLGSSPEFL
                     LKIKNKEIFLAPIAGTRNLDENSDILKLEKDLLSDEKELSEHKMLVDLARNDASKFGT
                     NTRVENLFSITRNKFVMHIVSEVYATMDKQANIFDIIGAVFPAGTLSGAPKIRALEII
                     NELENLDRGVYGGAVGFLNFNEDVVLAIIIRSAFFKENKAFIASGAGIVLQSDPQKEY
                     EEICAKRKALLVSFEKMAKRS"
     gene            2434..4026
                     /gene="trpD"
                     /locus_tag="ACJFEZ_001396"
     CDS             2434..4026
                     /gene="trpD"
                     /locus_tag="ACJFEZ_001396"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HGG0917507.1"
                     /translation="MILLIDNYDSFVFNIKSMLENVYKGEILVVRNDKITLDEIKALN
                     PNYIILSPGPKHPKDSGVCLEIFKSRLNIPTLGICLGHQALGFSFKAEIAKLQNPMHA
                     KNSLIKIYNKDTIFKDFEDEVSVMRYHSLEVKNLPDDFEILALSDDNVIMAIKHKTLP
                     YFGVQFHPESYFSEYGIKIFANFLNQEKAVQDKKHTLGFYLQKMSENHYLESEDFSEI
                     CKIIMSRDYEPLQAAALLVLISEKSLNQKSLSSLVREILRYSKTFSDESDMIDICGTG
                     GDNFKSINVSTASAFILAALGAKVAKHGNRAISSSSGSTDVLDALDVKIPDNLECALN
                     DLQNKNLAFFHAPYFHPLVGELRELRAKLGIRTVFNVLGPLLHPNLKLKYQMMGNYHA
                     PVHKLLAEVLRSLGRKRALVVRGNDGMDEISICDETKIFEVREGEIYEYGVTPEQFGF
                     KRAFHSEIMGGNAYENAKDLKDILSGKIQGAKFDIVVLNSMFALYTANKVSTPLKAKD
                     IILEAIYSGKVMEYFRSLNDKA"
     gene            4013..4612
                     /locus_tag="ACJFEZ_001397"
     CDS             4013..4612
                     /locus_tag="ACJFEZ_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HGG0917508.1"
                     /translation="MTKLKICGIKDENNAKEIAELNVDFMGLIFAKSPRQLSLEQAMN
                     LSDIIHAGFKKSVGVFVDENLEFILKAIKQAKLDGVQIHRKISEFEFKTLKESGVFVW
                     QVLSVGDRLELEENIYADLILFDTKGKFHGGNGESFNWDLLKDFKKDFALAGGIGTHN
                     INEALSLKPKIIDLNSKIEKENHLKDVEKIKYILKEMRK"
     gene            4609..5787
                     /gene="trpB"
                     /locus_tag="ACJFEZ_001398"
     CDS             4609..5787
                     /gene="trpB"
                     /locus_tag="ACJFEZ_001398"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HGG0917509.1"
                     /translation="MKKAYYGEFGGQFLPESAMFALNELEDAFLKFAQDKAFKKELQG
                     LLTTYVGRPTPLYFARNLSKKYGHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKVNAIQSGL
                     KTLKEATTAAIQAWVGDIKNLFYVVGSAVGPYPYPKMVTHFQSVIGKECKSQLKKLGK
                     KVDYIIAAVGGGSNAGGIFYEFIKDESVNLIGIEAGGLGVDTLYHAATLTKGKTGIIH
                     GMKTKVLQDELGNILPVHSVSAGLDYPGIGPLHAFLSQSGRAKYYAITDEECMMALKM
                     LCKEEGIIPAIESSHALAFLEKLCPKLNKKSVIVVNLSGRGDKDMQTIREYKKGTIYG
                     "
     gene            5780..>6466
                     /gene="trpA"
                     /locus_tag="ACJFEZ_001399"
     CDS             5780..>6466
                     /gene="trpA"
                     /locus_tag="ACJFEZ_001399"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HGG0917510.1"
                     /translation="MVDFTKFYKDKANVAYMVLGYPNLKISEEFLKRLDESSIDVLEL
                     GIAYSDPIADGEIIANAAKIALEQGADIHKIFELLAKIKTKKALVFMVYYNLIFSYGL
                     ENFVKKAKALGISALIVPELSYEESKPLYKECQKYDIALITLVSITTPKERVKELVKN
                     AKGFIYLLASVGITGGQSADNKLLQEKIQEIRSFTQLPIYVGFGVKNNTDVRNMRKLA
                     DGVIVGTNIVK"
BASE COUNT         2296 a          840 c         1216 g         2114 t
ORIGIN      
        1 ttttttagca ttttaatgga ttaaaatgct aaaattccaa gttttctaag cagagaaaga
       61 gtggttgcaa gtatggataa agcatatacg caaagtaaaa tttttctatg agctgaaata
      121 tgcatttttt ctatgatttt tatacctata aaaacaccta tcatagaagc aaaacctact
      181 aaaacacctt tgtggataac ttcagcgtca attacacctg aatttgcaaa agagatgata
      241 ccagagattg aagcaaaaat aacaaaaaat aaagaaagcg aaaccacttt tttgctatca
      301 tagcctaaga aataagctaa aattggagcg attaaaagcc ctccgcctat acctaaagaa
      361 atagcaaaaa ttcccgtaaa agctcccgct ataaataaaa ttccattttt aacccatacg
      421 cttttatggc tttttacaac actttctttg atgccaaagg catatttgat aaaaaataca
      481 caacttactc ctaaaaatat agcagtaaga gctacatcgc ttaaggcttg taataaaatt
      541 ccactaaaac ttgcccccaa aagaccgccc agtcctataa caataccatc tttgagattt
      601 aaattctttt ttttataatt aatataagaa ccaaaaatgg ccgcaaagat catctgtaat
      661 acagaaattc caatagcatg atgagcactt gctcctaaag caaacattga gggcacgata
      721 atcattcccc cacctatgcc aaaaagtcct gaagtaatac ctgaaaatat acctataaag
      781 atataaggca aatctgcaaa attcatactt tttcctaaat ttatatcgtt tgttgattaa
      841 ataaggagta attttatctt atcaagctta tcttagtttt aaaatttttt ataatgtttt
      901 acaaggctta ttttgacaaa atattttcca cagagttaca tggatttatt tttttgaaaa
      961 tgaaataaat attaaaggat aattttatgt ttttttctct aaaattaata aaagtcatca
     1021 tagtttaaaa tgaggcttaa ttttttgaaa ggtagaagat gaataaaaac gattttttaa
     1081 ataattcttt aattttagta tcaacacaca ctcttcgttt ttggcgcttc taagcttctt
     1141 tttttaactt ctcaatattt ttttatttta ttttttataa aggttgtatt atgcttgaaa
     1201 tgaaagcaaa tttatattat aggcaaattt taaaagaatt tccttcttct tactttgctg
     1261 aagattctac tagggttatt ataggtattg attgcgattt ttatgatgct aaggatatca
     1321 ctcttagcga attaaaggcg aaattttatg aaaatgcttc aagggagcaa atttgcaaat
     1381 attctggatt ttttggtgtt tttagtgcaa attttatttc tttgtttgag aatttaccct
     1441 caaatgaaaa taaaaattat gattttccaa attttttatt tgccaatgct aaagcttatt
     1501 tggtttatga aaaaactagc aaaatgtttt ttaaatacgg agaaaataag tattttgatt
     1561 ttttaaaaga agattttgtt ttcgataaaa aagtttgcga atataaaatc ttgcaggatt
     1621 ttcaagaaga aaaaagagat tttatccaaa gtgtggaaaa agccaaggaa tatcttttaa
     1681 gcggagatat ttttcaagtg gttttaagca agcagctttg catagagcat aattttgata
     1741 gttttgaatt ttatgaaact ttaagtgagt taaatcctag tgcttatatg ttttattttc
     1801 cgactcaata tggggttgtg ttgggttctt ctccagagtt tttactgaaa ataaaaaaca
     1861 aagaaatttt tttagctcct atagcaggta ctcgaaattt ggatgaaaat tcagatattt
     1921 taaaattaga aaaagatctt ttaagcgatg aaaaagaatt gagtgagcat aaaatgcttg
     1981 ttgatttagc tagaaatgat gcatctaaat tcggtacaaa tacgcgagtt gaaaatcttt
     2041 ttagtataac aagaaataaa tttgtcatgc atatagtcag tgaagtttat gcgacgatgg
     2101 ataagcaagc caatattttt gatattatag gagcggtttt tccagcagga actttaagtg
     2161 gtgccccaaa gattagagct ttagaaatta tcaatgagct tgaaaattta gacagaggag
     2221 tttatggagg cgctgttggg tttttaaatt ttaatgaaga tgtggtttta gctattatca
     2281 taagatcggc tttttttaaa gaaaataaag cttttatagc aagtggagcg ggtatagttt
     2341 tacaaagtga tccacaaaaa gaatatgaag aaatttgcgc taagcgtaaa gctttattag
     2401 taagttttga aaaaatggct aaaaggagtt aagatgatac ttttaattga taattatgat
     2461 tcttttgttt tcaatatcaa atccatgctc gaaaatgtat acaagggtga aattttagtt
     2521 gttcgaaacg ataaaatcac tcttgatgaa atcaaagctt taaatccaaa ctatatcatt
     2581 ttaagtcctg gtccaaaaca cccaaaagat agtggagtgt gtcttgaaat ttttaaatca
     2641 cgactcaaca tccctacgct tggaatttgc ttaggacatc aagctttggg ttttagtttt
     2701 aaggccgaaa ttgctaaatt gcaaaaccct atgcatgcaa aaaattcctt aattaaaatt
     2761 tataataaag atacaatttt taaagatttt gaagatgagg taagtgtgat gcgttatcac
     2821 tctttagaag ttaaaaattt gcccgatgat tttgaaattt tggctttgag tgatgataat
     2881 gttatcatgg ctataaaaca taaaacttta ccttattttg gcgtgcagtt tcatcctgaa
     2941 agttatttta gcgaatacgg aatcaaaatt tttgctaatt ttttaaatca agaaaaagca
     3001 gttcaggata aaaaacatac tcttggattt tatttgcaaa aaatgagtga aaatcattat
     3061 ttagaaagtg aagatttttc agaaatttgc aagattatta tgagcaggga ttatgagcct
     3121 ttacaagcgg ctgctttact tgttttaatc agtgaaaaat ccctcaatca aaaatcatta
     3181 agcagtcttg tgcgtgaaat tttgcgttat tctaaaacct ttagtgatga aagcgatatg
     3241 atagatatat gtggtactgg aggagataat tttaaaagta tcaatgtttc aacagcaagt
     3301 gcttttattt tagcagcttt gggggcaaaa gtagcaaaac atggaaacag agcgatttct
     3361 agttcaagtg gaagcaccga tgttttagat gctttagatg taaaaattcc tgataattta
     3421 gaatgtgctt taaatgattt gcaaaataaa aatttagcct tttttcatgc cccgtatttt
     3481 catcctttag taggtgagct aagagagctt agggcaaagc ttggcataag aactgtattt
     3541 aatgttttag gacctttact tcatcctaat ttaaagctta aatatcaaat gatgggaaat
     3601 tatcatgcac ctgtgcataa gcttttggct gaagttttaa gatcactagg acgaaaaaga
     3661 gctttggtgg tgcgtggcaa tgatggcatg gatgagatca gtatttgcga tgaaacaaag
     3721 atttttgaag taagagaggg tgaaatttat gaatacggcg ttacacccga acaatttggt
     3781 tttaagcgag cttttcatag tgagattatg ggtggcaatg cttatgaaaa tgctaaggat
     3841 ttaaaagata tcttaagtgg aaaaatacaa ggggctaaat ttgatatcgt ggttttaaat
     3901 tctatgttcg cactttatac agccaacaaa gtttcaacac ctttaaaagc aaaagatatt
     3961 attttagagg ctatatattc tggcaaggtg atggagtatt ttaggagtct aaatgacaaa
     4021 gcttaaaatt tgtggcatta aggatgaaaa taatgccaag gaaatcgctg aattaaatgt
     4081 cgatttcatg gggcttattt ttgcaaaaag ccctagacag cttagtttag aacaagcaat
     4141 gaatttaagc gatatcatcc atgcgggatt taaaaagagt gtaggagttt ttgtcgatga
     4201 aaatttggaa tttattttaa aagcaatcaa acaagcaaag cttgatggag tgcaaattca
     4261 tagaaaaatc agtgaatttg agtttaaaac cttaaaagaa agtggagttt ttgtttggca
     4321 ggttttaagt gtaggggatc gtttggaatt ggaagaaaat atttatgcgg atttaatttt
     4381 atttgatact aagggaaaat ttcatggagg caatggggaa agttttaact gggatctttt
     4441 gaaagacttt aaaaaagatt ttgccttagc aggaggcata ggaactcata atatcaatga
     4501 agctttaagt ttaaaaccaa aaatcataga cttaaattca aagatagaaa aggaaaatca
     4561 tttaaaagat gtggaaaaaa tcaagtatat tttaaaggag atgagaaaat gaaaaaggcg
     4621 tattatggtg aatttggtgg gcagtttttg cctgagagtg cgatgtttgc tttaaatgag
     4681 cttgaagatg cttttttaaa atttgcacaa gataaagcct ttaaaaaaga gcttcaaggc
     4741 cttttaacta cttatgtagg acgccccact ccgctttatt ttgctcgaaa tttaagtaaa
     4801 aaatacggac atgaaattta tcttaagcgt gaagatttaa accatacagg agcacataaa
     4861 atcaacaatg ctatagctca agcactttta gcaaaaaaaa tgggtaagaa aaaaatcatt
     4921 gccgaaacag gggcagggca gcatggatta gcaactgcta ctgctgcagc acttttagga
     4981 cttgagtgtg aaatttacat gggagcgact gatgtgcaac gacaagcttt aaatgtttat
     5041 aaaatggagc ttttaggagc taaggttaat gctatacaaa gtggacttaa aaccttaaaa
     5101 gaagctacaa ctgctgctat ccaagcttgg gtgggggata ttaaaaatct tttttatgta
     5161 gttggaagtg ctgtagggcc ttatccttat cctaaaatgg ttacacattt tcaaagtgtt
     5221 ataggaaaag aatgcaaaag tcaacttaaa aaattaggta aaaaagtaga ttatatcatc
     5281 gctgcagtag gaggtggaag taatgcgggt ggaatttttt acgaatttat caaagatgag
     5341 agtgtaaatc ttattggaat tgaagcaggg ggattgggtg ttgacaccct ttatcatgca
     5401 gcaactttaa ccaagggaaa aacaggtatt atccatggta tgaaaacgaa ggttttgcaa
     5461 gatgaattag gaaacatctt acctgtgcat agtgtttctg caggacttga ttatccagga
     5521 attggtcctt tgcatgcttt tttatctcaa agcggtaggg caaaatatta tgccattacc
     5581 gatgaagaat gcatgatggc tttaaaaatg ctttgtaagg aagaggggat tatccctgct
     5641 attgagagtt ctcatgcttt ggcatttttg gaaaaacttt gtcctaagtt aaacaaaaag
     5701 agcgtgatag tggttaattt atcaggtaga ggcgataaag atatgcaaac gattagagaa
     5761 tataaaaaag gaacaattta tggttgattt tacaaaattt tacaaggata aggcaaatgt
     5821 agcttatatg gttttaggct atccaaattt aaaaattagt gaagagtttt taaagcgttt
     5881 ggatgaaagt tcgatcgatg ttttggaatt aggaatcgca tatagtgatc ctattgctga
     5941 tggtgagatc atcgccaatg ctgcaaaaat tgccctagaa caaggcgcag acattcataa
     6001 aatatttgag cttttagcca aaataaaaac aaaaaaagcc cttgttttta tggtgtatta
     6061 taatttaatt ttttcctacg gcttagaaaa ttttgttaaa aaagccaagg ctttgggaat
     6121 ttctgctttg atagttcctg agctaagtta tgaagaaagt aagcctttgt ataaagaatg
     6181 tcaaaagtat gacatagctt tgattactct tgtaagcatt acaactccta aagagcgtgt
     6241 taaagaactt gtaaaaaatg ctaagggttt tatttattta cttgctagtg taggcataac
     6301 aggaggacaa agtgcggata ataaactttt gcaagaaaaa atacaagaaa tccgatcttt
     6361 cacacagctg cctatttatg ttggttttgg ggtaaaaaat aacacagatg taagaaatat
     6421 gcgtaaacta gccgatggag tgatagtagg aacgaatata gtaaag
//
LOCUS       DBBXRO010000095         6427 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.096, whole genome shotgun sequence.
ACCESSION   DBBXRO010000095 DBBXRO010000000
VERSION     DBBXRO010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6427
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.096"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..487
                     /locus_tag="ACJFEZ_001400"
     CDS             <1..487
                     /locus_tag="ACJFEZ_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917511.1"
                     /translation="EDIFTELGKNNFKKTLEKFIDKKYKIKINEIYILSLSGVEKFDL
                     EEFKRFLASTEAKEKNVGSEVKKALDNLEFPQTPTVPNISNIETPQIDQLFQDDNTQN
                     QYDNGEIDINTLNIPKMTSDIEEKIKRDLIANPPQIFRENNSSEEKGFELNLDTNLTM
                     P"
     gene            complement(490..999)
                     /gene="lolA"
                     /locus_tag="ACJFEZ_001401"
     CDS             complement(490..999)
                     /gene="lolA"
                     /locus_tag="ACJFEZ_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LolA-like outer membrane lipoprotein chaperone"
                     /protein_id="HGG0917512.1"
                     /translation="MKKIFCLFFFFLSHILATDLNFNTYSSNFTQSVKSKNSALSYSG
                     HFTLSQEQAYWSYDTPSKKEIYINKNQIVLVEHDLEQVVFSHLDNIPNLNEIFKKAKH
                     LNDNQLIAKYENINYTITLKDNEIQSIAYKDEFENDILITLNHQIKNPTINPEVFKPK
                     FPNYYDMVR"
     gene            1108..3696
                     /gene="secA"
                     /locus_tag="ACJFEZ_001402"
     CDS             1108..3696
                     /gene="secA"
                     /locus_tag="ACJFEZ_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HGG0917513.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYLKRVAQINALESKYQKLNDDELK
                     AEFGKFKEQILSGEKKESDILNDVFAIVREVGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVILS
                     SQNSDLEHKKAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHHFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQRGEAVLPPAKPEGDFIVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENAKIQEESQTLADITFQNYFRMYEKLAGMTGTAQTEA
                     TEFSQIYSLDVVSIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKNIMERLGIQEGEHIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDEEYDIKTKISQNIAEYSAYVMNDFMIEESGVDLNFENLKAKILDECSIE
                     LKQSDFENLSLIEMQEKLSEILEKSYDEKMSKLDSKQLHHIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVKFNQEEVQ
                     NLEEKANQENEALFEKSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3693..4898
                     /locus_tag="ACJFEZ_001403"
     CDS             3693..4898
                     /locus_tag="ACJFEZ_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0917514.1"
                     /translation="MKKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITIVPKFYSPMDDDLVTELKREFPHLLFSPYISTQVV
                     AKADNRFEGGVLFGVNFNDEVKINEVVAKALKDENLSGFDILVGSVLADELNLHKNDK
                     LSLIFSNLSPSGFSLVPQAKRFDVKARFASGLIFYDKAYMYTDVNALRKVLGISNQQS
                     YDGVHVYSENAFKDVEKLKSYLKSDYAVVGWWEQNQNFFSALKLEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRTEIALLLALGASKLEVKKSFFALGMLIGGGGMIIGIILAF
                     FALWLLGNFDIVTLPADVYGTSKLPLDLSVMDFSLTLVGALIIIALSSYYPAKKATQI
                     NVLDTLRNE"
     gene            4908..6026
                     /locus_tag="ACJFEZ_001404"
     CDS             4908..6026
                     /locus_tag="ACJFEZ_001404"
                     /inference="COORDINATES: protein motif:HMM:NF017893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane CreD family protein"
                     /protein_id="HGG0917515.1"
                     /translation="MEQKFDENKFMQEYARNQRLKSLTLKGVLIFIISIVLLIPLLML
                     KTLVEDRKYNAQNVISLMGKAWGSDEFYTPSLNEKILPNKLELWVDLKYQERIKGIYK
                     IPLYTAFVDFNASFNMENLSNFDENSIQFSNGNLKDLQFNILKDVLWVSGTLQLKGYG
                     SFDVNMQAKENIIHINSNATNPSFEYALPNDYSIDKKGFSAFYEFQNSISNDRVEKRR
                     LSVEFYQGVDEYRLIDRMIKYGYLFIILTFLVLFLCELASKKNVILLQYAILGASLIV
                     FYLMLLSFSERIGFNFAYLFSSLAIIIPLSLYTLSIMGQKRFAIVMATILFILYLCLF
                     IMLKQDEYALLIGTFIAMFGIYAAMYFTRNLNKDYHQG"
     gene            complement(6035..6412)
                     /locus_tag="ACJFEZ_001405"
     CDS             complement(6035..6412)
                     /locus_tag="ACJFEZ_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917516.1"
                     /translation="MLILGHYLLTQNSNFCFIDESKKLKKDQISCFLYNEEIIQNAKN
                     ENLDFAVLIQDKNEIFLSNALGAKFLLFDDENLARFASEVAEFYLFDSKILLLVENLH
                     KLEKAYELRLDGVILKSLIQDYH"
BASE COUNT         2285 a          817 c         1183 g         2142 t
ORIGIN      
        1 tgaagatatt tttacagagc ttggaaaaaa taattttaaa aaaactttag aaaaatttat
       61 agataaaaaa tacaaaatta aaatcaacga gatttatatc ttatctctaa gcggagtaga
      121 aaaatttgat ttagaagaat ttaagcgttt cttggcaagt actgaagcta aggaaaaaaa
      181 tgtaggtagc gaagttaaaa aagctcttga taatttagaa tttcctcaaa ctcccacggt
      241 tccaaatatt tccaatatag aaactccaca aatagatcaa ctttttcaag atgataatac
      301 acaaaatcaa tatgacaatg gagaaatcga tatcaatact cttaatatcc ctaaaatgac
      361 ttcagatata gaagagaaga taaagcgaga tttgattgca aatccaccgc aaatttttag
      421 agaaaataat agctctgaag aaaaaggctt tgagttgaat ttggatacaa atttaacaat
      481 gccttaatct tagcgaacca tatcgtaata attaggaaat ttgggtttaa aaacttcagg
      541 attgatagta ggatttttga tttgatggtt tagagtgatt aaaatatcgt tttcaaattc
      601 atccttataa gcaatacttt gaatttcatt atctttgagc gtgatagtat aatttatatt
      661 ttcatatttt gcgatcaatt gattatcgtt taaatgtttt gcttttttaa aaatctcatt
      721 gagattaggg atgttatcaa gatgtgaaaa gacaacttgt tctaaatcat gctctactaa
      781 aacaatttga tttttattga tatatatttc ttttttgctt ggagtgtcgt agctccaata
      841 agcttgttct tgacttaaag taaaatgtcc tgagtaggaa agcgccgaat tttttgattt
      901 tactgactgt gtgaaattgc tagaataggt attaaaatta agatcagtag ctaaaatatg
      961 acttaaaaaa aagaaaaata aacaaaatat ttttttcata caattgcctt ataaatttat
     1021 tttggaattt ttgtagcatt ctagctaatt ttaattaaat aatcgttata atcatagctt
     1081 gaaaaaaata tcaaaagagg tttaaaaatg tttttaaata ccttaaaagc cgtatttggg
     1141 acaaaaaatg atcgtgaggt aaaaaaatat cttaaacgag tagcacaaat aaatgctctt
     1201 gagagcaaat atcaaaaatt aaatgatgat gaattaaagg ctgaatttgg aaaatttaaa
     1261 gagcaaattc taagcggaga aaaaaaagaa agcgatatct taaacgatgt ttttgccata
     1321 gttagagaag tgggaaaaag aactttaaat atgcgccatt ttgatgtgca attaatcggc
     1381 ggtatggttt tgcacgatgg aaaaatcgca gaaatgaaaa caggggaggg taaaactctt
     1441 gtggcaactc tacctgttgt gctaaatgct atgagtggaa aaggcgtgca tgtggttaca
     1501 gtcaatgatt atttggctaa aagagatgca gaacaaatga gtgcgattta taatttttta
     1561 ggctttagcg taggcgtgat tctttcatct caaaatagtg atttagaaca taaaaaagcc
     1621 tatgattgtg atattactta tgggacaaat aatgaatttg gttttgatta tttgcgtgat
     1681 aatatgaaat tctcaaaggc tgaaaaggta caaagagaac accattttgt tatcgtggat
     1741 gaagtagata gcattttaat tgacgaagca agaaccccgc ttatcatcag cggtcctaca
     1801 aatcgtactt tagacggtta tatcaaggca aatgaagtgg ctaagcaaat gcaaagaggg
     1861 gaagcagttt tacctcctgc taagcctgag ggtgatttta tagtggatga aaaaaatcgt
     1921 aatatcttaa tcacagaagc aggaattgcc aaggctgaaa aattatttgg tgtggaaaat
     1981 ttatacagtc ttgataatgc tatcttggct catcagcttg atcaagcttt aaaggcacac
     2041 aatctttttg aaaaagatgt gcattatgtt ctaagaaata acgaagtaat catcgttgat
     2101 gaatttacgg gtcgtttaag cgagggtcgc cgatttagcg aaggacttca tcaagcttta
     2161 gaggctaagg aaaatgcaaa aattcaagaa gaaagtcaga ctttagctga tattacattt
     2221 caaaactatt ttagaatgta tgaaaaatta gccggtatga caggaacggc acaaacagaa
     2281 gcaactgaat tttcccaaat ttacagctta gatgttgttt ctatacctac aaatatccct
     2341 atcaaaagac aggataagga tgatttgatt tataaaactc aaaatgaaaa atttaaagct
     2401 gtaatcgaag aaatcaaaaa agcaaacgct aaaggacaac ctgtacttgt aggaactgcg
     2461 agcattgaaa gaagtgaagt ttttcacaat atgcttgtaa aagaaaaaat tcctcatcat
     2521 gttttaaatg ctaaaaatca tgaacaagag gctttaatta ttcaagatgc gggaaaaaaa
     2581 ggtgcagtga ctatcgctac aaatatggca ggtcgtggcg tggatataaa aatcgatgat
     2641 gagataagag ctttgggtgg actttatatc atcggtacag aaagacatga aagccgtagg
     2701 attgataatc aacttcgtgg tcgtgcagga aggcagggtg atccaggtat tagccgtttt
     2761 tatttgagtt tggaagataa tcttttaaga atttttggtg gtgatcgtat caaaaatatt
     2821 atggagcgct tgggaataca agagggcgag catatagaat caaggattgt aacaagagca
     2881 gttgaaaatg cgcaaaaaaa ggttgaaagc ttacattttg aaagtagaaa acatttgctt
     2941 gagtatgatg atgtggccaa tgaacaaaga aagaccatct atcgttaccg caatgaactt
     3001 ttagatgaag aatacgatat taaaactaaa atttcacaaa atattgcaga atatagtgct
     3061 tatgtcatga atgattttat gattgaagaa agtggagtgg atttaaattt tgaaaattta
     3121 aaagctaaaa ttttggatga atgttccatt gaacttaaac aaagtgattt tgaaaatctt
     3181 agtttgattg aaatgcaaga aaaactaagc gaaatactag aaaaatcata cgatgaaaaa
     3241 atgtcaaaat tggattctaa acagcttcat cacatagagc gcattttata tttgcaagtt
     3301 ttagacaatg cttggcgtga gcatttatat caaatggata ttttaaaaac aggtatagga
     3361 cttcgcggat ataatcaaaa agatccttta gtagaataca aaaaagaaag ttataatctt
     3421 tttttagagc ttgttaatcg tatcaaattt gatagcatca aattgctttt tagtgtgaaa
     3481 tttaaccaag aagaagtaca aaatttagaa gaaaaagcaa atcaagaaaa tgaagcttta
     3541 tttgaaaaat cagtggaaat gggtgctagt gaggataatt taggcgaggc tgaatttaaa
     3601 aaagttccac gcaatgctcc ttgcccttgc ggaagcggta aaaaatttaa agaatgccat
     3661 ggaaaaagcg ggcctaaaca aggaatttta gcttgaaaaa aagcgtttta aaatatctac
     3721 tttttaaata cttaagattt gataaagagc aaccctttat caatctctct atgcttttgg
     3781 cttttttagg agtttgtgta ggactttgcg ttttacttgt agcaatggct atcatgaatg
     3841 gctttgataa agaatttgaa aagcgttttt ttgtgatgaa ttatcctatt accatagtgc
     3901 caaaatttta ttctcctatg gatgatgatt tggtaacaga gctcaaaaga gaatttcctc
     3961 atttgctttt tagtccgtat attagcactc aagttgtagc aaaagcggac aatcgctttg
     4021 aaggaggcgt cctttttggc gtgaatttta acgatgaagt taagatcaat gaagtggtag
     4081 ctaaagcttt aaaagatgag aatttaagcg gctttgatat acttgtgggt tcagtgcttg
     4141 cagatgagct taatttacat aaaaacgata agctttcact tatcttttca aatcttagcc
     4201 ccagtggatt ttctttggtt ccacaagcta aacgctttga tgtgaaagcg cgttttgctt
     4261 cagggcttat attttatgat aaagcttata tgtatacaga tgtaaatgca cttagaaaag
     4321 tacttggtat tagcaatcaa caaagttatg atggcgtaca tgtttatagc gaaaatgcat
     4381 ttaaggatgt agaaaaactt aaatcctacc taaagagtga ttatgctgtt gtaggctggt
     4441 gggaacaaaa tcaaaacttc ttttctgctc ttaaacttga aaaaagagcg ctttttattg
     4501 ttttgatgct tattatcttg gtggcaagct taaatatagt gagttcttta ctgatgatag
     4561 taatgaatcg tcgcaccgaa atcgcacttt tacttgcttt aggtgctagt aaattagaag
     4621 ttaagaaaag cttttttgcc ttaggcatgc taataggtgg tggcggtatg atcataggaa
     4681 tcatactcgc attttttgct ttgtggcttt taggaaattt tgatattgtc accttgcccg
     4741 cagatgttta tggtacgagc aaattaccgc ttgatttatc tgtgatggat ttttctttaa
     4801 ccttggtggg tgctttgata atcattgctt tatcttctta ttatcctgct aaaaaagcaa
     4861 cacaaatcaa tgttttagat actttaagaa acgaataggg aaaaaagatg gagcaaaaat
     4921 ttgacgaaaa taaattcatg caagagtatg ctagaaatca aagattaaaa tctcttactt
     4981 taaaaggtgt tttgattttt attataagca tagttttact tattccttta ttgatgttaa
     5041 aaaccttagt agaagataga aaatataatg cacaaaatgt tatttcattg atgggaaaag
     5101 cttggggtag tgatgagttt tatacgccaa gtttaaatga aaaaattttg cctaataaat
     5161 tagagctttg ggtggattta aaatatcaag aacgcattaa gggtatttat aaaattccgc
     5221 tttatactgc tttcgtggat tttaatgcaa gttttaatat ggaaaattta agcaattttg
     5281 atgaaaattc tatccaattt tcaaatggaa atttaaaaga tttacaattt aatatcttaa
     5341 aagatgtttt atgggtaagt ggaactttac aattaaaagg ttatggctct tttgatgtta
     5401 atatgcaagc taaagaaaat atcatacata taaactcaaa tgctacaaac ccttcctttg
     5461 aatatgcttt gccaaatgat tattctatcg ataaaaaggg ctttagtgct ttttatgaat
     5521 ttcaaaatag catctcaaat gatagggtgg agaaaagaag attgagtgtt gagttttatc
     5581 aaggggtgga tgagtatcgc ttgatcgatc gtatgataaa atatgggtat ttgtttatta
     5641 ttttaacttt cttggtgttg tttttatgcg agcttgcttc aaagaaaaat gttattttac
     5701 ttcaatacgc gattttagga gcaagtttga tagtatttta ccttatgctt ttaagtttta
     5761 gcgagcgcat aggatttaat tttgcttatc ttttttcaag cttggctata attatacctt
     5821 tatcacttta cactttaagc atcatggggc aaaagcgttt tgctatagta atggctacga
     5881 ttttatttat tttatattta tgtttgttta ttatgttaaa gcaagatgaa tatgcattat
     5941 tgataggaac ctttatagct atgtttggaa tttatgcagc tatgtatttt actagaaatt
     6001 taaataaaga ttatcatcaa ggatgatttt tttcttaatg ataatcttgt attagacttt
     6061 ttaaaatcac tccatcaagt cttaattcat aagctttttc aagcttatgt aaattttcta
     6121 ctaggagtaa aattttgcta tcaaagagat aaaattccgc tacttcagaa gcaaaacgag
     6181 ctaaattttc atcatcaaaa agtaaaaatt tagcccctaa agcattgctt agaaaaattt
     6241 catttttatc ttgtatcaaa acagcaaaat ccaaattttc attttttgca ttttggatga
     6301 tttcttcatt atacaaaaag caagaaattt gatctttttt tagttttttg ctttcatcaa
     6361 taaagcaaaa atttgaattt tgtgttaata aatagtgtcc taaaatcagc attttagttt
     6421 ccttatt
//
LOCUS       DBBXRO010000096         6262 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.097, whole genome shotgun sequence.
ACCESSION   DBBXRO010000096 DBBXRO010000000
VERSION     DBBXRO010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6262
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.097"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            98..454
                     /locus_tag="ACJFEZ_001406"
     CDS             98..454
                     /locus_tag="ACJFEZ_001406"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HGG0917517.1"
                     /translation="MKKLNEEEARVILNKGTEAPFSGKYNNFYEKGIYLCKQCGSKLY
                     RSEDKFKSGCGWPSFDDEIKGAIKRLPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     IRHCVNSISLEFVKGE"
     gene            458..1096
                     /locus_tag="ACJFEZ_001407"
     CDS             458..1096
                     /locus_tag="ACJFEZ_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HGG0917518.1"
                     /translation="MFSNVGSELYLMFFAGITLLAVLNPFGNLTQFLAMSDGLPLALR
                     KKLFRTILYTALAIVLAFLFSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTK
                     LATQSFDSYQEANEKEILRQSLIPMAFPMLVGPGTLASVIVISEDGGLDIAFGGVIIA
                     FIFMFALFHFAATIEKIVGKLILHVFSRIAQVFIVAMGCKMIIIGIKNIFNI"
     gene            complement(1182..1835)
                     /gene="aat"
                     /locus_tag="ACJFEZ_001408"
     CDS             complement(1182..1835)
                     /gene="aat"
                     /locus_tag="ACJFEZ_001408"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HGG0917519.1"
                     /translation="MESSILYSKLMDAPKDAPVFLSQKLEPDFILKAYRFGLFPWTNK
                     PVTWWCPDPRCVLNPSEIHIQKNMKKFINLYQIKLDYDFLSLIHLCRNTRPQSWIDDE
                     FIENYYELFKQGYVHTLELYEDKELIGGIYGLIIGKVFFGESMVSLRKNASKIALIKL
                     CKLLKPYDFVIDCQVYNKHLEFMGAKNIERKIFLNILKEKCDQESGFTNFSTLINQI"
     gene            complement(1810..3927)
                     /locus_tag="ACJFEZ_001409"
     CDS             complement(1810..3927)
                     /locus_tag="ACJFEZ_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0917520.1"
                     /translation="MKYQENLQKYLDNAKHLSTINRHEFTTCEHVLFAILKLSSDFKS
                     IFEELADAEFELLESELKNYIAEKNQSLDQEIEPVNSIVLDEILNHKNEIKIIDFLEK
                     LIQDDRTYSSFLLQKHGMNLEKIQDFKQNSEIENLNSYASDLTLLAQKGKIDPLIGRK
                     FELERIIQILSRRKKNNPILIGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIFSLDI
                     AGLLSGTKYRGDFEKRIKEVLEGLQKLPNAILFIDEIHTIVGAGATGESHTDFSNLLK
                     PALSNGTLKCIGATTFMEYKNTFDKNKALSRRFAKINVDEPSQEEAFQILQGLKSKYE
                     DFHKIKISDEVLQQAIVWGKKFFSDKYLPDSAIDLIDELGASYVLKAKTKKNADIKDL
                     EQVLAKMTHHHKMFEFDQNKALMNLSLNLKAKIFGQDEVIDKLVATLKQSFAGFKNLN
                     TPRGVFLFTGSSGVGKTELCKVLAEFLGLNLERFDMSEYAEKHSISKLIGSPAGYVGY
                     EDGGLLSNAVRKNPFSLILFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKADFKNTII
                     IMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLDDTVLVKII
                     QKELDEISKNLKNIQLVADEKAKLYLAKKAYNKEFGVRLLKRIISEEIGEKISDEILF
                     GKLKKGGIAKIKLNKNGKLDLIF"
     gene            complement(3924..4214)
                     /locus_tag="ACJFEZ_001410"
     CDS             complement(3924..4214)
                     /locus_tag="ACJFEZ_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HGG0917521.1"
                     /translation="MPKLKVLEKSKLKEPKMFKVILLNDDVTTMDFVIEVLINIFYHD
                     FETANKIMLEVHLNGSGICGIYTQEIALSKQKKVSDAAKLANFPLQTRVEEE"
     gene            complement(4214..4819)
                     /locus_tag="ACJFEZ_001411"
     CDS             complement(4214..4819)
                     /locus_tag="ACJFEZ_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HGG0917522.1"
                     /translation="MKKKTILSFFIIIGFFISACSHQEDIQNDFMFEEYSKGDKIVLN
                     SVNGGAKTLIRTDKGFIVEGEEDKVLMIDFFGTFCAPCKEEALELSKLWKNNSNKFII
                     MGLTHFEDVSDETVKKFADDYGAYYFLSNDSQNDRIIAQILKDIDYQSMEQLPFKVVM
                     KNGIYQNLSNYWDSNTSTNFYLGKIPTDFIQDDLDKIYKEK"
     gene            complement(4829..5281)
                     /gene="smpB"
                     /locus_tag="ACJFEZ_001412"
     CDS             complement(4829..5281)
                     /gene="smpB"
                     /locus_tag="ACJFEZ_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HGG0917523.1"
                     /translation="MKVIARNKKALFDYSIIERFESGVVLKGSEVVALRAGRANLKDS
                     FVRIIKGELFLLNAHISHLSTTHSYYKHEERAARKLLMHRKQIDKLLGKVSIEGYTLV
                     VLELYFNHKNKVKATLALAKGKNLHDKRESLKKKQADMEARSAMKNYK"
     gene            complement(5278..6048)
                     /locus_tag="ACJFEZ_001413"
     CDS             complement(5278..6048)
                     /locus_tag="ACJFEZ_001413"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HGG0917524.1"
                     /translation="MKAYAKANIFLKLVGFDKRRYHLLESRFILLKNLFDEIHIVEKS
                     SNSPKGFEIISNFNCEDNIITKAYHLLCQNGYQNKLEEFFKTKSLKLIKNIPTCAGLG
                     GGSSDCASFLMLINEELNLKLSTQKLIELSTQLGSDIAFFLSGFESANVSGCGEIIEE
                     FNDTIPSLEWVFPEVSCQTKKVYDEFDKGEIDFEKNILEAKIYKDLNTKELLETFKNT
                     QLNDLFTPCVTLYPKMFLFLEQGFFLSGSGSSVFKVHQ"
     gene            complement(6045..>6262)
                     /locus_tag="ACJFEZ_001414"
     CDS             complement(6045..>6262)
                     /locus_tag="ACJFEZ_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbon storage regulator"
                     /protein_id="HGG0917525.1"
                     /translation="SRKENESIVIGEGIEIKIVQTGKGYAKIGIDAPKSLMILRKELL
                     TQIKDENLHSVVKNDVKLDDLSKKLIP"
BASE COUNT         1973 a          999 c          912 g         2378 t
ORIGIN      
        1 caaactaaag cttttttgga aaatacattt tgataaaaaa taaaatttgc tataattctt
       61 aagtagtaat ttagaacaat ttcatcaagg ataaactatg aaaaaattaa acgaagaaga
      121 agctagggtt attttaaaca agggcactga agctcctttt agtggtaaat ataataattt
      181 ttatgaaaaa gggatctatc tttgcaagca atgcgggtct aagctttata gatctgaaga
      241 taaattcaag tcaggttgtg gatggccaag ctttgatgat gaaatcaaag gggctattaa
      301 aagacttcct gataaagatg gcattcgcac ggaaattgta tgtgcaaatt gcaatggcca
      361 tttaggccat gtatttgagg gagagggttt ttctgctaaa aatattagac attgtgttaa
      421 ttccatctct ttagaatttg taaaaggtga ataataaatg ttttcaaatg taggctctga
      481 gctttattta atgttttttg cgggcataac attattggct gtgttaaatc cttttggtaa
      541 tttaacgcaa tttttagcca tgagcgatgg cctaccttta gcccttagaa aaaaactttt
      601 tagaactata ctttatacag cattggctat tgtgcttgct tttttatttt caggaccttt
      661 gtttatgaat tatattttta gggtttcttt agatgatttg agagtttctg ggggtttggt
      721 tttaattata atggctatta aaaatttatt attttcaacc aagcttgcaa ctcaaagttt
      781 tgattcttat caagaagcaa atgagaaaga aattttacgc caaagtttaa tacctatggc
      841 ttttccaatg cttgtaggtc ctggaacctt agctagtgtg atagtgattt cagaggatgg
      901 tggattggat atagcttttg gaggtgtgat aatagctttt atttttatgt ttgcactttt
      961 tcattttgct gctacgattg aaaaaattgt tggaaagctt attttacatg tcttttcgcg
     1021 tatcgctcag gtttttattg tggcgatggg gtgtaagatg attataatag gtatcaaaaa
     1081 tatatttaac atttgattag acaataaaaa gttgatatga atgcaaatca caagctaatg
     1141 ataatcaaaa attaaaaaat aagtataaaa atgaagagaa gttatatttg attgattaag
     1201 gtgctaaaat ttgtaaatcc actttcttga tcacattttt cttttaaaat atttaaaaat
     1261 atttttcttt cgatattttt agctcccata aattctaaat gtttattata aacttgacaa
     1321 tctatgacaa aatcataggg tttaagaagc ttgcaaagtt tgattaaagc tatttttgaa
     1381 gcattttttc taaggcttac catactttct ccaaaaaaaa ccttacctat aatcagtcca
     1441 taaattcccc caattaattc tttatcctca taaagttcta aagtatgaac gtatccttgt
     1501 ttaaaaagct catagtaatt ttctataaac tcatcatcaa tccaactttg aggacgcgtg
     1561 ttgcgacaca aatggataag gcttaaaaaa tcataatcaa gtttaatttg ataaagattg
     1621 ataaattttt tcatattttt ttggatatga atttcgctgg gatttaatac acatctagga
     1681 tcagggcacc accaagtaac gggtttgttg gtccatggaa aaagcccaaa acgataggct
     1741 tttaagataa aatcaggttc tagtttttga cttaaaaaaa cgggtgcgtc tttgggcgca
     1801 tccataagtt tagaatataa gatcgagctt tccattttta ttaagcttga ttttagctat
     1861 cccgcctttt ttaagttttc caaataaaat ttcatcactg attttttctc cgatttcttc
     1921 ggaaataatg cgttttaata atcttactcc aaattcttta ttgtaggctt ttttcgctaa
     1981 gtatagctta gctttttcat cagcaactaa ttggatattt ttaagatttt tagaaatttc
     2041 atctaattct ttttgaatga ttttaacaag cacagtatca tctagatcgt taaaatgaag
     2101 aattttatca atacgattga taaattcagg tgcaaaaaaa tctttaatag cacggttgct
     2161 tttttcttca tttttgctta ggaatccaag ctcattgctt tcttttagcc ctaaatttga
     2221 agtcatgatt ataatagtat ttttaaagtc agctttaagg ccactattgt ctgtaagctc
     2281 tgcattatca aagatttgca agaaagtatt gcttaaatca ggatgagctt tttctatctc
     2341 atcaaagagg ataagactga aaggattttt tcgaaccgca ttgcttaaaa gtcctccatc
     2401 ttcatatccc acatatcctg caggagaacc tatgagtttg cttatgctat gtttttctgc
     2461 atattcgctc atatcaaaac gctctaaatt taaacctaaa aattctgcta aaactttgca
     2521 aagttcagtt tttccaactc cgctagatcc tgtaaataaa aatactcctc gtggggtatt
     2581 taaattttta aatcctgcaa aactttgttt tagggtcgca acaagcttgt caatcacttc
     2641 atcttgacca aatatttttg cctttaaatt aagacttaga ttcatcaagg ctttattttg
     2701 atcaaattca aacattttat gatgatgagt cattttggct aaaacttgtt ctaaatcttt
     2761 aatatcggca ttttttttag tttttgcctt aagaacataa gaagctccaa gctcatcgat
     2821 aagatctata gcactatcag gaaggtattt atcgctgaaa aatttcttgc cccaaacaat
     2881 agcttgctga aggacttcat cactaatttt aatcttatga aaatcctcat atttgctttt
     2941 taagccttgt aaaatttgaa aagcttcttc ttggcttggt tcatctacat tgattttagc
     3001 aaaacggcga cttaaggctt tgtttttatc aaaagtattt ttatattcca taaaagtggt
     3061 tgcacctata cattttaaag taccattgct taaggctggc ttgagtagat tagaaaaatc
     3121 tgtatgtgat tctccagttg ctccagctcc aactatggtg tgaatttcat ctataaataa
     3181 gatagcatta ggaagttttt gaagtccttc taagacttct ttgattcgtt tttcaaaatc
     3241 gccacgatat ttagtccctg aaagcaatcc tgctatatct aggctaaaaa ttttagcatt
     3301 ttgcaaattt tttggaactt ttttttcagc aatggccaat gcaagtcctt caactatcgc
     3361 agtttttcca actccagctt ctccgattaa aataggattg tttttcttgc gtcttgatag
     3421 gatttgtata atgcgctcaa gctcgaattt tcttcctatt aaagggtcta ttttaccttt
     3481 ttgcgccaaa agcgttaagt cgcttgcgta agaatttaaa ttttctattt cgctattttg
     3541 tttaaaatct tgaatttttt ctaaattcat accatgtttt tgtaaaagaa agctcgaata
     3601 tgttctatca tcttggatga gtttttctaa aaaatcaatg atttttattt catttttatg
     3661 attaagaatt tcatctaaaa ctatagaatt aacaggttcg atttcttgat ccaaactttg
     3721 gtttttttct gctatataat ttttaagttc actttctaaa agttcaaatt cggcatctgc
     3781 gagttcttca aatattgatt taaaatctga acttagtttt aatatagcaa aaagcacatg
     3841 ctcacaagtt gtaaattcat gacgattgat agtgcttaaa tgtttagcat tatcaaggta
     3901 tttttgtaaa ttttcttgat atttcattct tcttccactc tagtttgtaa aggaaaattt
     3961 gccaatttag cagcatcaga aacttttttt tgctttgaaa gtgcaatttc ttgagtgtaa
     4021 attccacaaa ttccactgcc attaagatga acctctaaca taattttatt agctgtttca
     4081 aaatcatggt agaaaatatt gattaaaact tcaataacaa agtccatcgt ggttacatca
     4141 tcgtttaata atataacctt aaacatttta ggctctttaa gcttactttt ttctaatact
     4201 tttaactttg gcattatttt tctttataaa ttttatctaa atcatcttgt ataaaatctg
     4261 ttggaatttt acctaaataa aaatttgttg aagtgttact atcccaataa ttgctaagat
     4321 tttgataaat tccatttttc attactactt taaaaggcaa ttgctccatg ctttgataat
     4381 ctatatcttt taaaatttga gcaataatac gatcattttg cgaatcatta cttaagaaat
     4441 aataagctcc ataatcatca gcaaattttt taaccgtttc atcacttaca tcttcaaaat
     4501 gtgttagccc catgataata aatttatttg agttattttt ccaaagtttg ctaagctcta
     4561 aagcttcttc tttgcaagga gcgcaaaaag ttccaaaaaa atcaatcatc aacactttat
     4621 cttcctcgcc ttcaacaatg aagcctttat cggttcgaat taaggtttta gctcctccat
     4681 ttacgctatt taatacaatc ttatcgcctt tgctgtattc ttcaaacata aaatcatttt
     4741 gtatgtcttc ttggtgcgag caagcgctta taaaaaaacc tataatgata aaaaatgaca
     4801 atatcgtttt ctttttcata ctagtccttt atttgtaatt tttcatagca gatcttgctt
     4861 ccatatctgc ttgttttttc tttaaacttt cgcgtttatc gtgcagattt tttcctttgg
     4921 ctaaggctag cgtggcttta actttgtttt tatggttaaa atagagttct aagactacca
     4981 aggtgtatcc ctcaatacta actttgccta aaagcttatc tatttgtttg cggtgcatta
     5041 aaagttttct agcagctctt tcttcatgtt tataataaga atgcgtagtg ctaaggtgcg
     5101 atatatgagc atttagcaaa aataattcac ccttaataat acgcacaaaa gagtctttta
     5161 aatttgccct tccagcgcgt aaagccacga cttcactacc ctttaaaacc actcctgatt
     5221 caaagcgttc tataatgcta taatcaaata aggctttttt atttctagca atgactttca
     5281 ttgatgtacc ttaaaaacac tacttccgct tccacttagg aaaaaacctt gttctaaaaa
     5341 aagaaacatt ttaggatata aagttacaca aggagtaaat aaatcattaa gctgggtatt
     5401 tttaaaagtt tctaaaagtt ctttcgtgtt taaatctttg taaattttag cttcaagaat
     5461 gtttttttca aaatcaattt cccctttatc aaattcatca taaacttttt tagtttgaca
     5521 agatacttca ggaaaaaccc attctaggct cggtatagta tcattaaatt cttctatgat
     5581 ttcaccacat ccgcttacat tagcactttc aaaaccactc aagaaaaaag caatatcact
     5641 gcctagttga gtgcttaatt ctataagttt ttgagtgctt aattttaagt ttagttcttc
     5701 attaattagc attaaaaaac ttgcgcaatc actactacct cccccaagtc ctgcacatgt
     5761 ggggatattt ttgattaatt ttaagctttt ggttttaaaa aattcttcta atttattttg
     5821 atagccattt tgacaaagta aatgataagc ttttgtgatg atattatcct cgcaattaaa
     5881 attgctaatg atttcaaaac ctttaggaga attagagctt ttttcaacga tatgaatttc
     5941 atcaaaaagg ttttttaaaa gtataaagcg agattctaaa agatgatatc gtcttttatc
     6001 aaatccgaca agttttaaaa aaatatttgc tttagcatat gctttcatgg gatcaatttt
     6061 ttgcttaaat catctaattt aacatcgttt tttaccacag aatgtaaatt ctcatctttg
     6121 atttgagtaa ggagttcttt tcttaaaatc attagagatt ttggagcatc gatgcctatt
     6181 ttggcatatc cttttccagt ttgaacgatt ttgatttcaa ttccttcacc aataacaata
     6241 ctttcatttt cttttcgcga ta
//
LOCUS       DBBXRO010000097         6248 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.098, whole genome shotgun sequence.
ACCESSION   DBBXRO010000097 DBBXRO010000000
VERSION     DBBXRO010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6248
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.098"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            102..797
                     /gene="dsbI"
                     /locus_tag="ACJFEZ_001415"
     CDS             102..797
                     /gene="dsbI"
                     /locus_tag="ACJFEZ_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HGG0917526.1"
                     /translation="MKNLYWFVYFSKWQDMRNPWFIMSIIMISLVLIAHFLFQEYLYM
                     RPCEQCVYIRLDMLIIALGGIIALINPKNTIIKILAYTLAFYGIWLGLEHSLNLNRIH
                     EAISTENPFSGVNGCRDIPLYPFNLPLHERFPSWFKPVGQCGMDFPMVPKSAYLNAFQ
                     EFFVGKNGIYNNGWYLIPSLKFMNMATCCFIAFLCSFILLFIMFVSYVFSQRKIVFTI
                     ITISLVVALKILG"
     gene            886..1524
                     /locus_tag="ACJFEZ_001416"
     CDS             886..1524
                     /locus_tag="ACJFEZ_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HGG0917527.1"
                     /translation="MFKKMTKILTSLSLVCTFAMADDFITLSETLPDSKNSVVEAFSY
                     KCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEYANELNELFAFAQFKDEQNGK
                     DASYSDSLSHKLADVYFVVYFINKQDNFSSSDEFYDIGLKAMNVDKNEVLNFLSTPKA
                     KEILNEFKRANDIARTYGTPAFVVNGKYQINPSAISSMQALEDIVKKLSNMP"
     gene            1649..1789
                     /locus_tag="ACJFEZ_001417"
     CDS             1649..1789
                     /locus_tag="ACJFEZ_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917528.1"
                     /translation="MKNLSVQEKKDLDNCVFKTLGKKEPSALVLLFKKILLKLKTFFY
                     SK"
     gene            complement(1777..2409)
                     /locus_tag="ACJFEZ_001418"
     CDS             complement(1777..2409)
                     /locus_tag="ACJFEZ_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917529.1"
                     /translation="MKKVFPILISLCSLSLANVYEKLNDFAYEKKPNKDFKIQEVKLV
                     QFLQDDKNCLELLIEAGRVRILKSYNECQKLSKDADFQKFLNEDFLRLYKNNGYSINE
                     NLQDLKKAMQDIMIYYKLRFAFSKNIQDMSKNKNLSILNIDEKEGGTLLYKINNQACV
                     AIELARHNSRMAMKVYGMENLDKECKLFIQAPSFKNISFTKNDFKWYYLE"
     gene            complement(2406..2648)
                     /locus_tag="ACJFEZ_001419"
     CDS             complement(2406..2648)
                     /locus_tag="ACJFEZ_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917530.1"
                     /translation="MPQTHNKNLKNELEDLRYELSIVLEAMLLYAGVKREKLESAIEA
                     YIDNIDSVLENSNKEGVDEVLEVVEFLKNQHSELFQ"
     gene            complement(2629..3681)
                     /locus_tag="ACJFEZ_001420"
     CDS             complement(2629..3681)
                     /locus_tag="ACJFEZ_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HGG0917531.1"
                     /translation="MKIYHLSHTDLDGYACQYIVNFYFKNVNFYNSNYGKEINENFNA
                     ILADIEKDNSFGQAIILITDLNLNLNQCEEFDKICKEKNIKIFLLDHHQSGEECAQKY
                     AWYLLDNQRCATKITYDFFSKICKPDLELLNFAQVVNAVDIWLSEDANFELGKVFLGL
                     IANAKEINRVMFKEAQVFYMFFLLERARKFINQPNSHILLDNAIHFIKKDFFAKNHDD
                     TLSNLISYFVVEKLSELKEEFSIEYEGHKGILTSNIGNTSIIGNEFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKKLVGGGGHKNASGGLFAAYKDGANYNYIKAQIVDLI
                     KSKELKKGNSDATNTQ"
     gene            complement(3690..5867)
                     /gene="flhA"
                     /locus_tag="ACJFEZ_001421"
     CDS             complement(3690..5867)
                     /gene="flhA"
                     /locus_tag="ACJFEZ_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HGG0917532.1"
                     /translation="MAKNKLVDLVFPFLGPLIGPVLRAKSLTIVGFIVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPAAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEIIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGAFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPHLSLGFMALVFLGLGYLTK
                     QVKEGKIEVNAPKKAKASAANAASGAGGAGGVTAPAKKSEEEILKEEEHKINDILKVE
                     ILELELGYGLIKLAESELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLK
                     GVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIV
                     IDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKI
                     LKDLLKHNIPIKDMLTILESISDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLD
                     IFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRTEVAAVANGRIKPFILCV
                     EPQLRKFIADICYNFNINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(5854..>6248)
                     /locus_tag="ACJFEZ_001422"
     CDS             complement(5854..>6248)
                     /locus_tag="ACJFEZ_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HGG0917533.1"
                     /translation="SEYALLSLIYIAHKENPQDVDSLALELNIPKSFLAKILQTLAKD
                     NLLKSFKGAKGGFALIKEPSQYSIKEIVNSAEKKEVSVFECSGGVCPNNKEENCTLMP
                     MLVNLQNKVDEFLDSLTLADIMNHNGKK"
BASE COUNT         2053 a         1064 c          891 g         2240 t
ORIGIN      
        1 aaaacatttt ccaaatttta aaatttttaa gaatgtattt attattaagc ttttataatg
       61 attgcttgtc tgtaagtatt atttaaggag taaaaaataa ggtgaaaaat ttatattggt
      121 ttgtttattt ttctaaatgg caagatatgc gtaatccttg gtttattatg agtattataa
      181 tgataagcct tgttttaata gcgcattttt tatttcaaga gtatctttat atgagacctt
      241 gtgaacaatg tgtttatata aggttagata tgttaattat agctttagga ggcatcattg
      301 cgctgataaa tcctaaaaat accattatta aaatccttgc ctatacttta gctttttatg
      361 gaatttggct tggattagaa cattcgttga atttaaatcg cattcatgaa gctattagca
      421 cggaaaaccc tttcagtggt gttaatggat gtcgcgatat tccactctac ccttttaatc
      481 tgcctttaca cgaacggttt ccttcttggt ttaaacccgt aggacaatgc ggaatggatt
      541 ttcccatggt tccaaagtct gcttatttaa atgctttcca agaatttttt gtaggaaaaa
      601 atggaattta taataatggc tggtatttaa tccctagttt gaaatttatg aatatggcta
      661 cttgctgttt tatagcattt ttatgctctt ttattttact ttttataatg tttgtaagct
      721 atgtttttag tcaaagaaaa attgttttta ctatcattac tataagctta gttgtagcgc
      781 ttaagatatt gggttaaaaa atacttattt taaagattaa attttttact tgtttatcct
      841 ttttaaatag aattactttt tatatcaaat taaggataaa caatcatgtt taaaaaaatg
      901 acaaaaattt tgacaagctt gagtcttgtt tgcacttttg cgatggcaga tgattttatc
      961 accctatcag aaactttgcc tgattctaaa aattctgttg tggaggcttt ttcctataag
     1021 tgtatacatt gttacaatca ccataaattt ggcaccttag aaaaacttag agaggctttt
     1081 ccaaatttgc attttaaact ctatcctgtg agccttatga atggagaata cgcaaatgaa
     1141 cttaacgagc tttttgcctt tgcccaattt aaagatgagc aaaatggcaa agatgctagt
     1201 tatagtgata gtttatcaca taaacttgcc gatgtttatt ttgtagttta ttttataaac
     1261 aagcaggaca atttttcaag ctcggatgaa ttttatgata taggcttaaa ggctatgaat
     1321 gtcgataaaa atgaagtatt gaatttttta agcaccccta aagccaaaga aattttaaac
     1381 gaatttaaaa gagcaaatga tatagctagg acttatggca ctcctgcttt tgttgtaaat
     1441 ggtaaatatc aaatcaatcc tagcgccatc agttcaatgc aagctttaga agatatcgtc
     1501 aaaaaactta gtaatatgcc ataaaataaa acaatgcatt ttctaacact agataatgca
     1561 ttgaaattta atattaattt ttcttttaat gcaaaaataa agttctttag ttataattag
     1621 ttcgcaatat ttttaaaggt tgtttttaat gaaaaattta agcgttcaag aaaaaaaaga
     1681 tcttgataat tgtgttttca aaactcttgg taaaaaagaa ccctctgctt tagtgctttt
     1741 atttaaaaaa atacttttaa aattaaagac tttcttttat tctaaataat accatttaaa
     1801 atcatttttt gtaaaagaaa tattcttaaa agatggagcc tgtataaata atttgcattc
     1861 tttatctaaa ttttccattc catagacttt catagccatt ctagaattgt gtcttgctag
     1921 ctctatggct acgcaagctt gattgttgat tttataaaga agtgtgcctc cttctttttc
     1981 atctatattt aaaatgctta aatttttatt tttactcata tcttgtatat ttttactaaa
     2041 agcgaaacgc aatttataat atatcataat atcttgcata gcctttttaa gatcttgcaa
     2101 attttcattg atagaatatc cattgttttt atacaatctt aaaaaatctt cattaagaaa
     2161 tttttgaaag tcagcatcct tgcttaattt ttgacactca ttatagcttt taagaattct
     2221 tacccgccct gcttctatca aaagctcaag gcaattttta tcatcttgta aaaattgcac
     2281 caatttaact tcttgaattt taaaatcttt attaggcttt ttttcatatg caaaatcatt
     2341 gagcttttca taaacattag caagcgataa agaacaaaga ctaataagta tcggaaatac
     2401 ttttttcatt gaaaaagctc tgaatgttga ttttttaaaa attctaccac ttctaaaact
     2461 tcatcaaccc cttctttgtt tgaattttcc aagacactgt ctatattatc tatataagct
     2521 tctatagcac tttctagctt ctctctttta acacctgcat ataaaagcat agcttctaaa
     2581 actatgctta attcatatct tagatcttct aattcatttt ttaaattttt attgtgtgtt
     2641 tgtggcatct gaatttcctt ttttaagttc tttacttttt atcaaatcaa cgatttgagc
     2701 tttgatatag ttataatttg ctccatcttt ataagctgca aaaagcccac cactagcatt
     2761 tttatgccct cctccaccta ctagcttttt agccatcaag cttacatcaa tcttaccatt
     2821 tgcacgaaaa cttaaggttt ttctagagct tacatcgatg aaaaaatcat agtcgggatt
     2881 tttaactaaa aattcattac ctatgataga ggtattgcct atatttgagg taagaattcc
     2941 cttatgaccc tcatattcta tactgaattc ttcttttaac tcgctaagct tttctactac
     3001 aaaataagag atgagattag aaagagtgtc atcatgattt ttagcaaaaa aatctttttt
     3061 aataaaatgg atagcattat ctagtaaaat atgtgaattg ggttggttta taaattttct
     3121 tgctctttca agcaagaaaa acatataaaa aacttgagct tctttaaaca tcacacgatt
     3181 gatttctttt gcattggcaa tcaaacccaa aaaaactttt ccaagctcaa aattcgcatc
     3241 ctcacttagc caaatatcaa cagcatttac aacctgagca aaatttaaaa gttctaaatc
     3301 aggcttacaa attttagaga aaaaatcata agtgatttta gtcgcacatc tttgattatc
     3361 cagtagatac cacgcgtatt tttgagcaca ctcttcaccg ctttgatgat gatctaataa
     3421 aaagattttg atattttttt ctttacaaat tttatcaaat tcttcacact ggtttaaatt
     3481 taaattcaag tcagtgatta aaataatagc ctgcccaaaa ctattatctt tttctatatc
     3541 tgctaaaatt gcattaaaat tttcattgat ctctttacca taattagaat tataaaaatt
     3601 tacattttta aaataaaaat tgactatata ttgacaggca tagccatcaa gatcagtatg
     3661 tgaaagatga taaattttca ttgatttcct taaagttcta tcctaataat accttcggta
     3721 ttaaaatttg tattttctgc tatttctgca aaactgagta caactatatt gatattaaaa
     3781 ttatagcaaa tatcagcaat gaattttcta agttgtggct caacacaaag tataaaaggc
     3841 ttgatacgcc catttgctac tgcggcaact tcagttctta aagtgtctac caaagttcct
     3901 gtttgcgcta cacttaaagg tagatggtag ctaccatctc taaattgcac attttccatt
     3961 aaaactgcag aactagcaga gtctaaaatg aaaatatcta aatttccttt atcgtcaaga
     4021 tacatattag taatcattct agccaaagac gcccttacat gctctataat catatcaaag
     4081 cttttgctta cttcagcaat atcgcttatg gattctaaaa tagtcagcat gtctttaata
     4141 ggtatattgt gcttgagtaa atctttaaga attttttgaa taagactcac aggagctaca
     4201 cctaaagcac cctctactat gattggataa tcatttttaa ccttatcaag aagattttgc
     4261 acctcttggc gtgtaagaag ttcgcttgca tgtgctttga taagctcgct catatgcgtt
     4321 gagatcacac ttgcaggatc tataacgata tagccattta aagttgcttc atcttttaaa
     4381 tttgcatcta tccaaagtgc atcagagtta aaagcaggtt cttttgtagc aatcccttca
     4441 atctcttctg tgataaagcc actatccata gccaaatatt tatcaggata aatttcagca
     4501 cttgctatag atacgccctt tagtttaaag ctgtattcat tgggcttaag tcgtaaatta
     4561 tctcgaattc taatttttgg cattaaaaag cccaagcttt cggcaatact tcttctcatg
     4621 gagcgaattc tttcggttaa ttcgctttcg gcaagtttta tcaaaccata acctagctca
     4681 agctctaaaa tttcaacctt gagtatatcg tttattttat gctcttcttc ttttaaaatt
     4741 tcttcttcgc tttttttagc aggagcagta actccgccag ccccacccgc tccacttgca
     4801 gcattggccg cacttgcttt tgctttttta ggtgcattaa cttcgatttt accctctttt
     4861 acctgtttgg ttagataacc aagtcctaaa aataccaaag ccataaaacc tagtgataaa
     4921 tgtggcaaac ctggaacaag agcaaagata aaaaggacaa aacctacgat taaaagcgtt
     4981 cggtattcgc ttaaaagctg tgtcaatgtc ccttcggcaa aattttcctc atccttactt
     5041 gcgcgggtaa tgataatagc tgttgctgta gaagtgataa gtcctggaat ttgtgataca
     5101 agaccatcgc ctatggtaag tatagtatag gtggaagctg catcagataa ggccatatcg
     5161 tgctgaaaag cacctattaa aaagccgcct ataatattta taatggttat aataatacct
     5221 gcaaccgcat cccctttgat aaatttagaa gaaccatcca ttgcaccata gaaattggct
     5281 tcagcgataa tttcttgacg cctcgctctt gcagtttgct catcaataag tcctgcattt
     5341 aaatccgcat cgatagccat ttgttttcct ggcatcgcat caagggtaaa tcttgcttgt
     5401 acttcagaga cccttgtact acctttggtt acaaccataa agttgatcaa aaccaaaata
     5461 caaaatacaa tcaccccaat gaccatattt ccacccacaa caaattctcc aaaggctgcg
     5521 atgatctcac tcactgctgc tggaccattc tgcccttcgc ttagaatcat tcttgtagtg
     5581 gctatattta aagaaagtct aaaaagcgta atgatgagga taagagttgg aaaagtggtt
     5641 aaatccgttg gtttagggat ataaatagaa attaaaataa taagcactga caaagcaata
     5701 cttaaagcta aaaaaaagtc caaaatagga cttggcaaag gaacgataat aatagctaaa
     5761 atacatacta taaatccaac tatagtaagg cttttagccc ttaatacagg accaattaaa
     5821 ggccccaaaa aaggaaaaac aagatcgact aatttatttt ttgccattat gattcataat
     5881 atccgctagg gtaagggagt ctaaaaattc atctactttg ttttgtaaat ttacaagcat
     5941 tggcataaga gtacaatttt cttctttgtt gttagggcat actccaccac tgcattcaaa
     6001 aacacttact tctttctttt ctgcactatt gacaatttct tttatgctgt attgacttgg
     6061 ctctttaata agagcaaaac cacctttagc gcctttgaag gattttaata aattgtcttt
     6121 agctagagtt tgtaaaattt tcgctaaaaa acttttagga atattaagtt ctaatgctaa
     6181 agaatcaaca tcttgaggat tttctttatg agcgatataa atcaaagaaa gtaaagcata
     6241 ctcgctag
//
LOCUS       DBBXRO010000098         6177 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.099, whole genome shotgun sequence.
ACCESSION   DBBXRO010000098 DBBXRO010000000
VERSION     DBBXRO010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6177
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.099"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            213..1725
                     /locus_tag="ACJFEZ_001423"
     rRNA            213..1725
                     /locus_tag="ACJFEZ_001423"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            1826..1901
                     /locus_tag="ACJFEZ_001424"
     tRNA            1826..1901
                     /locus_tag="ACJFEZ_001424"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1859..1861,aa:Ala,seq:tgc)
     gene            1910..1986
                     /locus_tag="ACJFEZ_001425"
     tRNA            1910..1986
                     /locus_tag="ACJFEZ_001425"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1944..1946,aa:Ile,seq:gat)
     gene            2595..5650
                     /locus_tag="ACJFEZ_001426"
     rRNA            2595..5650
                     /locus_tag="ACJFEZ_001426"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            5985..6101
                     /gene="rrf"
                     /locus_tag="ACJFEZ_001427"
     rRNA            5985..6101
                     /gene="rrf"
                     /locus_tag="ACJFEZ_001427"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         1919 a         1105 c         1501 g         1652 t
ORIGIN      
        1 ttttttgttt ttgttcttta aaattaatat tgttatttca aatcttatta gtcaatcttt
       61 gaaatctaaa taagtgatcg attgagccag aaggatttag gcataagtaa ttatgtaaaa
      121 tctattcaat ctaaatattt aaagattaaa agtttttctt tttaatcttc attacttttt
      181 ctttgaagaa aaagattaaa ctatctataa tttttatgga gagtttgatc ctggctcaga
      241 gtgaacgctg gcggcgtgcc taatacatgc aagtcgaacg atgaagcttc tagcttgcta
      301 gaagtggatt agtggcgcac gggtgagtaa ggtatagtta atctgcccta cacaagagga
      361 caacagttgg aaacgactgc taatactcta tactcctgct taacacaagt tgagtaggga
      421 aagtttttcg gtgtaggatg agactatata gtatcagcta gttggtaagg taatggctta
      481 ccaaggctat gacgcttaac tggtctgaga ggatgatcag tcacactgga actgagacac
      541 ggtccagact cctacgggag gcagcagtag ggaatattgc gcaatggggg aaaccctgac
      601 gcagcaacgc cgcgtggagg atgacacttt tcggagcgta aactcctttt cttagggaag
      661 aattctgacg gtacctaagg aataagcacc ggctaactcc gtgccagcag ccgcggtaat
      721 acggagggtg caagcgttac tcggaatcac tgggcgtaaa gggcgcgtag gcggattatc
      781 aagtctcttg tgaaatctaa tggcttaacc attaaactgc ttgggaaact gatagtctag
      841 agtgagggag aggcagatgg aattggtggt gtaggggtaa aatccgtaga tatcaccaag
      901 aatacccatt gcgaaggcga tctgctggaa ctcaactgac gctaaggcgc gaaagcgtgg
      961 ggagcaaaca ggattagata ccctggtagt ccacgcccta aacgatgtac actagttgtt
     1021 ggggtgctag tcatctcagt aatgcagcta acgcattaag tgtaccgcct ggggagtacg
     1081 gtcgcaagat taaaactcaa aggaatagac ggggacccgc acaagcggtg gagcatgtgg
     1141 tttaattcga agatacgcga agaaccttac ctgggcttga tatcctaaga accttttaga
     1201 gataagaggg tgctagcttg ctagaactta gagacaggtg ctgcacggct gtcgtcagct
     1261 cgtgtcgtga gatgttgggt taagtcccgc aacgagcgca acccacgtat ttagttgcta
     1321 acggttcggc cgagcactct aaatagactg ccttcgtaag gaggaggaag gtgtggacga
     1381 cgtcaagtca tcatggccct tatgcccagg gcgacacacg tgctacaatg gcatatacaa
     1441 tgagacgcaa taccgcgagg tggagcaaat ctataaaata tgtcccagtt cggattgttc
     1501 tctgcaactc gagagcatga agccggaatc gctagtaatc gtagatcagc catgctacgg
     1561 tgaatacgtt cccgggtctt gtactcaccg cccgtcacac catgggagtt gatttcactc
     1621 gaagccggaa tactaaacta gttaccgtcc acagtggaat cagcgactgg ggtgaagtcg
     1681 taacaaggta accgtaggag aacctgcggt tggatcacct cctttctaga gtacaaagta
     1741 ataagtctca caactattac ttcattataa actcaattga ttcttgttta gatttcaaag
     1801 attgatgata aagctaattg tttatgggga attagctcag ctgggagagc gcctgctttg
     1861 cacgcaggag gtcagcggtt cgatcccgct attctccacc atttattaag ggcctatagc
     1921 tcagctggtt agagtgcacc cctgataagg gtgaggtcac aagttcaagt cttgttaggc
     1981 ccaccataga aatatcaatc ttaaaaagat aaaaacaaga tttgaaatca agctttaaaa
     2041 tctaaagcaa gtatatattt ataaatatac tttatatacc atatacttcc tttaggtttt
     2101 aaacctaaat gttctttata attatcattg ttaagagtca caagcaagtt ttaataaaaa
     2161 caattttaca ggacttgtta aaggataaaa ctcaattatc ttttctttgg ttttatttat
     2221 atcttttaac tatctttatt ttttataata aagagaatat tagatctaaa attttaaatt
     2281 aaagataagt ttcaaactca cgacttagtt tagatatttt tagtatttat attaagtgtt
     2341 tgaatgcttt ccgtcttaag ataatgaagt cttatcgtaa aaactttaac aaggaagtga
     2401 tgcgttttag aatcaataat aaaaggtaga agttagatta tatctaactt ttatgcatat
     2461 tcttagcaga agaagcaaga aagactatta gtctttaact tactttatca gcctaatatc
     2521 ttttaggttg gcggggtagg tctttagctt gcttcttagt caaggctttg ccttgacgct
     2581 aaagaaggta aaaaaggtaa gctactaaga gcgaatggtg gatgccttga ctggtaaagg
     2641 cgatgaagga cgtactagac tgcgataagc tacggggagc tgtcaagaag ctttgatccg
     2701 tagatttccg aatggggcaa cccaatgtat agagatatac attacctata taggagcgaa
     2761 cgaggggaat tgaaacatct tagtaccctc aggaaaagaa atcaatagag attgcgtcag
     2821 tagcggcgag cgaaagcgca agagggcaaa cccagtgctt gcactggggg ttgtaggact
     2881 gcaatgtgca agaggtgagt ttagcagaac attctggaaa gtatagccat agagggtgat
     2941 agtcccgtat gcgaaaaaca aaccttagct agcagtatcc tgagtagggc gggacacgag
     3001 aaatcctgtc tgaagctggg tcgaccacga tccaacccta aatactaata ccagatcgat
     3061 agtgtacaag taccgtgagg gaaaggtgaa aagaactgag gtgatcagag tgaaatagaa
     3121 cctgaaacca tttgcttaca atcattcaga gccctatgta gcaatacagg gtgatggact
     3181 gccttttgca taatgagcct gcgagttgtg gtgtctggca aggttaagca aacgcgaagc
     3241 cgtagcgaaa gcgagtctga atagggcgct tagtcagatg ctgcagaccc gaaacgaagt
     3301 gatctatcca tgagcaagtt gaagctagtg taagaactag tggaggactg aacccatagg
     3361 cgttgaaaag ccccgggatg acttgtggat aggggtgaaa ggccaatcaa acttcgtgat
     3421 agctggttct ctccgaaata tatttaggta tagcgttgtg tcgtaatata agggggtaga
     3481 gcactgaatg ggctagggca tacaccaatg taccaaaccc tatcaaactc cgaatacctt
     3541 atatgtaatc acagcagtca ggcggcgagt gataaaatcc gtcgtcaaga gggaaacaac
     3601 ccagactacc agctaaggtc cctaaatctt acttaagtgg aaaacgatgt gaagttactt
     3661 aaacaaccag gaggttggct tagaagcagc catcctttaa agaaagcgta atagctcact
     3721 ggtctagtga ttttgcgcgg aaaatataac ggggctaaag taagtaccga agctgtagac
     3781 ttgcgcacaa cttagattat ttaagtttag aatatgagaa actaagttat atgtttagtt
     3841 atatttttac tgatttttat agagtaaaga tagaaataaa acttagtaaa atcagtaaaa
     3901 atattcttag actaaagtta agtagtttaa gttgtgtgca agtggtagga gagcgttcta
     3961 tttgcgtcga aggtataccg gtaaggagtg ctggagcgaa tagaagtgag catgcaggca
     4021 tgagtagcga taattaatgt gagaatcatt aacgccgtaa acccaaggtt tcctacgcga
     4081 tgctcgtcat cgtagggtta gtcgggtcct aagtcgagtc cgaaaggggt agacgatggc
     4141 aaattggtta atattccaat accaacatta gtgtgcgatg gaaggacgct tagggctaag
     4201 ggggctagcg gatggaagtg ctagtctaag gtcgtaggag gttatacagg caaatccgta
     4261 taacaatact ccgagaactg aaaggctttt tgaagtcttc ggatggatag aagaacccct
     4321 gatgccgtcg agccaagaaa agtttctaag tttagctaat gttgcccgta ccgtaaaccg
     4381 acacaggtgg gtgggatgag tattctaagg cgcgtggaag aactctcttt aaggaactct
     4441 gcaaaatagc accgtatctt cggtataagg tgtggttcgc ttcgtattag gatttactcc
     4501 gaaagcgaag aaacttacaa caaagagtcc ctcccgactg tttaccaaaa acacagcact
     4561 ctgctaactc gtaagaggat gtatagggtg tgacgcctgc ccggtgctcg aaggttaatt
     4621 gatggggtta gcattagcga agctcttgat cgaagcccga gtaaacggcg gccgtaacta
     4681 taacggtcct aaggtagcga aattccttgt cggttaaata ccgacctgca tgaatggcgt
     4741 aacgagatgg gagctgtctc aaagagggat ccagtgaaat tgtagtggag gtgaaaattc
     4801 ctcctacccg cggcaagacg gaaagacccc gtggaccttt actacagctt gacactgcta
     4861 tttggataag aatgtgcagg ataggtggga ggctttgagt atatgacgcc agttgtatat
     4921 gagccattgt tgagatacca ctctttctta tttgggtagc taaccagctt gagttatcct
     4981 caagtgggac aatgtctggt gggtagtttg actggggcgg tcgcctccca aataataacg
     5041 gaggcttaca aaggttggct cagaacggtt ggaaatcgtt cgtagagtat aaaggtataa
     5101 gccagcttaa ctgcaagaca tacaagtcaa gcagagacga aagtcggtct tagtgatccg
     5161 gtggttctgt gtggaagggc catcgctcaa aggataaaag gtaccccggg gataacaggc
     5221 tgatctcccc caagagctca catcgacggg gaggtttggc acctcgatgt cggctcatcg
     5281 catcctgggg ctggagcagg tcccaagggt atggctgttc gccatttaaa gcggtacgcg
     5341 agctgggttc agaacgtcgt gagacagttc ggtccctatc tgccgtgggc gtaagaagat
     5401 tgaagagatt tgaccctagt acgagaggac cgggttgaac aaaccactgg tgtagctgtt
     5461 gttctgccaa gagcatcgca gcgtagctaa gtttggaaag gataaacgct gaaagcatct
     5521 aagcgtgaag ccaactctaa gatgaatctt ctctaagctc tctagaagac tactagtttg
     5581 ataggctggg tgtgtaatgg atgaaagtcc tttagctgac cagtactaat agagcgtttg
     5641 gcttatcttt aataaagcat cacttccttg ttaaggtttt taagaagact ttgaatatag
     5701 ataatattta gagtttaata gaaatctttc aagtagagtt tgtattagaa cttgctctta
     5761 acattgtttt ttaagtattc taaaataaaa acttatcaaa gagagtaaag atttgattca
     5821 ttgataagat gaaagataag atttaaaaga taaaagtaaa aattaaaaaa caaaaaaaga
     5881 aaaataaaaa agaatagaag aaaagcaaaa aaataaaaca atagaataaa aaataaaagc
     5941 tttattctta agttaaatct ttcaaagaat atttaaataa caatgtccgt gattatacag
     6001 atgtggaaac gccttgctcc atcccgaacc aagaagctaa gcacatcgtg ggtgatgata
     6061 ctacgcctta ctggcagggg gaaagtagct cattgcggac ttgttaattc tactttatct
     6121 tattcttata gatttaaaat cttagttttt atatgtcaat cgttgttttt atattta
//
LOCUS       DBBXRO010000099         5943 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.100, whole genome shotgun sequence.
ACCESSION   DBBXRO010000099 DBBXRO010000000
VERSION     DBBXRO010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5943
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.100"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..238)
                     /locus_tag="ACJFEZ_001428"
     CDS             complement(<1..238)
                     /locus_tag="ACJFEZ_001428"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917534.1"
                     /translation="MLKNILISLILSFLLIACGGEKNKNSSELIRAQSQGLLKNHEAI
                     FVEFKEAIVDFDEMSIDAKINSKNSKILLTKASDS"
     gene            422..775
                     /locus_tag="ACJFEZ_001429"
     CDS             422..775
                     /locus_tag="ACJFEZ_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917535.1"
                     /translation="MKKGILIASALLTGSMLLADSVKLQGTIAEVYDNNKTLLIDSIY
                     GGQMAVRILPNTEIDMDNCGIFGMDKHGKFKDLKVGDFLEVKLYYPGYSSNPTQAPAI
                     PVAREIDIECYKKAY"
     gene            878..2026
                     /locus_tag="ACJFEZ_001430"
     CDS             878..2026
                     /locus_tag="ACJFEZ_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917536.1"
                     /translation="MKKLLIIPIIIFLCFIAQIFYMGHINESFFYNLTQTQNPYYEIK
                     NINFHKGFLNSKADFTIEDKYNLGLISKLDFKFNNNYFSKFIAQGKLSNPFKLLDDKL
                     QNKELAWFKIQSIQNDLNVSIQFQDINLSNEGGNALWENVLTEILLDKEDLKIKAIYS
                     KIGQVDFSQFYAKFYLKNLDHQQKFEKPISFSNLIQFNESVEEFKFDFCEINNHTISS
                     FYNKNIIYFDDDNQTLKMHSQGKANNLNIDLTSQIYQSIDFDQINFDLIYSQKKPDIS
                     DDKLIFKPSNEELNLQIQNITLKKDNQDINIKGNIFLSMQSHKAHIQISSLKSPDEIF
                     TWGQFFGGLNQYFIKNEEGMFIMDLHYDSDTKTQLKINGNEFTDINLN"
     gene            2026..3207
                     /locus_tag="ACJFEZ_001431"
     CDS             2026..3207
                     /locus_tag="ACJFEZ_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HGG0917537.1"
                     /translation="MSLALNFRPKTLDEILGQQELVEVFKKFISMQKLPHSLFFGPAG
                     CGKTTFARVVAKDFGLDFYEFDGGNFKLEDLRKIIENYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRCIVIGASTENPYFVLSSGIRSRSMLFEFKNLGQKDLELLLERVQQ
                     KIAFKIEDNAKEFLLKSFDARAMLNLLEFALVLNEKEITLENLKKLRNGVNSEGVSSK
                     DTHYILASALIKSLRGSDVDAAIYYLARLIDAGESADFIARRLIIFASEDISNADPNA
                     LNLAVSTLTAVKNIGYPEARIILSQCAVYLASAPKSNSSYNAINKALDYVKNNPALEI
                     PNYLNNNHPEKKNYLYPHNFGGWVKQNYLSANLKFYESKGIGEEARLLENLSKLKNIK
                     S"
     gene            3277..4005
                     /gene="dapB"
                     /locus_tag="ACJFEZ_001432"
     CDS             3277..4005
                     /gene="dapB"
                     /locus_tag="ACJFEZ_001432"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HGG0917538.1"
                     /translation="MINIGIYGAKGRMGKQIEECLKSETKAKAAALFDKGDNLEEFFE
                     KSDVIIDFSSQNGTHELLNYARTMPKPLVIGTTGLDEKTLHLMQNASEVMPVFYATNM
                     SLGVAVLNHLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQGVAKARNLDLEK
                     VRISGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEEGEFLELNHTATSRATFAKG
                     AIKIAIWLNAQKPKMYSINDFLGI"
     gene            4007..5344
                     /gene="purF"
                     /locus_tag="ACJFEZ_001433"
     CDS             4007..5344
                     /gene="purF"
                     /locus_tag="ACJFEZ_001433"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HGG0917539.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKTIKT
                     IKAKGEVNQIFNPENLKTLEGEIAIGHNRYSTAGNSSLNDAQPVAATSVLGDIALAHN
                     GNLVNKEKVRSKLIEDGAIFQTNMDTENVVHLIARSKKESLKDRFIESLQKCIGAYCF
                     VLASKDKLYVVRDPYGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMIIF
                     TQGNDKFESIELFKQEPRICAFEYIYFARPDSIIEGKSVYEIRKKMGEALAKKFTHSA
                     DFVVPVPDSGVSAAIGFSQYLKIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     HKVLKDKEIVVVDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNLEEVREYVEADSLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(5348..>5943)
                     /locus_tag="ACJFEZ_001434"
     CDS             complement(5348..>5943)
                     /locus_tag="ACJFEZ_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysostaphin resistance A-like protein"
                     /protein_id="HGG0917540.1"
                     /translation="CLLLFLHFIPGVNNVKILDKVHASEHSSAFTLYFSFDKPLGVFL
                     LFLLMPSLFENLNRIKPKLFQAALLFASPFLLLSIPWYLGVIKMEIGFPSWIVYFLFS
                     NLFLVALVEEAFFRGYLQQRLQGLIGGVGALLVASLAFGAAHYKAGSLMIIFASLAGL
                     IYGMAWRYSKSLWLSVFFHYGLNLTHLFFFTYPSYVK"
BASE COUNT         2268 a          889 c          934 g         1852 t
ORIGIN      
        1 tagagtctga tgcctttgta agtagaattt ttgaattttt agaattgatt tttgcatcaa
       61 tactcatttc atcaaaatca acaatagctt ctttaaattc aacaaaaatt gcttcatgat
      121 tttttagaag tccttgagat tgtgcacgaa ttaactcgct tgaattctta tttttctcac
      181 cgccacacgc gatcaataaa aaagataaaa tcaaactaat caatatattt tttaacatta
      241 atattccttt gaaaaattaa gctcgacatt atttaagata ttctacttac ttttaattaa
      301 aaattcattg atatttttta aaaactcaaa tcaaatatct aaaaaattat attttatcca
      361 atttcacact cacttcactt aaaaatttta taatgtcatc acttttaaaa aaggagacaa
      421 aatgaaaaaa ggtattttaa tcgcatcagc acttttaaca ggctctatgc ttcttgcaga
      481 tagtgtaaaa cttcaaggta ctatagcaga ggtttatgat aataataaaa ctttacttat
      541 agattcaatc tatggcgggc aaatggctgt aaggatattg ccaaatactg aaattgatat
      601 ggataattgt gggatttttg gaatggataa acacggaaaa ttcaaagatt taaaagtagg
      661 agattttctt gaagtaaaac tttactatcc tggatattca tctaatccta ctcaagcacc
      721 tgcgattcct gtggcaagag aaattgatat agagtgttac aaaaaagctt attaatttgc
      781 ttacttttta gtaagcaaat ttaatttctt caaaatttaa acttttttta gcaaggaatt
      841 tgtaaaatag tacttaaatt tgtttaagga aaaaagattg aaaaaactac ttataattcc
      901 tattattatc tttctttgct tcattgcgca aattttttat atgggacata ttaatgaaag
      961 ttttttttat aatcttactc aaacacaaaa tccctattat gagataaaaa atatcaattt
     1021 ccataaaggt tttttaaatt caaaggctga ttttaccata gaagacaagt ataatttagg
     1081 tttaatttca aagcttgatt ttaaatttaa caataattat ttttcaaaat ttatagcaca
     1141 aggaaaactt agcaatccct tcaaactctt agatgataaa ttacaaaata aagaattagc
     1201 ttggtttaag atacaatcta ttcaaaatga tcttaatgta tcaattcaat ttcaagatat
     1261 caatttaagc aatgaaggtg gaaatgcatt atgggaaaat gttttaactg aaattttact
     1321 ggataaagaa gatttaaaaa ttaaagctat ttattcaaaa ataggtcaag ttgatttttc
     1381 tcaattttat gcaaaattct atctaaaaaa cctagaccat caacaaaaat ttgaaaaacc
     1441 tatatcgttt tctaatttaa tacaatttaa cgaaagtgta gaagagttta aatttgattt
     1501 ttgcgaaatc aataatcata caatctcttc attttataat aaaaatatca tttattttga
     1561 tgatgataat caaaccttga aaatgcattc tcaaggcaaa gcaaataatc taaatataga
     1621 tttaacttct caaatttatc aaagtattga ttttgatcaa atcaattttg atctcattta
     1681 tagtcaaaaa aaacctgata tttctgatga taaattgatt tttaaacctt ccaatgaaga
     1741 attaaactta caaatacaaa atatcacttt aaaaaaagat aatcaagata taaacatcaa
     1801 aggaaatatc tttttatcaa tgcaaagtca taaagctcat attcaaattt ctagtttaaa
     1861 atcgcccgat gaaatcttta cttgggggca attttttgga ggtttaaatc aatactttat
     1921 aaaaaatgaa gagggtatgt ttatcatgga tcttcattat gatagtgata ctaaaactca
     1981 gcttaaaatc aatggcaatg aatttacgga tataaattta aactgatgag tttagcttta
     2041 aattttcgtc ccaaaaccct agatgaaatt ctaggccaac aagaacttgt agaagtattt
     2101 aaaaaattta tcagtatgca aaaacttccc catagtttat tttttggacc tgcaggatgt
     2161 ggaaaaacaa cctttgctag agttgtagct aaggattttg ggcttgattt ttatgaattt
     2221 gatggtggaa atttcaaact tgaggattta agaaaaatca tagaaaatta caaaaacagc
     2281 ctttataaac ctcttatttt tatcgatgaa attcatcgct tgagtaaaac tcaacaagaa
     2341 atgcttttaa ttcctatgga aaattatcgc tgcattgtta taggtgcaag tactgaaaat
     2401 ccttattttg ttttaagttc aggcattaga agtcgctcta tgctttttga atttaaaaat
     2461 cttgggcaaa aagatttaga acttttatta gagcgagtac aacaaaaaat agcatttaaa
     2521 atagaagata atgctaaaga atttttacta aaaagcttcg atgctagagc aatgttaaat
     2581 ttacttgaat ttgctttggt tttaaatgaa aaagaaatca ctttagaaaa tttaaaaaaa
     2641 cttcgcaacg gagtaaatag cgagggtgta agctcaaaag atactcatta tattttagca
     2701 agtgctctta ttaaaagttt gcgcggaagc gatgtggatg ctgctattta ttatcttgct
     2761 cgtttaattg atgcaggaga aagtgctgat tttatcgcta ggcgtttgat tatctttgca
     2821 agtgaagata tatccaatgc cgatcctaat gctttaaatt tagccgtttc tactcttacc
     2881 gcagtaaaaa atatcggcta tcctgaagca agaattatac tttctcaatg cgctgtctat
     2941 ctagcaagtg ctccaaaatc aaattcaagc tataatgcta taaacaaggc cttagattat
     3001 gtaaaaaaca atcctgcact tgaaatcccc aattatttaa acaataatca tcctgaaaag
     3061 aaaaattacc tttatccgca caattttggc ggatgggtga agcaaaacta cctgagtgca
     3121 aatttaaaat tctatgaaag caagggcata ggagaagaag cgagattgct tgaaaattta
     3181 agcaaattaa aaaacatcaa gtcctgattt cttataaaaa atttacaaaa taaatgttaa
     3241 aatgcaattt tatctttaag gaaaaaataa gacacaatga taaacatagg aatttatggc
     3301 gctaaagggc gcatgggcaa acagatcgaa gaatgtttaa aaagtgaaac taaagcaaaa
     3361 gcagctgcac tttttgataa gggtgataat ttagaagaat tttttgaaaa aagtgatgtt
     3421 atcatcgact tctcatctca aaatggcact cacgaactct taaattacgc aagaacaatg
     3481 ccaaaacctt tagtaattgg cacaacaggg ctggatgaaa aaaccctgca tttaatgcaa
     3541 aatgcaagcg aagtaatgcc tgttttttat gcgactaata tgtctttagg ggttgcagtt
     3601 ttaaaccatc tggctagcaa agcaagccaa atgttaagaa attttgatat agaaatttta
     3661 gaaatgcacc atcgtcacaa aaaagacgct ccaagtggta ctgctatgac tttagcacaa
     3721 ggtgtagcaa aagctagaaa tttagatctt gaaaaagtaa gaatcagcgg aagagatggt
     3781 atcataggcg aaagaagcaa agatgaaatt gccgtgatga gtctaagagg tggagatatt
     3841 gtaggacgcc acactgtggg cttttatgaa gagggtgaat ttttagaatt aaaccatacc
     3901 gcaacttcaa gagcaacttt tgctaaagga gcgattaaaa tcgctatttg gcttaatgca
     3961 caaaagccaa aaatgtactc aattaatgat tttttaggaa tttaaaatgt gtgcagtagt
     4021 aggagttata aattcaaaaa atgcaagtac ttatgcttac tatgctcttt ttgccatgca
     4081 acaccgagga caagaagcaa gcgggattag tgtaagcaat ggtaaaacta tcaaaactat
     4141 caaagccaaa ggcgaagtaa atcaaatttt taaccctgag aatctaaaaa ccctagaagg
     4201 tgaaatcgcc ataggacaca atcgctattc taccgcggga aattcaagct taaatgatgc
     4261 ccaacccgta gctgcgactt cagtcttagg ggatattgct ttagcacaca atggaaattt
     4321 agtcaacaaa gaaaaagtaa gatcaaaact catcgaagat ggagctatct ttcaaaccaa
     4381 tatggatact gaaaatgtcg ttcatctcat agcaagaagt aaaaaagaaa gcttaaaaga
     4441 tagatttatc gaaagtttgc aaaaatgcat aggggcttat tgttttgttt tagcaagtaa
     4501 agacaagctc tatgttgtaa gagatcctta tggggtgcgt cctttatctt tagggcgctt
     4561 aaaagatgga ggctatatcg tagcaagcga aacttgcgct tttgatctta tagaagcaga
     4621 atttatacgc gatgttaaac ctggagaaat gattattttc actcaaggaa atgataaatt
     4681 tgaaagcata gaacttttta aacaagagcc tagaatttgt gcttttgaat atatttattt
     4741 tgctagacct gatagcatta tagaaggaaa aagcgtgtat gagatacgca aaaaaatggg
     4801 cgaagctttg gcaaagaaat ttactcatag tgctgatttt gtagtgcctg ttccagatag
     4861 tggcgtaagt gctgccatag gcttttcaca atatttaaaa attccacttg aaatggctat
     4921 agttagaaac cattatgtag gtagaacctt tatcgaacct actcaagagc ttagaaattt
     4981 aaaagttaaa ttaaaattaa atcctatgca taaagttcta aaagataaag aaattgtcgt
     5041 agtagatgat agtttagtgc gtgggacaac ttctaaaaaa atcatttccc tacttcgtgc
     5101 cgcaggtgca agtaaaattc acttggccat agcttgccct gaaattaaat ttccagatac
     5161 ttatgggatc gatactccaa cctttgaaga actcattagc gctaataaaa atttagaaga
     5221 agtacgcgaa tatgtggaag cagattcact tagcttttta agtatcgaag aattaactca
     5281 aagcataggg gatgagagaa aatattcttt aattagcttt gatggagatt attttatcaa
     5341 ataatctcta ttttacataa gagggataag taaagaaaaa caaatgtgtt aaatttaaac
     5401 cataatgaaa aaatacacta agccacaaac tcttactata tctccaagcc attccataaa
     5461 tcaaacctgc caaagaagca aagattatca tcaaactacc tgctttataa tgcgccgctc
     5521 caaatgccaa acttgcgact aaaagtgctc ctacaccccc tatcaaacct tgtaatcttt
     5581 gttgtaaata acccctaaaa aatgcttctt caaccaaagc aaccaaaaat aaattagaaa
     5641 ataaaaaata cactatccaa gaaggaaagc ctatttccat tttaattaca cccaaatacc
     5701 aagggataga taaaagtaaa aaaggacttg caaacaataa cgctgcttga aataattttg
     5761 gttttattct atttaaattc tcaaacaaac ttggcataag caaaaagagt aaaaaaacac
     5821 ccaaaggctt atcaaaacta aaatacaaag taaaagcgct actatgctca cttgcatgaa
     5881 ctttatctag aatttttaca ttattaacac ctggaataaa atgcaaaaat aaaagcaagc
     5941 aaa
//
LOCUS       DBBXRO010000100         5869 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.101, whole genome shotgun sequence.
ACCESSION   DBBXRO010000100 DBBXRO010000000
VERSION     DBBXRO010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5869
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.101"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            75..359
                     /locus_tag="ACJFEZ_001435"
     CDS             75..359
                     /locus_tag="ACJFEZ_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HGG0917541.1"
                     /translation="MAVKITDSCIACGSCIDECPVSAIVDDANNPEGEDRYYVYADKC
                     VECVGHNDQPACASACPTDGCIVWSEIASGQPSRDNIGSDMRDGTTPVFA"
     gene            460..873
                     /gene="ndk"
                     /locus_tag="ACJFEZ_001436"
     CDS             460..873
                     /gene="ndk"
                     /locus_tag="ACJFEZ_001436"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HGG0917542.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AEAFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAQPGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKSNEIC"
     gene            873..1232
                     /locus_tag="ACJFEZ_001437"
     CDS             873..1232
                     /locus_tag="ACJFEZ_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917543.1"
                     /translation="MKIAFSRINNTNYPFKLNLENVVFEGNLVKVNPKLVKINATMQG
                     FVYRPCDSCGEELELEIKENLDLFASDGIFKDNTNELSNTIEFFDGHIDLIEVAVSEL
                     EAYLSDYFYCNNCKNKS"
     gene            1256..1402
                     /gene="rpmF"
                     /locus_tag="ACJFEZ_001438"
     CDS             1256..1402
                     /gene="rpmF"
                     /locus_tag="ACJFEZ_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HGG0917544.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPN
                     TKEY"
     gene            1408..2394
                     /gene="plsX"
                     /locus_tag="ACJFEZ_001439"
     CDS             1408..2394
                     /gene="plsX"
                     /locus_tag="ACJFEZ_001439"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HGG0917545.1"
                     /translation="MIDIAIDAMGGDFGEKPIIEGVIEALKERPFNAILVGNPNILRP
                     LIPKNLEQYIQYENANEVFSMNENATDALKRKETTIYKTIELVKNGKAKAAVSAGHSG
                     ASMSLATLRLGRLKGVLRPAIATLMPNTTSKTLFLDVGANTDCKAENLFQFAIMGDAY
                     AKEIMKISKPRLALLSNGEEECKGNELTKEAHQLMKQIPSFVGNAEGRDIFNGEVDVL
                     VCDGFDGNVILKACEGVATAIIHILKNEIKQSLISKIGALLMKPSFKRLKKHIDWQEY
                     GGAPLLGVNGCVIISHGKSDARAIKNAIFQAINFSESNINQIIEKELEKYNA"
     gene            2387..3364
                     /locus_tag="ACJFEZ_001440"
     CDS             2387..3364
                     /locus_tag="ACJFEZ_001440"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HGG0917546.1"
                     /translation="MPKASLKSIASYIPEQILSNHDLEKIIDTTDEWITRRTGIKERR
                     IASKDESTSDLGTKAAIKAIERANLKPQDIDAILVATLSPDYFTMPSTACKIAANLGL
                     NGISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKASSIMDYTDRSICILFG
                     DGAGAGVVSLDENNPIIDVHTASNGNYGDLLMTERSQESKEASSLAMKMKGNEVFKIA
                     VQTLSNDVVEILSKNQILPEQIDLFIPHQANLRIIKAVQERLNLSDEKCVVTVHKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENFS"
     gene            complement(3592..4668)
                     /gene="serC"
                     /locus_tag="ACJFEZ_001441"
     CDS             complement(3592..4668)
                     /gene="serC"
                     /locus_tag="ACJFEZ_001441"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HGG0917547.1"
                     /translation="MRKINFSAGPSTLPLELLEYAKNELCDYQGKGYSIMEISHRSKV
                     FEEVHFGAMQKAKELYGLNDDYEVLFLQGGASLQFAMIPMNLSLGGVCEYANTGVWTQ
                     KAIKEAQILGVNVKVVASSEESKFDHIPQVEFSDNADYAYICSNNTIYGTQFKNYPKT
                     KAPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGISCLFIRKDMLERSQNKNLPS
                     MLKYSIHAQNQSLFNTPPTFAIYMFNLEMKWLLDQGGLDAIDAKNSQKAAMLYECIDS
                     SEGFYKGHADKKDRSLMNVSFNIAKNSELEPIFVKEAEEVGMLGLKGHRILGGIRASI
                     YNAVTLDQVKTLCEFMKEFAKKYN"
     gene            complement(4678..5841)
                     /gene="xseA"
                     /locus_tag="ACJFEZ_001442"
     CDS             complement(4678..5841)
                     /gene="xseA"
                     /locus_tag="ACJFEZ_001442"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HGG0917548.1"
                     /translation="MKVSELNLKAKALLETHLNDIVLSGELSKITMHGSGHWYFDLKD
                     EKSSIACAMFKGANLKVDFQPKVGDFLELVGSVSLYAESGRYQFIVSSMKKAGMGDLE
                     AQFLALKERLQKEGLFNSEYKKTLPQFPKKIGIITSKTSAALQDMLKLINQKEYFLAK
                     IYVFNALTQGSGAAYSLIQALKKADKIGLDVIIIARGGGSREDLFCFNDEGLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLLYSRLDLEQGLDLLEEKLTKLW
                     ESKLEYCENLLSNLHKFFKAKSLETMIEAKEKQLAFLLKQAKIIIESKIQKAELELQK
                     LQNAFFQHENFFKKSKNLISIKKNGKIANLEELKSEDIITLSSQTLQKEAKIL"
BASE COUNT         2012 a          959 c          993 g         1905 t
ORIGIN      
        1 agttttttaa gaatactttg ataaaatgct tagttgaaaa aagtaaattt catattaatc
       61 aaaaaggaga caaaatggct gtaaaaatta cagatagttg tattgcttgt ggttcttgta
      121 ttgatgagtg tccagttagc gcaatcgttg acgatgcaaa caatccagag ggcgaagata
      181 gatattatgt ctatgcggat aaatgtgttg aatgtgtagg acacaatgat caaccagctt
      241 gtgcaagcgc atgcccaact gatggctgta tagtatggag tgaaattgct tcagggcaac
      301 caagtcgtga taatatcggt agcgatatga gagatggaac taccccagtt tttgcataat
      361 tctacaaagg ctagttaaaa agctagcctc tttttaactt tttttaaaca aattcaagta
      421 taattttaag ctttataaaa accaaggagt ataatcaaaa tggaaaaaac cctatcgatt
      481 atcaaacctg atgccgtaaa aaaaggtgtt ataggtaaaa ttttagatcg tttcgaaagt
      541 aatggattaa gaattgctgc tatgaaaaaa gttcaactta gcaaagaaca agctgaagct
      601 ttttatgctg ttcacaaaga aagacctttt tttaaagatt tggttgaatt tatgatcagc
      661 ggccctgttg tggtttctgt tttagaaggc gaaggtgctg ttcttaaaaa tagagattta
      721 atgggagcaa caaacccaaa agaagcacaa cctggcacca ttagagcaga ttttgctgaa
      781 agcattgacg caaacgctgt tcatggaagc gatagcttag aaaatgcaaa aattgaaatt
      841 gaatttttct ttaaatctaa cgaaatttgc taatgaaaat agccttttct aggattaaca
      901 atactaacta tccttttaaa ctcaatcttg aaaatgttgt ttttgaagga aatttagtaa
      961 aagtaaatcc taaacttgtt aaaataaatg ccacaatgca aggttttgtt tatagacctt
     1021 gtgatagctg tggtgaagaa cttgagcttg aaataaaaga aaatttggat ctttttgcaa
     1081 gtgatggtat ttttaaagat aatacgaatg aattaagcaa taccattgaa ttttttgatg
     1141 gtcatattga tttaatagaa gttgcagtta gtgagcttga agcttatttg agtgattatt
     1201 tttattgtaa taattgcaaa aataaaagct aacaaatttt aaaaaaggag ataaaatggc
     1261 agtacctaag agaagagtga gtaaaactcg tgcagcaaaa cgcagaactc actataaagt
     1321 aagtcttcct atgcctataa aagacaaaga tggaagctac aaaatgcctc atcgtgcaaa
     1381 tccaaatact aaggaatact aaaatcaatg attgacattg ctatagatgc aatgggcgga
     1441 gattttggag aaaagcccat tatagaaggc gttatcgagg ctttaaaaga aaggcctttt
     1501 aatgctatct tagtgggaaa tcccaatatt ttaagacctc taatacctaa aaatttagaa
     1561 caatacattc aatatgagaa tgccaatgaa gttttctcta tgaatgaaaa tgcaacagat
     1621 gccctaaaaa gaaaagaaac tacgatttat aaaaccatcg aacttgtcaa aaatggaaaa
     1681 gcaaaagccg ctgtttcagc aggacatagt ggtgcaagta tgtctttagc aactttaaga
     1741 ttgggcagac tcaaaggagt attacggccc gcaattgcaa ccttaatgcc aaatactaca
     1801 agtaaaactt tgtttttaga tgtgggtgca aataccgact gtaaagccga aaatttattt
     1861 caatttgcta taatgggcga tgcttatgca aaagaaatta tgaaaatttc aaaacctcgc
     1921 ctggctttat tgtctaatgg cgaagaagag tgtaaaggca atgaacttac taaagaggct
     1981 catcagctta tgaaacaaat tcctagtttt gttggaaatg ctgaaggtag agatattttt
     2041 aatggtgaag ttgatgtctt agtttgtgat ggatttgatg gcaacgtaat cctaaaagcc
     2101 tgtgaaggcg tagctacagc aattatccac attttaaaaa atgaaatcaa gcaatctttg
     2161 atatcaaaaa taggcgcatt gctaatgaaa ccttcattta aaagacttaa aaaacatatt
     2221 gattggcaag aatatggcgg cgccccactg cttggtgtca acggctgcgt tattataagt
     2281 catggaaaaa gcgatgctag agcaatcaaa aatgctattt ttcaggctat taactttagt
     2341 gaatcaaata tcaatcaaat aatagaaaag gagcttgaga aatacaatgc ctaaagcgag
     2401 tttaaaaagt atagcttctt atatacctga acaaatttta agtaatcacg atcttgaaaa
     2461 gattattgat acaacagatg agtggatcac aagacgcaca ggtataaaag aaagacgcat
     2521 tgcaagcaaa gatgaaagca caagtgattt aggcaccaaa gcagctataa aagctataga
     2581 aagagcgaat ttaaaaccac aagatattga tgcgatacta gtagctacct taagccctga
     2641 ttattttacc atgccttcaa ctgcttgtaa aatcgcagca aatttaggac ttaatggaat
     2701 cagtgccttt gatatttcag cagcctgctc aggttttatc tatcttttag agcaagctaa
     2761 ggctcttgta gaaagtggtt tgaaaaaaaa tgttttaatc ataggagccg aaaaggcaag
     2821 ctctatcatg gattataccg ataggagtat ttgtatactt tttggcgatg gtgcaggtgc
     2881 tggagtagta agtcttgatg agaacaatcc tataatcgat gtacatacag caagcaatgg
     2941 aaattatggt gatttactaa tgacagaacg ctctcaagaa tcaaaagaag cttcaagcct
     3001 agcaatgaaa atgaaaggta atgaagtctt taaaatagcg gtgcaaactt taagcaatga
     3061 tgtcgttgaa attttatcta aaaatcaaat tttgcctgaa caaattgatc tttttatccc
     3121 acaccaagca aatttacgca tcattaaagc tgtgcaagaa agactgaatt taagcgatga
     3181 aaaatgcgtt gtaactgtgc acaaatatgg caatacctca gctgcttcta tccctatggc
     3241 gatgaatgat gcctatgaag agggtcgtct taaaaaaggg aatttgatcc tgcttgatgc
     3301 ttttggcggt ggttttactt ggggttctgc cttacttaaa tttggtggtg agaatttctc
     3361 ctaaaacctt aaatttacat tttaacactg tgtaaaattt accttaaaaa agatttgaac
     3421 caaatctaat taaactttct atatcttaat actagatatt ttattggatt aaatttattt
     3481 tgaaaattta catatttcta tttttacttt tttgggattt tttatttaaa acttgagtaa
     3541 attttctgcc acctttgagt gaattttatg caaagtggca gaaggattag tttagttata
     3601 ttttttagca aattctttca taaattcaca cagggtttta acctgatcta aagtaacagc
     3661 attataaata cttgcgcgaa ttcctcctaa aattctatga cctttaagtc ctagcatacc
     3721 cacttcttca gcttctttta caaatattgg ttcaagttct gaatttttag cgatattaaa
     3781 gcttacattc atcaaggatc tatctttttt atcagcatgt cccttgtaaa atccttcact
     3841 tgaatcaata cactcataaa gcatcgcagc tttttgagaa tttttagcat cgatagcatc
     3901 tagtccacct tgatctaaaa gccatttcat ttcaagatta aacatataaa ttgcaaaagt
     3961 cggaggagta ttaaacaaag attgattttg tgcatgtatg gagtatttta acatacttgg
     4021 caagttttta ttttgagatc tttctagcat atctttgcgt ataaaaagac agctgatgcc
     4081 cgaaattcct gcattttttt gtactccgcc ataaaaaagc gcaatatttg aaaaatcaac
     4141 ttttcttgag aaaaaatcac tcgaagcatc gacgattaaa ggggctttgg ttttaggata
     4201 gtttttaaat tgtgtgccat aaatagtatt atttgagcaa atataggcat aatcggcatt
     4261 atcactaaac tcaacttgag gtatgtgatc aaacttactt tcttcactac tagcaacaac
     4321 cttgacattt acccctaaaa tttgagcttc ttttatagct ttttgagtcc aaactcctgt
     4381 atttgcatac tcacaaaccc cgcctaaaga taaattcata ggtatcatag caaattgcaa
     4441 actcgcacca ccttgcaaaa ataaaacctc atagtcatca tttaaaccat aaagttcttt
     4501 tgctttttgc attgctccaa aatgcacttc ttcaaatact tttgaacggt gagaaatttc
     4561 catgatagaa tagcccttgc cctgataatc acaaagctca tttttggcat attctaaaag
     4621 ctccaaaggt aaagtagatg gacctgcgct aaaattaatt tttctcatta tttttcctta
     4681 tagaattttt gcttcttttt gtaaagtttg agaactcaaa gtgatgatat cttcactttt
     4741 tagctcttct aaatttgcta ttttaccatt ttttttaatg gaaattaggt ttttgctttt
     4801 tttaaaaaaa ttttcatgct gaaaaaaagc attttggagt ttttgcagtt ctaattcagc
     4861 tttttgaatt ttgctttcta ttatgatttt tgcttgctta agcaaaaatg caagctgttt
     4921 ttcttttgcc tctatcatag tttctaaaga ttttgcttta aaaaatttgt gtagattgct
     4981 gagtaaattt tcacaatatt ctaatttact ttcccaaagc tttgtcaatt tttcttccaa
     5041 aaggtcaagt ccttgttcta aatcaagtct agaataaagc aaagtatcga tagcagctga
     5101 tggagtgggt gctctaaaat cagctacaaa atcactgatc acataatcaa tctcatgacc
     5161 aattgccgaa ataataggtg ttttagcttt aaaaatttcc cttgctaagc cctcatcatt
     5221 aaaacaaaaa agatcctctc tgctaccacc ccctctagcg ataatgataa catctaatcc
     5281 tatcttatca gcttttttta aagcttgaat caaagaataa gctgcgccac ttccttgcgt
     5341 aagtgcgtta aaaacataaa ttttagctag aaaatattct ttttgattga taagttttaa
     5401 catatcttgc aaggccgctg aagtctttga agtgatgatt ccgatttttt tagggaattg
     5461 aggcaaggtt tttttatact cactattaaa caatccttct ttttgcaagc gctcttttaa
     5521 tgctagaaat tgagcctcta aatctcccat tcccgctttt ttcatgctac ttacaataaa
     5581 ttgataacgc ccactttcag catacaaact cacacttcca acaagctcta aaaaatcacc
     5641 caccttaggc tgaaaatcaa cttttaaatt tgcaccctta aacatagcac aagctatact
     5701 tgatttttca tcttttagat caaaatacca atgtcctgat ccgtgcatgg tgatttttga
     5761 aagctctccg cttaaaacaa tatcattaag atgtgtttcc aataaagcct tggcttttaa
     5821 atttaattcg cttactttca tgattttcca tatataaagt attacaaaa
//
LOCUS       DBBXRO010000101         5794 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.102, whole genome shotgun sequence.
ACCESSION   DBBXRO010000101 DBBXRO010000000
VERSION     DBBXRO010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5794
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.102"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            25..297
                     /gene="rpsO"
                     /locus_tag="ACJFEZ_001443"
     CDS             25..297
                     /gene="rpsO"
                     /locus_tag="ACJFEZ_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HGG0917549.1"
                     /translation="MALDSAKKAEIVAKFARKAGDTGSTEVQVALLSARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLAYLKRKDYNSYSKLITELNLRDK"
     gene            complement(368..3337)
                     /locus_tag="ACJFEZ_001444"
     CDS             complement(368..3337)
                     /locus_tag="ACJFEZ_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HGG0917550.1"
                     /translation="MLAPDMGVWLYKANLFLFGEFAYYYPFFLFILNYVYYKRNYKLA
                     NFTRRELFGIGFAFFSSLLLFAVFYPNSGYILELAYAIFSAILGHTGSGIFALLLLFF
                     SFILLFPKTTKELFKIEINFNILLKIENALKVLLMRVFGGENEKDDLSKIEPKAPIVT
                     LEKNTAFVQEKIQHENENLNLNPTEELVKYSNINASKNSIITAKENFEKLKNQILDEK
                     VEIDKESIKEAKSFIYENSQQVRNFAQKASRMSIKLDEDFNFISEEEVDMIPERFLKP
                     KKLEDIKQIDTSNKNLDEPSYKRKNIEISIPKQEIKPKIFTKELELRENLMKEAKLEQ
                     EYKAYQNEILENKVQEEIKELEKKDSLEPNLNHIMQGSKYNFGTPLQEVSSAKEEIKT
                     QNAPIPSILEKTNEVEIIDFDESEIEIKKMESINKSIHDFIPIVEELEHPYIEPTPIV
                     KIEELEPLNNQINKQIPIQEKDEITEQDNSFSKEQISQEPSQEITRQKAILAKEIELN
                     KALLREIEQGEMEKPKDFELPPLEFLTNPSHNKQEINESEIDKKIYNLLEKLRRFKIG
                     GDVISTYIGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAKSIRIQAPIPGKDVVGI
                     EVPNDEIQTIYLREILESEVFKNAKSPLTIALGKDIVGNAFVTDLKKLPHLLIAGTTG
                     SGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIPHLLTPVITDPKKAVNA
                     LSNMVAEMERRYRLMAEAKTKNIENYNEKMKELGEEELPFIVVIIDELADLMMTAGKD
                     VEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYKVGQKIDSKVILD
                     AMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDFLKDQQSVEYDESFLKD
                     QQSMGVTSSESMNNGEYDELYEDAKRVILSDGKTSISYLQRKLNIGYNRAANIIDQLT
                     ESGVLSEPNSKGQREIL"
     gene            complement(3448..5700)
                     /gene="flgL"
                     /locus_tag="ACJFEZ_001445"
     CDS             complement(3448..5700)
                     /gene="flgL"
                     /locus_tag="ACJFEZ_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HGG0917551.1"
                     /translation="MRITNKLNFTNSISTSMGAQSSLYQISQQLSSGIKIQNSYEDAS
                     VYIDNTRLEYELKTLEQVKQATNSAKEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADTKDE
                     LKNIIEAANQEGISMNEVTNRVMQAATAAPSNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTT
                     ISQLSLLNYM"
BASE COUNT         1743 a          999 c          849 g         2203 t
ORIGIN      
        1 aaatcaccaa tcaggaggtc tatcatggct ttggattcgg ctaaaaaagc agaaattgtt
       61 gcgaaattcg ctagaaaagc gggcgatact ggctcgacag aagttcaagt agcactttta
      121 agtgcaagaa ttgcagaact tacagaacat ttaaaaatct acaaaaaaga tttttcttca
      181 agattaggac ttttaaaact tgtaggtcaa agaaaaagac ttttagctta tctaaaaaga
      241 aaagattaca attcttatag taaattaatt acagaattaa atctcagaga taaataaaat
      301 ttcacaagcc ctttttttca gggcttgatc ttcaaatcat tctttaatct tttaaattac
      361 caaagattta taaaatttct ctttgtcctt tagagtttgg ttcgctgagc actccgcttt
      421 ctgtaagctg atcaataata ttggctgcgc ggttgtatcc gatattaagc tttctttgca
      481 gataagaaat acttgttttt ccatcgctta gtataacgcg tttggcatct tcataaagtt
      541 catcatattc gccattattc atactttcac tacttgttac gcccatactt tgttgatctt
      601 ttaaaaagct ttcatcgtat tctacgcttt gttgatcttt taaaaagtct acgatttttt
      661 ctatctcaaa ttcgcttgca aatggagcat gtaaacgaac gatagagctt gttccaggag
      721 gagtaaacaa acaatcccct ctacctaaca aactttcagc ccccatagca tctaagataa
      781 ctttagagtc aattttttgc cctactttat aagaaattct acttggtaaa ttggccttga
      841 taagccctgt tacaacatct accgatgggc gttgtgtcgc aacgatcaaa tgaattccac
      901 ttgctcttgc catttgcgct aaacgaccta tataaaattc cacatcctta cctgcagtca
      961 tcatcaaatc agccagttca tcgataatca caacaataaa aggaagttct tcttccccta
     1021 gctctttcat cttttcatta taattttcta tgtttttagt ttttgcttca gccattaaac
     1081 gatagcgtct ttccatttct gcaaccatat ttgaaagagc attaactgct ttttttggat
     1141 cggtgattac tggtgttaaa agatgaggga tgtcattata aatactaaat tcaagcattt
     1201 ttggatctat catcattaag cgtagagttt ttggagagtt gcgatataaa aggcttaaaa
     1261 gcatagaatt tatacccacg ctctttccac ttcctgtggt tcctgcaatg agtaaatgtg
     1321 gaagtttctt aagatcagtt acaaaagcat ttcctactat atctttaccc aaagctatgg
     1381 ttaaaggact ttttgcgttt ttaaagactt cgctttctaa aatttctctt aaataaatag
     1441 tttgaatttc atcatttggc acttctatac ccactacatc ttttccagga ataggcgctt
     1501 ggatacggat tgactttgcc attaaagcca tggttaaatc atcttgcaaa tttaaaatac
     1561 gactgacttt cacatctgca ctcggacgaa attcaaaagt agttacaaca ggtcctatgt
     1621 aagtgctgat aacatcgccc cctattttaa aacgacgcaa tttttcaagt agattataga
     1681 tttttttatc aatttcactt tcattaatct cttgcttgtt gtgactaggg tttgttagaa
     1741 actcaagcgg tggaagctca aaatctttag gtttttccat ttcgccctgc tctatttccc
     1801 taagtaaagc tttgttaagc tcgatttctt tagctaaaat tgctttttgc ctagtgattt
     1861 cttggcttgg ttcttgtgaa atttgctcct tgctaaagct attgtcttgc tctgtgattt
     1921 catctttctc ttgaattggg atttgtttat ttatttgatt atttaaaggc tctagctctt
     1981 caatttttac aataggagta ggctctatat aaggatgttc caattcttca actatgggta
     2041 taaaatcatg gatgctttta tttatgcttt ccattttttt gatttcaatt tcactttcat
     2101 caaagtctat aatttcaacc tcatttgtct tttctaagat agaaggaatt ggtgcatttt
     2161 gtgtttttat ttcttctttt gcgcttgata cttcttgcaa aggtgtacca aaattgtatt
     2221 tacttccttg catgatatga tttaaattgg gctctaaact atcctttttt tctaattctt
     2281 taatttcttc ttgaacttta ttttctaaaa tttcattttg ataagctttg tattcttgtt
     2341 ctaattttgc ctctttcatt aaattttctc taagctctaa ttctttggta aaaatttttg
     2401 gttttatttc ttgcttaggt atagaaattt caatattttt tcttttatag cttggctcat
     2461 ctaaattttt attgcttgtg tcaatttgtt taatatcctc aagcttttta ggttttaaaa
     2521 atcgttctgg gatcatatct acctcttctt ctgaaataaa attaaaatct tcatcaagtt
     2581 ttatactcat tctactcgct ttttgggcaa aatttcttac ttgttgcgag ttttcataaa
     2641 tgaaactttt agcttctttt atgctttctt tatctatctc tactttttcg tctaaaattt
     2701 ggtttttgag tttttcaaag ttctcttttg cggtgattat ggaatttttg cttgcgttta
     2761 tattgctata tttaacaagc tcttctgttg gatttaagtt taaattttcg ttctcatgtt
     2821 gaattttttc ttgaacgaaa gctgtattct tttctaaagt aacaataggt gctttaggct
     2881 ctatcttgct taaatcatct ttttcatttt ctccaccaaa aactctcatt aataatactt
     2941 ttaaagcatt ttctattttg agtaaaatat taaaattgat ttcaatttta aaaagctctt
     3001 ttgtagtttt tggaaacaat aaaataaaag aaaaaaacaa aagtaaaaga gcgaaaattc
     3061 cgctcccagt atgccccaaa atagcagaaa aaatcgcata agcaagctct agtatatagc
     3121 ctgaattagg ataaaaaact gcaaataaaa gcaaactcga gaaaaaggca aatcctatac
     3181 caaaaagctc tcttcttgta aaattagcta atttgtaatt tcttttataa taaacataat
     3241 ttaaaataaa taagaaaaaa ggataataat acgcaaattc tccaaacaaa aacaaatttg
     3301 ccttataaag ccaaactccc atatctggag ctagcataca aagacacaga taaaagatac
     3361 caaaagtaga acttgtaaag atggcttctt ttttgatgat ttttccttga aaataatttt
     3421 ttaagaagcc attatagcat agttttttta catataattt aataagctaa gttgagaaat
     3481 tgttgtacta gctttaagag aagcttgata agcaagctgt gtttgcatta aattcatcat
     3541 cgcctcacca taatctacat caatcacatt tgattttata ctttggacat taacgcttaa
     3601 aaaggatgtg cgtgtattaa caccttcgat agtattatga tatgctccca tagttgtatt
     3661 aagcttgcta acatgatctg ctaaatgatc aagtctttct aaagctcctt gcatacctgt
     3721 atttctaggg ttttcacttt cggagtctgc tctcatattg ccttttaaaa cagcatcaat
     3781 cattgaatct aaatctttaa taatatccac atttggctca tctatagtta aagaattatt
     3841 cgcgctaaaa ctaaaatttg gaccattttg tacagtagaa gttgtggtaa aaggaggtgc
     3901 tggaaattgg ccactttgag aatcactaag agaaatttct atattggttc ctgatgaaag
     3961 tttatcagta acactaatac gacctttata atccatactt acatcaacag tagcttgtga
     4021 atctttcatg agttgttgta tttgggtata atctgcatta ttaatttgac cattattggc
     4081 ttgtatggtt gttgtaggaa ttttatctgc agcaaacata cctataatat cattaatttg
     4141 accataagta atatcatttg atcctgtaac aaccccacta tttccagttg caggattagt
     4201 atgcataata ggaaagctta tggtttgacc tggattatta ggatcaggat agcttacagt
     4261 tgaagtttgt aaatttatag taacatcgta agaatttcca cctttggaat tgacttttaa
     4321 atttaaagta gtaccattta ggctatctcc tgccattacc tcgctaagtt tggttgaatc
     4381 agtggcataa gcattgcttc ctttgataac ttgagaaaca ttaccataaa cagtattgcc
     4441 atttttttca aaatacacat tatcgtaatc agctccatta gcagcatttc catctgtatc
     4501 tgtcatttta cttttgataa aatcagtttg ttttaaatca atttcaaagt tttgtccgtt
     4561 aatttgaatg gttacaggat tatttaaatt tgtaatatct ccattactag gagcagccgt
     4621 agcagcttgc ataaccctat ttgtaacttc attcattgaa ataccctctt gattagcagc
     4681 ttcaataata tttttaagtt catctttggt atcagcttgt ggtgtgaaag ctacagcatg
     4741 aaaatcgagt ttattattac cttgctttag atctgtaatt tgaatttgac cactatcatt
     4801 catacttact tctactactt tattatttgg agtattacca taaagagctc caatattttc
     4861 cattacatct tctaaagtat cttcgggttt tacaagtaca gcacttttaa aacttgttcc
     4921 atcgggtctt gtaccttgaa cataaagagt tgttggagga aaatctagtt tgctatcatc
     4981 atactcaaaa tctttgtcag catctaagct attatctttt acataacctt gtccgataag
     5041 ttgttgccat ttagaatctc ctgtgagata tttagtttta tcagggtctt tatttaaatc
     5101 ccaacgatta tctgtaaaac taacattagt gcttatttgt tttttatagt ctccatctgc
     5161 tttaaaaaat aaatcccaac ctggtatatt gtatgggctt tcagttccag ctccagttac
     5221 tacattaata ttatttttat ctccataata atttccatta gaatcaaaag gtttgtttgc
     5281 aacttgagaa cccgcaaaaa gatattgtcc attaacgcta gtattagcaa gctgaactat
     5341 gctttcttta atgcgttcta attctttggc tatagcctct cttgaagttt gagaattact
     5401 atcgcttgct gcttgagtaa cctttacttt aaaatcctca agaagcttaa ccatatcttg
     5461 taaagctttc atgctatttt gcgtcatttc tttagctgag tttgtagctt gtttaacttg
     5521 ctctaaagtt ttgagttcat attcaaggcg agtattatct atataaacac ttgcatcttc
     5581 ataagaattt tggattttaa tccctgatga aagttgctgc gaaatctgat acaaagagct
     5641 ttgagcgccc atagaagtgc ttatagaatt tgtaaagttg agtttatttg taattctcat
     5701 attcatcctt ggagttttga tttaaataaa tcttttcaaa cattgctttg taaatacaag
     5761 caataattgt tccaatttta tttttacaat atcg
//
LOCUS       DBBXRO010000102         5778 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.103, whole genome shotgun sequence.
ACCESSION   DBBXRO010000102 DBBXRO010000000
VERSION     DBBXRO010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5778
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.103"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(4..1344)
                     /locus_tag="ACJFEZ_001446"
     CDS             complement(4..1344)
                     /locus_tag="ACJFEZ_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HGG0917552.1"
                     /translation="MLYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKNTPVWVNDQKLDPIYAAMLDGIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVSKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASGINEFLSNGSNSKVLHIANAIKNGIIVAHF
                     AKNHMSGPLSIFEGRDNIFKCFGIEEECDKTELNKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLESYENLKREEVLEFAKKIRYEKRKSQGFPKYFPGHLEASLQDGRTIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF"
     gene            complement(1353..2720)
                     /gene="purB"
                     /locus_tag="ACJFEZ_001447"
     CDS             complement(1353..2720)
                     /gene="purB"
                     /locus_tag="ACJFEZ_001447"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0917553.1"
                     /translation="MTGISVFDHKLLADSWSTQDMRAVFCEENRVQKWLDVEAALAKA
                     QAKLNIIPQEAADEIAKKAYYKFMDMDFIFNEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALVKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQSARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLEKIKN
                     SAILK"
     gene            complement(2730..3893)
                     /locus_tag="ACJFEZ_001448"
     CDS             complement(2730..3893)
                     /locus_tag="ACJFEZ_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HGG0917554.1"
                     /translation="MNSKTKLIHCGRGDQNVEVRSVNPTLMRASTILFKDHATWQKYR
                     ELRKTDRVLSYGARGTTTNFELEKLICSLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYGPVRTICELFLEKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYE
                     IIDLPKLCKIAHSHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGV
                     VVINEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQTR
                     KEIKTIFYPKLKTHPNHEIFMRDHKGANGMVTIEFAEGYSKEDAIKFVDELEYFSIGA
                     SWGGYESLATVTTPPRTATDWSKRGPFVRFHIGLEDTKDLIADLAKAFDSIKK"
     gene            complement(3905..5344)
                     /gene="dcuC"
                     /locus_tag="ACJFEZ_001449"
     CDS             complement(3905..5344)
                     /gene="dcuC"
                     /locus_tag="ACJFEZ_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HGG0917555.1"
                     /translation="MLGIVFSLFSVFLLVFMLYKKINAHMALLLSGLLLLSLAAIFGL
                     SPHIVAKGSLNLGFFDIFQVFNQTMSNTLAGLGLTLMTIAGFSAYMDHVGASYALFKV
                     FEKPLKAVKSPYILLIVAYFIVQFLVLFIPSHAGLALLLMVTMYPILVRSGVSKLSAL
                     SVIGICQYIDHGPGSGNVIMASKVAEVDPAIYFVHYQLPTTLPIIIAVGIAIYLCNKF
                     FDKKDNFVFNAQEIEKELNENEGKEKELKKPPRIYAILPIIPLVLILGFSSVLDSILV
                     LMGISSAEEVKAAASTAIEMNVPVAMVISTFVAIIFEIIRYKSIVETLNSIMIFFKGM
                     GHLFVITVSLIVCGQVFASGLLSVGFVDTLIEFCKNAGFGVLAIIIAVSILLAVCAFL
                     MGSGNAAFFSFAPLIPNIAKHFGVETITMIAPIQIMTGFGRCVSPIAPAILAISAIAK
                     VSPFAVVKRTAIPMLVAAIVNIIMTYIYL"
     gene            complement(5348..5710)
                     /locus_tag="ACJFEZ_001450"
     CDS             complement(5348..5710)
                     /locus_tag="ACJFEZ_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HGG0917556.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDIPKGAKVEIEIIAQKG"
BASE COUNT         1886 a         1047 c          871 g         1974 t
ORIGIN      
        1 tatttaaaaa gaaaagtggt ttaaattttc tagattgatg atttgatcta gaattttgtt
       61 agctttagca ttatcaaggt aaatttgtgc attggctaaa aatttagctt ttaattcttc
      121 aaaacttaat ggattatcaa aattaccttt atttataaaa acatcttttt ggattgtgcg
      181 tccatcttgc aaactggctt ctaaatgccc tggaaaatac tttggaaagc cttgagattt
      241 tcttttttcg tacctgattt ttttagcaaa ttctagtact tcttcacgct ttaaattttc
      301 ataagattca agagtgattt taccatcaaa gaatcctaga gccattaaaa aaggcatgga
      361 aaatttagct tcataagcac tatttggagt gtattttgct tctaaaggat cgcagataaa
      421 agaaatagga acttcatcta caaaacaatg aatactttta atttcatcag cttttaaacc
      481 atcatttttt aaagcaatag cacaatcaat aagcccatga gcaaaatgac aacttggata
      541 aggcttgatt gaaacttgca tagtttgcca aatttctcct aaggctttgt taagttctgt
      601 tttatcgcat tcttcttcta tgccaaaaca tttaaagata ttatccctac cttcaaaaat
      661 actcaaaggt ccactcatat ggtttttagc aaaatgagct actataatac cgtttttaat
      721 agcattggca atatgcaaaa cttttgaatt agatccattg gataaaaact cattaatccc
      781 acttgcaaaa cttcctgcaa gtcctaaagc attgatgatt tgttctttgt taagatctag
      841 caagattgca cttgcactta cgcttccaaa aattcctgca atagcagtgg tatgaaaacc
      901 acgcttatga aaagtacctt tgcttgcaat gcctactcta gctgcaattt cccagcctac
      961 tataaaagct ttgatgattt ttttcgcatc tttgctaaca tgaaaaccat aacttaaaca
     1021 aagtggagtt aaaattgcac ttgcatgcaa aatcgcttct gtatgtgtat catcaaaatc
     1081 aagtgcatga gaagcaatgc catctagcat ggctgcgtat ataggatcta atttttgatc
     1141 atttacccat acaggggtat ttttttctgt gcttaaattt tcaaaagctt taaaagcatt
     1201 taaaacacat tcttctttgc ttgctgctat agctgttcca aggctatcaa gcataagttc
     1261 tttagctctt tgaacaactg tattagggat attttcatat ttaagattga aaataaaatc
     1321 cgctaaaatt tcgctatata acatcgtttt tcctatttta aaatagcact atttttgatt
     1381 ttttccaaaa attcatctac aagttttggt gcatatccta cataggttgt tgcatcaagc
     1441 aaagcatcga tttctttttc tttcaatacc ttagatactc ttttatctgc aagtaaaact
     1501 tctttaaaag ttttttgttt ttcgatacct agcatagcat tttcataaac aatctcatgg
     1561 gcgtgttgtt ttccataatg atcgcttaat gcaaacataa cacgctctgc taaaacaaaa
     1621 ccattaagag tatttaaatt tttaagcatt ttgtcttttt ttacttctaa atcactaaga
     1681 gcgaatttca tatttgctaa aaccacagaa agcattaaaa acatttcagg taaaagcttc
     1741 cattccattt tccaaacttg accatctctt tcatgttcat gtctttcaat atcgcttaaa
     1801 atggctaaat ttgccttaaa ggcattgctt actgtaactg cattttcgct tactgcagga
     1861 tttcttttgt gtggcatagt gcttgatcct acttgtcctt tgccaaaagg ttcagcaact
     1921 tcatcaattt cattatgtga aaggattaaa atttcatgag cgattttgtt aaaggttgcg
     1981 ttgatattgc ctagtacaaa accaagttct ataaagcgat cacgtgcgct ctgccaagaa
     2041 atattaggca catcaagtcc taaattttct aaagtgagtt tttctacttc attgcactca
     2101 tcacttaaac ttgctttagt tcctacagcg cctactatac tgcctacata aagtcttttt
     2161 tcaagttcaa gtattctttc aaaatgacgc tcaagttcgc ttaaccaaat agccacttta
     2221 tgtccaaaag taataggcaa agcctgaagt gctaaagttc ttcccatcat agcagtattt
     2281 ttgtgtgttt tagcaagttt tactaaagct tttgcaatgg cttttaattc gctttttaca
     2341 agagtcatag cttctttaaa ttgcaaaaca agtcctgtgt caatgatatc ttgagtggtt
     2401 accccaaaat gtacatattc gcctagatta ttatcgcaag ctttttctaa tcccctaaca
     2461 gtaggaacta aaggatgttt ggttttttta aattcattaa aaataaaatc catatccata
     2521 aatttataat aagctttttt tgcaatttca tctgctgctt cttgagggat gatattaagt
     2581 tttgcttgtg cttttgctaa tgctgcttca acatcaagcc atttttgtac gcgattttct
     2641 tcacaaaaaa cagcacgcat atcttgcgtg ctccatgaat ctgctaataa tttatgatca
     2701 aatacgctaa ttccagtcat tttatttcct tattttttaa tactatcaaa agccttagct
     2761 aaatcagcaa tcaagtcttt agtatcttca agtcctatat gaaatcttac aaatggacct
     2821 cttttgctcc agtctgttgc agttcttggt ggagtagtta cagttgctaa actttcatag
     2881 ccaccccagc tagcacctat agaaaaatat tctaactcat ctacaaattt aatagcatct
     2941 tctttactat aaccctctgc aaattcgata gtaaccatac cgttagcacc tttatgatcg
     3001 cgcataaaaa tttcatggtt tggatgggtt ttgagttttg gatagaaaat agttttaatt
     3061 tcttttcttg tttgtaaaaa ctctacgatt tcatctgcac ttttttcatg agctttcatt
     3121 cttacatcta aagttctcat accacgaaga actaaataag catcatcagg gcttgttgta
     3181 aagcctaaag cttcagggag tttgtcaaaa tttttccatt ctttttcatt gataaccact
     3241 acacccatgg taacatcaga gtgaccgcta agatattttg tcgcagctat aaccgaaata
     3301 tctacgccta gctcaagtgg atttaggaag tatccgcttg aataagtatt atcaatagct
     3361 acaggaatat tatgagagtg tgcaattttg caaagctttg gtagatctat aatctcatat
     3421 aaaattgatc ccggcgactc acataaaata agcttagtat taggcttgat tttctcctcc
     3481 acatcacttg catcagcttt taagaaatca atctcaacgc ccattttttc taaaaataat
     3541 tcacaaattg ttcttacagg cccatagatt gcatcagtaa ttaaaaaatg cgcatccttg
     3601 cttgcatagt ttaaaagtac catagcaagt gctgcaagtc ctgttgggaa aagttgagct
     3661 ctgtagccgc cttctaagct gcagataagt ttttcaagtt cgaagttagt tgtcgttcct
     3721 ctagcaccat agcttaatac acgatcagtt tttcttaatt ctctatattt ttgccaagtg
     3781 gcatgatctt taaaaagtat ggttgatgca cgcataagtg taggattgac tgatcttact
     3841 tcaacatttt gatcacctct accgcaatga ataagtttgg tttttgagtt cattttgtct
     3901 ccttttaaag ataaatataa gtcataatga tatttacaat agccgctaca agcataggaa
     3961 tagctgttct tttaactacg gcaaaaggac tgacttttgc aatagctgaa atggctaaaa
     4021 tagcaggtgc tatagggctc acacatcttc caaagcctgt catgatttga attggtgcta
     4081 tcatggtgat agtttcaact ccaaagtgtt ttgctatatt tgggataagt ggagcaaagc
     4141 taaaaaatgc tgcatttcct gaacccatta agaaagcaca aactgcaagc aagattgaaa
     4201 cggcgataat aatagccaaa actccaaatc ctgcattttt gcaaaattct attaaagtat
     4261 ctacaaaacc tacagataaa agaccacttg caaatacttg accgcaaacg atgagtgaaa
     4321 ctgtgataac aaataaatgt cccattcctt taaagaaaat cataatagaa ttaagagttt
     4381 ctactatact tttatagcgt attatttcaa aaataatagc cacaaaagtt gaaatcacca
     4441 ttgctactgg aacattcatt tcaatggcag tgctagcagc tgctttaact tcttcagcac
     4501 tacttattcc cattaaaacc aagatgctat caagcacgga actaaatcct aggattaaaa
     4561 ccaaaggaat tataggtaaa atcgcataaa ttctaggagg ctttttaagt tctttttctt
     4621 taccttcatt ttcatttagt tctttttcaa tttcttgtgc attgaagaca aaattatctt
     4681 ttttgtcaaa aaatttattg caaagatata tcgcaatacc tacagctata atgataggca
     4741 aggttgtagg gagttgataa tgaacaaaat aaattgcagg atcaacttcg gctacttttg
     4801 atgccatgat cacatttcca cttccaggtc catgatcgat atattgacat ataccaatta
     4861 cacttagggc tgaaagtttt gaaacaccag agcgtacaag tataggatac atagtaacca
     4921 taagtaaaag tgccaagcct gcgtgagaag ggatgaaaag aactaaaaat tgcacgataa
     4981 aataagcaac tatgagtaaa atataaggag attttacggc ttttaaaggt ttttcaaaaa
     5041 ctttaaaaag tgcataagaa gcccctacat gatccatata agcagaaaaa cctgctatag
     5101 tcataagtgt aagtccaagc cctgctaatg tatttgacat ggtttgattg aaaacttgaa
     5161 aaatatcaaa aaaacctaaa tttaaagaac ctttagcgac aatgtgtgga gaaagtccaa
     5221 aaatagcagc taaggaaagt aaaagtaaac cacttaaaag caaagccata tgagcattga
     5281 tttttttata aagcataaaa acaagtaaaa aaacactaaa taaagaaaaa acaataccta
     5341 gcatgtttta tcctttttga gcgatgatct ctatctctac tttagctcct tttggtatat
     5401 cttttactgc aaaagcactt cttgctggat aaggagcttt aaaaaattca gcataaattt
     5461 cattaaatgc tacaaaatca ttaatatcag ctaaaaagca agtggtttta atcactttat
     5521 cataactgat accattttct tctaagatag caccgatatt ttttaaagat tgtttggttt
     5581 gttctttgat atcagagctt tctatttctc ctgaagcagg gttgatagga agttgtcccg
     5641 agataaaaag caaaccgttt gcttctctat aagctgagta agggccgata gcctttggat
     5701 aatttgacat tttctctcct tttttattaa tgtaaattaa ataaacgtat tttatcacga
     5761 taataataat ttgtcaat
//
LOCUS       DBBXRO010000103         5770 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.104, whole genome shotgun sequence.
ACCESSION   DBBXRO010000103 DBBXRO010000000
VERSION     DBBXRO010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5770
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.104"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..172
                     /locus_tag="ACJFEZ_001451"
     CDS             <1..172
                     /locus_tag="ACJFEZ_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917557.1"
                     /translation="VLRGAFAYRGKMIADVLKLHIKDETHFITAYIKAYYEWLLYFIE
                     KLEQKYKSLSKV"
     gene            269..1993
                     /locus_tag="ACJFEZ_001452"
     CDS             269..1993
                     /locus_tag="ACJFEZ_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HGG0917558.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     DEINKNADKTGVRATFTVETRGMAAVRAGTTSDTFAINGVTIGKVAYEDGDANGALVS
                     AINSVKDTTGVEASIDANGQLLLSSREGRGIKIEGSIGGGAFINKDMMENYGRLSLVK
                     NDGKDISISGTNLSSAGFGANNFISQASVSLRESKGQIDANIADAMGFGSVNKGVMLA
                     GASSVSAYMSAAGSGFSAGSGYSVGSGKGYSTVLTTTNPITISAASQLSKVYNVSAGS
                     GFSSGSTLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSV
                     QNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQ
                     QNVLRLLQ"
     gene            2141..3865
                     /locus_tag="ACJFEZ_001453"
     CDS             2141..3865
                     /locus_tag="ACJFEZ_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin A"
                     /protein_id="HGG0917559.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     EEINKSADQTGVRATFTVETRGMAAVRAGTTSDTFAINGVTIGQVAYEDGDANGALVS
                     AINSVKDTTGVEASIDANGQLLLTSREGRGIKIEGSIGGGAFINKDMMENYGRLSLVK
                     NDGKDILISGTNLSSAGFGANNFISQASVSLRESKGRFDANIADAMGFGSVNKGVMLA
                     GASSVSAYMSAAGSGFSAGSGYSVGSGKGYSTVLTTTNPITISAASQLSKVYNVSAGS
                     GFSSGSTLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETATTNLDQIRADIGSV
                     QNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQ
                     QNVLKLLQ"
     gene            complement(3896..>5770)
                     /locus_tag="ACJFEZ_001454"
     CDS             complement(3896..>5770)
                     /locus_tag="ACJFEZ_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0917560.1"
                     /translation="NNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNLDINI
                     IKKRNLKKMYQDPIKELEKNLEYFKDFARYPVLFFYGFGNGILYKILLQNQTLKRIII
                     FEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLHI
                     ANDFYEHYKEDILKLNKLNMQTIKNHNLMHGNDPKDALQGIEQFVYNLPQMITHPSYK
                     ELLSKRKGVSDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYV
                     CMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLEKNQRKYILIIKGQPFAR
                     CLGLDDYGYISGGMSVSHMAYELAENLGHKNIILIGQDLAYAKDGQTHSQGFIHANLH
                     NGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTQGGARIES
                     AIEKPFKELCEDLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKEC
                     KKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILTP
                     LYLKDIKDDSDKQNKLFAWIYAHESLMENIIELLEAQDKRLKIAILPLLDFLEKKKAL
                     "
BASE COUNT         1896 a          893 c         1048 g         1933 t
ORIGIN      
        1 agttttaaga ggagcttttg cttatcgtgg aaaaatgatt gctgatgtat tgaaacttca
       61 tataaaagat gaaacacatt ttatcacagc ctatatcaaa gcttactatg aatggttgct
      121 ttattttata gaaaaattag aacaaaaata caagtctttg tcaaaagtat gaaattttat
      181 tactaaagta taaaatattt ttttgattgc acgatatagc atttaacaag ttcatggatg
      241 agcttgaatt tttttaaaag gatttaaaat gggatttcgt attaacacca atgttgcagc
      301 tttaaatgca aaagcaaacg ctgatttaaa tagtaaaagt ttagatgctt ctttaagcag
      361 acttagttca ggtcttagaa tcaactccgc agcagatgat gcttcaggga tggcgatagc
      421 agacagttta agatctcaag ctaatacttt aggtcaagct atatctaatg gtaacgatgc
      481 tttaggtatc ttacaaactg ctgataaggc tatggatgag caacttaaaa tcttagatac
      541 aatcaaaact aaggcaactc aagcagctca agatggacaa agtctaaaaa caagaaccat
      601 gcttcaagca gatatcaacc gtttaatgga agaacttgac aatatcgcaa atactacctc
      661 atttaacggt aagcaacttt taagtggaaa ttttatcaat caagaatttc aaatcggtgc
      721 aagttcaaat caaactgtaa aagctaccat aggagcaact caatcttcta agataggttt
      781 aacacgcttt gaaacaggag gaagaatttc atctagtggc gaagtgcaat ttactcttaa
      841 aaactacaac ggtatagatg attttcagtt tcaaaaagtt gtgatttcaa cttcagttgg
      901 aacaggactt ggagccttag cagatgagat caataaaaat gctgataaaa caggtgttag
      961 agctactttt acggtagaaa ctagaggtat ggctgcagtt agggctggaa ctacttcaga
     1021 tacttttgct atcaatgggg taactatagg taaagtagcc tatgaagatg gtgatgctaa
     1081 tggagcttta gtttctgcaa tcaattcggt taaagatact accggagttg aagcttcaat
     1141 cgatgctaat ggacaacttt tgcttagctc aagagaagga agaggaatta aaatcgaagg
     1201 aagcatcggt ggtggagctt ttatcaataa agacatgatg gaaaattatg gtcgcttgtc
     1261 tttagttaaa aatgatggta aggatatttc aatcagcggt accaatcttt cttctgcagg
     1321 ctttggagcg aataatttta tctctcaggc ttctgtttct ttaagagagt caaaaggaca
     1381 aattgatgct aatatcgctg atgctatggg atttggttct gtaaataaag gagttatgtt
     1441 agctggagct tcttctgtta gcgcttatat gagtgctgca ggaagtggat tttcggcagg
     1501 ttcaggttat tctgtaggta gtggtaaggg ttattctact gtgcttacta ctactaatcc
     1561 aataactatt tcagctgctt cgcaactttc taaggtatat aatgtttctg caggctcagg
     1621 tttttcaagt ggttcaacac tttctcagtt tgcaactatg aaaacaactg cttttggagt
     1681 aaaagatgaa acagcaggtg ttaccacact taagggtgct atggcggtga tggatatagc
     1741 tgaaacagct ataacaaatc ttgatcaaat cagagcagac attggttcag tgcaaaatca
     1801 agttacatca actataaaca acatcactgt tactcaagta aacgttaaag cagcagaatc
     1861 gcaaatccgt gatgtagact ttgcagccga gagtgcaaac tactctaaag caaatatctt
     1921 agctcaaagc ggctcttatg ccatggcaca ggctaattct gttcaacaaa atgttttaag
     1981 attactacag tagtttaaaa agctgtaata tatacaaatc caagcctagt ttttaaaact
     2041 aggctttttt tattttaaac tctagaattt ttaattaaac taaaacttgg aacacttctt
     2101 gctttaatct tttcgatgca atattttgaa aggatttaaa atgggtttta ggataaacac
     2161 caacatcggt gcattaaacg cacatgcaaa ttcagttgtt aatgctagag agctggataa
     2221 gtctttaagc agacttagtt caggtcttag aatcaactcc gcagcagatg atgcttcagg
     2281 gatggctata gcagattctt tgcgttcaca agcagctact ttaggtcaag ctataaacaa
     2341 tggtaatgat gctataggta ttttacaaac tgctgataag gctatggatg agcaacttaa
     2401 aatcttagat acaatcaaaa ctaaggcaac tcaagcagct caagatggac aaagtctaaa
     2461 aacaagaacc atgcttcaag cagatatcaa ccgtttaatg gaagaacttg acaatatcgc
     2521 aaatactacc tcatttaacg gtaaacaact tttaagtgga aattttatca atcaagaatt
     2581 tcaaatcggt gcgagttcaa atcaaactat aaaagctacc ataggagcaa cccagtcttc
     2641 taagataggt ttaacacgct ttgaaacagg aggaagaatt tcatctagtg gcgaagtgca
     2701 atttactctt aaaaactaca acggtataga tgattttcag tttcaaaaag ttgtgatttc
     2761 aacttcagtt ggaacaggac ttggagcctt agctgaagag atcaataaga gtgctgatca
     2821 aaccggtgtt agagctactt ttacagtaga aactagaggt atggctgcag ttagggctgg
     2881 aactacttca gatacttttg ctatcaatgg ggtaactata ggtcaagtag cctatgaaga
     2941 tggtgatgct aatggagctt tagtttctgc aatcaattca gttaaagata ctacaggagt
     3001 tgaagcttcg atcgatgcta atggacaact tttacttact tcaagagaag gtagaggaat
     3061 taaaatcgaa ggaagcatcg gtggtggagc ttttatcaat aaagacatga tggaaaatta
     3121 tggtcgcttg tctttagtta aaaatgatgg taaggatatt ttaatcagtg gtaccaatct
     3181 ttcttctgca ggctttggag cgaataattt tatctctcag gcttctgttt ctttaagaga
     3241 gtcaaaagga agatttgatg ctaatatcgc tgatgctatg ggatttggtt ctgtaaataa
     3301 aggagttatg ttagctggag cttcttctgt tagcgcttat atgagtgctg caggaagtgg
     3361 attttcggca ggttcaggtt attctgtagg tagtggtaag ggttattcta ctgtgcttac
     3421 tactactaat ccaataacta tttcagctgc ttcgcaactt tctaaggtat ataatgtttc
     3481 tgcaggctca ggtttttcaa gtggttcaac actttctcag tttgcaacta tgaaaacaac
     3541 tgcttttgga gtaaaagatg aaaccgcagg tgttaccaca cttaagggtg ctatggcggt
     3601 gatggatata gctgaaacag ccacaacaaa tcttgatcaa atcagagccg acattggttc
     3661 ggtgcaaaat caacttcaag ttactataaa caacatcact gttactcaag tcaatgttaa
     3721 agcagctgaa tcaaccataa gagatgtaga ctttgcagct gaaagtgcaa atttttctaa
     3781 atataacatc cttgcgcaat caggttctta tgctatgagt caggctaatg cagtgcagca
     3841 aaatgtttta aaacttcttc aataatttct tagatgcttt tatgcatcta agcttttaaa
     3901 gtgctttttt cttttctaaa aagtctagca aaggtaaaat agcgatttta agtcttttat
     3961 cttgagcttc taaaagttct atgatatttt ccatcaaaga ttcatgcgca taaatccaag
     4021 caaaaagttt attttgttta tcggagtcat ctttgatatc tttaagatat aaaggcgtta
     4081 atatactttg ttcgtgatgt aaagtagggc ctaaaatttc ttgcaaaaag agatattttt
     4141 tatttgaaag tttttctttg attttgtcta tattttgatt tatttgttca agagagagtt
     4201 tgttctttcc atgggtaaga ttgtgaattt gtttttgaac ttttttacac tcttttttaa
     4261 aattcaagga taaattcata ttttttttga ttttttgata gatttttaat ccgagtttta
     4321 cttgttcttt agtatttaaa acttgtaatt ttttaaattt tttatctttt ttattttcga
     4381 gtaaatcttc acaaagttct ttaaaaggtt tttctatagc gctttctatc ctagcacctc
     4441 cttgggtgca attataagtt ttacttttgc taaaagcaat gaaattttca aaaatttgtc
     4501 taaaaagtgt ccaaatttca gaactttgaa ctttgccatt tcctccataa gctgtagtgc
     4561 taaatctatc taagtccctt tcatagtctc cattgtgtaa attagcatgg ataaaacctt
     4621 gagagtgtgt ttgcccatct ttggcataag ctaaatcctg acctatgaga atgatgtttt
     4681 tatgtcctaa attttcagcc agttcataag ccatgtgaga tacactcata cctccgctaa
     4741 tatatccata atcgtctagc cccaagcatc tagcaaaagg ctggcctttt atgattaaaa
     4801 tgtattttct ttgatttttt tcaagataag aaatggtttt tttatgcacc aaagaagcta
     4861 ctagaaaaat gatgtcttta tcaaaatctt taaaatcatt attaaaacat tcagctacta
     4921 tttcatcgcg ttccaacata caaacataat cgggctttat accatgttta gctaaaatag
     4981 gataagaaga atcagcacaa aaaattgtag ctttattagc atactttttt aataaaggca
     5041 attgtttagt aagagatggt cctgtagaaa caatgatagc tgtatcactt acaccctttc
     5101 ttttagaaag taattcttta taactaggat gggtaatcat ttgaggaaga ttataaacaa
     5161 attgctctat gccttgaaga gcatcttttg gatcattacc atgcataaga ttgtgatttt
     5221 tgatggtttg catattgagt ttattaagtt ttaaaatatc ttctttatag tgttcataaa
     5281 aatcattagc aatgtgtagg ttataagaac gataaaacaa atcccctatc aaacgaaaaa
     5341 ctttatccat tttaggaaga ttaatatcat catgatgtaa aataatgagt cgccctaagc
     5401 ttaaatcttt gctaaaatct atgaaattta aagccaaaaa gataagttct aattcttttt
     5461 caaagatgat tattctttta agtgtttgat tttgaagtag aattttatat aaaattccat
     5521 ttccaaaacc ataaaaaaaa agcacaggat agcgtgcaaa atctttaaaa tattctaaat
     5581 ttttttcaag ctctttgatg ggatcttgat acattttttt taaatttctt ttttttatga
     5641 tattgatatc aagattatct tttccttgag tgaaagtaaa ttctctaagc tcttttagat
     5701 cctcaagttt tttgcgtaag ttgttatact caaaaccgct taaagctttt aaatttttgt
     5761 taaaattatt
//
LOCUS       DBBXRO010000104         5762 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.105, whole genome shotgun sequence.
ACCESSION   DBBXRO010000104 DBBXRO010000000
VERSION     DBBXRO010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5762
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.105"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..187)
                     /locus_tag="ACJFEZ_001455"
     CDS             complement(<1..187)
                     /locus_tag="ACJFEZ_001455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917561.1"
                     /translation="MKNIVFHSDGFGDLLVCFKALYAIKQLYPEYKLFLLTNGLMESD
                     FLEKIPFIDEVLIYKDDF"
     gene            complement(245..1234)
                     /gene="purM"
                     /locus_tag="ACJFEZ_001456"
     CDS             complement(245..1234)
                     /gene="purM"
                     /locus_tag="ACJFEZ_001456"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HGG0917562.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKNPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKSVVAGIAEGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFEGLKLKFDDKIEGKNLIDVL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSRVLENSDAFIIGEICINEGIVLE"
     gene            1295..1900
                     /gene="coaE"
                     /locus_tag="ACJFEZ_001457"
     CDS             1295..1900
                     /gene="coaE"
                     /locus_tag="ACJFEZ_001457"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HGG0917563.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM"
     gene            1897..2646
                     /gene="dapF"
                     /locus_tag="ACJFEZ_001458"
     CDS             1897..2646
                     /gene="dapF"
                     /locus_tag="ACJFEZ_001458"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HGG0917564.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINGIKPHMAFLTGAGVIKAN
                     VDNNSIEVSLGKIKNIQEAFSECEKNWQLCDTGVPHLVHFCENLDEFDLKLCKQMREK
                     YNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIHNQARVIPK
                     SGEELSFKFENEELFFKGKVRYCFEADYNFS"
     gene            2621..3352
                     /locus_tag="ACJFEZ_001459"
     CDS             2621..3352
                     /locus_tag="ACJFEZ_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HGG0917565.1"
                     /translation="MKRIIIFLSFYLLPLFGDSELKNGFGEEYYKLDVEQKRQIFFIK
                     MNAMFDKSFEEIAKERAFVEAFFYDAYKNGLRNSNQNNLEKLINLKNKYRVENLYDFT
                     EYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKH
                     KIRIFDSLQDSVDSYVLNLNRHFAYEEFRNERAKFESEGKEITGLEAIKTLDSYSERK
                     GYYINIVTKIIQRYDLERYNTPNSF"
     gene            complement(3359..4396)
                     /locus_tag="ACJFEZ_001460"
     CDS             complement(3359..4396)
                     /locus_tag="ACJFEZ_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0917566.1"
                     /translation="MKVLNFFYENHPKFEISYERKVQIPLCNIIIKGPKFSGKKTLIF
                     NYLSQFKPNEILFLNLYDTRFENQSLGHLSNFLEKNVQIKFLCIYNVEFALNLQDIKI
                     PIIISTDKKDLHIEGFQELELDYFDFEEFVSISRKNLPINNLVGLFLQSGRSKLGEKN
                     ILLRQNFNTLELEILKYLALNLGQQISISKLFLELKKRLKTSKDSVYHTIKELENTYI
                     IHPISHDEKKLQKIYFRDFGLRNNLCIQKDFTHLFENLILNELFKFKQEFFYNKFFTF
                     YSKVSKIAYISSPTLDIDLIKLRAKKILSKSLELGIFHVVFITLSSEDSFFEQGVKFE
                     VLPFDKFSLGF"
     gene            complement(4510..5094)
                     /locus_tag="ACJFEZ_001461"
                     /pseudo
     CDS             complement(4510..5094)
                     /locus_tag="ACJFEZ_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838154.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Mbeg1-like protein"
     gene            complement(5318..>5762)
                     /locus_tag="ACJFEZ_001462"
     CDS             complement(5318..>5762)
                     /locus_tag="ACJFEZ_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HGG0917567.1"
                     /translation="VTKQLLQMQADAHHLWVKFHNYHWNVKGLQFYSIHEHTEKAYEE
                     MAELFDDCAERALQLGEKAITCQKTLMENAKSPKVEKDCFTPAEVMELIKKDYEYLLA
                     EFKKLNEEAEKVSDTTTAAFAQENIAKYEKSLWMLASALQNTCQM"
BASE COUNT         2099 a          899 c          831 g         1933 t
ORIGIN      
        1 aaaaatcatc cttataaatc aaaacttcat caataaatgg aattttttct aaaaaatcac
       61 tttccattaa tccatttgtt aataaaaata atttatactc tggatagagt tgctttatag
      121 catacaaagc tttaaaacaa actaataaat ctccaaaacc atccgaatga aagacaatat
      181 ttttcatcac ttttccttat tattttttta atttactctt aaaatatctt aaaaaaaatt
      241 ctttttactc taaaacaata ccttcattaa tgcaaatttc gccgataata aaggcatctg
      301 aattttctaa aaccctactt acattagaag gatctacaac cattactaaa cccactccca
      361 tattaaagct tctatacatt tcgctttctt ctacagcctg tcctatagta taaaaaattt
      421 caggagtttt aagatgatgt ttgcgtatag ttgcacccat accacgaggt aaaacgcgtg
      481 gtaaattttc tactaaacca ccccctgtaa tatgagctag agcactgata taaggcttta
      541 aagtaagaaa atcgcgtaca taaattcttg taggctctaa taaaacatcg attaaatttt
      601 taccctctat tttatcatca aatttcagtt ttaaaccttc aaaaagtact tttcttgcta
      661 aagaatagcc atttgaatga agtcctgaac taggaagtgc caataaaata tcaccatttt
      721 taacaaattt acttctatca atctcatctt cttcagccat gcccactgca aaacccgcaa
      781 gatcaaaatc atcttttgca tacattccag gcatttcggc agtctctccg cctattaaag
      841 cacaatttgc cattttacac ccctcggcaa tgcctgccac aactgacttt gcaacctcta
      901 cttcaagctt ggctgtagcg taataatcca agaaaaacaa aggagtagca aaattacaaa
      961 tcaaatcatt cacacacatt gctactaaat cttgccctat ggtgtcgtat ttttttgcat
     1021 caatagccaa acgaagttta gtcccaacac catctgtagc ccccaaaatt acaggatttt
     1081 taaagccact tggcattcta aaagcaccag caaaagaacc aattccacct acaacattat
     1141 cattaaaagt ttctttaacc aaaggtttta tagcctctac aaaggcattt ccattatcta
     1201 tacttacgcc tgcatcttca tatgaaattt tcatttattt tcctttaaga actaaaaagg
     1261 tattttaacg aaaaaagttt taataaggca taagatgaaa aatgcttttt ttgtaaccgc
     1321 ttcaattgct tgtggtaaaa gcacttttat agaaatagcg aattctttag gctttaaaag
     1381 cattagcgca gataaaatcg ctcataaaat tttagatgaa aatgctttag aacttgaaaa
     1441 gattttttct ccctttagct taaaaaattt actcacaaaa gaaaagaaaa tcgatagaaa
     1501 aatccttgga gaaattgttt ttaacaataa agaagctaaa aaaatcttag aaaatttcac
     1561 tcatcctaaa attcgagcta aaattttaga acaaatgcaa attctagata aagaaaataa
     1621 agcttttttt gtagaaattc ctcttttttt tgaaagcggt gcttatgaaa atttaggcaa
     1681 agtcatagta atttacacac ctaaagaatt aagccttaaa agaattatgc aaagagataa
     1741 gcttagctta gaagctgcaa aagcgagact tgattctcaa atagatattg aagaaaaact
     1801 taaaaaagca gattttatca ttaaaaatac taactcttat gccgatttta ggcaagaatg
     1861 tgttaaagta atacaagaaa tttctaaagg aaaaatgtga aattttataa atattgtgca
     1921 agtgggaatg attttgtcat aacaaatgct gatagaaaag aagatagaag tgctttagct
     1981 aaagaacttt gcaatcgtta tgaaggcata ggtgcggatg gctttatagt aattttacct
     2041 catgaaaaat acgactttga atgggaattt tataataacg atggctcaag ggctgctatg
     2101 tgtggcaatg gctcaagggc tgcggcacat tttgtacatc atataaatgg tatcaaacct
     2161 catatggctt ttcttaccgg agcaggagtt ataaaagcaa atgttgataa taatagcata
     2221 gaagtttctt tagggaagat aaaaaacata caagaagcct ttagtgagtg tgaaaaaaac
     2281 tggcaacttt gtgatacggg agttccacat ttggtgcatt tttgtgaaaa tttggatgag
     2341 tttgatctta agctttgcaa acaaatgaga gaaaaatata atgccaatgt aaattttgta
     2401 aaagttgaaa atgacaatac tttaagagtt cgcacttttg aaagaggcgt agaagatgaa
     2461 acacaagcat gtggcacggg catgggagct tgtttttatc ttgcattctt aaataaaaaa
     2521 attcacaatc aagctagagt gattccaaaa agcggtgaag agctaagttt taaattcgaa
     2581 aatgaagaat tattttttaa gggaaaagtg agatattgct ttgaagcgga ttataatttt
     2641 tcttagtttt tatttactcc ctctttttgg cgatagcgag cttaaaaatg gctttggaga
     2701 ggagtattat aaactcgatg tagaacaaaa aagacaaata ttttttatca aaatgaatgc
     2761 aatgtttgat aaaagctttg aagaaatagc caaagaaagg gcttttgtag aagctttttt
     2821 ttatgatgcg tataaaaatg gacttagaaa ttcaaaccaa aacaatctag aaaaattaat
     2881 caatcttaaa aacaaatacc gcgttgaaaa tctttatgat tttacagaat acaaaaaacg
     2941 cattcaaaaa attccaaaat ccatgggtat agcccaagct ttggtcgaaa gtgctacagg
     3001 aacaagccgt tttgcaagag aggcaaataa tctttttgga gaatggacct ggggagaaaa
     3061 gggcttaatc cctgatctaa gacatcctga taaaaaacat aaaattagaa tttttgatag
     3121 cttgcaagat agtgtggatt cttatgtact gaatttaaat cggcactttg cttatgagga
     3181 atttcgcaac gaaagagcta aatttgaaag cgaaggcaaa gaaataacag gactagaggc
     3241 tattaaaact ttagattctt actccgagcg caagggttat tatatcaata tcgttactaa
     3301 aatcatccag cgatacgatc ttgagcgata caatactcca aattctttct agtcttagct
     3361 aaaagccgag tgaaaattta tcaaaaggca aaacttcaaa tttcacccct tgctcaaaaa
     3421 agctatcttc actcgaaaga gtgatgaaaa ctacatgaaa aattccaagc tctaaactct
     3481 tagaaagaat tttcttagcg cgcaatttga tcaagtctat atccaatgtc ggactagaaa
     3541 tatatgcgat ttttgaaacc ttactataaa atgtaaaaaa tttattgtaa aaaaattctt
     3601 gtttaaattt aaaaagctca tttaaaataa gattttcaaa caaatgggta aaatcttttt
     3661 gtatgcatag attgtttctt aagccaaaat ccctaaaata aattttttga agcttttttt
     3721 catcatggct tataggatgg atgatatagg tattttcaag ctcttttatg gtgtgataaa
     3781 cgctatcttt agatgttttt agcctttttt taagctctaa aaaaagcttg gaaatactga
     3841 tctgctgtcc taaatttaaa gctaagtatt ttaaaatttc aagttctaga gtgttaaaat
     3901 tttgtcttaa aagtatattt ttttcaccta atttactacg cccactttgc aaaaaaagtc
     3961 cgactagatt gtttatcggt aaattttttc tactgatact tacaaactct tcaaagtcaa
     4021 aataatcaag ctcaagctct tgaaatcctt cgatatgcaa atctttttta tctgtactta
     4081 tgatgatagg aattttaata tcttgcaaat ttaaggcaaa ttcgacatta tatatgcaaa
     4141 ggaattttat ttggacattt ttttctaaaa aatttgaaag atgccctaag ctttggtttt
     4201 caaaacgagt atcatacaaa tttaaaaata aaatttcatt gggcttaaat tgggataaat
     4261 agttaaaaat caaggttttt ttaccgctaa attttggccc tttgatgatg atattacaaa
     4321 gaggaatttg tacctttctt tcatagctta tttcaaattt gggatgattt tcgtaaaaaa
     4381 aatttaatac tttcaaatat tatcctttta aaaaggaaaa ttataacata tttaaaacct
     4441 tatgcaatat cttgggacaa atcttaggat gatggaattt atttcctata tttagccaaa
     4501 ttggatatcc tattttagaa tgcaaatttt gaacaaaatt aaatttatac catgcatttt
     4561 tttaaaatca ccacaagtat gaaaatgata agaaattttt tggatataag cttcattttt
     4621 gatgtccttt agtatttttt tagcaatacc tggggcttga aaagtgtaaa tattttgaac
     4681 ttctaaggca aaatctaaaa caaaaagcta tgctaaatgc ccacctaagg aatgtcctac
     4741 taaagcaatt ttaccaaagc aaaattcttt ttttattagt gtataaaatt ttaacaaaga
     4801 atcaaattgt tttttaggaa tttttccatt tagaagtata aaatcactaa tcaaatctcc
     4861 aatatcaaat tttaaaggtc ttaaatcact tcctgcgata gctaaaataa attctttatt
     4921 ttccttgttt tgaaataaac ttgctctaaa cccacccctt gaatcaagat aatcttcatt
     4981 aatatgagca agtaaatcaa atcgcttaat aaaataaaat gccatcaaag gctcaaattt
     5041 tcctattata acgcattctt tttgaaaaat attatgagtt aaaaccttaa acaatgtttt
     5101 tctatctata tttaaaaaaa tatctgttgt atttaaatta agataagcag cacgagaaag
     5161 taaggtgtaa tgatataaat gtattagagt atttttattt tgcttaaaat caaaatataa
     5221 atttttcttt aaatttgact cttgagaatt taagtttttt tatgagaaag ttctaaaaat
     5281 tgatttaaat cataaagggg caaaaagccc cttgaaatta catttgacaa gtattttgta
     5341 aagctgaagc aagcatccaa agactttttt catattttgc gatattttct tgcgcaaaag
     5401 cagctgtagt agtatcgcta actttttcag cttcctcgtt taattttttg aattctgcca
     5461 aaagatattc ataatctttt ttgatcaact ccatcacttc agctggagtg aaacaatctt
     5521 tttctacttt tggacttttt gcattttcca ttaaagtttt ttggcaagtg atagcttttt
     5581 caccaagttg taaagctctt tctgcacaat catcaaaaag ttctgccatt tcttcataag
     5641 ctttttcagt gtgctcatga attgaataaa actgtaaacc cttaacattc caatgataat
     5701 tgtgaaattt aacccataaa tgatgagcat ctgcttgcat ttgtaataat tgttttgtta
     5761 ct
//
LOCUS       DBBXRO010000105         5604 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.106, whole genome shotgun sequence.
ACCESSION   DBBXRO010000105 DBBXRO010000000
VERSION     DBBXRO010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5604
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.106"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            62..1597
                     /gene="leuA"
                     /locus_tag="ACJFEZ_001463"
     CDS             62..1597
                     /gene="leuA"
                     /locus_tag="ACJFEZ_001463"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HGG0917568.1"
                     /translation="MKNNKIIIFDTTLRDGEQALGSSLNINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFEAVKNIASKVKNSTICALSRALDKDIDTAYEALKVADSFRIHTFIA
                     TSTLHIQDKLKKDFDEILAMAQRAIARARNYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGARTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTMNGLGERAGNCALEEVVMAIKTRSDYLKGFYTDIKCENISKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSSIGLHENRMLMTARS
                     GRAMIKTCLDNLGYDEKTYNLDEVYESFLRLADKKGQVYDYDLEALMFLSYENDEENE
                     LVLEKLSVISGTIPTACVCVRIKEELKTEACTGNGPIEAVFNCISRITGLNPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFISAYNAIYRSLKVEER
                     KAV"
     gene            1594..2670
                     /gene="leuB"
                     /locus_tag="ACJFEZ_001464"
     CDS             1594..2670
                     /gene="leuB"
                     /locus_tag="ACJFEZ_001464"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HGG0917569.1"
                     /translation="MNTYKIAVLPGDGIGPSVMKEALKILNFVAQKHGFKLETKEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLRHASPLKDEIIQKGVDILCVRELTGGIYFGKQELGKESAYDTEI
                     YTKAEIERITRLAFESARIRNKKVHLIDKANVLASSILWRDVVDQIAKEYEDIKLEYM
                     YVDNAAMQIIKNPSTFDVMLCSNLFGDILSDELAAISGSLGLLCSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEKAARDIENAIAIALERGKMTKDLN
                     ANSYLSTDEMGDCIVEILKENNNG"
     gene            2657..4069
                     /gene="leuC"
                     /locus_tag="ACJFEZ_001465"
     CDS             2657..4069
                     /gene="leuC"
                     /locus_tag="ACJFEZ_001465"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HGG0917570.1"
                     /translation="MTMAKTLYEKVFDSHVVYQKENELPILYIDRHLIHEVTSPQAFS
                     GLKMANRKMARSDLTLATIDHDVSTKSTDLDACSGMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVSPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLISKYGTAKGTGYAIEFCGELIEGLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFEKHCEYWRSLKSDEGAQYD
                     ESIVLDASQIQPQISYGTNPSQVIAINERIPKVSDFINPSDQKSLLDALDYVNLEQDQ
                     SLEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKDVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKASAGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            4071..4673
                     /gene="leuD"
                     /locus_tag="ACJFEZ_001466"
     CDS             4071..4673
                     /gene="leuD"
                     /locus_tag="ACJFEZ_001466"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HGG0917571.1"
                     /translation="MQKFTTHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNASILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVVSIIKQLKESEDKNIEISLFEKKVFFKDQVFS
                     FDLDEFRRTCLLEGLDNIALTLKYEEQIKAYEKNSKSFLV"
     gene            complement(4653..5183)
                     /locus_tag="ACJFEZ_001467"
     CDS             complement(4653..5183)
                     /locus_tag="ACJFEZ_001467"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HGG0917572.1"
                     /translation="MQNFVIEKATQKDLNSILNITKDALNSMKAMNFNQWDEHYPNEE
                     IFKEDIKAQELYLYKEKDEILGFICINEKFEPEFYEQINFKKSYNNLAFYLHRLAVKE
                     NAKGKGVAQKLLNFCETYAKNEGKYSLRADTHSKNIPMNSLFKKLNFEFCGAFHIPCY
                     EDEFFAYEKILNQKAF"
     gene            complement(5414..5489)
                     /locus_tag="ACJFEZ_001468"
     tRNA            complement(5414..5489)
                     /locus_tag="ACJFEZ_001468"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5454..5456),aa:Val,seq:gac)
     gene            complement(5491..5566)
                     /locus_tag="ACJFEZ_001469"
     tRNA            complement(5491..5566)
                     /locus_tag="ACJFEZ_001469"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5531..5533),aa:Ala,seq:ggc)
BASE COUNT         1925 a          780 c         1127 g         1772 t
ORIGIN      
        1 ttaagttttt gaatttttaa taaaattcat tcggtttatc tcgtttttta aggattaaaa
       61 tatgaagaat aataaaatta tcatttttga tacaacttta cgcgatggtg aacaagcctt
      121 aggcagttct ttaaatataa atcaaaaatt acagattgcc ttagcgcttg aaaatttagg
      181 tgttgatgtg atagaagcag gttttcctgt atcttcacaa ggagattttg aagcggtaaa
      241 aaatatagcc tcaaaagtaa aaaattcaac catttgtgcg ctttctagag ctttggataa
      301 agatatagat accgcttatg aggctttaaa agtggcggat tcttttagaa ttcatacttt
      361 tatagccact tcaactttgc acatacaaga taaattaaaa aaagattttg atgaaatttt
      421 agctatggca caaagagcga ttgcaagagc tagaaactat actgatgatg tggaattttc
      481 atgtgaagat gcaggaagaa ctcctattga taatctttgt tttatggtag aaaatgctat
      541 caaagcaggg gctagaacta tcaatatacc tgatactgtg ggttatactt tgccaagtga
      601 atttgctaat atcatcaaaa ttttatttaa caaagtgcca aatatagaca aagctatcat
      661 ttctgtgcat tgtcataatg acttaggtat ggcaacaggc aatagcttaa gtgctatttt
      721 acaaggcgca agacagatag aatgtactat gaatgggctt ggtgaaaggg ctggaaattg
      781 cgctttggaa gaagttgtaa tggcgataaa aacaagaagc gattatttaa aaggttttta
      841 tacagatatc aagtgtgaaa atatttctaa aacttcaaaa ttagtttcag ctatcactaa
      901 tgaaagcata ccttcacata aagccatagt aggaagtaac gccttttctc atagttctgg
      961 aattcatcaa gatggagtac ttaaaaatag acaaacttat gaaattataa gccctagcag
     1021 cataggactt catgaaaatc gtatgcttat gactgcaaga agcggtagag ctatgattaa
     1081 aacttgtctt gataatttag gatatgatga aaaaacttat aatttagatg aagtttatga
     1141 gagtttttta cgccttgcgg ataaaaaagg acaggtttat gattatgact tagaggcttt
     1201 aatgttttta agttatgaaa atgatgaaga aaatgaatta gtacttgaaa aattaagcgt
     1261 aatcagcggc actatcccaa cagcttgtgt ttgtgtgcgt ataaaagaag aattaaaaac
     1321 tgaagcttgt accggaaatg ggcccataga agcggtgttt aattgcatct ctagaatcac
     1381 aggcttaaac cctgttttaa aagcatatag cattaatgca aaaagttcag gtgtggatgc
     1441 acaagggcaa gtggatgtgg atttagaatt taaagggaga aaatttcatg gcaaagggct
     1501 ttcaacagat gttatagaag catcagctca agcctttatc agtgcttaca atgcaattta
     1561 tcgatcttta aaagttgaag aaaggaaagc agtatgaata cttataaaat agcagttttg
     1621 ccaggagatg gcatagggcc ttcagtgatg aaagaggctt taaaaatttt aaattttgtc
     1681 gcccaaaaac acggctttaa attagaaaca aaagaagcga agataggtgg ggcaagtata
     1741 gatgcctatg gggtagcatt aagcgatgag actttaaagc tttgtgagca aagcgatgct
     1801 attttgtttg gttcagtagg aggacctaag tgggataatc tacctataga tcaaagacct
     1861 gaaagagctt cgcttttacc tttaagaaag cattttaatt tatttgcaaa tttgcgtcct
     1921 tgtaaaattt atgaaagctt aagacatgct tcgcccttaa aagatgaaat tatccaaaaa
     1981 ggtgtggata tcttgtgcgt tagagagctt acaggcggga tttattttgg taagcaagaa
     2041 ttgggcaaag aaagtgctta tgatactgaa atttacacta aagcagagat agaaaggatt
     2101 acacgccttg cttttgaaag tgcaagaata agaaataaaa aagtgcatct aattgataag
     2161 gcaaatgttt tagcaagttc tattttatgg cgtgatgtag tagatcaaat tgcaaaagaa
     2221 tacgaagata tcaagctaga atacatgtat gtagataatg cagctatgca aattattaaa
     2281 aatcctagca cttttgatgt aatgctttgt tctaatcttt ttggcgatat tttaagcgat
     2341 gaattagcag ctataagtgg atctttgggc ttgctttgtt ctgcgagttt aaatgataaa
     2401 ggttttgggc tttatgagcc agcaggtggt tcagctcctg atatagctca tttaaatata
     2461 gccaatccta tagcccaaat tttaagtgct gctttgatgt taaaatatag ctttaaagaa
     2521 gaaaaggctg caagggatat agaaaatgcc atagccatag ctttagagcg tggaaaaatg
     2581 actaaggatt taaatgcgaa ttcttattta agcaccgatg aaatggggga ttgtatagta
     2641 gaaattttaa aggagaataa caatggctaa aactttatat gaaaaagtgt ttgattctca
     2701 tgtggtttat caaaaggaaa atgaacttcc tatactttat atcgatagac atttaatcca
     2761 cgaagtaaca agccctcaag ctttttcagg tcttaaaatg gcaaatcgta aaatggcaag
     2821 atcggatttg actttagcaa ctatagatca tgatgtatcg actaaaagca cagatttgga
     2881 tgcttgttca ggtatggcaa aagagcaaat tacgactttg atgcaaaata ctaaagaatt
     2941 tggagtcaga cttttaggcc taggcgataa aaatcaaggt atagtgcata tagtaagtcc
     3001 cgagcttggt tttactttac cgggtgtaac tttggtttgt ggggattctc acactgcaac
     3061 acacggggcc tttggagctt tggcttttgg tataggcaca agcgaggtcg agcatgtaat
     3121 ggctacgcaa actttaaaac aagcaaaact taaaactatg aaaatagaat gtaagggtca
     3181 gtttcaaaag ggtgtttatg ctaaggattt gattttatat cttatatcaa aatacggtac
     3241 cgcaaaaggc acaggctatg ctatagaatt ttgtggagag ttgatagaag gcttgagtat
     3301 ggaagctaga atgacacttt gcaatatggc tatagaattt ggagcaaaag tcggtatgat
     3361 agctcctgat gagattactt ttgagtatat aaaagggaaa gaatttgctc caaagggaga
     3421 agaatttgaa aagcattgtg agtattggag aagtttaaaa agcgatgagg gtgcacaata
     3481 tgatgaaagt atagtccttg atgcaagcca aattcaaccg caaatcagct atggaactaa
     3541 tccttctcaa gttattgcta taaatgaaag aattccaaaa gtcagtgatt ttatcaatcc
     3601 aagcgatcaa aaatctttac ttgatgcttt agattatgtg aatttggagc aagatcaaag
     3661 cttagaaggg gtaaaaatcg atattgtttt cataggttct tgtacaaatg ggcgtttaga
     3721 agatcttaag atagctgcgg atattttaaa agggcgtaaa attcacaagg atgttaaagc
     3781 tttaatcgtg cctggttcta tgcaagtgag aaaagaagct gaaaatttag gacttgataa
     3841 aatttttatc gaagcagggt gtgagtggag atatgcaggg tgttcaatgt gtcttggtat
     3901 gaatgatgat aaagcaagtg cgggacaaag agttgcttca acttcaaatc gtaattttgt
     3961 aggcagacaa ggtaaaggtt ctatcaccca cttaatgagt cctgcaagcg cagcagcctg
     4021 tgccatagaa ggcgttattt gtgataatag aaaatattta ggagtttaaa atgcaaaaat
     4081 ttactactca taaaggtata gcttgtcctt tggaatatgc caatatcgac acagatcaaa
     4141 tcatccctaa gcaattttta cttgcagtgt ctaagcaagg ttttggcaag catttgttcc
     4201 atgatttgcg ttatttagac gataaagaaa gcgttttaaa tatggatttt aatctcaata
     4261 aaaaagaata ccaaaacgct tctatcttgg taagttttga aaattttgga agcggttctt
     4321 caagggagca cgcaccttgg gctttggtgg attatggtat aagagctatt atcgcgcctt
     4381 cttttgcaga tatttttaaa aataatgctt taggaaatgg tttgcttact atagagcttg
     4441 ctaaagatga ggttgtaagc attataaaac aactgaaaga atctgaagat aaaaatatag
     4501 aaatttcttt atttgagaaa aaggtatttt ttaaagatca agttttttct tttgatttgg
     4561 atgaatttcg tagaacctgt ttactagaag ggcttgataa tatagcttta actttaaaat
     4621 atgaagaaca aatcaaggct tatgagaaaa actcaaaaag ctttttggtt taggattttt
     4681 tcataagcga aaaattcatc ttcatagcaa gggatatgaa aagccccaca aaactcaaaa
     4741 tttaattttt taaagagcga attcataggg atatttttac tatgagtatc cgctcttaag
     4801 ctatattttc cttcattttt agcataagtt tcacaaaaat ttaacagctt ttgcgccacg
     4861 cctttgcctt tagcattttc ttttacagcc aaacggtgca gataaaaagc tagattattg
     4921 taggattttt taaagttgat ttgctcgtaa aattcgggtt cgaatttttc attgatgcaa
     4981 ataaagccta gaatctcatc cttttcttta taaagataaa gctcttgtgc tttgatatct
     5041 tctttaaaaa tttcttcatt agggtaatgt tcatcccatt gattaaaatt catagctttc
     5101 atggaattta gagcgtcttt tgttatgtta agtatggaat ttaaatcttt ttgtgtagct
     5161 ttttctatga caaaattttg cataaaaatc cttttgtaat gtaaatacta gtgtttaact
     5221 ttaatatttt ttgtaagttt tatttcttca aaaaacccta ttgagtttta aaagccccaa
     5281 aaagaacttt aattaattga aaatcattat aacacaaaag caataaattg aaatcaaaaa
     5341 tcctttagtt tgtttatata tagtgctttt aaggtatttt ttgaaagttg aagaaattga
     5401 aagaaatgaa aaatggtggc tccgattgga cttgaaccaa cggccactac catgtcaagg
     5461 tagtgctcta ccaactgagc tacggaacca tggtggagca tagcgggttc gaaccgctga
     5521 ccccaacgct gccagcgttg tgctctccca gctgagctaa tgccccttag aattttctaa
     5581 aaaattttag cgcaatatta cttt
//
LOCUS       DBBXRO010000106         5602 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.107, whole genome shotgun sequence.
ACCESSION   DBBXRO010000106 DBBXRO010000000
VERSION     DBBXRO010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5602
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.107"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..336
                     /locus_tag="ACJFEZ_001470"
     CDS             <1..336
                     /locus_tag="ACJFEZ_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917573.1"
                     /translation="CGANPTQDAQLARKWYVDYGGGIKNLGNQTAPKIDLRQAQHFIL
                     TMTARGAIGIANWGGAGKSGTITVNNAQNITAFSAPFKFRIAQSGFSGTETFAYFCIA
                     SNNVRLVRT"
     gene            338..727
                     /locus_tag="ACJFEZ_001471"
     CDS             338..727
                     /locus_tag="ACJFEZ_001471"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917574.1"
                     /translation="MTSVLLSQSLHAISIGGKDEFFANKDLSIPVINTNKALNASKKY
                     YLIFECEFVKSFSYKSATQGSGIFVDDKLFTTVVKTTSGTKGQKFTYQGWVKGSKIKH
                     VNLDRSWTYSPASQTHIKTTKFELYYN"
     gene            740..1375
                     /locus_tag="ACJFEZ_001472"
     CDS             740..1375
                     /locus_tag="ACJFEZ_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HGG0917575.1"
                     /translation="MFYDIENQTLKYDDIFLKDVKIQNEEGEIDAQDTYFLSACDDNL
                     LKELGFAKVEEEEVPSFDEKTQTLKQVQNYDEENNLYIVSYEIKEKTLEELKELKLEE
                     LKATKEEKLLFMPFKNTIFQIDTEAKINISGKVSEIMLANLNNTPLENIAWIDKDNKI
                     ITFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATSLEELNLIAWESEK"
     gene            1372..1752
                     /locus_tag="ACJFEZ_001473"
     CDS             1372..1752
                     /locus_tag="ACJFEZ_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917576.1"
                     /translation="MSTENIIKEGAILGSLSGSALLGLMVFVLAGIAWHLYKTLHKEA
                     GERTKELISETKNTNVLIREQIAVSRASNDSLIKFIQTHCSKTNDKLEAIETDLMRMD
                     ERLVKLTQIRNDELRMIYKRKENE"
     gene            1749..2222
                     /locus_tag="ACJFEZ_001474"
     CDS             1749..2222
                     /locus_tag="ACJFEZ_001474"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917577.1"
                     /translation="MKIAFYKVKENDKSTFLDKAIAFFTSSWKERLNGDFLNSYSHCE
                     IILDNLMISSSPRDKGVRIKEFKDTGRWDFIEINDINETKIKEFLYSQIGKKYDFLGI
                     LGFFTFTKDSEDKWFCSEIIIRALQIGGLVKLGDMNAGSSSPNRLYKKLKDTNEN"
     gene            2212..2688
                     /locus_tag="ACJFEZ_001475"
     CDS             2212..2688
                     /locus_tag="ACJFEZ_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5675 family protein"
                     /protein_id="HGG0917578.1"
                     /translation="MKIKIIRRYTGKTCVIGKFKVFNDDDKLLFECFSLEEDKEGVER
                     NKDLRIPEGIYNLERHTGSSFNISGRKTVAGVKVLKDDDFVINVYNEEVPLDRRILIH
                     WGNSHENTEGCILLGLTKANNNEYITSSRQACKEFYDLMYKKDLSEIKLEIVNELV"
     gene            2685..3125
                     /locus_tag="ACJFEZ_001476"
     CDS             2685..3125
                     /locus_tag="ACJFEZ_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917579.1"
                     /translation="MSKLISFALSFFSGDKKLYIALGLSLILLGYFYLRLDSTKAKLE
                     KSQSDLALALEINRNNEAKLKELTQIHKAELKAINEANNQKNEVQKKVQYVKEYIYKS
                     NENNLTKLFNNVVDRLWDDNSTSGNKNRNSKSENTTRATNSKPP"
     gene            3022..3240
                     /locus_tag="ACJFEZ_001477"
     CDS             3022..3240
                     /locus_tag="ACJFEZ_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917580.1"
                     /translation="MWLIGCGTTTQQVVTKIEIQKVKIPQELLTLSPLEKPKAKNELD
                     ILNAYSMLFYKYKQCEIQISKIKELNNE"
     gene            3233..3859
                     /locus_tag="ACJFEZ_001478"
     CDS             3233..3859
                     /locus_tag="ACJFEZ_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917581.1"
                     /translation="MSNTNVDYNKRLEVFKEIYPQILEMSLAEKSPFGEFKKLLEQFG
                     NDNIIRNDTQFQSLAQALVSVGQTIVAQSQNTALQMILGGDENIVNQANINLTNAQIE
                     TEKANANLVKRQTAQIDDELELKEQSVNIDKSLSIEKEKLLQAQTETEKAKPALIARQ
                     TAQIDDNLRIEAAKVTQSVQFGYCTGGLDIPQEIMSLVKEKIENIEKF"
     gene            3862..5592
                     /locus_tag="ACJFEZ_001479"
     CDS             3862..5592
                     /locus_tag="ACJFEZ_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917582.1"
                     /translation="MLIDEKRLMKNYTLKPAYPSNIGKLDTGEVYKQWFTYAMIGVNK
                     YVELLHKQLIRKGRSYSQNATHPLYPNSYIVKKYNIKSASTAPYDKHSHGNLGLNQFF
                     VGQDPYKPYKGDPSSKNGIYHDICEIRTKYNLGNMQYYYGFPNNLTLLFEKEKAWKYH
                     GKGFFYIDEKINFKDILNKALEGISYEMLINDIEVVIFCQTIQKNNKWIYSSIDDIKI
                     PNIKVENIEFKPLFGKPYKKLCVDVEKFFSDFKELNKSIFRIEKVEITYRIYEKVQKT
                     RESDSGKTYYALTSKKVSFFEVFNSIKEIYKCKYALPLCFYNSFNFVCYEEPYVAFSS
                     LNNTSWGKKDTSVTPSIYPLYRKNSNLPYGRRDRWFALWDSFYYLYVYEKSSKGILSF
                     LAPIVTIVLAVATWWIGGQGAWLGTLIGVSETIASGITLGISLGLAIGSLTGNKTFSI
                     LNAVWGLVNFLGAWGANNWNLAADFTKNTAQIAQEMTTFESTLNIAGNLLSGASKIFD
                     VVQSITANTPDMINEQKGSDLDNNEGGNGSEALELAKDMINPTIWYNFETTDILNEKI
                     EKNRNLIFAF"
BASE COUNT         2277 a          708 c          989 g         1628 t
ORIGIN      
        1 tgtggtgcta atcccacaca agatgcacaa ttggcaagaa aatggtatgt ggattatggc
       61 ggcggaatta agaacttagg aaatcaaaca gcaccaaaaa tagatttaag acaagctcag
      121 cattttatct taacaatgac agccagagga gctattggta tagcaaattg gggtggagca
      181 ggtaaaagtg gaaccatcac tgtcaataat gctcaaaata tcactgcttt ttcggcacct
      241 tttaaattta gaatagctca aagtggattt agtggcactg aaacttttgc ttatttttgc
      301 atagcttcga ataatgtaag attagtaagg acttaagatg actagcgtac tattatcaca
      361 aagccttcat gcgataagca taggtggaaa agatgagttt tttgcaaata aggatttatc
      421 cattcctgta ataaacacaa ataaagcttt aaacgctagt aaaaaatatt atttaatttt
      481 tgaatgtgaa tttgttaaaa gttttagcta taaatcagcc actcaaggaa gtggaatatt
      541 tgtagatgat aagcttttca cgacagttgt gaaaaccaca agcggaacca aaggacaaaa
      601 atttacatat caaggatggg taaaaggaag caaaataaaa catgttaatc ttgatagaag
      661 ctggacttat tctccagcct cacaaactca tataaaaacc actaaatttg aactttatta
      721 caactaaagg agaataaata tgttttacga tattgaaaat cagactttaa aatatgatga
      781 tattttttta aaagatgtaa aaatacaaaa cgaagaaggt gaaattgatg cacaagatac
      841 ttatttttta agtgcttgcg atgataatct tttaaaagag cttggttttg ctaaagttga
      901 agaagaagaa gtgccaagct ttgatgaaaa aacacagaca cttaagcaag ttcaaaatta
      961 cgatgaagaa aataatcttt atattgtttc ttatgagatt aaagaaaaaa ccttagaaga
     1021 gttaaaagaa ttaaaattag aagagttaaa agctacaaaa gaagaaaagc ttttgtttat
     1081 gccttttaaa aatactatat ttcaaattga cacggaagca aaaattaata ttagcggaaa
     1141 agttagcgag ataatgttag caaatctcaa taatactcct ttggaaaata ttgcttggat
     1201 tgataaagat aataaaatca ttacatttaa caaagaagaa tttttagaat ttggggttgg
     1261 tatcgctaaa tatactgaaa gtattatttt taaaaatgat gaactaagaa ataaagtgaa
     1321 aaatgccaca tctttagaag aattaaattt aattgcatgg gagagtgaaa aatgagtact
     1381 gaaaatataa taaaagaagg tgctatactc ggttctttaa gtggatctgc attattagga
     1441 ttgatggttt ttgtcttagc tgggattgca tggcatttat ataaaacttt acataaagaa
     1501 gctggggaaa gaacaaaaga acttataagt gaaaccaaaa atactaatgt tcttattaga
     1561 gaacaaattg cagtatccag agcaagcaat gatagcttaa tcaaatttat acaaacgcat
     1621 tgctctaaaa ctaacgataa gctagaagct atagaaacag atcttatgcg aatggatgaa
     1681 aggcttgtta agcttactca aataagaaat gatgagttaa gaatgattta taaaagaaag
     1741 gaaaacgaat gaaaattgca ttttataaag ttaaagaaaa tgacaaatct acttttcttg
     1801 ataaagcaat agcttttttt acttcatctt ggaaagaaag attaaatgga gattttttaa
     1861 attcctattc tcactgtgaa ataatcttag acaatttaat gattagctca agtcctagag
     1921 ataaaggagt aagaataaaa gaatttaaag acactggcag atgggatttt atagaaatca
     1981 atgatataaa tgagacaaaa ataaaagaat ttctttactc tcaaatagga aaaaaatatg
     2041 attttttagg aattttgggc tttttcacat tcacaaaaga tagtgaagac aaatggtttt
     2101 gttctgaaat cataataaga gcgttgcaaa taggtggttt ggttaagcta ggagatatga
     2161 atgcaggaag ttcaagtcct aatagattat ataaaaaact aaaggataca aatgaaaatt
     2221 aaaatcatta gaagatacac tggaaaaact tgtgttatag gcaaatttaa agtttttaat
     2281 gatgatgata aattgctatt tgaatgcttt tctttagaag aggataaaga aggagttgaa
     2341 agaaacaagg atttgagaat accagaaggc atttataatt tagaaagaca tacaggttct
     2401 agctttaata ttagcggtag gaaaacagta gcaggtgtta aagttttaaa agatgatgat
     2461 tttgtgatta atgtctataa tgaagaagtg ccacttgata gaagaatttt gatacattgg
     2521 ggaaatagcc acgaaaacac cgaaggttgc atacttctag gcttaacaaa agcaaataat
     2581 aacgagtata taacttctag taggcaagct tgtaaagaat tttacgattt aatgtataag
     2641 aaagacttat cagaaatcaa acttgaaatc gtaaatgagc tagtatgagt aaattaatat
     2701 catttgcttt aagcttcttt agcggagaca aaaagcttta tattgcttta ggcttatctt
     2761 taattttgtt aggatatttt tacttaagac ttgacagcac aaaagctaaa ttagaaaaaa
     2821 gccaaagtga tttagctttg gctttggaga ttaacagaaa caatgaagca aagctaaaag
     2881 aactcacgca aattcacaaa gcggagctaa aagcaatcaa tgaagcaaat aatcaaaaaa
     2941 atgaagttca aaaaaaggtg caatatgtta aagaatatat ttacaaaagc aatgagaata
     3001 atctcactaa gctttttaac aatgtggttg ataggctgtg ggacgacaac tcaacaagtg
     3061 gtaacaaaaa tcgaaattca aaaagtgaaa ataccacaag agctactaac tctaagcccc
     3121 cttgaaaagc caaaggcaaa aaatgaacta gatattttaa atgcttattc tatgcttttt
     3181 tacaaataca aacagtgtga aattcagata agcaaaataa aggagctaaa taatgagtaa
     3241 tacaaatgtt gattacaata aaagacttga agtttttaaa gaaatttatc cgcaaatttt
     3301 agaaatgagc ttagcagaaa aatccccatt tggagaattt aaaaaacttt tagaacaatt
     3361 tggaaatgat aatataatta gaaacgatac acaattccag agcttagcac aagctctagt
     3421 aagtgttgga caaaccatag tagcacaaag tcaaaacact gccttgcaaa tgattttagg
     3481 tggagatgaa aatatagtaa atcaagccaa tataaatcta acaaatgcac aaatagaaac
     3541 agaaaaggca aatgcaaatt tagtcaaaag acaaaccgct caaatagatg atgaattaga
     3601 gctaaaagag caaagtgtca atatagataa aagcttaagt atagaaaaag aaaaactatt
     3661 gcaagcgcaa acagaaacag aaaaagcaaa gcccgcatta atagctagac aaactgctca
     3721 aatagatgat aacttaagaa tagaagctgc aaaggttaca caaagcgttc aatttggata
     3781 ttgcactggt gggcttgata taccgcaaga gattatgagt cttgttaaag aaaaaataga
     3841 aaatatagaa aaattttaat aatgctaata gatgaaaaaa ggcttatgaa aaactacact
     3901 cttaagcctg catacccttc aaatataggt aagctagata caggggaggt ttataaacaa
     3961 tggtttactt atgccatgat aggcgtaaat aaatatgttg aacttttaca taaacaactc
     4021 ataagaaaag gtaggagtta tagccaaaac gcaacacatc ctctttaccc aaactcctat
     4081 attgtaaaaa aatataacat aaaaagtgca tcgacagccc cttatgataa acatagtcac
     4141 ggcaatttgg gcttaaatca atttttcgta ggtcaagatc cgtacaaacc ctataaagga
     4201 gatcctagca gtaaaaatgg aatatatcat gacatttgcg agataagaac taaatataat
     4261 ttaggaaata tgcaatatta ttatggtttt ccaaacaatt taactctttt atttgaaaaa
     4321 gaaaaagctt ggaaatatca cggaaaagga tttttttata tcgatgaaaa aataaatttt
     4381 aaagatatac tcaataaagc attagaaggc ataagttatg aaatgcttat aaacgatatc
     4441 gaagtagtta ttttttgcca aaccatccaa aaaaataata aatggatata ttctagcatt
     4501 gatgatatta aaataccaaa catcaaagtg gaaaatattg aatttaaacc attatttgga
     4561 aagccttata aaaaactatg cgttgatgtt gaaaagtttt ttagtgattt taaggagtta
     4621 aataagagta tatttagaat tgaaaaagta gaaataactt atagaatata tgaaaaagtt
     4681 caaaaaacta gagaaagtga ttcaggtaaa acatactatg ctttaacaag caaaaaagta
     4741 tctttttttg aagtatttaa ttctataaaa gaaatatata agtgcaagta tgcactcccc
     4801 ttgtgttttt acaatagttt taattttgtt tgttatgaag agccctatgt agcattttct
     4861 tctctaaata atacaagttg gggtaaaaaa gatacgagtg ttacgccaag tatatatcca
     4921 ctatatagaa aaaactcgaa cttaccttat gggcgcagag atagatggtt tgcattatgg
     4981 gatagttttt attatcttta tgtatacgaa aaatcaagca aaggaatttt aagcttttta
     5041 gcacctattg tcactatcgt tttagctgta gctacttggt ggattggcgg acaaggtgca
     5101 tggcttggta ctttaatagg agtgagcgaa accattgctt caggaatcac actagggatt
     5161 agcttaggtt tagccatagg ttctctaact ggaaataaaa cattctccat tcttaatgct
     5221 gtttggggtc ttgttaattt tctaggtgct tggggtgcca ataattggaa tttagccgct
     5281 gattttacaa aaaatacagc acaaatcgca caagagatga caacttttga atcaacttta
     5341 aatattgcgg gtaatttatt aagcggagct agtaagattt ttgatgtggt acaaagcatt
     5401 acagctaata cccctgatat gataaatgag caaaaaggta gcgatttaga caacaatgaa
     5461 ggcggaaatg ggagcgaagc tttggaatta gcaaaagata tgattaatcc tacaatatgg
     5521 tataattttg aaaccacaga tatactaaac gaaaaaatag aaaaaaatag aaatcttatt
     5581 tttgcattct aaaaagttat tg
//
LOCUS       DBBXRO010000107         5555 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.108, whole genome shotgun sequence.
ACCESSION   DBBXRO010000107 DBBXRO010000000
VERSION     DBBXRO010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5555
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.108"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            19..2133
                     /locus_tag="ACJFEZ_001480"
     CDS             19..2133
                     /locus_tag="ACJFEZ_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HGG0917583.1"
                     /translation="MNPSKRVLKLSLLVFLLSTGINAQELNDKAIQMQKVVVSATGFE
                     QDADNNLRNVIVIDGKDLEKRGFNTLEQALERISGISFVNFGLGRNIDMRGQGSKSNI
                     AVKVMVNGNAINVLDNSHGVTPLESVNLNNIERIEIIPGGGSVLYGSGTRGGVINIIT
                     KKEKSDAFALSLKGSSYDHGNLGGNLGVYGAKKINDYLTFGFDIQGFNRDGYQEGYNE
                     KGYFVNTKAYLNTSDNSDLSLNYNYFESKNTSSGYLTKAQIQSDPTQKGSGDNITQIN
                     RPEIALDYHHYFSDLYEIQLGAFWQNQKIRYLKDEIPMMGTIAYQTGSGFEDTLTGIN
                     LKNKINYKDDSYFIFGYEFANHDAKRTSIVHYNVNTPTFQMSHTMTTLMDMNKQSHSV
                     FALDSHQFNDIFSISGGARYEYSLYDTHRSYTSKMIMGGTQRPSNPELFDSDDTSNNF
                     AFEITPNFKYSDTGNIYAKYERGFISPTPAQLVNKDQATQKYYTANLDPEIFDTFELG
                     INDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTGGAFWKYYNIDQTRRLGAELNLHQF
                     LFNDSLILKESLSYLDAQISKGVNDGLRIPYVSKIKATAGVEYAWNKNLSSYIDLSYF
                     SRAKDGGVVDENTGKMSRNSWIKDYFLTDIGVNYNYRNLQILAGIRNLFDKQYYTYQD
                     STNDQYLAGNGRNYYVEFKYAF"
     gene            2108..3094
                     /locus_tag="ACJFEZ_001481"
     CDS             2108..3094
                     /locus_tag="ACJFEZ_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FecCD family ABC transporter permease"
                     /protein_id="HGG0917584.1"
                     /translation="MLNLNMRSKNLVIIGLFLAYIITCIIALCLGDENLSPKELLSYA
                     FGENEILRQIIIDGRLPRIIMAILIGMLLASSGAVTQNVFSNPIADPYIIGIASAATF
                     GSVLAYLLKLPDYYYGILGFICSAIFSLAIFKVSSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGSASWFRIGILILPLIFCLMYFYAHKNELNIILSGDD
                     EARNLGVDAQKLKINLLIVSSLAVSFAVAFTGLIAFVGLIIPHTVRLLLRNYDNALVI
                     PFCTAFGGLFLLICDTLARTLIAPVQIPIGVLTAFFGAPVFLYLALSARRFL"
     gene            3094..3870
                     /locus_tag="ACJFEZ_001482"
     CDS             3094..3870
                     /locus_tag="ACJFEZ_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0917585.1"
                     /translation="MLKIQNLSFSYHKKELLKNINLELQNKAFIGILGPNGSGKSTLL
                     KLILKNLNISKGEISLFNTNIKNFALKEFAQLCGFVPQNSGLNTPLKVIDVLLMSKFT
                     NLKHAFCDYSKEDILEVEKFAKTLKLENFLERNMLSLSGGEFQRVLLARALLKKPKIL
                     FLDEPTSALDLNHAIELLSLCERLIKQNNIAVVAILHDLNLASMFCDKVLFLKEGEIK
                     YFGSTKELFTKEILKEIYNLNCEIVYKDLKPYILALKEKI"
     gene            3867..4673
                     /locus_tag="ACJFEZ_001483"
     CDS             3867..4673
                     /locus_tag="ACJFEZ_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0917586.1"
                     /translation="MKKILIIMSLFLTLLNAKERIVVLDPASIETLFMLNAQDQIVGI
                     ANLQHSNIYPEEKTSKITSVGTFSHPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAQRLDEIKSNIQILAKLTDKEEQGKKLLEEFEQGLQELQKNPLNKSGIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSEIARPIISAEYILKQNPDLLILGINADGNI
                     LNANALLKNTKAAQMGQIYHNENTHILLRLSPKIIDRIKEFKTRLENQNF"
     gene            complement(4670..5527)
                     /locus_tag="ACJFEZ_001484"
     CDS             complement(4670..5527)
                     /locus_tag="ACJFEZ_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPASM domain-containing protein"
                     /protein_id="HGG0917587.1"
                     /translation="MKFKKLYIELSDICGLKCDFCPSKKALRGVMSVENFSKLARQIW
                     DKSEIFTFHLLGDPLLLNNLEEYLQIAKNHQMKLEITTSGFYFSPKNSKLLLKYDNIH
                     QINISLMAFLSQSKLSLEQYFKPILEFCKEHLEYKKSSFINLRLWNLDTNFKAPSENL
                     PIYEFLSKEFGVRILTHLAKNRLQRHILLHQNKLFKWPSLKDKPLYTQGKCHALKEQI
                     GILSDGTLVPCCLDTKGDISLGNVFNAEFKSLLESKRIQEIKKAFEENKRIEKLCQSC
                     EFFKTRLSD"
BASE COUNT         1950 a          856 c          907 g         1842 t
ORIGIN      
        1 tttaaaagga gtaaaaattt gaatccaagc aaaagagttt taaagctatc tttactagta
       61 tttttactaa gcactggtat caatgcacaa gaattgaatg ataaagccat tcaaatgcaa
      121 aaagttgttg taagtgcaac aggatttgaa caagatgcag acaataactt gcgtaatgta
      181 attgttatcg atggtaaaga cttagaaaaa agaggattta ataccttaga acaagcctta
      241 gaaagaattt caggcattag ttttgtaaat tttggactag gacgcaatat cgatatgcgt
      301 ggacaaggaa gcaagtccaa tatagctgtg aaagttatgg taaatggaaa tgctattaat
      361 gtgcttgata attctcatgg cgtaactcct ttagaaagtg tcaatttaaa caatatagaa
      421 cgcatagaaa tcataccagg gggaggctct gtgctttatg gaagtggcac tagagggggt
      481 gtgattaata tcattacaaa aaaagaaaaa tccgatgctt ttgctctaag tcttaaaggc
      541 agtagttacg atcatggaaa tttaggtgga aatttaggcg tttatggggc taaaaaaatc
      601 aatgattatc taacatttgg ttttgatata caaggcttta accgcgatgg ctatcaagag
      661 ggttataatg aaaaaggcta ttttgtcaat acaaaagcct atctaaatac tagcgataat
      721 agtgatttat ccctaaatta taattatttt gaaagcaaaa atacaagcag tggctatctt
      781 acaaaagcac aaattcaaag tgatccgacc caaaaaggaa gtggtgataa tatcactcaa
      841 atcaatagac ctgaaattgc tttagattat catcattatt ttagtgattt atacgaaatt
      901 caactcggag cattttggca aaatcaaaaa ataagatatc taaaagatga aattccaatg
      961 atgggcacca tagcttatca aaccggtagc ggttttgaag atacgcttac gggtataaat
     1021 ttaaaaaata aaatcaatta caaagatgat tcttatttta tctttggcta tgagtttgca
     1081 aatcatgatg ccaaaagaac aagcatagtt cattataatg taaacactcc aacatttcaa
     1141 atgagtcata ccatgacaac tctaatggat atgaataaac aaagccattc tgtttttgcc
     1201 ctagactctc atcaatttaa tgatattttt agtatttcag gtggtgcaag atacgaatac
     1261 agtctttatg atacccacag aagttacaca agtaaaatga taatgggcgg tacacaacga
     1321 ccaagtaatc cagagctttt tgactctgat gatacaagca ataactttgc ctttgaaatc
     1381 actccaaatt tcaaatattc tgatactgga aatatatatg ctaaatacga aagaggtttc
     1441 atctctccaa ctcctgcaca acttgttaac aaagatcaag caactcaaaa atattacact
     1501 gccaatttag atcctgaaat ttttgatact ttcgaacttg ggattaatga tttttggtgg
     1561 gatttttatg gctttaattt gactttattt tacactctaa gcaaggatga aatttcttat
     1621 cttggaaatc cacactccac aggaggagca ttttggaaat attataatat cgaccaaacg
     1681 cgtcgtttag gagcggaatt aaaccttcat caatttttat tcaatgatag cttaatcctc
     1741 aaagaaagcc taagctatct tgatgctcaa atttctaaag gtgttaatga cggacttaga
     1801 attccttatg tttcaaaaat caaagccaca gccggagtag aatacgcttg gaataaaaat
     1861 ttatcaagct atatagatct aagctatttt tcaagagcaa aagatggcgg ggttgttgat
     1921 gaaaatacag gaaagatgtc tagaaattct tggattaagg attatttttt aactgatatt
     1981 ggtgtaaatt ataattatag aaatttacaa attctagcag gcattcgcaa tctttttgat
     2041 aagcaatatt acacttatca agacagcaca aatgatcaat atctagccgg aaatggtaga
     2101 aattactatg ttgaatttaa atatgcgttc taaaaatcta gtgattatag ggcttttttt
     2161 agcctatata atcacctgta tcatcgcact ttgcttagga gatgaaaatt taagccctaa
     2221 agaacttctc tcctatgctt ttggtgaaaa tgaaattttg cgtcaaatca tcatcgatgg
     2281 gcgtttgcct cgtattataa tggctatttt aatcggtatg cttttagcta gcagtggagc
     2341 agtaacgcaa aatgtatttt caaaccccat agcagatcct tatatcatag gtatagcttc
     2401 agcagcaacc tttggatctg ttttagcgta tttgttaaaa ctgcctgatt attattatgg
     2461 aattttaggc tttatttgtt ctgctatttt ttcattagcg atctttaaag tatcttcaaa
     2521 agcttccata gctactttac tcatcatagg cattgctgcc tcatcttttc taggagcttt
     2581 tacctcgttt tttacctatc ttatagggga agattctttt aaaatagttg cttggcttat
     2641 gggaaatata ggttcagctt cttggtttcg tataggaatt ttgattttgc ctttgatttt
     2701 ttgtcttatg tatttttatg cgcataaaaa tgaattaaat atcattttaa gcggggatga
     2761 tgaggcaaga aatttaggag ttgatgccca aaaattaaaa atcaaccttt tgatagtttc
     2821 ttctttggca gtttcttttg cggtagcttt tacaggactc atagcctttg taggacttat
     2881 aatccctcat accgtaagac tcttgcttag aaattatgac aatgctttgg ttattccttt
     2941 ttgtaccgct tttggagggc tttttttact catttgtgat actctagcaa ggactctaat
     3001 agcccctgtg caaattccta taggggtttt aaccgcattc tttggagctc ctgtattttt
     3061 atatttggct ttaagtgcta ggagattttt atgatattaa agatacaaaa tttaagtttt
     3121 agctatcata aaaaagaatt gttaaaaaat atcaatttag agcttcaaaa taaagctttt
     3181 ataggtattt tagggcctaa tggctcgggt aaaagcacac ttttaaagct tatactaaaa
     3241 aatttaaata taagtaaggg cgaaatatcg ctttttaata ccaatataaa aaactttgcc
     3301 cttaaagaat ttgcacaact ttgcggtttt gtgcctcaaa attcgggttt aaacacgccc
     3361 ttaaaagtta ttgatgtgct tttaatgagc aaatttacaa atttaaaaca tgctttttgt
     3421 gattattcta aagaagatat tttagaagtt gaaaaatttg caaaaacttt aaaattggaa
     3481 aactttttag aaagaaatat gctttcttta agtggtggag aatttcaaag agtgctttta
     3541 gcaagagcct tgcttaaaaa acccaaaatt ctttttttag atgaacccac ttcagcactt
     3601 gatttaaacc atgctatcga gcttttaagc ctttgcgaaa gattgataaa gcagaacaat
     3661 atcgcagttg tagcgatttt gcatgattta aatttagcct ctatgttttg tgataaggta
     3721 ttgtttttaa aagaaggaga aataaagtat tttggaagta caaaagagct ttttaccaaa
     3781 gaaattctaa aagaaattta taatttaaat tgcgagattg tctataaaga cttaaaacct
     3841 tatatcttag ccttaaagga aaaaatatga aaaaaatttt aatcattatg agtttatttt
     3901 taaccctact taatgccaaa gaacgcattg tagtgcttga tcctgcaagt atagaaacac
     3961 tttttatgct aaatgcacaa gatcaaatcg taggtattgc aaatttgcaa cactcaaata
     4021 tctaccctga agaaaaaact tcaaaaataa ctagcgtagg aactttttca cacccttctc
     4081 ttgaaaaaat agttgcccta aagccaagct tagtgatatt aagctcgtat tctttaaatt
     4141 tagaagaagg gcttaaaaac tttggaatca aaagtatcaa tttaaaagcc caacgccttg
     4201 atgaaatcaa aagcaatatc caaattcttg caaaactcac agacaaagaa gagcaaggca
     4261 aaaaactttt agaagaattt gaacaaggat tacaagaatt gcaaaaaaat cccttaaata
     4321 aaagcggaat ttacctttat tctagtaatc cactcatggc ctttaatgat aattctttaa
     4381 tagcggatat attaagactc ataggcatta aaaacctaag tcctcaaagt gaaatagcgc
     4441 gccctataat ctcagcagaa tacatcctaa aacaaaatcc tgatttgttg atcttaggca
     4501 ttaatgcaga tggcaacatt ttaaatgcta atgctttgtt aaaaaataca aaggcagctc
     4561 aaatgggaca aatttatcac aatgaaaaca ctcatatatt gttacgctta agcccaaaaa
     4621 tcatagatag aattaaagaa tttaaaacaa gattagaaaa tcaaaatttt taatcgctca
     4681 atcttgtttt aaaaaattca cagctttgac aaagcttttc tatacgctta ttttcttcaa
     4741 aggccttttt gatttcttga atgcgtttgg actcaagaag gctcttaaat tcagcattaa
     4801 aaacattacc caaagatata tcgcctttag tatccaaaca acaaggcacg agcgtgccat
     4861 cacttaaaat gcctatttgc tcttttaaag catggcattt tccttgagta taaaggggct
     4921 tatcttttaa acttggccat ttaaaaagct tgttttgatg aagcaaaata tgcctttgaa
     4981 gacgattttt agccaagtgt gtaagaattc gaaccccaaa ttctttactt aaaaattcat
     5041 aaatgggcaa attttcgcta ggggctttaa agttagtatc taaattccaa agtctaagat
     5101 tgataaagct tgatttttta tactctaaat gctctttgca aaactctaaa ataggcttaa
     5161 aatattgctc taaagaaagt ttgctttgac ttaaaaaggc cattaaagag atattgattt
     5221 gatggatatt gtcgtatttt aataacaatt tagaattttt aggactaaaa taaaaaccac
     5281 ttgtggtaat ttctaatttc atttgatgat ttttagcaat ttgtagatat tcttctaaat
     5341 tatttaaaag caaaggatct cccaaaagat gaaaggtaaa aatttcgctt ttatcccaaa
     5401 tttgccttgc aagtttggaa aaattttcta cactcatcac tccacgcaag gctttttttg
     5461 agggacaaaa atcacatttt aaaccgcaaa tatcgcttaa ttctatgtat aattttttaa
     5521 atttcattat gtatccaaga gtatttttta gcaat
//
LOCUS       DBBXRO010000108         5544 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.109, whole genome shotgun sequence.
ACCESSION   DBBXRO010000108 DBBXRO010000000
VERSION     DBBXRO010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5544
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.109"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            10..873
                     /locus_tag="ACJFEZ_001485"
     CDS             10..873
                     /locus_tag="ACJFEZ_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HGG0917588.1"
                     /translation="MATDMNEILLRSVEVLPPLPDTINKLRKYINESGSNVKIDEIAN
                     IISSDPLMTAKLLRLANSPFYGFSREITSLAQVVSLLGIGNIVNTIMADSIRDSFKID
                     VSPYGLSTTEFVNKCSEETSFIMDWLGNEDKKLSHLLVPCSMLLRLGIVVFSNFLIQN
                     KKDAEFLARLEKNNFSDLSMVENEFLGVDHISFLGFLLYRWKFDDMLVETICFARSPH
                     AARNEVKKSAYALSVVDHLFTPHNNFSSFNIKASIALINEARSQGIDFNLDNFISKLP
                     KEAKENLIKEG"
     gene            895..1371
                     /gene="cheQ"
                     /locus_tag="ACJFEZ_001486"
     CDS             895..1371
                     /gene="cheQ"
                     /locus_tag="ACJFEZ_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HGG0917589.1"
                     /translation="MKSIILPPNEFLDHYVLNAEFHRLAGISKNAYKFWKKVEIGRYQ
                     GTRIIFLHKNSILEKHREVLKQCSDLSGFVLASAFCSFTGLAPSHLVKKNNSSIYKLL
                     DLKEIHGIKFVNLKKFYDFLGLNYYQHIYIEKCHFFSPTPFEKRIKITESMCVGYY"
     gene            complement(1340..2650)
                     /locus_tag="ACJFEZ_001487"
     CDS             complement(1340..2650)
                     /locus_tag="ACJFEZ_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917590.1"
                     /translation="MRKILSKKDIKTLGLSSLGGTLEFYDFIIFAFFSSYISKNFFPE
                     NLSPFWQLFNTYGIFAAAYVVRPLGGIVMAHFGDKFGRKKMFMLSILLMVIPTFALAF
                     IPSYESIGYLCVVFLMLIRIAQGISIGGELPGAWIFVYEHSPQGQRRTYIGFLTASVV
                     GGILLGSIVFLLMHKIYTQEELYEWAWRVPFFLGGIFGLISIYLRKFLSETPVFEQMR
                     KENVLEKFPLKEVFKRAKAGVLISMLITWVLTGCIIVMILFIPKYMAEILQFDTNFQT
                     YLQMGGIFFISLGCIISGILADKIGIFKSSIIFSLFFGLACAFYFHFLYNTNADITLV
                     SIFYLLACLFGGVMNFCPLIMNEAFEAKIKFSGLSFSYNIAYAIAGGITPQLTLLLHK
                     FAFANLDNAWRFSLGYYMFLIVLLALLSAFIFRYLNNTQRTYSQ"
     gene            complement(2653..2805)
                     /locus_tag="ACJFEZ_001488"
     CDS             complement(2653..2805)
                     /locus_tag="ACJFEZ_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HGG0917591.1"
                     /translation="MAYDDEDLEFDDYEGEEDEYAHNHHKSYNYDDDDYDFDDEANDD
                     DFYEMD"
     gene            2900..3373
                     /gene="moaC"
                     /locus_tag="ACJFEZ_001489"
     CDS             2900..3373
                     /gene="moaC"
                     /locus_tag="ACJFEZ_001489"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061799 - cyclic pyranopterin
                     monophosphate synthase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HGG0917592.1"
                     /translation="MELTHLDENNRPKMVDVSQKDISKRVATASGMISMSEEAFKAIK
                     NNTAKKGPVLQTAVIAAIMGAKKTSEIIPMCHPLMISKVETDIVEFPKDYTFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKTMKISEIVLESKEGGKSGKFVRS"
     gene            3351..3614
                     /locus_tag="ACJFEZ_001490"
     CDS             3351..3614
                     /locus_tag="ACJFEZ_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HGG0917593.1"
                     /translation="MVNLCDLKQEPIVNYPTFWDYKVIFEAHVHAGALFEELLGQRDF
                     KYKHSNASSSGKYQSFLLSVYVDSKKDRLDIFEKLKAKAKFVL"
     gene            3629..4765
                     /locus_tag="ACJFEZ_001491"
     CDS             3629..4765
                     /locus_tag="ACJFEZ_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917594.1"
                     /translation="MKNTLIIFENSLSNLKKDEVKDLLEDLSFNLAYKQISQDPHSTK
                     KILNSLLVEFLTILKKLDLFDDENVAKVIKALVKASVGDAQNVLYEYISEAELLNKQI
                     ENQKNLIKNQISDNFLEFENILQECSFCDEFSSGLNDAILFDIEMLGILKETAESAFL
                     TTLEKAEDIELTSSEIAKSLVYNAICEAHFEKERILKISSIILNTAFEIANESIAYAK
                     DLCLGAIKGTRDGISLAMEKFKTTLAYAKFEEDVSLKSKELIGIEDDFIALLKREIKE
                     QKNPSKDIVENLLEHELDNLFAKFKRLAVESREQLLLVLNDIKKNPKINDFNRLTQRK
                     LHRFKQEILELEKVAGEKYKELNSKKAKKLGVRLWERAKKLIKK"
     gene            complement(4783..5541)
                     /locus_tag="ACJFEZ_001492"
     CDS             complement(4783..5541)
                     /locus_tag="ACJFEZ_001492"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HGG0917595.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIIKENIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYSNSAKRAGYSGVMSLCNFDSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLSFKMKFYAKFLVYLEKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDY
                     FFISTGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
BASE COUNT         2029 a          819 c          855 g         1841 t
ORIGIN      
        1 ggaaaatata tggcaactga tatgaatgaa attttacttc gaagtgttga agttttacct
       61 cctttgcctg atactataaa taaactaaga aaatatatca acgaatcggg ttctaatgta
      121 aaaattgatg aaattgctaa tattatttca agtgatcctt taatgactgc taagctttta
      181 cgcttggcta attctccctt ttatggtttt tcaagagaaa tcacctcttt ggctcaagtt
      241 gtctctcttt tgggtatagg taatatcgtt aatactatca tggcagattc aattagagat
      301 agttttaaaa tcgatgtatc accttatgga ttaagcacga cagaatttgt aaataaatgc
      361 agcgaggaaa cttcttttat catggattgg ttgggcaatg aggataaaaa gctatcgcat
      421 ttactagtgc cttgttctat gcttttaaga cttggtattg tagttttttc taattttctt
      481 attcaaaata aaaaagatgc cgagttctta gctagattgg aaaaaaataa ttttagtgat
      541 ttatctatgg tagagaatga atttttaggt gttgatcata tttcattctt aggatttttg
      601 ctttatcgtt ggaaatttga tgatatgcta gttgaaacta tttgttttgc tcgctctccg
      661 cacgcagcta gaaatgaggt taaaaaatca gcttacgctc tttcagttgt tgatcatctt
      721 tttacacctc ataataattt ttcttctttt aatatcaagg cttctatcgc tttgattaat
      781 gaggctcgaa gtcaagggat tgattttaat cttgataatt ttatttcaaa acttccaaaa
      841 gaagctaaag aaaacctaat aaaagaaggt taaattgttt attttattaa attaatgaaa
      901 agtatcattt tacctcctaa tgaattttta gatcattatg ttttaaacgc ggaatttcat
      961 cgtttagctg gaatttcaaa aaatgcttat aaattttgga aaaaagtaga aattggtaga
     1021 tatcaaggga ctcgtattat ttttttacac aagaattcca ttttagaaaa acatcgagaa
     1081 gttttaaaac aatgtagcga tttaagtggt tttgtgctag caagtgcttt ttgttctttt
     1141 acgggattag ctccatcgca tcttgtaaaa aaaaataatt cttcaatcta taaactttta
     1201 gatttaaaag aaattcatgg tattaaattt gtaaatttaa aaaaatttta tgatttttta
     1261 gggctaaatt attatcagca tatttacata gaaaaatgcc atttttttag ccccacgcct
     1321 tttgaaaagc gtataaaaat cactgagagt atgtgcgttg ggtattatta agatatctaa
     1381 aaataaaagc tgataataaa gccaataaaa cgattaaaaa catataataa cccaaagaaa
     1441 aacgccacgc attatctaaa tttgcaaatg caaatttatg taataaaagt gtaagttgag
     1501 gggttatacc tcctgcaatg gcataggcga tattataaga aaaagaaagt cctgaaaatt
     1561 taatctttgc ttcaaaagct tcattcatta ttaaaggaca aaaattcatc actccaccaa
     1621 aaagacaagc tagcaagtaa aaaatactga ctagagttat atcggcattt gtattgtaaa
     1681 gaaagtgaaa ataaaacgca caagctaagc caaaaaacaa ggaaaaaata atactagatt
     1741 taaaaatacc tattttatca gctaaaattc cacttataat acaacccaaa gaaataaaga
     1801 aaattccacc catttgtaaa taagtttgga aattggtatc aaattgtaaa atttctgcca
     1861 tatattttgg gataaataaa atcattacaa taatacaacc tgttaaaacc caagtgatta
     1921 gcatagagat aagaacacct gcttttgctc ttttaaatac ttctttaagc ggaaattttt
     1981 ctaaaacatt ttcttttctc atttgctcaa aaacaggagt ttcacttaaa aattttctaa
     2041 gatatattga aataagtcca aaaattccac ctaaaaagaa aggaactctc caagcccatt
     2101 cgtataattc ttcttgagtg taaattttgt gcatcaataa aaatactata cttccaagta
     2161 aaattccacc caccacagaa gctgttaaaa agcctatata agttcttctt tgtccttgcg
     2221 gtgaatgctc atatacaaaa atccaagcac cgggtaattc tcctcctatg gaaatacctt
     2281 gagctattct tataagcatt aaaaatacta cacaaagata accaatactt tcataagaag
     2341 ggataaaggc cagtgcaaaa gttggtatta ccataagcaa aatacttagc ataaacattt
     2401 ttttgcgccc aaatttatcg ccaaaatgtg ccatcactat accgcctagc ggtcttacta
     2461 cataagctgc tgcaaatatg ccataggtat taaaaagttg ccaaaaaggg cttaaatttt
     2521 cagggaagaa gttttttgaa atataacttg aaaagaatgc aaagataata aaatcataaa
     2581 attccaaggt tccacctaaa gatgaaagtc ctagcgtttt tatatctttt ttactaagaa
     2641 tttttctcat ttttaatcca tttcataaaa atcatcatca tttgcttcat catcaaagtc
     2701 ataatcatca tcatcataat tataggattt gtgatgattg tgagcatact catcctcttc
     2761 accttcataa tcatcaaatt ctaaatcttc atcatcataa gccattattt actccttgat
     2821 aaacaaaata aaatctaatt ttagcttaaa tttgattgct tttgctataa ttttttatat
     2881 tttttaaaaa aggttgatta tggaattgac tcatttagat gaaaacaacc gccctaaaat
     2941 ggtagatgta agccaaaaag atataagtaa aagagtggct acagcaagcg gtatgatcag
     3001 tatgagcgaa gaagctttta aggctataaa aaacaatact gctaaaaaag gccccgtact
     3061 tcaaactgct gttatagcag ctatcatggg tgctaaaaaa acaagtgaaa ttatccctat
     3121 gtgtcatcct ttgatgattt ctaaggttga gacagatata gttgaatttc ctaaagatta
     3181 tacttttaaa cttatagtaa cggtaaaatg cgagggtaaa acaggggtag aaatggaagc
     3241 tttaagcggc gttagcatag gacttttaac tatctatgat atgattaaag ccatcgataa
     3301 aacaatgaaa ataagtgaaa ttgtacttga aagcaaagaa gggggtaaaa gtggtaaatt
     3361 tgtgcgatct taaacaagag cctattgtta attatcctac tttttgggat tataaggtga
     3421 tttttgaagc gcatgttcat gcaggagctt tgtttgaaga gcttttggga caaagagatt
     3481 ttaaatacaa acattctaat gcaagttcta gtggaaaata tcaaagtttt ttactcagtg
     3541 tttatgtaga tagcaaaaag gatcgtttgg atatttttga aaaattaaaa gctaaagcca
     3601 aatttgtgct ttaagaaaga gggattaaat gaaaaatact ttgattatat ttgagaattc
     3661 tttatccaat ctcaaaaaag atgaagtgaa agacttgctt gaggatttaa gttttaatct
     3721 tgcgtataag caaatttcac aagatccaca cagcactaaa aagattttaa attcactttt
     3781 ggttgagttt ttaaccattt tgaaaaaact tgatttattt gatgatgaaa atgttgcaaa
     3841 agttatcaaa gctttggtaa aagctagtgt aggagatgct caaaatgtcc tttatgaata
     3901 catcagcgag gcagaattat taaacaaaca aatcgaaaat caaaagaatt taattaaaaa
     3961 tcaaatcagt gataatttcc ttgaatttga aaatatctta caagaatgtt ctttttgcga
     4021 tgaatttagc agcggattaa atgatgcgat tttatttgat atagaaatgc ttggaatttt
     4081 aaaagaaact gctgaaagtg cttttttaac tactcttgaa aaagctgaag atatagaact
     4141 tactagcagt gaaattgcca aaagtcttgt ttacaatgct atttgcgagg cacattttga
     4201 aaaagagcgt attttaaaaa tttcaagtat tattttaaat acagcttttg agatagcaaa
     4261 tgaatctata gcttatgcta aagatctttg tcttggtgcg attaaaggga ctagagatgg
     4321 aatttcttta gctatggaaa aatttaaaac tacacttgct tacgcaaaat tcgaagaaga
     4381 tgtgagttta aaaagtaaag agttaatagg catagaagat gattttatcg cacttttaaa
     4441 aagagaaatt aaagaacaaa aaaatccatc aaaggatata gttgaaaatt tattagagca
     4501 tgagcttgat aatctttttg ctaaattcaa acgccttgct gttgagagta gggagcaatt
     4561 gcttttggtt ttaaatgata tcaagaaaaa cccaaaaatc aatgatttta atagactaac
     4621 tcaaagaaaa ctgcatcgct ttaagcaaga aattcttgag cttgagaaag tagcagggga
     4681 aaaatacaaa gaattaaatt caaaaaaagc taaaaagtta ggcgtaagac tttgggaaag
     4741 ggcaaaaaaa ctcattaaaa aataatatcc cattttggga tattaaatat ctatttctat
     4801 gcctacaggt gcgtgatctg aaccaaaaat atcatctctt atgaaagcat ttttcagctt
     4861 gtcttttaaa cctgttgaaa tgaaaaaata atcgattctc cagcccacat ttctttctct
     4921 tgccttcatt ctataactcc accacgagta tttttctttg atatcgccat tgatctctct
     4981 aaaagtatca ataaaaccaa gttttagcaa atcatcaatc caagctcttt ctatcggtaa
     5041 aaatcccgag gtattggcat ttgcctttgg atgggtaaga tcgatttctt tgtgtgcggt
     5101 attgacatca ccacaaatga taatttcaaa gccatccttt aaaagttttt ctaaatacac
     5161 caaaaatttc gcataaaatt tcatcttaaa gcttaaacgc tcttcatctt tttgtccatt
     5221 tggaaaatag atattaaaaa gtgctatgtt tttaaaacga tgttctaaaa ctctgccttc
     5281 ttcatcatca aaaaattcac attttttaac ttcactatca aaattgcaaa ggctcataac
     5341 acccgagtat ccagcccttt tggcagaatt agaatacata tgcttaaaag ggtattcata
     5401 aattttttta ggaaatttat cttcatgtgc tttaatttct tgaaaaccta taaaatcaat
     5461 attttctttt attatccaat caagcgcatt tttatcacaa atagctctta agccattgac
     5521 attccatgaa agtagtttca tcag
//
LOCUS       DBBXRO010000109         5481 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.110, whole genome shotgun sequence.
ACCESSION   DBBXRO010000109 DBBXRO010000000
VERSION     DBBXRO010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5481
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.110"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(81..185)
                     /locus_tag="ACJFEZ_001493"
     CDS             complement(81..185)
                     /locus_tag="ACJFEZ_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917596.1"
                     /translation="MTALDIFQIIFIFVVVLIGFVGMIWVISKDKSNR"
     gene            complement(182..1252)
                     /gene="rlmN"
                     /locus_tag="ACJFEZ_001494"
     CDS             complement(182..1252)
                     /gene="rlmN"
                     /locus_tag="ACJFEZ_001494"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HGG0917597.1"
                     /translation="MKELINILDFLPEELEEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLSKDLRLELAQTYHFTPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDD
                     EGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIEELGEM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTI
                     RESKGLDISAACGQLKERAKEL"
     gene            complement(1272..1808)
                     /locus_tag="ACJFEZ_001495"
     CDS             complement(1272..1808)
                     /locus_tag="ACJFEZ_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HGG0917598.1"
                     /translation="MIVCAGGNENFSFAKTIGIGLVESTFHLTQLCLKEKPSKLIFIG
                     TCGLYDKGEILGIYKSSHACNIEFSYISDQFYTPANTEIKLNKQNVSRETIKVNSSNY
                     ICQNSKAAKEFAKLGFFAENMEAFSVLSVAKNLDIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKINHYI"
     gene            1894..2688
                     /gene="rsmA"
                     /locus_tag="ACJFEZ_001496"
     CDS             1894..2688
                     /gene="rsmA"
                     /locus_tag="ACJFEZ_001496"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HGG0917599.1"
                     /translation="MMKAKKHYGQNFLNDKSILSKIIQAIPKDTENIVEIGPGLGDLT
                     QELLKVSHVKAYEIDDDLIPILRKKFQKELDCGKLNLLHQDASKLACFDEKKYFLVAN
                     LPYYVASHLILQALEDKNCSGLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREI
                     LFDVEPECFNPPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKI
                     HKAKLTELFQELKLNLNLRPHELCVDSYLKIYEKVKEEYERKQQRK"
     gene            2663..4693
                     /locus_tag="ACJFEZ_001497"
     CDS             2663..4693
                     /locus_tag="ACJFEZ_001497"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HGG0917600.1"
                     /translation="MNENNKGNSENTNNPNSNSKNNKRYKYRNRRKKLADSISENSQN
                     STHEFSNNEKINTKKNSTNTQPLEGENVEKPSEKKKKRNRNLPSKLTGNEDWQIALAE
                     CIEANRVSHENRLHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMS
                     FPDGTMHGVDIIIPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPL
                     ALGMISNKFEEHGLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKA
                     GTIIHTGDFKIDQTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGP
                     TFDQIFARTKGRVIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGY
                     IKLDRKIFIDADEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPSDQIII
                     SAKAIPGNEASVSAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLVKPKFFL
                     PVHGEYNHINKHKETAIKCGIPEKNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQ
                     INKQIADDVVIDRQKLADSGIVVIIAQLDKASKTLINKPRVFSYGLVADKQDHAFSKE
                     MAEVLGQFFVNVKDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            4735..>5481
                     /locus_tag="ACJFEZ_001498"
     CDS             4735..>5481
                     /locus_tag="ACJFEZ_001498"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HGG0917601.1"
                     /translation="MRINKFISHNSPYSRREADELIKQGLVKINNKIALLSDEVKTND
                     KVFVKGKALRKKTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDF
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKYRYLENGEYEKLRDFLKFN"
BASE COUNT         1942 a          871 c          951 g         1717 t
ORIGIN      
        1 gatatttaaa tttatcaaag cgcacatcgt tttatttata aatttaaata tcttaaaatt
       61 tcaataaaag atttattcaa ttagcgattg cttttatctt tagaaatcac ccaaatcata
      121 cccacaaaac ctatcaacac aacgacaaat ataaaaatga tttgaaaaat atccaaagct
      181 gtcataattc ttttgccctt tctttgagtt gtccacaagc tgctgaaata tcaagtccct
      241 tgctctctct tatggtgcaa gttactcctt tagcgcttaa taaatcttga aatttgatcg
      301 cattttcaag cttaggacga tgataaatac taccctcgtg aggattgaaa agtatcaaat
      361 tcactttggc ttttatacca tttaaaagct tgaccagttc ttttgcgtgt tcaagtttat
      421 cgttaatgcc atcaatgagt aaatactcaa acattactct ttttctttga tctataggaa
      481 aagcacgcac agcatccatg atcgcagcta tattataagc tttatttata ggcatgagtt
      541 cggttcggag ttcatcatta accgcgtgaa gggagatggc aagcaagacg cctaaattca
      601 tttcacccag ctcttcgatt tgctttgcta aaccacttgt gcttatggtt tgtctgcgag
      661 ggctgatagc aagtccatca ttttgagaga gaattttaac tgccttggaa acatttttaa
      721 gattgtcaag aggttctccc atgcccatat agactatatt gacacgacgc tcatagggga
      781 tattgttttg ttttttgatc cataaaatct gtccgactat ctctcccgcg ctcaaatttc
      841 tttttaagcc tcctttggca gtaaggcaaa aactacagcc acttttacag cctacttgag
      901 aagaaacgca aatagtatat cttgtatgtg aaattctttt accttcatcg tcaaattgtt
      961 cttctttcat aggcaaaagt acactttcta tccttaagcc atcgataagt tcaaaaagat
     1021 atttgatact tccatctttg ctttgttcat ttttaacgca tttaagagga gtgaaatggt
     1081 aagtttgcgc aagttctaaa cgcaaatctt ttgatagact tgacatatcg gaaaaattat
     1141 tcgcatattt ttgatatatc cattgataaa tttgtttcac gcgaaacata ggtttgattt
     1201 tttcttccaa ttcttcaggt aaaaagtcta agatattaat gagttctttc aagattactt
     1261 tcctttgatt gctaaatata atgattaatt tttaaatatt cttctagttt ttcctttgcc
     1321 ttttgatgat tttttataaa atcttcatga gcattttcat tgcaaaaatt agtcgcacat
     1381 aaaatacatt ctgcatctat atctaaattt ttagccacac ttaaaaccga aaaagcttcc
     1441 atattttcag caaaaaaacc cagttttgca aattcttttg ccgcttttga attttggcaa
     1501 atataattag aagaattgac tttgattgtt tcacgagaaa cattttgctt attgagtttg
     1561 atttcagtat ttgcaggagt atagaattga tcagaaatat aagaaaattc aatattgcaa
     1621 gcatgagaac ttttataaat tcctagaatt tctcctttat cataaagccc acatgttcct
     1681 ataaatataa gttttgaagg tttttctttt aagcaaagtt gtgttaaatg aaaggttgat
     1741 tctactaaac ctatacctat ggttttggca aaagaaaaat tttcatttcc acccgcacaa
     1801 actatcattc acatatccta aaaataattt agcaagaatt ttagctaaaa aggcttaaaa
     1861 ttaagaattt ttagctaaaa taaaaaacta tatatgatga aagcaaaaaa acattacgga
     1921 caaaattttt taaacgataa aagtatttta tcaaaaatca tccaagccat acccaaagat
     1981 actgaaaata tagtagagat tgggcctggc ttaggtgatt tgacgcaaga gcttttaaaa
     2041 gtttctcatg taaaggctta tgagatagat gatgatctta tacctatttt gcgtaagaaa
     2101 tttcaaaaag aacttgattg tggaaaatta aatttgcttc atcaagatgc aagtaagctc
     2161 gcatgttttg atgaaaagaa gtattttttg gtcgctaatt taccttacta tgtcgcaagt
     2221 catttgattt tgcaagcctt agaggataaa aattgctcag gtttgatagt aatggttcaa
     2281 aaagaaatgg cattgaaatt ctgtgctcat agtggagaaa gtgatttttc agctcttgga
     2341 gttttaagtg ctatgatttg tgaacgagaa atactgtttg atgtagagcc tgaatgtttt
     2401 aatccaccgc caaaagtagt atcagcagtg atgaaaatga ttaaattcag agcttatcag
     2461 gatctctgtg aaattcatgc ttttaaagct tttttgaaag attgttttaa agcgccaaga
     2521 aaacaattat tagggaattt aaaaattcat aaagctaaat taacagagct ttttcaagag
     2581 ttaaaactca atttaaattt acgcccacat gaactttgcg tcgattcata ccttaaaatt
     2641 tacgaaaaag taaaggaaga atatgaacga aaacaacaaa ggaaatagtg aaaatacaaa
     2701 caatcctaac tcaaattcaa aaaacaacaa gcgctataaa tacagaaatc gtagaaaaaa
     2761 attagccgat tctatcagtg aaaattctca aaattcaact catgaatttt ctaacaacga
     2821 aaagataaat accaagaaaa attctacaaa tactcaacct ttagagggtg aaaatgtaga
     2881 aaaaccaagt gagaaaaaga aaaaaagaaa tcgcaatctc ccttctaaac ttaccggaaa
     2941 tgaagattgg caaatcgcgc ttgctgagtg tatagaggca aatcgtgttt cacatgaaaa
     3001 tcgcttacat cctttaaaat acaataattc tagcgagcat aaaattcgca tcactccact
     3061 aggtggctta ggggaaatcg gtggaaatat cagtgttttt gaaaccaata aagatgcaat
     3121 tatagtagat ataggtatga gttttcctga tggaactatg catggggtag atattatcat
     3181 ccctgatttt gattatgtaa gaaagattaa agataaaatt cgtggtatag tgatcactca
     3241 tgcacacgaa gatcatatcg gtgcagtgcc ttatttcttt aaagaattcc aatttcctat
     3301 ctacgctaca cctttggctt taggaatgat ttcaaacaaa tttgaagaac atggcttaaa
     3361 agcagaacgc aaatggtttc gccctgtaga aaaacgccgt gtttatgaga taggcgaatt
     3421 tgatatagag tggatccaca tcacgcattc tatcattgat gcttcagcac ttgcgatcaa
     3481 aacaaaagca ggaacgatta tccacacagg tgattttaaa attgatcaaa ctccaatcga
     3541 tggctatcca acagacttag gacgtttggc acattatgga gaagaagggg ttttatgtct
     3601 tttaagcgat agtacaaatt cgtacaaaga aggttataca aaaagtgaaa gctccgtagg
     3661 gccaactttt gatcaaatct ttgcacgtac caaaggtagg gtgatcatga gtacttttag
     3721 ctcaaacatc caccgtgttt atcaagctat tacttatggt ttaaaatacg gcagaaaagt
     3781 ttgtgttatc ggtcgttcta tggagagaaa tctttatacc actatggaat taggttatat
     3841 taagctcgat agaaaaattt ttattgatgc agatgaggtt agcaagtata aagacaatga
     3901 agtgcttatc gtaaccacag gaagtcaagg tgaaactatg agtgcgcttt atagaatggc
     3961 aacagatgag cataaattta taaaaataaa gccaagcgat caaatcatca tttcagctaa
     4021 agctatccca ggcaatgaag cgagtgtttc agcggtgctt gattatcttt taaaagcggg
     4081 tgctaaagta gcgtatcagg aatttagcga aattcatgta agcgggcatg caagtataga
     4141 agagcaaaaa ttaatgctta ctctagttaa gcctaaattc ttcttgccag tacatggaga
     4201 atacaatcat atcaataaac acaaagaaac agctataaaa tgtggaattc ctgaaaaaaa
     4261 tatttatctc atgagcgatg gcgatcaagt agaactttgc caaaaatatg tcaaacgcat
     4321 aaaaaccgta aaaacaggta aagtttttgt agataatcaa atcaataaac aaatcgccga
     4381 tgatgtagta attgatcgtc aaaaacttgc agatagcggt atagttgtca tcatcgcaca
     4441 gcttgataaa gcaagtaaaa cattgattaa taaaccaaga gtatttagct atggacttgt
     4501 agcagataaa caagatcatg ctttttctaa agaaatggca gaggttttag gacaattttt
     4561 tgtcaatgtt aaagatgaag tgcttaatga tccaagattt ttggaaaatc aaattcgtca
     4621 agtattgaga aaacatattt ttagaaagat taaaaaatat ccaaccatag ttccaactat
     4681 ttttgtaatg taaaataggg cgtttttcgc ccttaaattt tcataggaat tcaaatgaga
     4741 atcaataaat tcatatcaca caatagccct tattcacgcc gcgaagctga tgagcttatc
     4801 aagcaaggtt tggtaaaaat aaacaacaaa atagcccttt taagcgacga agtgaagaca
     4861 aacgataaag tctttgttaa gggcaaagct ttgcgtaaaa aaacgcaatt tagcgtgata
     4921 atctaccata aacaaaaagg tgaaattgtc agtaaaaaag acgatcgtgg aagaaaaact
     4981 atatatgata ccttgccaag acaatttagt acttggctta gcgtaggaag gcttgacttt
     5041 gctagcgaag gcttactttt gcttacagat tctcctgtga ttgccgatgc tttaatgcat
     5101 agcgatttag aaagagaata ctaccttaaa gttaaaggca cggtgagcaa acaagtcatc
     5161 gaagccatgc aaaatggact tgagattaaa aatgaaaaaa aaggcgcaca tgcaaaaact
     5221 aaaattacct ctatgagttt tgctcctttt atagactttg aaatttttgg atcaagtgga
     5281 ggctatacta agcttagagt ggttataaat gaaggtaaaa atagagagct tagacgcttt
     5341 tttggacatt ttgatcttga agtcatggat cttaagcgtg ttgcttttgg ggctttagat
     5401 cttggtatgt tgaaggcggg aaaatatcgt tatttagaaa atggcgaata tgaaaaatta
     5461 agagattttt taaaatttaa t
//
LOCUS       DBBXRO010000110         5441 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.111, whole genome shotgun sequence.
ACCESSION   DBBXRO010000110 DBBXRO010000000
VERSION     DBBXRO010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5441
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.111"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..383
                     /locus_tag="ACJFEZ_001499"
     CDS             <1..383
                     /locus_tag="ACJFEZ_001499"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0917602.1"
                     /translation="LEYKNENTLELFEAFANESEHLKYCVNFEVDREEYKKFRQNIHN
                     KENMKWKFNALAKLFSNYFNTLECTPQNDLSEIRQKYLILVKLYHPDFHQGKSAIEKA
                     YAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(407..3424)
                     /gene="cmeF"
                     /locus_tag="ACJFEZ_001500"
     CDS             complement(407..3424)
                     /gene="cmeF"
                     /locus_tag="ACJFEZ_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HGG0917603.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSTAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRIDG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSNIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGFSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(3427..4167)
                     /gene="cmeE"
                     /locus_tag="ACJFEZ_001501"
     CDS             complement(3427..4167)
                     /gene="cmeE"
                     /locus_tag="ACJFEZ_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HGG0917604.1"
                     /translation="MKKILFLLLAFNYAFGEEIYASFNVEASKQSKLTLESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLIKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(4164..5438)
                     /gene="cmeD"
                     /locus_tag="ACJFEZ_001502"
     CDS             complement(4164..5438)
                     /gene="cmeD"
                     /locus_tag="ACJFEZ_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HGG0917605.1"
                     /translation="MLEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESKEKLSLLDKEQSKNYLALNAITLYFNTLSLKKILLANQQKVAFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FVNLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
BASE COUNT         1792 a          853 c          795 g         2001 t
ORIGIN      
        1 ttttagaata taaaaacgag aatacccttg aactttttga agcttttgca aatgagagcg
       61 agcatttaaa atattgcgtg aattttgaag ttgaccgcga agagtataaa aaatttcgcc
      121 aaaatattca caataaagaa aatatgaaat ggaaatttaa tgctttagct aagcttttta
      181 gtaattattt taatacttta gaatgcactc cgcaaaatga tcttagtgaa atcagacaaa
      241 aatatttgat tttggtaaaa ctttatcatc ctgattttca tcaaggaaaa agtgcaatag
      301 aaaaagctta cgcaagagaa cagtttgaaa aaatacaaat cgcctatgat aacttaaaag
      361 cactttataa gaataatact taaaaaaatt aaattaatca ttttggttaa tttaattttt
      421 ctctctcata aatttttctt aatttgctat ctagtttaaa acaaaattta aaaagtgcag
      481 gtactacgag taaggtaagc aaagtcgaac ttataagtcc aaagataatg gctattgcca
      541 taggagaatt agcttcatag cccgcacccc ttgaaagagc aagtgggagc atagcaaaaa
      601 tcatagcaaa agttgtcatc aatatagccc ttaagcgcga ttttccagcg attaaaagag
      661 ctttatcggg atctaaacct tcatggcatt ttttattagc tacatctacg agtaaaatag
      721 catttttccc taccatacca aaaagtaaga tgatggcaat aagtacaaaa agtgaaaaat
      781 tatgccctgt gataaaaagc cctatagaag ctccgccaaa ggctaaaggc atggttatca
      841 tgatgattaa aggcagaata aaactttcat aaagtgcggc taaaacaaga taaattaaaa
      901 caaaagcaag tgctactgcc atagcaaaac cttgcacggt ttcacctaaa agattgataa
      961 agcctgaaaa agcatagcta agacttggat tgttatttaa aattttatcc atattatcta
     1021 gtaaaagttt ttgcaccgct cctaaggaaa gatcattcac tccagctgtg attttcacag
     1081 agcggttttt attgtaacga ttgatagttt ttaaatcttt actgtatata aaatccacca
     1141 cgcttgaaag ttctaaattt ataccttggt tgtttttaat gctaatgcgc tttaaagctt
     1201 ctatgtcttt tttaaattct ggagcaaaac ttaggataat atcatctttt gaattgcctc
     1261 tatccatgct tcctacgcta agttgcgaga aagaataccc taaaacccca gcgatatatt
     1321 gaggattgac atctaaaagt ttggcttttt ctttgttgat gtgtaaggct acttcatctt
     1381 ttgtagcatt agcattatca cttatatcta caatgcgtgc attagtacct aaaatttctt
     1441 ttgcctgaga agcagcttct tttagagtgt ttaaatcatc tcctaagatt aaaaattgca
     1501 cgggatcatc aatgcctgca ccctctatct ttggaagttc taaaattttg atttttaaac
     1561 tttcatcttg aaatttttga cgatataaac ttactatggc actttgtctt aaatttcttt
     1621 cgtctaaatt tttaagttta acataaattt tagcctttgt agcatctttg gcatcatcat
     1681 agcctacaag taaaaaagcg tatttgacat tgctatcatt tttgattttt tcaagcaaat
     1741 ttaaactttt ttctttcatg gcttctaaac ttaaatcctt tttgctttca agcaaaactt
     1801 gaatttcact atcatcttcc ataggtaaaa aatcaagccc tatgcgagtg gctaaagcaa
     1861 aagaaaaccc tataaaaaca agagtggcta ggataaattt tactttattt tgtaaaattt
     1921 tatagagtaa attttcatac ttttgctcta ttttttcaaa aaaagcttct gttttttcat
     1981 aaaacttgtt ttcttttgga tttaaaaatc ttgccccaat actaggtatt aaaaatacag
     2041 aaaccaaaaa gcttataact atcccacttg caacgcttat gcctaaggca ttgaaaaaaa
     2101 gccctgatat agagttcata taagaaatag ggataaaaac acaaagtaaa actatactta
     2161 tgcttaaaac gctaaaacct atttcattga tacctaaaaa agcagcttgt aaaggcggat
     2221 aagtttttag ttttttagca atattttcaa tcactactat agcatcatcg ataaaaattc
     2281 ctatgcttaa ggttaaagct ataaaagtta agcggtttaa atcatagcct aaaagatcga
     2341 taataaaaaa agttgaaatg atagaagtag gtatagctat gcaagcaatg agagttgcac
     2401 ttaaatttct taaaaataaa aacacgataa caagggttag aaaaatcccc aaaaccatat
     2461 caaaaatcac ttgagaaagg tgcttgtgga tatttaagct tttatcataa agcatattaa
     2521 tgcttatatc ttttggaatt tgtttttcta aaataggcaa ggcatttttg acatttttaa
     2581 tcatttcaag ggtgttataa tttgtgattt ttccgagttc taaaagcacc ccttctttac
     2641 cttcgtataa agcactttgt ttttcatctt cataaaggct tgaaatatta gcaatattac
     2701 ttaaaaatac tcctgttttt atgcgaagat tgctaagttc ttctaaattt gtggcttcaa
     2761 aatagccttt gatgatatag ttatcttgat tgttgttaag ttcacctagg gcttgtttaa
     2821 aattttgact tttgatgata tttgctacat caagggcgtt aagattgtat tttctaagtt
     2881 cgtttggttt taattctatg cgaatttggg gttctaaaaa ccccttagct tcgatttttc
     2941 ctaccccatc aatcctttgc aaaaaaggct tgattttatc attaatttca cgcatgagtt
     3001 gtaatttatc tttagaatat agaaaaagtg aaatagcaga accagaatct gaactgattt
     3061 tttcaatttc aggcttagaa ggtaggctta aagttcctat tttatcacgc acatcattgg
     3121 cagctacttc aagattttta cccagtttaa actcaactac acttacacta aaattatcat
     3181 atgcagttga ggttatggtc tttactccat cgatttcact taaagcattt tctatttctt
     3241 tagtgacttt tgattctacg aaatttaaat ccccatttat cttgcttgtg atttttataa
     3301 gaggtatgga aacattagga aataaattta cactcatgct aaaagcagag attagcccaa
     3361 aaatcataag agctaagaaa aacattagca cggtaatagg tcggtttata gctagtttaa
     3421 acatttttaa tctttagtga tgattctacc ttcaccaaaa agccctggtg ttagatttgt
     3481 ggtttgcact tcagcataaa tttttcttgt ttttacttct atacttggat aaataaggct
     3541 gatttttcct ttcaattctg taccattttg atcgatttta taaaagaaat catcgcctaa
     3601 tctaacttta tctttatatt tttcatcaaa acttaaaatc agtttgcttt gtggatagga
     3661 aaaaatttct atcaaaggtt gagctactcc tcctactcct tcgcccactt gtataaattt
     3721 gtttgcgata atagcatcat aaggtgcacg caattctttt tttgccatga tatttttata
     3781 ataagctata ttgatttttg ctttgattaa atttaaatta gctgcatcaa atttagcttt
     3841 catatcttca tagctttgtt tgtctataac attttctaca gctttgattt tttgcattct
     3901 acttttagta ttttcgtatt ctacaagggc aagttgataa gaattttgag cattttgaag
     3961 agctattttt tcactttctt gatcaagagc aagtaaaagt tctcctttgc tgactttttg
     4021 tccaatttct acaggaattt tttgaactaa acctatgctt tcaagggtaa gcttgctttg
     4081 ttttgatgct tctacattga aactcgcgta aatttcttcg ccaaaggcgt aattaaaagc
     4141 aagaagtaaa aatagaattt ttttcattct ttaacctttg aattaagatc tatacccgca
     4201 ttaaaataat aatttgcttt agtaatttca aattcatttt tagcaagctc taaatcgctt
     4261 tgtgctttaa atttagcctc taaagcttga agatattcca cataagaaac aagtcctgct
     4321 tggtattttt tatctacact ttcaaaagcc aaatttgcag catttaagct aagattaaga
     4381 gctaaaattt gttcttgtaa aacttttaaa cttttgtcta aataatttaa ttcttcttta
     4441 ttttttctct cactaaatct tgcgtttgca ttggctattt gaacgtttaa acgctctttt
     4501 tcaacttctt tagcccttgc attgaaatca aaaattttcc attccatacc taaaataaac
     4561 tgattacctt gagaatattt ttctaagaat tgatctgcta agtttacaaa aggagctgga
     4621 acttttggat tataattgtt tttataaaag ttaaaattat cttgaatata aaattttgga
     4681 aaatattcag cttttgctaa atttacactt tctttagcaa gattgatttg ttctttagct
     4741 atcattactt catagttttg acttttttct tgttgcggat tttctaaaaa agcattccct
     4801 tgcactttaa aatctgtatc acttaaaatt ttaatctctt tttgtatatt ggcaagtttt
     4861 aattcatttt gactgagctc taataagctt aaatggtatt tagctttaat gctttcaagt
     4921 tcatctttag ggctaagtcc tgcgtcgtaa aatttttgca atctttcaaa agttgatttt
     4981 aaaaaagcta ctttttgttg atttgctagt aaaatttttt taagacttag ggtgttaaaa
     5041 taaagtgtga ttgcatttag ggcaaggtaa tttttgcttt gttctttgtc taaaaggctt
     5101 aatttttctt tgctttctaa agctcttaaa ttagcctctc tagcaccccc atcaaaaagt
     5161 aaaaaattaa gagaaacttt agcaaataaa ctttcttgtg gatcgataat gaagcgatct
     5221 ttattgttgg ctacataagc tgagtttaga ctaagagagg gtaggtaatt tctaaaagct
     5281 tgttctttgt ctaaatttgc ttgttcgctt tgcatttgct taatgagata ggattcatta
     5341 ttttgactta gtgctataaa ttcgtgcaaa ttagaagcta acattgctaa gggataaaga
     5401 gctaaaaata tagctgattt taaatatttt tcaagcattt g
//
LOCUS       DBBXRO010000111         5437 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.112, whole genome shotgun sequence.
ACCESSION   DBBXRO010000111 DBBXRO010000000
VERSION     DBBXRO010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5437
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.112"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            81..473
                     /locus_tag="ACJFEZ_001503"
     CDS             81..473
                     /locus_tag="ACJFEZ_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HGG0917606.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHNDVLEAEHGVEAWDLLEKN
                     EDIKILITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGNGDSEAE"
     gene            487..1335
                     /locus_tag="ACJFEZ_001504"
     CDS             487..1335
                     /locus_tag="ACJFEZ_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HGG0917607.1"
                     /translation="MQKFYYELFLEIQEQYKNLFLDFVFDLGVDAIEEKDNGIYIRSE
                     ENLEELAWAIEIFAQKLSQRFNLKENIILHKSIEKKENKDWVEEYKKGIKPILIDNIY
                     IHTTWQEEKENYLNIKINPALAFGSGHHESTYGCVKFLQKFAKNNSRSLDIGCGSGIL
                     AIVMAKLGCKVEICDTDDLAIESALDNAKLNNVNFAQAWHGSVDKAEGLYDLVVANII
                     ADVILILEKDIKKHLEDNAILILSGILDKYKTRVKEKFQDLELIDEMQINEWCSLVYK
                     NKTKEK"
     gene            1335..3281
                     /gene="ftsH"
                     /locus_tag="ACJFEZ_001505"
     CDS             1335..3281
                     /gene="ftsH"
                     /locus_tag="ACJFEZ_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HGG0917608.1"
                     /translation="MNNNNNAPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIVFKGFFD
                     GNGSLGGALNGTEVSKNVPYSELKKLIESGQINQVSIGQTTIKAVSSAQNTVYTTKKV
                     NDPEFVSLLDSKNIAYGAYSETNWFTDILFSWVLPIFIFFGIWMFLASRMQKNMGSSI
                     LGIGSSKKLVNSEKPKVKFNDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLL
                     VGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIV
                     FIDEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLD
                     AALLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLA
                     NIINEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINDKEKKIITYHECGHAL
                     IAETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEE
                     VFIGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLTGGQTIKDYSE
                     KMAESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGAKVRDIIKSYE
                     NENNLPTRLQEINEEHKEESKQAE"
     gene            3281..3895
                     /locus_tag="ACJFEZ_001506"
     CDS             3281..3895
                     /locus_tag="ACJFEZ_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HGG0917609.1"
                     /translation="MGKYITKEGHWFIAIVFILFVICWIFYSFSVLLFLFLLVLLFIF
                     RIPNRVRVCNDSKAILSPIDGRITRIENTFDKYLGESVEISIKNAFYDAGAFYTPFKM
                     DINDIALKHGLFLCSELKSARIMNENVSIFASSNGSNVVLRIYAGSFDRKLKLDNLSH
                     SLTVGDKMGFLINGTISILLPRDTRIHVGLGDELKSGSLLGYLA"
     gene            3905..4630
                     /gene="pssA"
                     /locus_tag="ACJFEZ_001507"
     CDS             3905..4630
                     /gene="pssA"
                     /locus_tag="ACJFEZ_001507"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HGG0917610.1"
                     /translation="MNNNKSQFIYILPNLFTAASAFLGVISIIASIQGNYYMALLYII
                     FSLICDGLDGRVARLTKTTSKFGIEFDSLADLIAFGAAPAIFFYMVIGSEFGRYGSLI
                     TAFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYSYYYYDFLRAYGII
                     FLILQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIVFSFLYLYPLESLVILAS
                     LYVIYGIIRAIYTLIFSKFKMKA"
     gene            complement(4627..5424)
                     /locus_tag="ACJFEZ_001508"
     CDS             complement(4627..5424)
                     /locus_tag="ACJFEZ_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HGG0917611.1"
                     /translation="MQKEFFNELEKILYEQNLDNKFENFAIFYDDFKSQKFIFNHEQG
                     SIFKTNINPALKLLHPTRIRRPKFVNSTHSLAKIVHSIAHIEFSAINLALDASYRFKN
                     LPQQFYIDWLEVADEEIKHFKLLNAALDELGYKYGDFAIHDNLEAALEATKDCLSLRM
                     GVVHRGLEAKGLDANPFVVAKLESSNHPIKSLLKDVLHIILNDEIKHVSKGDNWWKFS
                     NQNNYDFIELCKMFNQFSLAGKKLNIEARIKAGFSKAECEAIAQFYA"
BASE COUNT         1852 a          697 c         1044 g         1844 t
ORIGIN      
        1 aaatttttta gaaacttgat taataaggct aaaaaggata caatatataa aatttatgaa
       61 aattttgaaa ggacgaaatt gtgaaattgt tagttgttga tgacagttct actatgagaa
      121 ggattataaa aaatacccta acaagactcg gacataatga tgttcttgaa gctgaacatg
      181 gagttgaagc ttgggattta cttgaaaaaa acgaagatat taaaattcta attactgatt
      241 ggaatatgcc tgagatgaat ggcttagagc ttgttaaaaa agtaagagca gaaaaaaaat
      301 atgaagatat gcctattatt atggttacta ccgaaggggg caaggctgag gtgattactg
      361 ccttaaaagc aggggtaaac aattatatag ttaagccttt tactccacaa gtattaaaag
      421 aaaaacttga agatgtttta ggtaccggca acggagactc tgaagctgag taatttttaa
      481 taattaatgc aaaaatttta ttatgaactg tttcttgaaa ttcaagagca gtataaaaat
      541 ttatttcttg attttgtttt cgatttgggt gtagacgcta tagaagaaaa agataatggt
      601 atttatatac gctcggaaga aaatttagaa gagcttgctt gggcaattga aatttttgcc
      661 caaaaattaa gtcaaagatt caatttaaaa gaaaatatta tacttcataa aagcattgaa
      721 aaaaaagaaa ataaagactg ggtggaagaa tataaaaaag gaataaagcc cattttaatt
      781 gataatattt atattcatac tacttggcaa gaagaaaaag aaaattatct taatattaaa
      841 atcaatcctg ctttagcttt tggttctggg catcatgaaa gtacttatgg ctgtgtaaaa
      901 tttctacaaa aatttgctaa aaataattca agatctttag atataggctg tggaagcggt
      961 atcttagcca ttgttatggc aaaattagga tgcaaagttg aaatttgcga tactgatgat
     1021 ttggctattg aaagtgcctt agacaatgca aagttaaata atgtaaattt cgcacaagct
     1081 tggcatggtt ctgtagataa ggcagaggga ttatatgatt tggtggttgc aaatataatt
     1141 gctgatgtga ttttgatttt agaaaaagat attaaaaagc atttagaaga taatgctata
     1201 cttatcttat ctggaatttt ggataagtat aaaacaagag taaaagaaaa atttcaggat
     1261 ttagagctta ttgatgaaat gcaaatcaat gaatggtgct ctttggtata taaaaataaa
     1321 acaaaggaaa aatgatgaat aataacaaca atgctcctaa caataagggt aatccgcagg
     1381 gcaataactt tttcaacaag aatccaattt ttatttttgc gatttttgct attgttatga
     1441 taattgtctt taagggattt tttgatggca atggatcttt aggtggtgct ttaaatggaa
     1501 ctgaggttag caaaaatgta ccttattctg aactcaaaaa acttattgaa agtggacaga
     1561 tcaatcaagt aagtatagga caaactacta taaaagcagt ttctagtgct caaaatacag
     1621 tctatactac taaaaaagtt aatgatcctg aatttgtaag cttgcttgat agtaagaata
     1681 ttgcttatgg agcttattct gaaacaaatt ggtttacaga tattttattt tcttgggttt
     1741 tgcctatatt tattttcttt ggaatttgga tgtttttggc aagtcgtatg caaaaaaaca
     1801 tgggaagttc tatacttggt ataggcagct ctaaaaaact tgtaaattca gaaaaaccaa
     1861 aagttaaatt taacgatgtt gcgggcgtag aagaggcaaa agaagaagtt aaggaaatag
     1921 tagatttttt aaaatatcca gaaagataca ttaagcttgg tgcaaaaatt ccaaaaggtt
     1981 tattgcttgt aggacctccg ggcacaggaa aaacattatt agcaaaagca gtagcgggtg
     2041 aagctgatgt gccatttttt agcgtttcgg gttcatcttt tatagaaatg tttgtgggtg
     2101 tgggtgcttc tcgtgtgagg gatttatttg aaaatgcaaa aaaagaagct cctgctattg
     2161 tttttatcga tgaaattgat gccataggta aaagtcgtgc cgcaagcggt atgatgggtg
     2221 gcaatgatga aagagaacaa actttaaatc agcttttagc tgaaatggat ggttttggga
     2281 ctgaaagttc tccagtaatt gttttagcag ctactaatag acctgaagtt ttggatgcgg
     2341 cccttttaag accgggaagg tttgatcgtc aagttttggt tgataagcct gattttaaag
     2401 gtagatgtga tattttaaaa gtgcatatga aagatgtgaa aatttctcca aaggttaaag
     2461 tagaagatat agcgcgttta accgcagggc ttgcgggagc tgatcttgca aatattatca
     2521 atgaagcagc gcttttagca ggtagggatt cgaaaaaata tgtagaacaa aatgatcttg
     2581 tagaagctgt tgaaagagct atagctggcc ttgaaaagaa atcacgtcgc attaacgaca
     2641 aagagaagaa aatcattact tatcacgaat gtggacatgc tttaattgct gaaactacaa
     2701 agggtgcaaa acgcgttagt aaggtttctg tgattcctag agggcttgct gcacttggtt
     2761 atacactcaa tacgcctgaa gaaaataaat ttttaatgca aaagcatgag cttattgccg
     2821 aagttgatgt gcttttgggc gggcgtgctg cagaagaggt atttataggc gaaatttcta
     2881 ccggtgcaag caatgacctt gaaagagcaa cagatattat caaggctatg atttcaatgt
     2941 atggtatgag tgaaattgca ggcttgatgg tgcttgaaaa gcaaagaaat acttttttaa
     3001 caggtggcca aactataaaa gattattctg aaaaaatggc tgaatcttta gatgattatg
     3061 ttaaaaagac tttggatgag cgttataaag atgttaaaga cactttaaat acttataagg
     3121 gtgcgattga aaccatggtt gcagcacttt atgaagaaga aaccatagaa ggtgctaagg
     3181 taagagatat tatcaaaagt tatgaaaatg aaaacaatct tcctacgcgt ttgcaggaaa
     3241 taaacgaaga acataaagaa gaaagcaaac aagcagagta atgggaaaat atattactaa
     3301 agaaggacat tggtttatag ctatagtttt tatcttattt gttatttgtt ggatatttta
     3361 tagcttttct gtccttcttt ttttattttt attggtactt ttgtttattt ttagaatccc
     3421 aaatcgtgta agggtatgca atgatagtaa ggctatatta tcacctattg atggcaggat
     3481 aactagaata gaaaatacat ttgataaata tttaggtgaa agtgttgaaa taagcattaa
     3541 aaatgctttt tatgatgctg gagcttttta cactcctttt aaaatggata ttaatgatat
     3601 tgcgctaaag catggacttt ttttatgcag cgaattaaaa agcgctagaa taatgaatga
     3661 aaatgtaagt atttttgctt caagtaacgg atctaatgtt gttttacgga tatatgcagg
     3721 ctcttttgat agaaaattga agcttgataa tttatctcat agcttgacag ttggagataa
     3781 aatgggtttt ttaattaatg gaaccataag tattttattg ccaagagata cacgaattca
     3841 tgtaggactt ggagacgagt taaaatcagg ttctttatta ggctacttag cttaaggata
     3901 aaaaatgaac aataataaat cacaatttat ttatatttta cccaatcttt ttacagcagc
     3961 ttcagcgttt ttgggtgtaa tttctataat cgcctctata caaggcaatt attatatggc
     4021 tttattgtat attatttttt ctttaatatg tgatggtctt gatggtcgtg ttgcaaggct
     4081 tacaaagact acttctaaat ttggcattga atttgactct ttggccgatc tgatagcctt
     4141 tggcgccgca ccggccatat ttttttatat ggttattggc tctgaatttg gaagatatgg
     4201 ctctttaata actgcttttt ttgttgtttt tggagcaata cgcctagcaa gatttaatgt
     4261 cactacagga acttatgaac catctgtttt tataggactt cctataccta ctgctgctgt
     4321 agtaagtgct atttggactt atagttatta ttattatgat tttttaagag catatggaat
     4381 cattttttta atcttgcaag cgattttagg cttgctaatg gttagcaata tacgctatcc
     4441 aagttttaaa aagctagatt ttaatagatc aagtgtttta aaggttttga ttatcttaat
     4501 tattgttttt tcttttttat atctttatcc acttgaaagt ttagtaatct tagcaagttt
     4561 gtatgtgatt tatgggataa taagagcgat ttataccctt attttttcta aatttaagat
     4621 gaaagcttaa gcatagaatt gagctatagc ctcacattct gctttgctaa atccagcctt
     4681 tattcttgct tcgatattaa gttttttacc tgctagggaa aattgattaa acattttaca
     4741 aagttctata aaatcataat tgttttgatt ggaaaatttc caccagttat cacccttgct
     4801 tacatgtttt atttcatcat ttaagataat atgcaaaaca tcttttaaaa gactttttat
     4861 gggatggttt gagctttcaa gttttgctac tacaaaagga tttgcatcaa gccccttggc
     4921 ttctaaccct cggtgaacca ctcccattct taaactcaaa caatcttttg tggcttcaag
     4981 cgcggcttct aagttatcat gaatagcaaa atccccatat ttataaccta gctcatctaa
     5041 tgctgcattt aaaagcttga aatgtttgat ttcttcatcg gcaacttcta gccaatcgat
     5101 ataaaattgt tgaggcagat ttttaaaacg ataacttgca tctaaggcta aattgatagc
     5161 actaaattct atatgcgcaa tggaatgaac aatctttgct aaagaatggg tagaatttac
     5221 aaatttaggg cgtctaatgc gagtagggtg caataatttt aaagcagggt taatatttgt
     5281 cttaaaaata cttccttgct cgtgattaaa aatgaatttt tggcttttaa aatcatcata
     5341 aaatatagca aaattttcaa atttgttatc aagattttgc tcatagagta ttttttcaag
     5401 ttcattaaaa aattcttttt gcattttaag tctttct
//
LOCUS       DBBXRO010000112         5322 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.113, whole genome shotgun sequence.
ACCESSION   DBBXRO010000112 DBBXRO010000000
VERSION     DBBXRO010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5322
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.113"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(394..828)
                     /locus_tag="ACJFEZ_001509"
     CDS             complement(394..828)
                     /locus_tag="ACJFEZ_001509"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917612.1"
                     /translation="MKKLALALGGITLGACGEKIYKGIKNTWDKLIFKDLITLRKVIK
                     QYEEIEQIYPSYLNDPKFLEFRKTHKYDAEAIHNIKDHLFSDLKKEKLIQIGTTMEAF
                     MEYSDKYLQDDITALKISWRFCAIRLKFDSALLQLQDINKIV"
     gene            complement(825..1040)
                     /locus_tag="ACJFEZ_001510"
     CDS             complement(825..1040)
                     /locus_tag="ACJFEZ_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917613.1"
                     /translation="MIIVGILGLIISTTVLLTCGVFWVLFGIVFWGVILAFMLLDLNG
                     SYGMVALYILFIVLNLVLIYKIIRRKK"
     gene            1354..2661
                     /locus_tag="ACJFEZ_001511"
     CDS             1354..2661
                     /locus_tag="ACJFEZ_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917614.1"
                     /translation="MKKSKLGTKEFKILGLSSLGGTLEFYDFIIFVFFAEYIAKVFFP
                     KDMSEFWTLLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFTLA
                     FIPGYETLGFLAPFLLILIRIFQGIAIGGELPGAWVFVREHCKEDQKAFSLSCLNSAM
                     ALGILLGSMVFLLINAFFSTEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPIFKQM
                     QKERSLSAFPLKDLFKEKNIFKNMLASIFITWVLTGCVVVLILLMPKFMPSILGLSAI
                     EGSYLQVLGILGITLGGVFMGYLVDKLGLFKICIFFSLVFAFFSCLYFYALYDLKNLV
                     LTCILYTSVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAIAGGVTPQLIFWL
                     NALATRGENPFLYGMSIYMIFLALLAICAVFLVKDKINFDNRS"
     gene            2708..4333
                     /locus_tag="ACJFEZ_001512"
     CDS             2708..4333
                     /locus_tag="ACJFEZ_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HGG0917615.1"
                     /translation="MPFILELLKQNKFKFISFLIFSFITSAVGVLTLVFINDYLLKNT
                     QNIPILYFIALLIVFFLSSTIVELGLSVFGQNFIFKMQRRVVKQILDTPLLKVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDVY
                     FDMADRILLAQNGQICELKGDIKELAKNAVEKF"
     gene            4343..4816
                     /locus_tag="ACJFEZ_001513"
     CDS             4343..4816
                     /locus_tag="ACJFEZ_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF336 domain-containing protein"
                     /protein_id="HGG0917616.1"
                     /translation="MKKLLILCVFLGVSLMAKSFELVKEPVLTTQMVEGILELAKKEA
                     RKNGFYVSITIVDKSGQILAVLRDDKAGVHTLNASYKKAYTATSQKRETAVIFKGVKD
                     GKIPEDIRYLDDKFSIMPGGVPIFIDGVVVGGIGVGGAHLDEDVKIAKAGIAFLK"
     gene            complement(4840..5268)
                     /gene="cgb"
                     /locus_tag="ACJFEZ_001514"
     CDS             complement(4840..5268)
                     /gene="cgb"
                     /locus_tag="ACJFEZ_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HGG0917617.1"
                     /translation="MTQEQIQIIKDCVPILQKNGEDLTKEFYKVMFNDYPEVKPMFNM
                     EKQASGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEEAYKAIAQFYIDIEKEIYAKAK"
BASE COUNT         1678 a          691 c          864 g         2089 t
ORIGIN      
        1 ataaagattt ttcctctgcc aactcgtctt tttccttaag tattttgcga atttgtatat
       61 ctagtttttc ttcttttaaa gtaaaataca acctagaaat aagaaacata ggcataaagg
      121 ttttagaaat catctctact cttttttctt ttatatcttt actgctacaa aagttgatat
      181 aagccaataa gcaaatttgt atatctttaa gcctttcttt atctgtttct tctagtctaa
      241 attctttaaa atcacggtaa tttaaagcat tttttgcttc aaaacctttt ttaaaattta
      301 caaattcttc atcattaaaa tagcttgaaa attgagtatt taaaattcaa attctttgta
      361 aatttctttt aaattttctt gcattttaac tctttatact atcttgttta tatcttgcaa
      421 ctgcaacaaa gcactatcaa attttaatct tatagcgcaa aatctccagc tgatttttaa
      481 tgccgttata tcatcttgaa gatatttatc gctatattcc ataaaagctt ccattgtagt
      541 gcctatttga ataagctttt ctttttttag atcgctaaat aaatgatctt ttatattatg
      601 aatagcttct gcatcgtatt tgtgggtttt tctaaattct aaaaatttag gatcgtttaa
      661 ataactagga taaatttgct ctatttcttc gtattgcttg atgacttttc taagtgtgat
      721 gagatcttta aaaatcaatt tatcccaagt atttttaatg cctttataga ttttttcacc
      781 acaagcacct agtgtgattc cacctaaagc taaagctaat tttttcattt ctttctcctt
      841 atgattttgt aaattaaaac taaattaagc actataaaaa gtatataaag tgccaccata
      901 ccataacttc catttaaatc caaaagcata aaagctaaaa tcactcccca aaacacaatc
      961 ccaaataaaa cccaaaatac tccacaagtt aacaaaaccg ttgtactaat gataagtcct
     1021 aaaatcccta caataatcat catttttacc ttgctaaaat attgttattt tttactatag
     1081 ataaaaatat agttttttgt cttgtaaaaa gtatttgggg tttttaaagc tcgggtttgc
     1141 atttttttcc ttgattttaa tttcaaaaaa aagtataaag tattcttatg acagcttgtg
     1201 tcgttttttt gaaaaattat taaaaatttt gcttaagctg atttttatga tttttatcat
     1261 caaaatgagt taaattaaat tgaaaaggat tgtttgtttt ataaatattt gtagtataat
     1321 ggttattttt aaaattcttt aaggtataaa ataatgaaaa aatcaaaact aggtacaaaa
     1381 gaatttaaaa ttttaggact ttcgtcgcta ggtggaactt tagaatttta tgattttatc
     1441 atctttgtat tttttgctga atatatcgca aaagtatttt ttcctaaaga tatgagtgaa
     1501 ttttggactt tgttaaatac ttatggagct tttgctgcag gttatttagc gcgcccttta
     1561 ggtggtatag tgatggcgca ttttggtgat aaatttgggc gtaaaaatat gtttatgtta
     1621 agtattttac ttatggtgct tcctactttt acattggctt ttatacctgg ttatgaaact
     1681 cttggtttct tagcaccgtt tttacttata cttataagaa tttttcaagg tattgctata
     1741 ggcggagaat tacctggtgc ttgggttttt gtaagagaac attgcaaaga agatcaaaag
     1801 gctttttctt tgagttgttt aaattcggct atggctttgg gaattttact aggaagtatg
     1861 gtatttttac tgatcaatgc tttttttagc accgaagaaa tcgcagctta tgcatggcgt
     1921 atcgcttttt ttgtgggtgg aatttttggg attatttcta tttatttgcg tagattttta
     1981 caagaaactc ctatttttaa acaaatgcaa aaagaacgga gtttgagtgc ttttccactt
     2041 aaggatttgt ttaaagaaaa aaatattttc aaaaatatgc tcgcatctat ctttataact
     2101 tgggttttaa caggttgtgt tgtagtgctt atcttactga tgcctaaatt tatgccaagt
     2161 attttgggtt tgagtgcgat tgaaggaagt tatttacaag ttttaggaat tttaggtata
     2221 acactaggtg gagtgtttat gggctatctt gtggataaat taggtttgtt taaaatttgc
     2281 attttctttt ctttagtttt tgcatttttt tcttgcttgt atttttatgc tttatatgat
     2341 cttaaaaatc ttgtcttaac ctgtatttta tatacaagtg tttgtttttt aggtgggatt
     2401 aatgtctttg ctcctatttt aatgagtgaa gtttttagag ctaaaataag attttcagga
     2461 atttcctttt cgtataatat cgcttatgct atcgcaggag gggttactcc tcagcttatt
     2521 ttttggctca atgctcttgc tactagaggc gaaaatccat ttttatatgg aatgagtata
     2581 tatatgattt ttctagcttt attggctatt tgtgctgttt ttcttgtaaa ggataaaata
     2641 aattttgata atcgctctta aaatgctata attaattttt ttaattatac tttcggagtt
     2701 tttatcaatg ccttttattt tagaattgct taaacaaaat aaatttaaat tcatctcttt
     2761 tttgattttt tcttttatta caagcgctgt aggggtttta accctagtct ttatcaatga
     2821 ttatttactt aaaaatacac aaaatattcc tattttatac tttatcgctt tgcttatagt
     2881 attttttctt agctctacca tagtagagtt aggattaagt gtttttggtc aaaatttcat
     2941 ttttaagatg caaagacgcg tggtaaaaca gatcttagat actcctttgt taaaagttgc
     3001 aaaagtgggc aaggcaagaa ttctagcttc tttgggaagt gatgtgagaa atatatcttt
     3061 tgggctttta agattgcctg attttttaca atcaagtata ttgattttat gcactagtgt
     3121 ttatttatgt tatctttcac cacaaatttt tgctttgtgt gtggtatgga ttatggttat
     3181 ttttattact aataattttt tgatgatgaa agtatatcag tattttagaa aggcaaggga
     3241 aaatgatgat gctttgcaaa ataattacca aaatatacta gatggacata aagaactttt
     3301 gatcaatcgt gatagagcca agctttatta tgaagatgaa tttgaaaata atgcaagatt
     3361 gaaaaagaaa aatagtactt taggtaatct ttttaacaat ctctcaaaca actggacaaa
     3421 tgtaactctt ttggctttag tgggtgtaga gttttactta gctttaaaat ttgaatgggc
     3481 aagtgttgca gatgctacaa ctatagctct ttctattttg tttttacgaa cccctttagt
     3541 atctatgata ggatcttttc ctactttgct tttggcaaaa atcgctttgg ataagatcgc
     3601 aaaattggaa ttagatgatt atatagaagg ttttaaaaaa acacattata tcagtgaatg
     3661 gaaaaaaatt tcttttagaa atactcaatt tgcttatgaa gaaaattttc atttaaatcc
     3721 tgtaaatata gagcttaaaa aaggtgaatt ggtattttta ataggtaaaa atggaagtgg
     3781 taaatccact ttttgtatgc ttttgacagg actttttaag ccaagcaaag gcggaattta
     3841 tgttgatgat acgcttatag atgataaaaa tttagatgag tatagatctc ttatttctgc
     3901 tgtttttagc gattttcatc tttttactaa aaccttaaat aaagaaaatt ttgcaagcga
     3961 agaaaaaatt gctttttggt tggagttttt agaacttaaa gataaaacaa gtgtcaaaga
     4021 taatgaactg accttaacca aactttctac agggcaaaaa aagcgtttag ctatgcttat
     4081 agccttgctt gaagaaaggg atattttagt gcttgatgaa tgggcggctg atcaagatcc
     4141 tgtttttaga agattttttt ataaaaaact tttacctttg ctaaaagagc aaggtaaaac
     4201 aatctttgct atcacacatg atgatgtgta ttttgatatg gctgatagaa ttttacttgc
     4261 acaaaatggt caaatttgtg aattaaaagg cgatataaaa gaactagcaa aaaatgcggt
     4321 agaaaaattt taaaggaaaa aaatgaaaaa attactcatt ttatgtgtat ttttaggagt
     4381 aagtttaatg gcaaaatctt ttgagcttgt aaaagagcct gtgttaacta cacaaatggt
     4441 tgaagggatt ttggagcttg caaagaaaga agcaagaaaa aatggctttt atgtaagtat
     4501 tactatagta gataaatctg gccaaatttt agcagtttta agagatgata aggcgggcgt
     4561 gcatacactt aatgctagtt ataaaaaagc ttatacggcc acttcacaaa aaagagaaac
     4621 agcggttatt tttaaaggtg taaaagatgg taaaatacct gaagatattc gttatttaga
     4681 tgataagttt tccattatgc ctggtggggt gccgattttt atagatggag ttgttgttgg
     4741 tggtataggt gtgggtggag cacacttaga tgaggatgta aaaatagcta aagcagggat
     4801 agcattttta aaataggctt tgaacatcaa agcctatgat tacttagctt ttgcataaat
     4861 ttctttttca atgtctatgt aaaattgtgc gatagctttg taagcttctt cccaagcttt
     4921 aagtgttgct tcatcagggt ttaaaaggtt tttgattgct tttaaaaggc aagctcctac
     4981 tataggataa tgctcttctt taacccctaa atttacatga gttatggcaa ctttatccac
     5041 aaatgatctc atattttcta aattttctat atttttagct gccattaaaa tagccatggc
     5101 taaggctttc ggttgctccc cagatgcttg tttttccata ttaaacatag gttttacttc
     5161 aggatagtca ttaaacatta ctttgtaaaa ctcttttgtt aaatcctccc cgtttttttg
     5221 taaaattggt acgcaatctt tgataatttg aatttgttct tgtgtcatag ttttcctttt
     5281 agctcttaat ttttttaaaa tagagcgtat tctaactttt aa
//
LOCUS       DBBXRO010000113         5244 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.114, whole genome shotgun sequence.
ACCESSION   DBBXRO010000113 DBBXRO010000000
VERSION     DBBXRO010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5244
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.114"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            122..1393
                     /locus_tag="ACJFEZ_001515"
     CDS             122..1393
                     /locus_tag="ACJFEZ_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HGG0917618.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRIGNPTSDVLGQRLANVEGGAFGIPVSSGMAACFYALVNLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKITQIAKKHKIATICDNTVATPFLLQPFKHGVDIIVHSLSKYVSGQGSALGGAL
                     IERKDLNDLLKNNDRYKTFNTPDPSYHGLNLNTLDLPIFSIRIIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEARDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGIKKTTVRLSIGLENSDDLIADLKQAIES"
     gene            1405..2445
                     /locus_tag="ACJFEZ_001516"
     CDS             1405..2445
                     /locus_tag="ACJFEZ_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE thiosulfate transporter family
                     protein"
                     /protein_id="HGG0917619.1"
                     /translation="MLSGIIVGLLLGFVLQRGRFCVVGAYRDVFLSKKFTIFIALFIV
                     VALQSIGVWALHSLGYISIKPQEFYWLSTIIGGIIFGFGMVIAGGCATGTWYRAGEGL
                     IGSIAALLFYAFSASAVKYGVLLPLQDNLNTFKISDGTFYQSLGISPWILVLALSLVV
                     GFFVIRELRKPRLKVARLKPRKQGISHILFEKSWHPFVTAVLVALIAILAWPLSSLSG
                     RNHGLGITTPSANLVQYLSTGDVQFVDWGVFLVLGIALGSFLGAKLSGEFRFRLPDKK
                     TLAYASIGGILMGVGASLAGGCTIGNGLVETSLFSYKGWVATVFFLIGAYIATFYTII
                     LPTRKATQKIQG"
     gene            2449..2670
                     /locus_tag="ACJFEZ_001517"
     CDS             2449..2670
                     /locus_tag="ACJFEZ_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HGG0917620.1"
                     /translation="MVTLDTRGKVCPFPLVEAKNLVQTLKSGEELEILFDCTQATETI
                     PQWAAEEGHEIVDFELLGDAEWRIKLIKK"
     gene            2681..3562
                     /gene="metA"
                     /locus_tag="ACJFEZ_001518"
     CDS             2681..3562
                     /gene="metA"
                     /locus_tag="ACJFEZ_001518"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008899 - homoserine O-succinyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019281 - L-methionine biosynthetic process
                     from homoserine via O-succinyl-L-homoserine and
                     cystathionine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HGG0917621.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGSRRAKHQDIRPQEILIINLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLDEVKKRKFDGA
                     IVTGAPVEQMDFEKVAYWKELLEIFDFLQQNVTSSMYICWGAMAALKHFYGVDKIALD
                     KKIFGIYKHDKISPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKVLLRNKKI
                     GSALLRDEKNIFILGHLEYFKDTLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(3567..4166)
                     /locus_tag="ACJFEZ_001519"
     CDS             complement(3567..4166)
                     /locus_tag="ACJFEZ_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HGG0917622.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKEQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGASKSEIKGLEDFVIPHELMPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRN"
     gene            4327..4710
                     /gene="queF"
                     /locus_tag="ACJFEZ_001520"
     CDS             4327..4710
                     /gene="queF"
                     /locus_tag="ACJFEZ_001520"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HGG0917623.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYIPDQFVVELKAIKLYINTFMHRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            4897..5223
                     /locus_tag="ACJFEZ_001521"
     CDS             4897..5223
                     /locus_tag="ACJFEZ_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HGG0917624.1"
                     /translation="MKTKIIPAILACSAILASANMVPASTQTPAVAPAPLHPYPAYPQ
                     QAMPPQDYFNGLPKNINSQIQNLHPGAFIVDVDWEEYGYEVKLNNFMELYFDRNGNFL
                     GQKFDD"
BASE COUNT         1699 a          798 c          948 g         1799 t
ORIGIN      
        1 ttggcacgct taatctactc gtatatactc atattctata aatttacatt tccaaacaat
       61 ctagtttaaa gctgataaaa ggctttttag tattttttta attaacaaaa aaggataaaa
      121 aatgaatttt aataaagaaa ctttagcatt acatggagct tataattttg acactcaaag
      181 aagtattagt gtgcctatat atcaaaatac tgcgtataat tttgaaaatt tagatcaggc
      241 tgcagcgaga tttaatcttc aagaacttgg caatatttac tcaaggatag gcaatcctac
      301 aagcgatgtt ttaggacaaa gacttgctaa tgttgagggt ggggcttttg gaattcctgt
      361 ttctagcggt atggcagctt gtttttatgc ccttgtgaat ttagcaagtt caggagataa
      421 tgtcgcgtat tcaaataaaa tttatggtgg aactcaaact ttaatttctc acacacttaa
      481 aaattttggc atagaagcta gggaatttga tatcgatgat ttagatagct tagaaaaagt
      541 tatagatcaa aacacaaaag cgattttttt cgaaagtctt tcaaatcctc aaattgccat
      601 agctgatata gaaaaaataa cccaaatagc aaaaaaacat aaaatcgcta ccatttgtga
      661 taatactgtt gctactcctt tcttactcca accttttaaa catggagtgg atataatcgt
      721 gcatagttta agtaaatatg taagcggtca aggcagtgct ttgggtggag cacttataga
      781 aagaaaagat ttaaatgact tgcttaaaaa taacgataga tataaaactt ttaacactcc
      841 tgatccaagt tatcatggac tgaatttaaa tacacttgat ttgccaattt ttagcattag
      901 aatcatcatc acttggctta gagatttagg agctagctta gcacctcaaa atgcttggtt
      961 gcttttacaa ggacttgaaa ctttagcagt gcgtatagaa aaacacagcc aaaatgctga
     1021 aaaagttgcg aattttttaa attctcatcc tgatatcaag ggtgtaaatt atcctacttt
     1081 agcaagtaat gcttatcata atttatttaa aaaatatttt gataaaaatt tcgctagtgg
     1141 acttttaagc tttgaagcta gggattatga gcatgctaga agaatttgtg ataaaactca
     1201 acttttctta cttgctgcaa atttaggtga tagtaaatct ttaattatcc atcctgcttc
     1261 tactactcat tctcaactaa gtgaagaaga acttcaaaaa gcaggcatta agaaaaccac
     1321 tgtgcgttta agcatagggc ttgaaaatag cgatgatttg atagcggatt taaaacaagc
     1381 tatagaaagt taaagagcgt gtttatgtta agtggaatta tagttggttt gttattaggc
     1441 tttgttttgc aaaggggacg attttgcgtt gtgggagctt atagagatgt atttttaagt
     1501 aaaaaattta caatttttat agcgcttttt atcgtcgttg cattgcaaag tattggtgtt
     1561 tgggctcttc attctttagg atatatttcg ataaagcctc aagagtttta ttggctttca
     1621 acgattattg gtgggattat ttttggcttt ggtatggtca tagcaggagg atgtgctaca
     1681 ggaacttggt atagagcagg ggagggcttg atcggttcta tcgcagcttt attgttttat
     1741 gcttttagtg caagtgctgt aaaatacgga gttcttttgc ctttgcagga taatttaaat
     1801 acttttaaaa tttctgatgg aactttttat caaagcttgg gaatttctcc ttggattttg
     1861 gtgcttgcct tgagtttggt tgttggcttt tttgtgatta gagaattacg caagccacgc
     1921 cttaaagttg caagattaaa gcctagaaag caaggaattt cacacatatt gtttgaaaaa
     1981 tcgtggcatc cttttgttac ggctgttttg gttgcattga tcgccatttt agcttggcct
     2041 ctttcaagct taagtggaag aaatcatggt ttagggatta caactccttc ggcaaatctt
     2101 gtacaatacc ttagcacagg tgatgttcag tttgttgatt ggggagtttt tttggttctt
     2161 ggaatcgcac ttggatcttt tttaggtgct aaattatcag gggaatttag atttcgtctt
     2221 cctgataaaa aaactctagc ttatgcaagc ataggaggaa ttttaatggg ggttggagct
     2281 tctcttgctg gaggctgtac cataggtaat ggattggtag aaacatcgct tttttcgtat
     2341 aaaggttggg ttgctacggt atttttctta ataggtgctt atatagctac tttttataca
     2401 attatattgc ctacgcgtaa ggcaacacaa aaaatacaag ggtaagatat ggtaacttta
     2461 gatactagag gaaaggtttg tccctttcca ctcgttgaag caaagaattt ggttcaaact
     2521 ttaaaaagcg gtgaagaatt agaaattctt tttgattgta cacaagctac agaaacaatc
     2581 ccacaatggg ctgctgaaga aggacatgag atcgttgatt ttgaactttt aggcgatgca
     2641 gaatggagaa taaagcttat taaaaaataa aggagaaaaa atgccactta ttattccaga
     2701 aaatataccc gcttatgagc ttttaaaaga gcatgctttt atcatgggat caaggagggc
     2761 aaaacatcaa gatatccgtc cgcaagagat tttaatcatc aatcttatgc caaaaaaaat
     2821 tgaaacagaa aatcaaattt taagcttact tgcaaattct cctttgcaag taaatatcac
     2881 acttttagct actactagct atgtaggtaa aaacactcct tttactcatt tagaaaaatt
     2941 ttataaaggt cttgatgagg ttaaaaaacg caaatttgat ggtgctattg ttacgggagc
     3001 tcctgtggaa caaatggatt ttgaaaaagt tgcttactgg aaagaattgt tagaaatttt
     3061 tgatttttta cagcaaaatg taacaagttc tatgtatatt tgttggggtg ctatggctgc
     3121 tttaaaacat ttttatggcg tagataaaat cgctttagat aagaaaattt ttggaattta
     3181 taagcatgat aaaatttcac ctgatttact tttaacgaat ttagatgaaa aggttttaat
     3241 gcctcattca agacattcta gtatggatga agagcaaatt ttagcactac aaaaacaagg
     3301 gaaattgaaa gttttgctta gaaataaaaa aatcggctcg gctttgttaa gagatgaaaa
     3361 gaatattttt attttaggcc atttagagta ttttaaagat actttacacc aagaatatgt
     3421 aagagataat ttcatacaaa aagctaaaaa ttattacgat aaaaagggca atataaaata
     3481 caattggcgt tcaaatgcga acaccatctt tgcaaattgg ctcaattatg atgtgtatca
     3541 aagcacacct tttgtgcttt gatgatttaa tttcttgtag taggggtatc gtgatatacg
     3601 cttactgcac ctttgatatc gcttaaaatc gcgcaagctg cttcattggc acttcccata
     3661 gcgcaagcta ccatagtcgt aacacctgaa gcaagtcctg ctgcgtaaat tccttctttg
     3721 ataatctgtc tcccgtgatg tttgaagcaa aatttgtttg gctttggcat aagttcatga
     3781 ggtataacaa agtcttcaag tcctttgatt tcacttttac ttgctcctgt tgctacgatg
     3841 atataatctg cttttatacc caagccttgc tcatcattaa ccgtaaaatc gcctttttct
     3901 ccactaatgc ttactacttt tgaatcgata tattttacct caagcataga agcaatttgt
     3961 tcttttatat gagtgtaaat ttcatctgct tttgcacctt ttgggaaaaa aggaacattg
     4021 taaattgctg ctgcttttaa atctgcttta ccctcatcga aaacagtgat atcaaagtca
     4081 agttcttcat ttttagctga agcgaaaaat aaagccgcgc taagtcctgc gatgctaccg
     4141 cctataattg caattgattt tctcattttt ttccttttta aaaatttgtc ttattctagt
     4201 ataaaaagct ttatttaatc taatatcgat cttttttata caatttgtta aaaatgttta
     4261 tttttcaatt gctctaaaag taatttttta tataattttc taaaaatttt tcaataagga
     4321 aagctcatgc gttatggtga aaaagaaatt aaagaatttg atgtagaaaa tatggaaatt
     4381 tggcctaatg atgcgaagaa tgattatatt ataaaaatca ccttacctga atttatgtgt
     4441 tgttgtccgc gttcgggtta tcctgatttt gcgacgattt atcttgagta tatacctgat
     4501 caatttgtgg ttgaacttaa agcgataaaa ctttatatca atacttttat gcatagaaat
     4561 gtttcacatg aagcaagcat caatgaaatt tataatacct taaaagataa gctcaagcca
     4621 aaatggatta aggtggtagg ggattttaat ccacgcggaa atgtgcacac agtgatagaa
     4681 tgtcgcagtg atatggtagt gccaaaatga aataaagctt ttgcattcat gtaaagcttt
     4741 ataaaaaata gctttaaagt gcaaaagctt caaaattttt tcaatattct aaatttatag
     4801 agctattttc taaatatttt ttatcttatc tttcacgctc gcttcacaca aaaaacataa
     4861 acttacactt gttaaaacat tttaaggagt tagataatga aaacaaaaat tatccctgct
     4921 attctagcat gctctgcaat tcttgcaagt gcgaacatgg tccctgcttc gactcaaact
     4981 cctgcagtcg cacctgcccc acttcatcca tatcctgcat acccacaaca agctatgcca
     5041 ccacaagatt attttaatgg cttaccaaaa aatatcaaca gccaaattca aaatctacat
     5101 ccaggtgctt ttattgttga tgtggattgg gaagagtatg gttatgaggt taagctcaat
     5161 aattttatgg agctttattt tgatcgcaat ggcaattttt tgggacaaaa atttgatgat
     5221 taatcacttt tgattgaaac tttt
//
LOCUS       DBBXRO010000114         5224 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.115, whole genome shotgun sequence.
ACCESSION   DBBXRO010000114 DBBXRO010000000
VERSION     DBBXRO010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5224
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.115"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..498
                     /locus_tag="ACJFEZ_001522"
     CDS             <1..498
                     /locus_tag="ACJFEZ_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HGG0917625.1"
                     /translation="LDRDGVINIDKKYVYKIEDFEFCDGIFELCRYFLAKKYLLFIAT
                     NQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHLEGCECRKPKAGMLLKA
                     KDEFNLDMKNSIFIGDNLSDMQAGLNANIGTLILVNEEKKEGDFFRQFKNLKEILSFF
                     KEKDI"
     gene            499..1452
                     /gene="rfaD"
                     /locus_tag="ACJFEZ_001523"
     CDS             499..1452
                     /gene="rfaD"
                     /locus_tag="ACJFEZ_001523"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HGG0917626.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLDFNGELFVGDINDEKVLKKIEDFKPEVIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIKLHAKLVYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARSFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            1445..2830
                     /gene="rfaE1"
                     /locus_tag="ACJFEZ_001524"
     CDS             1445..2830
                     /gene="rfaE1"
                     /locus_tag="ACJFEZ_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HGG0917627.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVLALGVVGDDESGKFLKENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDTSAILLEDELVELFNKRIENFKAVVLSDYAKGVLTPKVCKAVI
                     EKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGKNLEKGIKKLKE
                     DFALRYSIITLSEAGIALFDENLKIAPAKALEVYDVTGAGDSVIAVLAFCLASGVEIF
                     KACEIANEAAAIVVSKIGSVSVSFDEMKSFKRVGFEKKIKTKEELLKILEQSDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDILIVGLNSDKSVKRLKGEDRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGSNLISRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            2827..3387
                     /gene="gmhA"
                     /locus_tag="ACJFEZ_001525"
     CDS             2827..3387
                     /gene="gmhA"
                     /locus_tag="ACJFEZ_001525"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HGG0917628.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGKMNELCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(3368..4327)
                     /gene="waaF"
                     /locus_tag="ACJFEZ_001526"
     CDS             complement(3368..4327)
                     /gene="waaF"
                     /locus_tag="ACJFEZ_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HGG0917629.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLV
                     YLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL"
     gene            4386..5204
                     /locus_tag="ACJFEZ_001527"
     CDS             4386..5204
                     /locus_tag="ACJFEZ_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0917630.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNIVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLEFLSKQRHFCWSVWAKC
                     FKKDIILKSFEKIKIDERLSYGEDVLFCYIYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILWQNYQDKVKSNELIKKLSLEFENDKFYKQLFDVLNKEELDLKRRIDNL"
BASE COUNT         1835 a          590 c         1039 g         1760 t
ORIGIN      
        1 ttagatagag acggtgtgat taatatagat aaaaaatatg tctataaaat agaagatttt
       61 gaattttgtg atggaatttt tgaactttgt agatattttt tagctaaaaa atatttgctt
      121 tttatagcga caaatcaatc aggcattgca agaggatatt ataaggaaag tgattttttt
      181 aagctttgtg attatatgct taaagaattt actaaacaag gtataaaaat tgataaaatt
      241 tatcattgtc cgcatttaga aggttgtgaa tgtcgcaaac ctaaagcagg aatgctttta
      301 aaagcaaaag atgagtttaa tttagatatg aaaaattcta tttttatcgg agataatcta
      361 agcgatatgc aagcagggtt aaatgctaat attggcactt tgattttggt aaatgaagaa
      421 aaaaaagaag gcgatttttt tagacaattt aaaaatttaa aagaaatttt gagttttttt
      481 aaagaaaagg acatttaaat gagagtagca atcacaggtg gtgcaggatt tataggttcg
      541 caactagctt taaatttgca agaaaaacat gaaattttaa tcattgataa aatgcgtagc
      601 agtgcgactt ttgaaaatgg aaatttacaa agttttgggc actttaaaaa tttacttgat
      661 tttaatggtg agctttttgt gggtgatatt aacgatgaaa aggttttaaa aaaaatcgaa
      721 gattttaaac ccgaagtgat ttttcatcaa gcagcgattt cagatacaac ggtttttgat
      781 caaactaagg ttttacagac gaatcttaat acttttaaag attttataga actcagcata
      841 aaacttcacg caaagcttgt ttatgctagt tcagcttctg tttatggcga tgcaaaaagc
      901 ccacaaactg taggtaaaga tgaagaacca aaaaatcctt atgctttttc aaaattgatg
      961 atggataagt tagcgaaaaa atattacgat aaagctcatt tggtaggact tagatatttt
     1021 aatgtttatg gaaaaggcga attttataaa aacaaaaccg cttctatggt tttgcaattt
     1081 ggccatcaaa ttttagcagg aaaaaatcca cgattgtttg aaggaagtga tcaaatttat
     1141 agagatttta cttatattaa agatgttatt agtgctaatt taatcgccct tgattcaaaa
     1201 tgtggggttt ataatgtagg cagtggtaaa gcaagaagct ttcaagatat agttgatatt
     1261 ttgcaaaaag agttaaagac tgatttgcct tgtgaatata tcccaaatcc ttatgtaaaa
     1321 tcttatcaat tccatactga agcaaaacta gatcaaactt gggattatca gccaaaattt
     1381 agtcttgaag aggggattaa agattattta gatgagataa aaagactttt tgaaaaggaa
     1441 gtaaatgctt gagtttttaa gccaacaaaa acctaaaatt ttaattatag gggattttat
     1501 ggtggataat tacacttggt gtgattgttc gcgcattagt cctgaagctc ctgttttggt
     1561 agctaaaact cttaaagaag ataaaagatt aggcggggct gcgaatgttt atgcaaattt
     1621 aaaaagcttg ggagctgatg ttttagcgct tggtgtcgta ggagatgatg agagtgggaa
     1681 atttttaaaa gaaaatttaa aaggagaatt tttaatccaa aaaggacgca aaaccccttt
     1741 taaaaatcgc atcatggcac ataatcagca agttttaaga cttgatgaag aggatacgag
     1801 tgcgattttg ctagaagatg agcttgtaga attgtttaac aaaagaattg aaaattttaa
     1861 agctgtggtt ttaagtgatt atgcaaaagg agttttaacg cctaaagtgt gtaaggctgt
     1921 gatagaaaag gctaaggctt taaatatccc tgttttggtt gatcctaagg ggagtgattt
     1981 tagtaaatat agtggtgcaa ccctactcac gcctaataaa aaagaagctt tagaggcttt
     2041 gaaatttgaa aatttagagg gtaaaaattt agaaaaaggg attaaaaaat taaaagaaga
     2101 ttttgctttg cgttattcta tcatcactct ttcagaagcg gggattgcac tttttgatga
     2161 gaatttaaaa atcgcacctg ctaaagcttt agaagtttat gatgtaacag gggcgggcga
     2221 tagtgtgatt gccgttttgg ctttttgttt ggctagcgga gtggaaattt ttaaagcttg
     2281 tgagatcgca aatgaagcag cggctatcgt agtgagtaaa ataggcagcg tgagtgtgag
     2341 ctttgatgag atgaaaagct ttaaacgtgt aggttttgaa aaaaagatca agactaaaga
     2401 agagctttta aagattttag agcaaagtga taaaaagatc gtttttacaa atggttgctt
     2461 tgatatcgtg cattttggac atataaaata tcttgaaaaa gcaaaaagat tgggcgatat
     2521 tttaatcgtg ggcttaaact ctgataaaag cgtaaaaagg cttaagggcg aagatcgtcc
     2581 tgtaaattca gaatttcaaa gagcttgtat gttggcagct ttttattttg tagattttgt
     2641 agtgattttt gatgaagaca cacctttaga acttataagc tttttaaagc ctgatatttt
     2701 ggttaaagga gctgattata aagataagct tgttgtaggt tcaaatttga tttcaagagt
     2761 tgaattaatc gattttgaag aaggatttag tacgagtaag attatagaaa agattaagga
     2821 taaaaaatga taaatttagt agaaaaagaa tggcaagaac atcaaaaaat cgttcaagaa
     2881 agtgaaattt taaaaggaca aatcgctaaa ataggcgagc ttttatgtga atgtcttaaa
     2941 aaaggtggta aaattttaat ttgcggaaat ggtggaagtg cagctgatgc acagcatttt
     3001 gcagctgaac ttagtgggcg ttataaaaaa gaacgcaagg ctttagcagg tatagcgctt
     3061 acaaccgata cttcagcgct tagtgctata ggaaatgact atggttttga gtttgttttt
     3121 tcaagacaag tggaggcttt aggaaatgaa aatgatgttt taatcggcat ttcaaccagt
     3181 ggaaaaagtc ctaatgtcct agaagcattt aaaaaggcta aagagttaaa tatgctttgc
     3241 ttggggctta gcggtaaagg aggcggaaag atgaatgagc tttgcgatca taatcttgtc
     3301 gtgccaagtg atgatacggc tagaattcaa gaaatgcata tcttaatcat acacacgctt
     3361 tgtcagatca tagatgaggg tttttaagta aatttctagc ttcttctata accctttgag
     3421 gctttaaatc tttcatacat ttgtggtgtt ttaaaggaca ggttttttgc atacaaggca
     3481 tacaagctag atctaaatac actaattttg cgttttcatt ttgccaaggt gaagtttggg
     3541 taaatttcgt agggccaaaa atagccacgg tttttacctt ataaaccgca cttatgtgca
     3601 taggtccact gtcatttgtg atgaaaagat cgcaaaaagc gatattttga caaagggttt
     3661 tgatggtggt tttattgcaa agatttttta cttttatgtt ttgttctttt aaaatttgat
     3721 aaatttcatt acaaagttct tgttcggctt ttcctgcgcc aaagattaca atttcatgac
     3781 tttggctgaa atttaaagcc actttagcaa aataactcgc atcccatctt tttgcacttc
     3841 caaagcttgc accagggttg agtcctagaa tttttttacc atttcttaag ataagagggt
     3901 tttgaaattt tagcttaaat ggaagtttta agtccttaaa atgagctttt gtattaagtg
     3961 agttttctat aaaataaagg tattttaaaa cttgatgttc ttctttgtgc ttgtttttgt
     4021 caaaaaaata tctttgtttt gttttaagaa tatgtaagat aatcttggaa gaaaacgcag
     4081 atctaaaagc aaagctaaga tcgattttac caagttcttt gcgtaaagat agggcttgtt
     4141 tgtagcggga ttgtttattt tctatgatga ttttagaatt aggaaattct ttaaaaagtg
     4201 ctgtggaaac caaagatcca taaaggataa attgggcatt tttaaaatgt tcttttatag
     4261 cgtataaagc aggtgaagcc atcactgcgt cgcctagcca agtgggaaga tgtataaaaa
     4321 ttttcataaa tttcctaaac tttgatagaa ttgtttttat tattttaaca aaatttagga
     4381 aaaatatgcc acaactttcg atcataatcc cgctttttaa ttcttgtgat tttatttcaa
     4441 gggctttgca aagttgtata aatcagactt taaaagatat tgaaattttg attattgatg
     4501 ataaaagtaa agataatagt ttaaatatag ttttagaatt tgctaaaaaa gatccaagga
     4561 taaaaatctt tcaaaatgag gaaaatttag gcacttttgc aagcagaaat ttgggagttt
     4621 tacattccag ttctgatttt ataatgtttt tagatagtga tgattttttg acgcttgatg
     4681 cttgtgaaat agcgtttaaa gagatgaaaa aaggttttga tttactttgt tttgatgcct
     4741 ttgtgcatag agtaaaaacc aaacaatttt atcgttttaa acaagatgaa gtttttaatc
     4801 aaaaggaatt tttagaattc ttaagcaaac aaaggcattt ttgctggtcg gtttgggcga
     4861 agtgctttaa aaaagatatc atcttaaaaa gttttgaaaa aattaaaata gatgagcgtt
     4921 tgagttacgg cgaagatgtg cttttttgtt atatttattt tatgttttgc gagaaaatag
     4981 ctgtttttaa aacttgtatt tatcattatg aatttaatcc aaatggaaga tatgaaaaca
     5041 aaaataaaga aattttatgg cagaattatc aagataaagt aaaaagcaat gagctgataa
     5101 aaaagctttc tttagaattt gaaaatgata aattttacaa acaattgttc gatgttttaa
     5161 ataaagaaga gttggattta aaaagaagga ttgataattt atagggatat taaaaatgat
     5221 tttt
//
LOCUS       DBBXRO010000115         5198 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.116, whole genome shotgun sequence.
ACCESSION   DBBXRO010000115 DBBXRO010000000
VERSION     DBBXRO010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5198
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.116"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            16..456
                     /gene="fabZ"
                     /locus_tag="ACJFEZ_001528"
     CDS             16..456
                     /gene="fabZ"
                     /locus_tag="ACJFEZ_001528"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HGG0917631.1"
                     /translation="MIDVMKIQEILPHRYPFLLVDKITELKVGEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMDAKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMQVVKNRGNMWIFKGQAFVDGNLVAEAELKAMVVDK"
     gene            467..1258
                     /gene="lpxA"
                     /locus_tag="ACJFEZ_001529"
     CDS             467..1258
                     /gene="lpxA"
                     /locus_tag="ACJFEZ_001529"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HGG0917632.1"
                     /translation="MKKIHPSAVIEDGAILGDDVVIEAYAYVSKEAKIGNGVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKDEQKSGVIIGQNSTIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGDNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSKAFKFL
                     FRQGDLKENAQKLLENNESENVNKMCKFILETKRGIPVYRGKNNA"
     gene            1251..2474
                     /gene="clpX"
                     /locus_tag="ACJFEZ_001530"
     CDS             1251..2474
                     /gene="clpX"
                     /locus_tag="ACJFEZ_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HGG0917633.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKHEHGVDFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKSELQD
                     DDVELFKSNILLIGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVERAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQDFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDNEKENSKV
                     LLEKIEPDDLVHFGLIPELIGRLHVITSLNELNEDDMVRILTEPKNAIVKQYQKLFAI
                     DGVNLKFEDDALREIAKLALERKTGARGLRSIIEEIMVDLMFELPEYKNYDIVITKEV
                     VRDGAKALLIKKKIS"
     gene            2488..3528
                     /locus_tag="ACJFEZ_001531"
     CDS             2488..3528
                     /locus_tag="ACJFEZ_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HGG0917634.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSRAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGANLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDTSIVNYVKEKYNLIIGERTGEEI
                     KIAIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            3518..4267
                     /gene="mreC"
                     /locus_tag="ACJFEZ_001532"
     CDS             3518..4267
                     /gene="mreC"
                     /locus_tag="ACJFEZ_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HGG0917635.1"
                     /translation="MKNKLIFVLVLFFLVFISFYYGGLVKKNVLLVNDTVLEKFYGIK
                     DAITEFFSKHFDQVDQIEQLKARNQELEYAAVLTTSFANQLNRILEDKNSTRYLPQVS
                     LVRVISYVKLNDYKRLWLDFAKVSPNKNKGLIHQGYTIGIAINKDGRAMALLQGDEQC
                     VFSVYIGKNKIPGLIQGEDDKLKVKFIPKWAKINIGDEILTSGLDNIFFSDVPVGIVS
                     AIKDEDMYQSVEVKPYANINIPAYLYIIDSL"
     gene            complement(4262..>5198)
                     /locus_tag="ACJFEZ_001533"
     CDS             complement(4262..>5198)
                     /locus_tag="ACJFEZ_001533"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917636.1"
                     /translation="KSETMLNSKDRTQVILEKSGLSLSKFATILGKDRRTLAKFIEND
                     TVKELDTKSKEKICEFFRYPFKIWESNENEFYTLLNQIENNEIRIIDEGYIGGLKYIF
                     ENENEGSLILHPAFPNPAYRDFIVPLVYQNNDSEEARIYRIKRGEKMRAHSFNASEWY
                     SIKSLLEFCFSPIGNFYTKEQKIQILELMINTFKDNLNKSLYFFDSYDKKIYGLDVFY
                     LSINAKENTMFFKAPLEMLLVEIKNSTLVHKIHEHYTHAKKCPAHILAQDACFIMEIL
                     LQCLKDNLDIKESCDILDKKSPYGNLFKKSLSVDL"
BASE COUNT         1764 a          678 c         1062 g         1694 t
ORIGIN      
        1 tttaaggccg atttaatgat agatgtaatg aaaattcaag aaattttacc tcaccgttat
       61 ccttttttgc ttgttgataa aatcacagag ttaaaagttg gagaagttgt tcgaggatat
      121 aaaaatatca gcataagcga tcatgttttt atgggacatt tcccaggtca tcctatttat
      181 cctggagttt tgattttaga aggtatggcg caaacgggtg gggttttggc ttttgaaagc
      241 atggatgcta aggtagatcc aaaaagtaag gttgtatatt ttacaggtat tgatggagct
      301 aaatttagaa atcctgttcg ccctggagat agacttgatt atgaaatgca agtagttaaa
      361 aatcgtggca atatgtggat ttttaagggt caagcttttg tagatggaaa tttggttgca
      421 gaagcagaac ttaaagctat ggtagtagac aaataagaga gaatcagtga aaaaaattca
      481 tcctagtgct gtaatagaag atggagctat tttaggtgat gatgttgtta ttgaggctta
      541 tgcatatgta agcaaagagg ctaagatagg caatggggtt gttatcaaac aaggggcgag
      601 aatactttca gatactacca taggtgatca ttctcgtgta ttttcatatg ctatagtagg
      661 tgatattcct caagatatat cttataagga cgagcaaaaa agcggagtaa ttatagggca
      721 aaattctact attagagaat ttgctacgat aaattcgggt acagctaaag gcgatggttt
      781 tactcgtata ggagacaatg cttttataat ggcgtattgt catatcgcac atgattgcct
      841 tttaggggat aatattattt tagccaacaa cgcaacctta gcagggcatg tagaactagg
      901 agattttacc gttgtgggtg gtcttactcc tattcatcaa tttgttaaag tgggtgaggg
      961 ctgtatgata gcaggtgcga gtgcgctttc gcaagatata gtaccttttt gtttagctga
     1021 aggaaatcgt gcaagtatta gaagtttgaa tttagtagga attcgtcgtc gttttgataa
     1081 ggatgaagta gataggctta gtaaagcttt taaattcttg tttagacagg gggatttaaa
     1141 agaaaatgct caaaaattat tagaaaataa tgaaagtgaa aatgttaata aaatgtgtaa
     1201 atttatatta gaaacaaaac gcggaatccc tgtatataga ggtaaaaata atgcctagaa
     1261 aatgcagttt ttgtaatgaa gtggaaaatc cacaaagaag aattttagcc aatgaaaacg
     1321 atgatgcatt tatttgtgag tattgtgttg agggggctta tagtattatc tatggggaag
     1381 aaaaagaatt taaagagcca aaacatgaac atggcgttga ttttaaagat attaccccaa
     1441 aagaattaaa agcttatttg gatcgctatg tcatagggca agatagggct aaaaaagttt
     1501 ttagtgtagg ggtttataat cactataaaa gacttttcaa atctgaactt caagatgatg
     1561 atgtggagct ttttaaatcc aatatccttc ttataggtcc tacaggtagc ggaaaaacct
     1621 tacttgctca aactttagct aaatttttgg atgtacctat agccatttgc gatgcgactt
     1681 ctttaaccga agcaggttat gtgggcgagg atgtagaaaa tattttaacc cgtcttttgc
     1741 aagctgctga tggagatgta gaaagagctc aaaagggcat agtatttatc gatgagattg
     1801 ataaaatagc tagaatgagt gaaaatcgct ctatcactcg tgatgtgagt ggagaaggcg
     1861 tgcagcaagc tttgcttaag attatagaag gaagcttggt taatattccg cctaaaggag
     1921 gaagaaaaca tcctaatcaa gattttattc aaattgatac ttcaaatatt ttatttgttt
     1981 gtggtggtgc atttgatggc ttagaaacta tacttaagag aaaattaggc gataaggtcg
     2041 taggcttttt cgataatgaa aaagaaaata gcaaagtttt gcttgaaaag atagagcctg
     2101 atgatttagt gcattttggc cttatacctg aacttatagg gcgcttacat gttataactt
     2161 ctttaaacga gcttaatgaa gatgatatgg taagaatttt gaccgagcca aaaaatgcta
     2221 tcgtaaagca atatcaaaaa ctttttgcta ttgatggcgt gaacttaaaa tttgaagatg
     2281 atgctttaag agaaattgca aaattagcct tagaacgaaa aacgggcgct agaggactta
     2341 gaagtattat agaagaaata atggtggatt tgatgtttga gttaccagaa tataaaaatt
     2401 atgatatcgt tatcaccaaa gaagtggtaa gagatggtgc aaaagcgtta ttaatcaaaa
     2461 agaaaataag ctaaaaaagg gataaaaatg attttagatc aacttatagg atttttttca
     2521 agcgatatgg gtatagactt aggaactgct aatactcttg ttttggtaaa agataagggc
     2581 atagttatca atgagccttc tgttgtggca gttgaaagag aaaggtatgg ttctagggct
     2641 aaaattttag ccgtaggtaa agaagctaaa gatatggtgg gaaaaactcc aggtaacatc
     2701 gaagctattc gcccgatgaa agatggagtt attgctgatt ttgatatgac agaaaaaatg
     2761 attcgttact ttatagaaaa aactcaccgc agaaaaagtt ttttaagacc tagaatcatc
     2821 atttcagtcc cttatggctt aactcaagtt gaaagaaagg ctgttagaga aagtgcctta
     2881 agtgcaggtg caagagaagt atttttgata gaagaaccta tggcagcagc tattggggca
     2941 aatttaccta tacaagaacc taaaggaaat ttagttgtag atataggggg tggaacaact
     3001 gaaattggtg tgatttcact aggtgggctt gttatttcaa agtctattcg tactgcaggt
     3061 gataagcttg atacaagtat agtaaattat gtcaaagaaa aatacaatct tatcattggc
     3121 gaaagaacgg gcgaggagat taagatcgct attggttcag ctatccagct tccaaaagaa
     3181 ctttctatgg ttgtaaaggg gcgcgatcaa gtgagtggac ttttaagtcg tatcgagctt
     3241 acaagtgaag atgttagaga ggcaatgagg gaatatttaa aagaaatagc agatgcttta
     3301 aaaatggtac ttgaaatgat gccacctgat cttgcaagtg atatagtaga aaatggtgtt
     3361 gtcttaacag gtggtggagc attgattcgt ggacttgata aatatttaag tgaaattgtt
     3421 cgcttgccag tatatattgc tgatgaacca cttttagccg tggctaaggg aacgggtaaa
     3481 gctttggagg aaatttcact attgcaacaa ttgacgaatg aagaataagc ttatctttgt
     3541 ccttgtttta ttttttttag tttttatatc tttttactat gggggcttgg taaaaaaaaa
     3601 tgttcttttg gtaaatgata cggtgttaga aaaattttat ggaattaagg atgctatcac
     3661 cgaatttttt tccaagcatt ttgatcaagt agatcaaatt gaacaattaa aagcaagaaa
     3721 tcaagagcta gaatatgcag ctgtattaac tacaagcttt gcaaaccaat taaatcgtat
     3781 tttagaggat aaaaattcaa caagatactt acctcaagtt tctttagtaa gagttatttc
     3841 ttatgtaaaa ttaaatgatt ataaaagatt gtggcttgat tttgccaaag tatctcctaa
     3901 taaaaataaa ggtttgattc atcaaggata cactataggc attgcgatca ataaagatgg
     3961 cagagctatg gcacttttac agggtgatga acaatgtgtt ttttctgtat atataggtaa
     4021 aaataaaatt cctggcctta tccaaggcga agatgataaa cttaaggtta aatttatacc
     4081 caaatgggca aaaattaata taggagatga gattttaaca agtggccttg acaatatctt
     4141 tttttcagat gttccagtgg gtattgtaag tgcaatcaaa gatgaggata tgtatcaaag
     4201 tgttgaagta aaaccttatg ctaacatcaa tatccctgcc tatctttata taatcgatag
     4261 tttataaatc aacacttaga ctctttttaa ataaatttcc atatgggctt tttttatcta
     4321 ggatatcaca gctttcttta atgtctaaat tgtcttttaa acattgtaat aaaatttcca
     4381 tgataaaaca tgcatcttga gctaaaatat gcgcaggaca tttttttgca tgggtataat
     4441 gctcgtgaat tttatgaact agggttgagt ttttaatctc gactaatagc atttccaaag
     4501 gggctttaaa aaacattgta ttttctttag cattgataga aagataaaac acatcaagcc
     4561 cataaatttt tttatcataa gaatcaaaga aatataaaga tttgttaaga ttatctttaa
     4621 aggtattaat catgagttct aaaatttgaa ttttttgttc ttttgtataa aaatttccta
     4681 taggcgaaaa acaaaattca agtaaagact tgatagaata ccactcgctt gcattaaaag
     4741 aatgtgctct cattttttca ccccttttta tgcgatatat tctagcctct tcgctgtcgt
     4801 tattttgata tactaaaggc acgataaaat ccctataagc gggatttgga aaagcagggt
     4861 gtaatataag tgaaccttca ttttcatttt caaaaatata ttttaatcct ccgatgtatc
     4921 cttcgtcaat gatgcgaatt tcattatttt ctatttgatt taagagtgta taaaattcgt
     4981 tttcattgct ttcccatatt ttaaaaggat agcgaaaaaa ttcacaaatt ttttctttac
     5041 ttttggtatc gagttctttt actgtgtcat tttctataaa tttagcaagc gttctacgat
     5101 ctttgcccaa aattgttgca aatttgctca aacttaagcc tgatttttcc aaaattactt
     5161 gtgttctatc tttagaattt aacattgtct cactctta
//
LOCUS       DBBXRO010000116         5131 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.117, whole genome shotgun sequence.
ACCESSION   DBBXRO010000116 DBBXRO010000000
VERSION     DBBXRO010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5131
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.117"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            31..1449
                     /gene="gatB"
                     /locus_tag="ACJFEZ_001534"
     CDS             31..1449
                     /gene="gatB"
                     /locus_tag="ACJFEZ_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HGG0917637.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFININGENKRIGITRAHLEEDAGKNIHENNYSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFESLIALNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAIKLGTLIKRIEEGVISAKAAKDVLAHVF
                     ENPDMDIDETIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPNKVNEILKAKLG"
     gene            1449..2348
                     /locus_tag="ACJFEZ_001535"
     CDS             1449..2348
                     /locus_tag="ACJFEZ_001535"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HGG0917638.1"
                     /translation="MSKIAIIGAGKWGSALYSALSINNTCFMTSRTQRDLPYFVSLEQ
                     ALNCEYLVFALSSQGIYSWLKQNFVNKGQKILIASKGIDTSTCKFLDEIFSEFIDRDK
                     LCVLSGPSFAAEVMQNLPCALVVSGIKEELCKKFASFFPDFIKVYTDDDVRGAEICGA
                     YKNVLAIASGISDGLGLGNNARASLISRGLIEMHRFGKFFGAKEETFLGLGGAGDLFL
                     TATSVLSRNYRVGLALAKEKKLDDILQELGEVAEGVKTAYAIAKISKDKAIYTPIVNE
                     IVQILQGKNVKQAVQNLLKTKDN"
     gene            2357..3538
                     /locus_tag="ACJFEZ_001536"
     CDS             2357..3538
                     /locus_tag="ACJFEZ_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HGG0917639.1"
                     /translation="MLIKNAKIYGENLQDLLIKDGKIVKIGANLDDNDEVLDAQGMTL
                     LPSFVDLCVNLKNDKFSLSNLELLEKECLRGGVGAIILRDCMDFDEESFSLFLQNLKT
                     RKIQIFPSICALDKQGKLKNLATLFNKGAHALELKSSSNANILRVGMQYALMKEKSIF
                     VKCHDENFDDNGVMNDCETGFELGLAGMSAVAESSEVAKIQEIAKFYGVKVIFDLLSL
                     KRSIELLEDENLKLISIHHLIKDDSACAGFNTAAKLNPPLRSKEDKESLKQALKQGKI
                     DFLSSLHSAKSISLKDLAFDEAAFGIHSVCEFMSLCYTFLIKEDLLTWQNLCKATSQN
                     PSEFLGLNSGIIEVGKEANLVLFDQNEEISAPKSSLYANDKLFGKVKLHLVKGEKIIL
                     N"
     gene            complement(3541..5067)
                     /locus_tag="ACJFEZ_001537"
     CDS             complement(3541..5067)
                     /locus_tag="ACJFEZ_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HGG0917640.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGLVAYIIYSYIDKKILKPSEKLGEELKNLKKE
                     RKKFKENYFLNLKTKSMEEQIKELSAIALEDEGQENSFYKNQIKEFKEKEKNIDIYSV
                     LKTHMPIIACIGAAIIAAMFLFKGLNNVSTLDILQNFWIIGIVGTISYVVTFAIVKIV
                     KKTELNKTTDRLFAWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINANSPV
                     PFAALAMFGVALVIGLWFLGKEVITTVGSKLASIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAVLGIGVYNKNANWMMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGL
                     "
BASE COUNT         1786 a          736 c          964 g         1645 t
ORIGIN      
        1 aaataaagca ttaaaattca aggaaaatca atgtttgaag tagttatagg acttgaagta
       61 catactcaac taaacaccaa aacaaaaata ttttgctcat gcgcaacttc ttttggagaa
      121 gctccaaata caaatgtttg tcccacttgt ttggctttac cgggtgcttt acctgtttta
      181 aatgaagaag cggtaaaaaa ggccatcgct tttgggaaag cggtaaatgc cactataaac
      241 aaaaaaagtg tttttaatag aaaaaattat ttttatccag atttgcccaa agcttatcaa
      301 atttcacaat ttgatattcc tatagtagaa aaaggtgagc tttttatcaa tataaatggc
      361 gaaaataaac gcataggtat tacaagagcg catttagaag aagatgcggg taaaaatatc
      421 cacgaaaata attattctaa agtagattta aaccgcgcag gaactccttt gcttgaaatt
      481 gtaagcgaac ctgaacttag aagcagtgat gaagcagtgg cgtatcttaa aaaacttcat
      541 tctatcatac gttttttaga tatttctgat gcaaatatgc aagagggaag ttttagatgt
      601 gatgctaatg taagtataag accaaagggc gatactaagc tttacactag agtagagatt
      661 aaaaatctta attctttccg ttttatccaa aaagctatag aatatgaggt aaaaagacaa
      721 agtgaggctt gggaagatgg aacttacgaa caagaagtag ttcaagaaac cagacttttt
      781 gatacaacaa atttagttac aagaagtatg cgtggtaaag aagaagcggc agaatatcgc
      841 tattttccag atcctgattt gttgcctgtt ttattaaaag atgagttttt ggatattaaa
      901 atccctgaac ttcctgatga gaagaaagca cgctttatag acgagcttgg tataaaagaa
      961 agtgatgctg aggttttaat cagttcttta gaaatgagtc gtttttttga aagtttgatt
     1021 gctttaaatt taaatcctaa gctttgtgta aattggttaa atactgaact tatgggactt
     1081 ttaaaagggg aattaacgat agaaaattcc ccagtagatg cgatcaaact tggtacctta
     1141 atcaaacgca tagaagaggg tgtgatcagt gcaaaagcag caaaggatgt tttagctcat
     1201 gtttttgaaa atccagatat ggatattgat gaaacgattg aaaagttagg gcttaagcag
     1261 gttagcgatg attcagctat cgaagcagta attgagcaaa ttttaaatgc caatgctgat
     1321 aaggttgcag agtataaaag cgggaaggat aagctctttg gtttctttgt agggcagact
     1381 atgaaagaag gtaagggagc ctttaatcct aacaaggtca atgaaatttt aaaagcaaag
     1441 ttgggctgat gagcaaaatt gcaatcatcg gcgcaggaaa atggggcagt gctttataca
     1501 gtgctttaag tattaataat acttgtttta tgacttctcg cacacagcga gatttgcctt
     1561 attttgtgag tttagagcag gctttgaatt gtgaatattt ggtttttgct ttaagctctc
     1621 aaggaattta ttcttggctt aaacaaaatt ttgttaacaa gggtcaaaaa attcttatcg
     1681 cttctaaggg tatagatact tcaacttgta agtttttaga tgaaattttt agcgaattta
     1741 tagatagaga taagctatgt gttttaagcg gtccttcttt tgcagccgaa gtaatgcaaa
     1801 atcttccttg tgctttagtt gtaagtggga taaaagaaga attatgtaaa aaatttgcaa
     1861 gtttttttcc agattttatt aaagtatata cagatgatga tgtgcgcggt gctgaaattt
     1921 gtggcgctta taaaaatgtt ttagccattg ctagcggtat aagcgatggt ttaggacttg
     1981 gaaataatgc aagggcttct ttgatttcta gaggtcttat tgaaatgcat cgttttggta
     2041 aattttttgg agctaaggaa gaaactttct tggggcttgg gggcgcagga gatttatttt
     2101 taactgcaac tagtgtactg tcaagaaatt atcgcgtggg tttggctttg gcaaaagaaa
     2161 aaaaactcga tgatatttta caggaattag gtgaggtggc agagggggta aaaacagcct
     2221 atgctatagc aaagatttca aaagataaag caatttatac acctattgta aatgaaatag
     2281 tacagatctt gcaaggaaaa aatgttaaac aagcagtaca aaatttatta aaaacaaagg
     2341 ataattagga gtttcaatgc tgattaaaaa tgctaaaatt tatggtgaaa atttacaaga
     2401 tcttttaatt aaagatggaa agatagtaaa aataggcgca aatttagacg ataatgatga
     2461 agtattagat gctcaaggaa tgactttatt gccatccttt gtagatttat gtgtaaattt
     2521 aaaaaatgat aaattctccc taagcaatct agaactttta gaaaaggagt gtttaagagg
     2581 aggggttggt gctataatct tgcgtgattg catggatttt gatgaagaaa gcttttcgct
     2641 ttttttgcag aatttaaaaa ctagaaagat tcaaattttt ccaagtattt gtgctttaga
     2701 caaacaaggc aagcttaaga atttagctac gctttttaac aaaggtgcgc atgctctaga
     2761 acttaagagt tcgagtaatg caaatatttt gcgtgtaggt atgcaatatg ctttaatgaa
     2821 agaaaaaagt atttttgtaa aatgtcatga tgagaatttt gatgataatg gcgtgatgaa
     2881 tgattgtgag acaggttttg aattaggtct tgcaggcatg agcgcagtag ctgaaagtag
     2941 tgaagtagca aagattcaag aaatagctaa attttatggt gttaaagtga tttttgatct
     3001 gctcagtctt aagcgttcta tagagctttt agaggatgaa aatttaaaac ttatcagcat
     3061 acatcattta atcaaagatg atagtgcatg tgctggattt aatacagcag caaaactcaa
     3121 tccaccttta agaagcaaag aagataaaga aagtttgaaa caagctttaa aacaaggaaa
     3181 gatagacttc ttaagttctt tacatagcgc aaagtctatt tctttaaaag atctagcttt
     3241 tgatgaggcg gcttttggta ttcatagtgt atgtgaattt atgagccttt gttatacttt
     3301 tcttatcaaa gaagatcttc taacttggca aaatctttgc aaagcaacaa gccaaaatcc
     3361 aagtgaattt ttaggtttaa atagtggaat tatagaagtt ggtaaggaag caaatttggt
     3421 tctttttgat caaaacgaag aaatttctgc tccaaaaagc tcactttatg caaatgacaa
     3481 actttttgga aaggttaaat tacatcttgt aaagggtgaa aaaataattt taaattaagc
     3541 ttaaagtcct aagcttaatt taaatcctag gaatacaagt gctgccatta tcccagcggc
     3601 tggtaaagtg ataatccaag ctagtcctat aggtttcatc atcatccaat ttgcattttt
     3661 attatatacc cctataccca aaactgcacc gattaaaata tgtgttgagc ttactggaat
     3721 tccaaattga gttgctaaaa gtatgactat acttgctcca agttctgcgc taaatcctgt
     3781 ggtagggcgt atagaagcta gcttagaacc cacagtggta attacttctt ttcctaaaaa
     3841 ccaaagtcct ataaccaaag cgactccaaa catagctaga gcagcaaaag gtacgggaga
     3901 atttgcatta atagtaccgt ttttaagaac atctaaaatc gcagcaaaag ggccaatagc
     3961 attagctata tcattagccc catgagagaa agcaaaacta gaagcggtaa aaatttgaaa
     4021 ccaagcaaaa agtctatcgg tcgttttgtt taattcggtt tttttaacaa tctttactat
     4081 ggcaaaggtt acaacatagc ttatggttcc tacaattcct ataatccaaa aattttgcaa
     4141 aatatctaaa gtgctaacat tatttaaacc tttaaataaa aacatagcag caattatagc
     4201 agctccaatg caagcgataa taggcatatg tgtttttaaa acagaataaa tatctatatt
     4261 tttttctttt tctttaaatt ctttgatttg atttttatag aagctatttt cttgtccttc
     4321 atcctctaag gctatggctg agagttcttt gatttgctct tccatacttt tggttttaag
     4381 atttaaaaaa taattttctt taaatttctt tctttctttt tttaaatttt ttaattcttc
     4441 gccaagtttc tctgagggtt tgagtatttt tttatctata taagagtaga tgatataagc
     4501 tacaagtcct cctaaaagag gcgaagctac ccaagaaata gctattctta aaatttcact
     4561 ccatttaacc atagagagtg tttggattcc atcaaatttt aaaagcccca tcataatgct
     4621 agcacctaca atcccaccaa ctatactgtg tgtggttgat acaggtaagc ctttcttggt
     4681 tgcaataaaa atccaaaccc cagagcttaa aagtgcagca agcataatga taacaaaaag
     4741 cataggatct aaagaatttg gaaaaataac aataccgctg cgtatggtct tagtaacttc
     4801 tgcgcctgcg aagattgccc cgcttagctc aaaaacagct gctataatta aagcttgttt
     4861 aatggttact gtttttgcgc caacgcttgt tccaaaagaa ttggctacat catttccacc
     4921 tatattaaat gccataaaaa tgccaaatat agaagcaaga ataaaaagaa tcaattgatg
     4981 ttgcgaaata taaccaaatc cccaaataac aaatgcgata gtactgataa taaaaataac
     5041 aaaagctatg aggttgtctt tttgcattaa taaccctttt ttattttaat tatacactta
     5101 tttactttaa atttgctaat tttatttttt a
//
LOCUS       DBBXRO010000117         5081 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.118, whole genome shotgun sequence.
ACCESSION   DBBXRO010000117 DBBXRO010000000
VERSION     DBBXRO010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5081
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.118"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..637
                     /locus_tag="ACJFEZ_001538"
     CDS             <1..637
                     /locus_tag="ACJFEZ_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HGG0917641.1"
                     /translation="LKNIANAKFLELKEGKDKFQKDENITDSDVYYPLEALSRAKNGD
                     VLRPSEYQNGYIIIKLNKTNPVRTKTFNEAREELMPIYISEQVKKNLEEKAKQNLENF
                     SGTNIGFVSRDTVRNDAKISNILNEAEFSYFLMNVFNSDQNRSYVILNEDKAILYKIN
                     KQKLDMNPEKFQQYRTMLNQNLQSLKANEMKQELIEELKKTYPIKIYYKGK"
     gene            634..2022
                     /gene="ftsA"
                     /locus_tag="ACJFEZ_001539"
     CDS             634..2022
                     /gene="ftsA"
                     /locus_tag="ACJFEZ_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HGG0917642.1"
                     /translation="MILNILGIDLGSTQTCAIVAQKDEEGLKIIGFAKAKTNGVKKGA
                     ITNIELASKSIEEAVRNAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNALIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANSIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENYNRQIRQEIIPQKEVENETKSDFFGENLQENDTIIIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            2039..3151
                     /gene="ftsZ"
                     /locus_tag="ACJFEZ_001540"
     CDS             2039..3151
                     /gene="ftsZ"
                     /locus_tag="ACJFEZ_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HGG0917643.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISNSLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAENGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFKLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     IEISAAANNIEEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDRDSIAKKAAEEAE
                     TPKKNPYLNLRKVSGGFDEEIMAQIETPTFLRRQMD"
     gene            3474..4286
                     /locus_tag="ACJFEZ_001541"
     CDS             3474..4286
                     /locus_tag="ACJFEZ_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HGG0917644.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGVPQVSQGYTDFSLGSLKTTNNPLDLAIT
                     REDAFYLVQTKDGEIRLSKDGNFQLNEEGYLVNKQGYRILSSDYFNNPQNAGIRLPNG
                     AVYINVDKNGSIEVDGVQNARLFIAQVDDIRALQKDGDNVYRIDDLTRIRDLDNSNAV
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            4317..>5081
                     /gene="flgG"
                     /locus_tag="ACJFEZ_001542"
     CDS             4317..>5081
                     /gene="flgG"
                     /locus_tag="ACJFEZ_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HGG0917645.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKGRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGIGVRPTAVTKVFTEGNLKATSTDSLDMAIAGNG
                     FFQIQLPDGTIAYTRNGQFTKDNEGNIVNADGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIATQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDML"
BASE COUNT         1834 a          686 c         1009 g         1552 t
ORIGIN      
        1 gcttaaaaac atagctaatg ctaaattttt ggaattgaaa gaaggtaaag ataaattcca
       61 aaaggatgaa aatatcacag attcagatgt ttactatcca cttgaggctt tatctcgggc
      121 aaaaaatgga gatgtgttaa gaccgagtga atatcaaaat ggttatatta ttatcaagct
      181 taacaaaacc aatcctgtaa gaactaagac ttttaatgag gctagagaag agcttatgcc
      241 tatttatatc agcgaacagg tgaaaaagaa tttagaagaa aaagctaagc aaaatttaga
      301 aaattttagc ggaactaata taggtttcgt aagcagggat actgtaagaa atgatgctaa
      361 aattagtaat atattaaatg aagcagaatt tagttatttt ctaatgaatg tttttaattc
      421 tgatcaaaat cgttcttatg ttattttaaa tgaagataag gctatacttt ataaaattaa
      481 taagcaaaag cttgatatga atcctgaaaa atttcagcaa tatcgcacaa tgcttaatca
      541 aaatttacaa agtttaaaag ctaatgaaat gaagcaggag ttaatcgaag agcttaaaaa
      601 aacatatcca ataaaaattt attataaagg taaataattt tgaatatatt aggaattgac
      661 ttaggttcaa cacaaacttg tgccattgtc gctcaaaaag atgaggaagg tttaaaaatt
      721 attggttttg caaaagcaaa aaccaatggt gtaaaaaaag gcgctattac caatatcgag
      781 cttgcttcaa aatcgatcga ggaagcagtt agaaatgcag agatgatgag cggtgttcat
      841 tatgataaag tagtggtttc tatttcgggc gcttatacta aaagtgttga tagtataggt
      901 gtagtaaata taccaaatca tgaaataggc atcaaagaaa ttcatcgtgc ggtaagcaca
      961 gccaaacaca ctgcaaatct tccgagtggt tatgaaatta ttcatgtttt accttataat
     1021 tttaaggtaa atgatttaga acatgtagat gatcctttgg gtatgagcgg aaatcgcttg
     1081 gaggtttcga ctcatatagt tatttctcaa gaatctcata ttaaaaattt aaaaaaagct
     1141 gttgagttgg ctgatttaag agttgataat atagtccttt ctggctatgc ttcagctata
     1201 gcttgtttag atgatagtga aaaagaacta ggtgctgttt tgattgatat gggtggagcg
     1261 atctgcgata tggttgttca tactggaaat tcaattcgtt ataatgattg cttgcaaatt
     1321 ggatcgatta atattactca agatttatcg atggctttgc acactccttt aaaagaagct
     1381 gagaaaatta aattaaatta tgcagccctt tctcaacaac ctaatgcatt gatacaaatt
     1441 ccttctatgg gagatgaaag aaaagtaaat gaagtttctt tagatatcat ctcaaatgta
     1501 atctatgcaa gagctgaaga aactttaatg attttagcca aaattttaag cgacaatcgt
     1561 tatgcaaata gcataggggg tggcgttgta ttaacaggcg gaatgactaa attagcaggt
     1621 attgatgaat tagctcctgc aacttttgat aatcgttctg ttagacttgc tactgctaga
     1681 aaagatttaa ttactgggtt tagtgaaatt tttaatgatc ctgaaaatac ttgtgctata
     1741 ggactttgtt tatatggtgc gggttatttt acgccttatg aacttgattc aaatgaaaag
     1801 ttaagatata aaggggagat agaaaattat aaccgccaaa ttagacaaga aataattcca
     1861 caaaaagaag tggaaaatga aacaaaatct gatttttttg gcgaaaattt gcaagaaaat
     1921 gatacaataa taatacaaga acaattagat tttaaagagc caaaagagaa aaagcctagt
     1981 gttttttcaa atatttggca taaaataatg aatcaatttt aacaaggaga aagtttttat
     2041 gagcgaattt ttagtagaag agatgcaaca taataaaggc gctaaaatta aagttatagg
     2101 ctgcggtggt ggcggtggaa atatgattaa tcatatggtc aagatgggct taaatgacct
     2161 cgatttaatc gcggctaata ctgatgcaca agctatttca aattcattag caaaaaccaa
     2221 aattcaactt ggcgagaaaa aaacaaaagg cttgggtgcg ggcatgctac cagaggttgg
     2281 agcagagagt gctagagaaa gctttgaaga gattaaagct agtcttagcc aaagtgatat
     2341 cgtttttatt gcttcaggtt ttggtggtgg cacaggaacg ggtgctactc cagtaatcgc
     2401 acaagcagct aaagaaatag gtgctttaac tgtttctgtt gtaactatgc cttttgcttt
     2461 tgaagggaaa caaagaaaaa aacttgctga aaacggactc cttgaattga aaaaagaaag
     2521 tgattctatc cttgtaattc aaaacgaaaa gcttttaagc attatcgata aaaaagcagg
     2581 aattaaagat gcttttaaat tagttgatga tattttggcg cgtgctgtta agggtatggt
     2641 gtctatactt ttagacaatg gtgatatcaa tgttgacttt gctgatgtta gaaccataat
     2701 gagccatcgt ggtttagcac ttatgggcgt aggcagtgct agcggtgaaa atgctatcga
     2761 agaggctctt tctaatgcca tagaatctcc attattagat ggtatggata ttaaaggagc
     2821 taaaggggtt attttacatt ttaaaacaag ttctaattgc tctttaattg aaatttctgc
     2881 tgctgcaaat aatatagaag aaattgttga tgaaaatgca aagattattt ttggttctac
     2941 tacagatgat agcatggaag atagggtaga agtgaccatt attgccacag gatttgaaga
     3001 tagagacagc atagctaaaa aagccgctga agaagctgaa actcctaaga aaaatcctta
     3061 tttaaatctt agaaaagtaa gtggtggttt tgatgaagag ataatggctc aaattgaaac
     3121 tcctactttc ttacgccgcc aaatggacta aaatagaata tttttaagca agatttttac
     3181 ttaagtcttg cttttttaaa atttttacta tttattttaa aatatttttt acccatattc
     3241 ctagaaagaa aactcttatt tcttgggtaa agagatgaat gttgctgctt tttaagcgat
     3301 ttaatgatac ttttggtttt ttagtataat tccttgtaaa aacacaatat gatgcaaatt
     3361 atcattcagt attttatttc tacttgctta atcccctaaa attcattctt tttaaaagtt
     3421 ggaacactct ttgctttata gattaaaaat atcaaaattt ataggtgaaa aatatgcaaa
     3481 atggatatta tcaagcaacg ggtgggatgg taactcagtt taataaactt gatgttatta
     3541 caaacaatct tgccaatatt aacacgagtg gttacaaaag agatgatgta gtaattgcag
     3601 attttaaaag gatttttaaa gaaactcagg atgagttgcc tatagaaaat cacacaagag
     3661 atgcatcaag atttgtcaat actaccatag atggcgttcc tcaagtctct caaggatata
     3721 cagattttag tttaggttct ttaaaaacga ctaataaccc tttggatttg gccattacta
     3781 gagaggatgc tttttattta gttcaaacaa aggatggtga aataagatta agtaaagatg
     3841 gaaattttca acttaacgaa gagggatatt tagtcaataa acaaggatat agaattttaa
     3901 gcagtgatta ttttaataat cctcaaaatg caggaattcg tcttcctaat ggtgcggttt
     3961 atatcaatgt agataaaaac ggaagtattg aggtagatgg cgttcaaaat gcgagattat
     4021 ttatcgctca agtagatgat ataagagctt tgcaaaaaga tggggataat gtttatagga
     4081 tagatgattt aacgcgtatt agagatttgg ataattctaa tgcagtgcgt caaggttttt
     4141 ctcaaggctc taatgtcaat ccagtaaccg aaatggtagg acttatagag gcaaatagaa
     4201 tggtagaaat gtatcaaaaa gttatgacag ctcatatgga tgacttaaac caagaagcta
     4261 tcaataaact tgcagccgtt aaataaaata atataaaata aattaaagga taaaaaatga
     4321 tgagatcact tcatactgct gctacgggaa tggtagcgca gcaaacacaa attgatgtta
     4381 cttcaaacaa tattgcaaat gttaacacag caggttttaa aaagggtcgt gctgaatttg
     4441 ctgatctaat gtatcaagtt atgaaatacg caggaacttc aacttcagcc acaacacttt
     4501 ctccatcggg catagaagtg ggtattggtg tgcgtccaac agcagtgaca aaggttttta
     4561 ctgaaggtaa tttaaaggct acaagcacag atagtcttga tatggcaatt gcgggaaatg
     4621 gtttttttca aattcaactt cctgatggca cgatagctta tacaagaaat ggacaattta
     4681 caaaagataa tgagggaaat atcgttaatg cagatggtta tagactttta cctgaaatga
     4741 ctataccaga gggtgcaact gcgattaatg tggctactga tggcacagtt tctgtaatgc
     4801 ttccaggaga acaacaagaa acacaaatcg gtcaagttga gcttgtacaa tttatcaacc
     4861 cagctggact tcattctatg ggagataatc tttatcttga aacaggggca agcggtgcac
     4921 ctgtagcagg tatagcaacc caagatggac ttggaacaat aagacatggc tttatagagt
     4981 taagcaacgt gcagcttgtt gaagagatga cagatcttat cacaggacaa agagcttacg
     5041 aagcaggttc aaaagctatc acgacgagtg atgatatgct t
//
LOCUS       DBBXRO010000118         5051 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.119, whole genome shotgun sequence.
ACCESSION   DBBXRO010000118 DBBXRO010000000
VERSION     DBBXRO010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5051
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.119"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1052
                     /locus_tag="ACJFEZ_001543"
     CDS             <1..1052
                     /locus_tag="ACJFEZ_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HGG0917646.1"
                     /translation="KLPLNIELNSNIYSLIIKASRKLAELNGLSKSIPNPNILINALI
                     LQEAKDSSEIENIITTHDELFLSQIDESKLTRAAKEVKDYENALKKGYELLKKERLLR
                     NAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNHSDIQELMRNLEQYIND
                     DTLDELDFLVKMAIIHYQFESIHPFYDGNGRTGRIINILYLVYKGLLDLPILYLSAYI
                     VKNKGEYYSLLQKVRDERAILEWIEYILKGVEQTAIKTIETITTIEKMMLNVSEILQN
                     KTNFYSKDFVELLFSHPYTKIDFLIEKLNISRQSASKYLKICENLGVLECIKIGRNHY
                     YINIELLRLFKKGIF"
     gene            1053..2540
                     /locus_tag="ACJFEZ_001544"
     CDS             1053..2540
                     /locus_tag="ACJFEZ_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HGG0917647.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYSEQIGWILFLKFLDDYEEEL
                     KLEAILNDKAYKSILEEKFSWRIWAAPKTSEGKLDVKNALSGDDLLSFVNNELFPYLK
                     SFKDNENFKSIEYKIGGIFEFIDNRIANEHTLREVINLVDELSFSKESDVFALGEVYE
                     KLLKDMGSDGGNSGEFYTPRPLIRAMVEVIDPKAKERIYDPACESCGFLVESFLHILY
                     EDRNKNKKANLSVEELEFLQNDALFGKEKTPLSYAMGVMNMILHEVKSPNIIKTNTLN
                     KKITDITQSEKYEVILANPPFGGKEKEQIQNNFPVKSNATELLFLQHILKSLNNNGRC
                     AIIVPEGVLFQNSNAFVSVKKDLLENFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKR
                     SICGEDDKVYYYELIPPFKLTKNKPLEYAHFEEFLKIYKERKITPHSYLVSIKELEER
                     NYDISAKNPNSKEEKTLREVEEILSTLKANQEKANELLQKIQNII"
     gene            2567..3169
                     /locus_tag="ACJFEZ_001545"
     CDS             2567..3169
                     /locus_tag="ACJFEZ_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RBBP9/YdeN family alpha/beta hydrolase"
                     /protein_id="HGG0917648.1"
                     /translation="MKKIIFLLCLCISFVFAKQIYIVHGYGSDENYGFLPSVAKNLKA
                     KNHEVLLLSFPNAFSPKLDEWMQTMSQNFTKLDENTFFITHSLGGVAVLDFLNSLDER
                     TKIGGVIMVAPFDEPLAKLPILNDFIKPKLDYKKLDNMIIHKIIISAKDDKVVPIWVS
                     ENLAKKLNAKFIQTPNGGHFMESEGFKDLPLVIEELERIK"
     gene            complement(3196..4311)
                     /gene="solA"
                     /locus_tag="ACJFEZ_001546"
     CDS             complement(3196..4311)
                     /gene="solA"
                     /locus_tag="ACJFEZ_001546"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050131 - N-methyl-L-amino-acid oxidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HGG0917649.1"
                     /translation="MTYDIAVIGSGSVGSFAGYYAAKMGLKTCLIDKFQAPHTQGSYH
                     GDTRIFRIAYGEGEKYIPLLQEAYTLWGEFEKEQNIKLFERCGLLNIGSNSTFMQNVL
                     SSVKNYDLKAKILNAKELQENYNICVSDDFFGVLETDTGFVYSDLSVKSAINAACKLG
                     AHTLCDEIVRICKENGVYKIQTQNSSIQAKQILISAGSYVNEVLGVCEFDLPKVPVGI
                     RRKVVNWFDTDSYKLSQGFPAFILEFEDDYFYGFPDFADGLKVGRDKVGEIISTREER
                     VEFGSYEQDTLDIGKHIKEFFPDLKDFSKGSVCTYPLSPDDDFIIDFLDENLFFMGGL
                     SHGFKFAPALGLLGVKALQTQKLDPSIKQYFSLKRFG"
     gene            complement(4550..>5051)
                     /locus_tag="ACJFEZ_001547"
     CDS             complement(4550..>5051)
                     /locus_tag="ACJFEZ_001547"
                     /EC_number="1.-.-.-"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005023508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HGG0917650.1"
                     /translation="LIIFAHTFWEDSKVNKALFESIKNSKQVQIHNLSEIYKEGKIDV
                     SKEMALLKNADKIIFQFPLFWFSTPALLKEWQDRVLTAILYGENKELLKDKKFQIVTT
                     LGGAQESYDGHHGATLEELLKPICYTFEYLGCKSLKPFAIFSADANKLDLKAYQDAIS
                     QNSGCS"
BASE COUNT         1862 a          821 c          814 g         1554 t
ORIGIN      
        1 caaaactacc tctaaatata gaattaaatt caaatattta cagccttatc atcaaggctt
       61 caagaaaatt agcagaactc aatggactta gcaaaagtat ccctaatcca aacattttaa
      121 tcaatgcttt aattttgcaa gaagcaaaag attcgagtga gatagaaaac ataatcacaa
      181 cccatgatga acttttttta tctcaaatcg atgaaagcaa acttacaaga gcagcaaaag
      241 aagtaaaaga ctatgaaaat gctttgaaaa aagggtatga gcttttaaaa aaagagcgtt
      301 tgttgagaaa tgcacatatt ttagaaattc aaaaaagatt agaaagaaac aatgcaggct
      361 ttagaaaaca aagtggcaca atgcttaaaa accctatcac aggagaaatc aaacacatac
      421 ccccacaaaa tcatagcgac atacaagagc ttatgagaaa tttagagcaa tacattaacg
      481 atgatacttt agatgaacta gattttttag taaaaatggc aatcattcat tatcaatttg
      541 aaagcattca tccattttat gatggcaatg gcagaacagg caggattata aatatacttt
      601 atttggttta taaaggcttg cttgatttgc ctatcttata tttgagtgct tatattgtaa
      661 aaaataaagg ggagtattat agtcttttgc aaaaagtgcg agatgaaaga gcgattttag
      721 aatggataga atacatacta aaaggcgtag aacaaactgc tataaaaact attgaaacta
      781 ttaccacgat agaaaaaatg atgctaaatg taagcgaaat tttgcaaaat aaaaccaatt
      841 tttatagtaa agactttgta gagcttttgt tttctcatcc ttatacaaag atagattttt
      901 tgatagaaaa attaaatatt tctaggcaaa gtgcctcaaa atatcttaaa atttgtgaaa
      961 atttaggggt attagaatgc attaaaatag gtagaaatca ttattatata aatatagaac
     1021 ttttaagact ttttaaaaag ggaatttttt aaatgcaaaa taaaatcgac aaaatcacag
     1081 acatactaag acgcgatgat ggtataagcg gtgcgatgca ctatagtgag caaatcggct
     1141 ggatattgtt tttaaaattt ttagatgatt atgaagaaga attaaaacta gaagctatct
     1201 taaatgataa agcatataaa agcattttag aagaaaaatt cagctggaga atatgggcag
     1261 ctccaaaaac aagtgaaggc aaacttgatg taaaaaatgc tttaagcgga gatgatttgc
     1321 ttagctttgt aaataacgag ctttttccat atctaaaaag ctttaaagat aatgaaaatt
     1381 tcaaaagcat agagtataaa ataggcggaa ttttcgagtt tatagacaat cgcatagcca
     1441 atgaacacac cttaagagag gttataaatt tagtcgatga gctaagcttt agtaaagaaa
     1501 gtgatgtatt tgccttaggt gaagtttatg aaaagctttt aaaagatatg ggaagcgatg
     1561 ggggaaatag tggagaattt tacacgccac gccctttgat aagagctatg gtagaagtga
     1621 tagatcctaa agcaaaagaa aggatttatg atcctgcttg tgagagttgt gggtttttag
     1681 tagaaagctt tttgcatatc ttgtatgaag acaggaataa aaacaaaaaa gcaaatttaa
     1741 gcgtagaaga gcttgaattt ttacaaaatg atgcattatt tggcaaagaa aaaaccccac
     1801 taagctacgc aatgggcgtg atgaatatga tcttgcacga ggtaaaatct ccaaatatca
     1861 tcaaaacaaa cactctaaat aaaaaaatca cagacataac ccaaagcgaa aaatatgaag
     1921 tgattttggc aaatccaccc tttggaggca aggaaaaaga acaaattcaa aacaactttc
     1981 ccgtaaaatc aaacgctact gagcttttat ttttacaaca tatcttaaaa tctttaaaca
     2041 acaacggaag atgtgctata atagtgcctg agggcgtgct ttttcaaaat tcaaatgcct
     2101 ttgtaagcgt gaaaaaagac ttgctagaaa atttcaatct cgaatgcgtt ttaagcttgc
     2161 caagcggggt atttttacct tatagtgcgg taaaaaccaa tgtgcttttt ttctcaaaag
     2221 gaaaaagaag catttgtggt gaagatgata aggtgtatta ttatgagctt ataccacctt
     2281 ttaaactcac caaaaacaag cctttagaat acgcacattt tgaggaattt ttaaaaatct
     2341 ataaggaaag aaaaatcact cctcattctt atctagttag cataaaagaa cttgaagaaa
     2401 gaaactatga tataagtgct aaaaatccaa attccaaaga agaaaaaacc ttgcgtgaag
     2461 tagaagaaat cctaagcact ttaaaggcaa atcaagaaaa agccaatgag cttttgcaaa
     2521 aaatacaaaa tattatctaa actactgaat tttagaaagg acacttatga aaaaaatcat
     2581 ctttttgctt tgtctttgca ttagctttgt ttttgctaag caaatttata tcgtgcatgg
     2641 ctatggcagc gatgagaatt acggattttt accaagtgta gcaaagaatt taaaagctaa
     2701 aaatcatgaa gttttacttt taagtttccc taatgctttt tcgcctaagc ttgatgagtg
     2761 gatgcaaacc atgagtcaaa atttcacaaa acttgatgaa aatacctttt ttatcacgca
     2821 ttctttaggt ggagttgcgg tgcttgattt tttaaattcg cttgatgaaa ggactaaaat
     2881 cggcggtgta ataatggttg caccctttga tgaacctttg gcaaaattgc ctattttaaa
     2941 tgattttata aagccaaaat tagactataa aaagcttgat aacatgataa ttcacaaaat
     3001 catcatcagc gcaaaagacg ataaagtcgt gccaatttgg gtgagtgaaa atttagccaa
     3061 aaagctaaat gctaaattca tacaaactcc aaatggtgga cattttatgg aaagcgaagg
     3121 ctttaaagat ttgcctttgg ttatagaaga attagagcgt attaaataac ccttaaatat
     3181 aagggttata cagctttatc caaaacgctt taggctaaaa tactgcttta tactcggatc
     3241 tagcttttga gtctgcaatg ctttcacgcc taaaagtcca agtgcgggag cgaatttaaa
     3301 cccatgacta agcccaccca taaaaaagag attttcatct aaaaaatcga tgataaaatc
     3361 atcatcagga cttaaaggat aggtgcatac actgcccttg ctaaaatctt ttaaatcagg
     3421 aaaaaattct ttgatatgct tgcctatatc aagagtatct tgctcataag atccaaattc
     3481 cacgcgttct tcgcgggtgc taatgatctc ccctacttta tctctaccca cttttaatcc
     3541 atctgcaaaa tcaggaaaac cataaaaata atcgtcttca aattcgagta taaacgctgg
     3601 aaaaccttgt gagagtttat aagaatccgt atcaaaccaa ttcaccactt tgcgtctaat
     3661 gcccacaggc acttttggca agtcaaattc acacacgccc aatacttcat tgacataact
     3721 tcctgcactg attagaattt gttttgcttg tatgctggaa ttttgtgttt gtattttata
     3781 cactccattt tctttgcata tgcgcacgat ttcatcacac aaagtatgcg caccaagctt
     3841 gcaagcagca ttgatagcac tttttacact caaatcacta tacacaaagc ctgtatctgt
     3901 ttctaacacg ccgaaaaaat catctgatac gcaaatatta taattttctt gcaattcttt
     3961 ggcatttaga atttttgctt taagatcgta atttttcaca cttgagagca cattttgcat
     4021 aaaagtagaa tttgagccga tatttaaaag cccacaacgc tcaaaaagct tgatattttg
     4081 ctctttttca aattctcccc aaagcgtgta tgcctcttgt aaaagcggta tatacttttc
     4141 accctcgcca taagctatac gaaaaatcct tgtatcacca tgataagaac cttgagtatg
     4201 aggtgcttga aatttatcga taagacaggt ttttaagccc attttagccg cataataccc
     4261 agcaaaactc cccacactac cacttccaat aaccgctatg tcataagtca ttttatcttc
     4321 ctttatatcg ccaatttgat acataaaatt tggaaaaaat tatactataa atattagttc
     4381 agtgtttata aaaaataaaa atttatccct tgcttagaaa ttttgaggat taaaatttaa
     4441 ttaaaaaatt taaggcgatc aatcacctta aattcaagct ttttatattg ctagagtttt
     4501 agaaattttt tgtaagttgt aagcattttc ttaaatttat aaaaagtatt taagaacacc
     4561 ctgaattttg acttatagcg tcttgataag cttttaaatc aagcttattt gcatctgcac
     4621 taaagattgc aaaaggcttt aaactcttac atcctagata ttcaaatgta taacaaatcg
     4681 gctttaaaag ctcttctaaa gtcgcaccat gatgcccatc ataactctct tgcgcgccgc
     4741 ctaaagtcgt tacaatctga aattttttat cttttaaaag ttctttattt tctccataaa
     4801 gaattgctgt taaaacccta tcttgccact cttttaaaag cgctggagtg ctaaaccaaa
     4861 aaagtggaaa ttgaaagatg attttatcgg cattttttaa caaagccatt tctttactga
     4921 catcgatttt accctctttg taaatttcgc taagattgtg aatttgtact tgttttgaat
     4981 ttttaatgct ttcaaacaaa gccttattta ccttagaatc ttcccaaaat gtatgtgcga
     5041 aaatgattaa a
//
LOCUS       DBBXRO010000119         4907 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.120, whole genome shotgun sequence.
ACCESSION   DBBXRO010000119 DBBXRO010000000
VERSION     DBBXRO010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4907
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.120"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(131..2689)
                     /gene="flgE"
                     /locus_tag="ACJFEZ_001548"
     CDS             complement(131..2689)
                     /gene="flgE"
                     /locus_tag="ACJFEZ_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HGG0917651.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTKGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTNKNTDVAINGDGFF
                     MVSDDGGLTRYLTRDGDFKLDAYGNFVNNAGFVVQGWNINWDNQTIDSSRSPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGSLFNANGTGLNLREGQGIWVSYADAKFTTDRANGANVFD
                     PNLTVAQQNNVIFWGNKDISVTLDINLNGVRIQNDNIRSLDEAIAYINTFTAPTDTRD
                     GTGVKAVKKADGSGIEFVNDNADGTTDNMKNIDLTVNVGNSAGERNTINYDANTGVFS
                     PQGGNLTTAQNDTDWIAGAAQVGQPQNVKVVTAHKYIYSSNPVTIPPMINPDGGPAFQ
                     PNNGNRPTDPASANYWDAIQGSLKNTTERTFRTTEDLRELLQRDARYGVDYNGSGIID
                     NATPTFDANDINQAVKVVVTENGNFAISNANETSTIPANAGAGNTQVTTNPKNMSFNI
                     TAYSNKQGTVSTNDAFAKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKH
                     TLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLASYT
                     PRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAI
                     RVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGT
                     GGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            complement(2893..3369)
                     /gene="ruvC"
                     /locus_tag="ACJFEZ_001549"
     CDS             complement(2893..3369)
                     /gene="ruvC"
                     /locus_tag="ACJFEZ_001549"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HGG0917652.1"
                     /translation="MKILGIDPGSRNCGYAIIEANKGKNTLIEAGLIKIKPSTLQYQI
                     TELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYT
                     PLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV"
     gene            3472..4794
                     /gene="dnaA"
                     /locus_tag="ACJFEZ_001550"
     CDS             3472..4794
                     /gene="dnaA"
                     /locus_tag="ACJFEZ_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HGG0917653.1"
                     /translation="MNPNQILENLKKELSENEYENYIAILKFNEKQSKADFLVFNAPN
                     ELLAKFIQTKYGKKISHFYEVQSGNKASVLIQAQSQKHSSKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKSVMKD
                     HIKEKKEDISIEDILSLICKEFNIKPSDVKSSKKTQNVVTARRIAIYLARELTSLTFS
                     QLANFFVMKDHTAISHSVKKIKELMEDDEQIKTKIEELKNKILTKSQS"
BASE COUNT         1638 a          880 c          774 g         1615 t
ORIGIN      
        1 gttagcaata aattgaaggc agttcaagcc taagcctagt attacaagac taccaagata
       61 ggcttgtaaa gcaaggcttg ctcccttaaa gggagcaaaa aacaatattt tatagaatac
      121 taagcttaaa ttattgttta agctggatta gagtttgaag catttgatca ctcgttgaaa
      181 tggtttttga gtttgcttga taacctcttt gaatgataat aagctctgtt aaagaacgac
      241 ttaaatccac atttgacatt tcaagagctg aggttttcat ctcaccacga cctcctgttc
      301 ctgcttcgcc tactactata gccccactat ttgcagtgac tttaaaaaga tttccaccaa
      361 tttcctcaag acctgagtta tttgccactg aagccattgc tatttttgct acagcaaagg
      421 ttttgccatt agtaaattca cctaagatat tacctttatc atccacacgg atagcatcag
      481 gttttaagtt acctgaagta taaccatcag ttgcctgtcc tgttagagtt gaagcagaat
      541 ttgaacttac aaggccgtca ttgcttccgc ttgttccaaa ggaaagtttg atttgttgat
      601 ttggtgcggc accattgttt ggtgaaaaat ttatcgttct tggtgtataa ctagctaaag
      661 agccgtcatt gttaaatctt gctgttccta cgatgatatt tgtaggacct tcgcctgtag
      721 tgttgatctc agcaggttca ggtacacgga tgatcatttg ccattcatta cccccatctt
      781 gagtggtgct ttgcttaaca aactgtactt ctaaagtgtg ttttgaacct aaagaatcat
      841 aaatttcaag tcctgctgaa aaagcagaaa gcttaagttg ttcgctttct ttgatctgac
      901 ctccgactgt taaaactcca tcaaaagctt taaaaatttt agcaaaggca tcattggtac
      961 ttacagttcc ttgtttatta ctataagctg ttatattaaa actcatattt tttggatttg
     1021 ttgtaacttg tgtattacct gcaccagcat tagctggtat agtagaagtt tcatttgcgt
     1081 tagaaatagc aaaattacca ttttcagtta ccactacttt tacagcttga ttgatatcat
     1141 tagcgtcaaa tgttggagta gcattatcta ttataccact accattatag tcaaccccat
     1201 acctagcatc tctttgcaaa agctctctta aatcttctgt ggttctaaaa gttctttcag
     1261 tagtattttt taaactccct tgtatagcat cccaataatt agcagaagcg ggatcggttg
     1321 gtctattacc gttattaggc tgaaacgccg gtccaccatc aggatttatc ataggtggta
     1381 tagtaacagg atttgaacta taaatatact tatgtgctgt cactacttta acattttgtg
     1441 gttgacctac ttgagctgct ccagctatcc aatcagtatc attctgagca gttgttagat
     1501 taccaccttg aggagaaaaa acaccagtat tagcatcata attaatagta tttctttctc
     1561 ctgcagaatt cccaacatta actgttaaat cgatattttt catattatct gttgtaccat
     1621 cagcattatc attgacaaat tctatacctg aaccatctgc tttttttacc gcttttactc
     1681 ctgttccatc ccttgtatcc gttggtgcgg tgaaggtatt gatataagct atggcttcat
     1741 ctaagcttct tatattatca ttttgaattc ttactccatt taaattaata tccaaagtta
     1801 cagatatatc tttattaccc cagaaaataa cattattttg ttgtgctact gttaaattag
     1861 gatcaaagac atttgcacca ttagctctat ctgtagtaaa ttttgcatcc gcataagaca
     1921 cccaaattcc ttgaccttct ctaagattta atcctgtgcc attagcgtta aaaagtgatc
     1981 ccgcatccac acccttttcc gtcacttcta cagaattctt agaagtcgta taaaactgag
     2041 tagttcctgt atcattttca tcttcaggtc tttgagtttt attattccat ccatgaacag
     2101 aatcaagtgc ataaagattt ctacttgaag ttcctatatt taaaccacta tttaaatttg
     2161 ctttgatagc tacttctgta gattttgctg cagggatatg catacctgga tcgataaaaa
     2221 tattttgcgg acttcttgaa ctgtctatag tttgattatc ccaattgata ttccaccctt
     2281 ggacaacaaa acctgcatta ttaacaaaat ttccataagc atcaagttta aaatccccat
     2341 ctcttgtaag atagcgagta agccccccat catcactcac cataaaaaag ccgtctccat
     2401 ttatagccac atcggtgttt ttatttgttg tttgcactga gccttgagag tgaattctag
     2461 tcgtagaact tactgaaacg ccaagaccga tttgaagtgg attagatcca cctcttccat
     2521 cagttggagc tgtagcgatt ttcacagttt ggctaaacat agtcccaaaa tctgcacggg
     2581 agtatttaaa acccttggta ttaacatttg aaatgttatt accttcaaca tccatcgcaa
     2641 cttgatgtgc ttgtagtccg cttacgccag accaaagtga tctcatcatc ttaaatcctt
     2701 tataaaatat tgctttaaaa aatttaacgc tttggcttta aaaaactttt gcgtttatgt
     2761 gaagtttaca agcaagttct gttccaactt ttgaaatttt ttatgaattt tttaaaaatt
     2821 tatagaaaaa atttaaaggt attttaggag tttatgaagc tttgggcttt tgtgtaataa
     2881 aaattactaa aatcacaccc taactcttaa atttgctgca tgggttaaag ccactgcgat
     2941 agcatctgtg atatccaaag gcttgatatc tttactaagt cctaaaagcc tttttaccat
     3001 aaaagcaact tgttctttag ttgctttggc ttttcctgta acggcttttt ttacttgtaa
     3061 gggagtgtat tctgcaaaat ctccatgaat ttgaagaatt tttaaagata gggctccgcg
     3121 aaattgtgcg agttttaaaa cggtttttgg attgtaagca aaaaagatat cttctatagc
     3181 tacctcatca aaagaatgat ttttaaaaat caagtccaaa ccctcgcaaa gctctgtgat
     3241 ttggtattgt aaagtactgg gctttatctt tataagtcct gcttcgatta gggtattttt
     3301 acctttattt gcttctatga tagcataacc acaatttctt gaaccaggat ctatacctaa
     3361 aattttcaat cttccacctt aatcaataat gaaatgcaaa agcttgattt taaccttttt
     3421 ttataaaatt taagataaaa tttataagct tacaaagact aaagagagat tatgaatcca
     3481 aatcaaatac ttgaaaattt aaaaaaagaa ttaagtgaaa acgaatacga aaattatatc
     3541 gctatcttaa aatttaacga aaaacaaagc aaagcagatt ttctagtctt taacgctcct
     3601 aatgagcttt tagccaaatt catacaaaca aaatacggta aaaaaatttc acatttttat
     3661 gaagtacaaa gcggaaataa agcgagcgtt ttgatacaag cacaaagcca aaaacatagt
     3721 agcaaaagca ctaaaatcga tatcgctcac atcaaggcgc aaagtacgat tttaaatcct
     3781 tcttttactt ttgaaagctt tgtagtgggg gattctaaca aatacgctta tggagcttgt
     3841 aaagctatct cacaaaaaga caaactggga aaactttata atcctatctt tatctatggg
     3901 cctacagggc ttggaaaaac gcacttgctt caagctgtgg gaaatgcaag tttggaaatg
     3961 ggaaaaaaag tgatttatgc tacgagtgaa aattttatca atgattttac ttcaaattta
     4021 aaaaatggct ctttagataa atttcacgaa aaatatagaa attgtgatgt tttactcata
     4081 gatgatgtgc aatttttagg aaaaacagac aaaattcaag aagagttttt ctttatattt
     4141 aatgagatta aaaataatga tgggcaaatt atcatgacaa gtgataaccc acccaatatg
     4201 ctaaaaggta tcaccgaacg cttaaaaagt cgttttgctc atggtatcat agcagatatc
     4261 actccacctc aactggatac aaaaatagcc atcatacgca aaaaatgcga atttaatgat
     4321 atcaatcttt ctaatgatat cattaattat atcgccactt ctttagggga taatataaga
     4381 gaaatagaag gtatcatcat aagcttaaat gcttatgcta acatacttgg acaagaaatc
     4441 acccttgagc tagcaaaaag cgtgatgaaa gatcatatca aagaaaagaa agaagatata
     4501 agcatagaag acattttatc tttgatctgt aaagaattta acatcaaacc aagcgatgtg
     4561 aaatctagca aaaaaactca aaatgtcgtt actgcaagac gcatagcaat ctacctagca
     4621 agggaactta caagccttac tttttcacaa cttgctaact tttttgtgat gaaagatcac
     4681 acagctattt cacatagtgt gaaaaaaata aaagaactca tggaagatga tgagcaaata
     4741 aaaacaaaaa tcgaagaatt aaaaaacaaa attcttacaa aaagtcaaag ttaagtgaag
     4801 aaatgtgaaa agaaaaaaag caaaatgtga aaaaatataa ttaagcaaaa tatggtaaaa
     4861 tacaaattta ataatttttt gctaaagaat ttcacaattt caatagt
//
LOCUS       DBBXRO010000120         4896 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.121, whole genome shotgun sequence.
ACCESSION   DBBXRO010000120 DBBXRO010000000
VERSION     DBBXRO010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4896
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.121"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..474)
                     /locus_tag="ACJFEZ_001551"
     CDS             complement(<1..474)
                     /locus_tag="ACJFEZ_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HGG0917654.1"
                     /translation="MLKTKNIFITFFVLLILCFGVIFYTLTNSYLNFLLLKQYEQKIK
                     SLDDVLKFSLLEDLNSNNIKEFAQDTRADFIILKDDFEISSVLNADLFLNLEENKIYD
                     LNSKRVLVKKFTYKDYKYMIIVYPRFLNLQIFWLKISISFGIYFMLVFILVFFMGR"
     gene            complement(468..1130)
                     /locus_tag="ACJFEZ_001552"
     CDS             complement(468..1130)
                     /locus_tag="ACJFEZ_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HGG0917655.1"
                     /translation="MSKSKILIIEDDIDLNDLLSLRLKACDYQIFSLLDFKGVEDLLD
                     SEQIDLLIVDRNLPSGDSLDRIKELRKQGYKEAVIFLTAKTLHQDLLEGFESGCDDYM
                     CKPFDFNELLLRIKAILKRHKREEEKLVFKDFSLDLINYEFFYKNEKLDVSNLEYELL
                     KCFFENPNTLLTRQFLSENVWKDDTTSDKTINIALTRLRNKFPKLKEHIISVRGIGYK
                     IC"
     gene            complement(1117..2700)
                     /gene="serA"
                     /locus_tag="ACJFEZ_001553"
     CDS             complement(1117..2700)
                     /gene="serA"
                     /locus_tag="ACJFEZ_001553"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HGG0917656.1"
                     /translation="MKKKIIVCDAILDKGVELLRKAEDIELIEAAKVPKNELMDMLAD
                     VEVAITRSSTDVDVNFLNHAKKLKALIRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLSSARSFVNAHNFLKNERKWEREKWYGVELMGKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKSLDEILTQSDFITIHTPKTKETDGMIGA
                     NEIAKMKDGIRLINCARGGLYTEEALCEGLKSGKIAWLGIDVFKKEPATNHPLLDFEN
                     VSVTSHLGANTLESQDNIAREACEQALNAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGVIGEYATSMLTFAAVGALSGILGEKINYVNAEF
                     VAKEKGVDLSCETLPNSGYNNKLSVKIITENSNINVSGTVFNENEQRIVGLNGFQTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLASKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLEELRQLEACIFVQYVEI"
     gene            complement(2697..3185)
                     /locus_tag="ACJFEZ_001554"
     CDS             complement(2697..3185)
                     /locus_tag="ACJFEZ_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917657.1"
                     /translation="MKKYATISILSILLLILLIVVFVLLWKFKANSNFIPEFAKDTNT
                     HQIEERQTQELTWREELAKWPSKDFTPAVEQFTLHFDADTSELKEKNKYYQLVVNKHD
                     IYSMFCLRQTLNSFNVKYFLLKSGESPEIFLDTGNKNLIDDIIKELKKYKINTEAKEI
                     WL"
     gene            complement(3188..4858)
                     /locus_tag="ACJFEZ_001555"
     CDS             complement(3188..4858)
                     /locus_tag="ACJFEZ_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HGG0917658.1"
                     /translation="MSEVNKKVQNNLEDYLEDEDFGQLLEAFDKSREETIIEGVIVEI
                     KNDEVYVDIGRKSEGILALNEIQDENANLLFKVGDSIKVAVVGSRGSRSLLSHKKALR
                     KEKVIDFIQNYKEDDEYIFEVKVVGKNKGGLVVVNDDDVEFFLPKSQYGFKENNNLIG
                     KTFKVKIIKVDKEEQSIIVSRKKTLDDERKKRKELINNIAQQEGLIEGVVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPSILYKEGDKVPVKVVKYDKDRKHLSLSIKAALPD
                     PWGEIKDSLEVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIS
                     KGQEIDVEVIEINSDERRLRVSLRNLLSKPFDEFMKNHKIGDVIEGEVTSTTSFGAFV
                     KIGSVEGLLHNEDASWDRNEKCKDKFNNGDIIKVKIIKIDEEGQKISLSIKELSESPV
                     QEYAKNHKVGDIVKGKIRDIKDFGVFVELNKNVDALIHKEDISASTLENLKIGDEIEA
                     AIAFIDEKKNRIRLSVKNLVRIKEREVLNEINSDDKVTLGDIIKDQLA"
BASE COUNT         1587 a          919 c          591 g         1799 t
ORIGIN      
        1 tcttcccata aaaaatacta aaataaaaac aagcatgaaa taaatcccaa aacttatgct
       61 gatttttagc caaaaaattt gcaaatttaa aaatcttgga taaacaatga tcatatattt
      121 atagtcttta taggtaaatt tttttacaag aactcttttt gaatttaaat cataaatttt
      181 gttttcttct aaatttaaaa ataaatccgc atttaaaacc gaagaaatct caaaatcatc
      241 tttcaaaata ataaaatccg cccttgtatc ttgtgcaaat tctttgatat tgttagaatt
      301 taaatcttct aaaagagaaa attttaaaac atcatcaagg cttttgattt tttgttcgta
      361 ttgttttaag agtaaaaaat tcaaataaga atttgtaagc gtataaaata tcacaccaaa
      421 acacaaaatc aacaaaacaa aaaaagttat aaaaatattt ttagttttca acatatctta
      481 taaccaatgc ccctaacgct tataatatgc tctttaagct ttggaaattt gtttcttagt
      541 cttgttaatg ctatattgat cgtcttgtca cttgtggtat catctttcca tacattttca
      601 cttaaaaatt gtcgtgtcaa taaagtattg ggattttcaa aaaaacattt taaaagctca
      661 tattccaaat ttgaaacatc taatttctca ttcttgtaga aaaattcata attgatcaaa
      721 tccaaagaaa aatctttaaa aactagcttt tcttcttctc ttttgtggcg ttttaaaata
      781 gctttaatac gaagtaacaa ttcattaaaa tcaaaaggtt tgcacatata atcatcgcag
      841 ccactctcaa aaccttcaag taaatcttga tgcaaggttt tagcggttag aaaaatcacc
      901 gcttctttat aaccttgctt tcttagctct ttaatcctat ctaaagaatc cccgcttgga
      961 agatttctat caactatcaa aagatcgatt tgctcactat ctagcaaatc ttcaactcct
     1021 ttaaaatcta acaaggaaaa aatttgataa tcgcaagcct taagtcttaa actaagcaaa
     1081 tcatttaaat ctatatcatc ttctatgata agaattttag atttcgacat attgtacaaa
     1141 tatacacgcc tctagttgtc ttaattcttc taaaacttct ttttgcactt tttcgtcgat
     1201 caataccact gctaaagcat atccaaaacc atctctaccc aatctaaaat cagcgatatt
     1261 gatattttta gatgctaaga cagagctgat tttagcaata acccctggga tatctttatt
     1321 tttgaaaata atcatttttc cttttggctt gaaatcagtt tgaaagccat ttaatccaac
     1381 tatgcgttgt tcattttcat taaatacagt tcctgaaaca ttaatatttg aattctctgt
     1441 gatgatttta acactaagtt tgttgttata accgctattt ggaagggttt cgcaagataa
     1501 atctacacct ttttctttgg caacaaattc agcattaaca taatttattt tttcacctaa
     1561 aattccactt aaagctccta cagcagcaaa tgtaagcatt gaagtagcat attcgcctat
     1621 caccccttct gcttctaatt taatactttt tataggattt ttatcaattt gaactgctaa
     1681 aaatgccatc ttagaaacaa gctcgatgta aggtgctaca aaaggtggta aatcctcagt
     1741 tttaataggt aaattaagag cattaggata tgccacacct ctagccgcat ttagggcttg
     1801 ttcacaagct tctcttgcaa tattgtcttg actttctaga gtattagctc caagatgaga
     1861 ggttactgaa acattttcaa aatctaaaag aggatggttg gtagcaggtt cttttttgaa
     1921 aacatcgata ccaagccaag ctattttacc actttttaag ccttcgcata gagcttcttc
     1981 tgtatataag cccccgcgag cacaattaat aagtcttata ccatctttca tttttgcgat
     2041 ttcattagca ccaatcatac catcagtttc tttagttttt ggcgtatgga tggtgataaa
     2101 atcgctttga gtaagaattt catccaaact ttttgcttgc tccatatcta agtctgtgat
     2161 tttagaagct gaaatatatg gatcgtaggc tagaattttc ataccaaaag ctttggcacg
     2221 gatggctaca cgcgaaccta tatttccaaa accgataaca cccaaggttt tacccatgag
     2281 ctctacgcca taccactttt ctctttccca ttttctttca ttctttaaaa aattatgtgc
     2341 attaacaaaa cttctagcag aacttagaag atgagccata gtaagctcta ctgcagcaat
     2401 ggtattagca gttgggacat tcattactat aacaccgcgt ttggaacatt cagggatatc
     2461 aacattatcc acccctactc ctgcgcgtat aagagctttg agttttttag catgatttaa
     2521 aaaattgaca tctacatcag tagaacttct agtaatagcg acttctacat ctgcaagcat
     2581 atccattaac tcattctttg gaactttagc agcttctata agctcaatat cctcagcttt
     2641 tcttaaaagc tctacaccct tatctaaaat tgcatcacaa acaataatct tttttttcat
     2701 aaccaaatct ccttcgcttc tgtgttaatt ttatattttt taagttcttt gataatatca
     2761 tcaattaaat ttttattgcc cgtatctaaa aagatttcag gactttcgcc ggattttaat
     2821 aaaaaatact tcacgttaaa agaatttaaa gtctgtctta aacaaaacat ggagtaaata
     2881 tcatgcttat taacaacaag ttgatagtat ttgttttttt ctttaagctc actagtatct
     2941 gcatcaaaat gtagagtaaa ttgctctacg gctggagtaa aatctttact aggccatttg
     3001 gctaattctt ctcgccaagt gagttcttgg gtttgccttt cttcaatctg atgcgtattt
     3061 gtatctttag caaattcggg aataaagtta gaatttgctt taaatttcca aagcagtaca
     3121 aaaacgacaa taagcaagat gagtaataaa atactcaaaa tgcttatagt tgcatatttt
     3181 ttcatcatta agctaactga tctttaatga tatcacctaa agttacttta tcgtcgctat
     3241 tgatttcatt taatacttct cgctctttaa ttctaaccaa attcttaaca cttaggcgaa
     3301 ttctgttttt cttttcatcg ataaatgcaa ttgcagcttc aatttcatca ccaattttta
     3361 aattctcaag agttgaagca ctaatatctt ctttatgaat aagcgcatct acatttttat
     3421 tgagttctac aaatactcca aaatctttga tatctctaat ttttccttta acgatatcgc
     3481 ctactttatg atttttagca tattcttgaa caggtgattc gctaagttct ttaatgctta
     3541 aagaaatttt ttgaccctct tcgtcgattt tgataatctt aactttgata atatcaccat
     3601 tgttaaattt atctttacat ttttcatttc tgtcccaaga tgcatcttca ttatgcaaaa
     3661 gaccctctac agaaccaatt tttacaaaag caccaaaaga agtcgttgaa gtaacttctc
     3721 cttctatcac atcaccaatt ttgtgatttt tcataaattc gtcaaaaggt ttagaaagta
     3781 aatttcttaa agatactctt aagcgtcttt catctgaatt gatttcaata acttcaacat
     3841 cgatttcttg acccttgcta atataatctt ttggattttt tatattttta tcccaagaaa
     3901 tttcgctaat atgcaaaaat ccttctatat cgttacccaa atcaacaaaa gcaccatatg
     3961 gctctatatt tgaaacaata accttaatgg tatcacccac ttctaagctg tctttaattt
     4021 ctccccaagg atcaggtaaa gccgctttga tagaaaggga taaatgtttg cgatctttgt
     4081 catattttac tactttgaca ggaactttat ctccttcttt gtataaaata ctaggattta
     4141 caggtccttt atatgaaatt tcactatagt gaacaagtcc atcaacacca cccacatcaa
     4201 caaacatacc ataagttgta atttttttta caacaccttc gataagccct tcttgctgag
     4261 cgatattatt aataagttct ttgcgttttt ttctttcatc atctaaagtt ttctttctag
     4321 atacaataat gctttgctct tctttatcaa ctttgatgat tttaacctta aaagttttac
     4381 ctataagatt gttattttct ttgaagccgt attgtgattt tggtaagaaa aattctacat
     4441 catcatcatt tacaacaaca agtccgcctt tattctttcc tactactttt acttcaaaaa
     4501 tatactcatc atcttcttta taattttgaa taaaatcgat aactttttct tttcttaaag
     4561 cttttttgtg agaaagtaaa gatctactac cacgagagcc tacaacagca actttaatgc
     4621 tatcacctac tttaaataac aaattagcat tttcatcttg aatttcattt aatgctaaaa
     4681 taccttctga ttttctgcct atatctacat agacttcatc atttttaatc tctacgatta
     4741 caccttcaat tatagtttct tctcttgact tgtcaaaagc ttctaaaagc tgcccaaagt
     4801 cttcatcttc aagatagtcc tctaaattgt tttgaacttt tttgttcacc tcgctcatca
     4861 tggtcctttt gaaaaaaaat taaaatttga ctgatt
//
LOCUS       DBBXRO010000121         4838 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.122, whole genome shotgun sequence.
ACCESSION   DBBXRO010000121 DBBXRO010000000
VERSION     DBBXRO010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4838
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.122"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            57..1328
                     /locus_tag="ACJFEZ_001556"
     CDS             57..1328
                     /locus_tag="ACJFEZ_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917659.1"
                     /translation="MQNAKPIRWFTFIVLVIGGGTVFKLSSLKDAFYVPMQEFMNLSN
                     TQIGLALSVYGIVQTVGNFVSIYIADRFSKKILIPFSLICVGLVGIYISTFPSFYGIL
                     IAWGLLSLFGEVVYWPVLLKAIRLLGDSTQQGRLFGFLEAGRGVVDTIVAFSALGIFL
                     LLGSGAGGLKAAILFYSACVIIAGILAYFLLEDDKISTKDDEGHEISKNKAAWNGVIK
                     AVKTPEIWVVSLTIFTIYSVYCGLTYFIPFLKDIYGMPVALVGAYGIINQYTLKLVGG
                     PIGGYLADKTFRSSTRYLRFALILAAVAILIFIFMPHEKLNIYFGMSLTLGFAAIVFT
                     MRATFFAPVDEIEMPREISGAAMSIACIFGYSPQLFCFALYGFIIDQFKGLLGYQIVF
                     ALMGFFAICGVIITTILLRMIAKKKTLQEVA"
     gene            1328..2329
                     /locus_tag="ACJFEZ_001557"
     CDS             1328..2329
                     /locus_tag="ACJFEZ_001557"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HGG0917660.1"
                     /translation="MKIGLETESMHLWFQNGRMDIFSYIDFAEELGCDGIIINIIKDF
                     GLDEEWGCLGSNDESHLKKIKEKLDTYGMYCEIDSKGFDKDKFEKIAKVSQLLGVKII
                     RSYVPLTDKNKKVKNASDGAYDDSKITAKFDKSEFLSTADEIKALIPLLEEYDLKLAI
                     ENHEYQTSDDLLELLNLIHHPRIGFLYDFGNSMMAYEEPIKACENMAKHTFSTHCKDH
                     IVFIEDDTKYVCGVPLGEGNLDIKTCVEILKQAGLDRINVEQCYPYCATFKREEGAGG
                     VKELGKGAFKIEKPLFNDLKAMQYYYPQEVSKEHLERLLILQKEGCERSVKYLKSII"
     gene            complement(2400..3178)
                     /locus_tag="ACJFEZ_001558"
                     /pseudo
     CDS             complement(2400..3178)
                     /locus_tag="ACJFEZ_001558"
                     /inference="COORDINATES: protein motif:HMM:NF016293.4"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 family protein"
     gene            complement(3175..4278)
                     /gene="rseP"
                     /locus_tag="ACJFEZ_001559"
     CDS             complement(3175..4278)
                     /gene="rseP"
                     /locus_tag="ACJFEZ_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004290180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HGG0917661.1"
                     /translation="MKSLLFLALILILGFKFYSIEFLATILVISFLIFFHELGHFLAA
                     KSLGVKVEIFSIGFGQSLFEREFKGTKYRLSALPLGGYVKLKGQDDMQPGLENQDQDS
                     YSILSPMKKIYILFAGPFFNLFLAFLLYIAIGNLGIQKLSPQIGNIAPNSAAALAGLE
                     NNDTILAINGIKIQSFDEISNHLSLKPLKILIDRKGENLEFLITPKLGQAYNDFGQVV
                     SKAQLGVSPSGSTTIIYHQGMQSINYALDESIKASTLIVKGIVKLISGEVEAKNLGGI
                     ITMTELTSKAAEKSLVVLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PPRAFEYLSYGGMALLLSLMVFATFNDIMRVMQ"
     gene            complement(4275..4811)
                     /gene="pgsA"
                     /locus_tag="ACJFEZ_001560"
     CDS             complement(4275..4811)
                     /gene="pgsA"
                     /locus_tag="ACJFEZ_001560"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HGG0917662.1"
                     /translation="MNIPNTLAVLRMILAPLLFFLLSYKFDNIHQSWINYFAALTFAL
                     AALSDFFDGFIARTLQQTTKLGGILDPLADKMLTLAAFLGLLLSGKANEWIVYLILVR
                     EFFITGFRVVMVSENLNVNASFTGKLKTTFQMIAIGFLTMEWIGGDILLYIALFLTLY
                     SGFEYIFSYVKQSKGKLQ"
BASE COUNT         1585 a          697 c          883 g         1673 t
ORIGIN      
        1 attatttatt ttgatggtac ctgagtttag ataattaaaa tacgggagga tatttcatgc
       61 aaaatgcaaa acctatacga tggtttactt ttattgtttt agtgattggc gggggaacgg
      121 tttttaaact ttcttcttta aaagatgctt tttatgtacc tatgcaggaa tttatgaatc
      181 ttagcaatac tcaaattggg cttgcgcttt cagtatatgg gatagttcag actgtaggaa
      241 atttcgtttc tatttatata gcagatagat tttccaaaaa aattcttatt cctttttcat
      301 tgatttgcgt tggcttggtg ggaatttata tttctacttt tccttcattt tatggaattt
      361 tgattgcttg gggtttgctt tctttgtttg gtgaagtggt gtattggcct gtgcttttaa
      421 aggctattcg tttacttgga gactctactc aacaaggaag actttttgga tttttagaag
      481 cagggcgtgg ggttgtagat actatagttg cttttagtgc tttagggatt ttcttacttt
      541 tgggttctgg agcaggtgga cttaaagccg ctatactttt ttatagtgct tgtgtaatta
      601 ttgcgggtat attagcatat tttctacttg aagatgataa gatcagcact aaagatgacg
      661 aggggcatga aatcagtaaa aataaagctg cttggaatgg agttataaaa gctgttaaaa
      721 cacctgaaat ttgggtagtt tctttgacaa tttttactat ttattcggtg tattgtggac
      781 ttacatattt tatacctttt ttaaaagata tttatggtat gccagtagct ttggtgggtg
      841 cttatggtat tatcaatcaa tatactttaa aattggttgg aggaccaatt ggaggctatt
      901 tggcagataa gactttccgt tcttctacaa gatacttgcg ctttgctctt attttggctg
      961 cagttgcaat tttaattttt atttttatgc cgcatgaaaa gttaaatatt tattttggaa
     1021 tgagtttaac tttagggttt gcagctattg tttttactat gcgtgctaca ttttttgctc
     1081 ctgtggatga gattgaaatg ccaagagaga tcagtggtgc tgcgatgagt atagcttgta
     1141 tatttggtta ttctccacaa cttttttgtt tcgcgcttta tggttttatt atagatcagt
     1201 ttaaaggttt attgggatat caaatcgttt ttgccttaat gggatttttt gcgatttgtg
     1261 gagtgattat aacaactatc ttgcttagaa tgatagctaa gaaaaaaaca ttacaagagg
     1321 tagcgtgatg aaaattggtt tagaaacaga aagtatgcac ctttggtttc aaaatggcag
     1381 aatggatata ttttcttata tcgattttgc tgaggagcta ggttgtgatg gcattattat
     1441 aaatattatc aaagattttg gcttagatga ggagtggggc tgtttaggaa gcaacgacga
     1501 gagtcatctt aaaaaaatta aagaaaaatt agacacgtat ggtatgtatt gtgagattga
     1561 ttctaagggt tttgataagg acaaatttga aaaaattgcg aaagtttctc agcttttagg
     1621 ggttaaaatc atccgttctt atgtgccctt gacagacaag aataaaaagg ttaaaaatgc
     1681 tagcgatgga gcttatgatg attctaaaat cacggccaaa tttgacaaga gtgaattttt
     1741 aagtacagca gatgagatca aggctttaat tccgctttta gaagagtatg atttaaaact
     1801 tgccatcgaa aatcacgaat atcaaacttc tgatgatttg cttgaattat taaatttgat
     1861 tcatcatcct agaataggat ttttatatga ttttgggaat tcaatgatgg cttatgaaga
     1921 gcctattaaa gcttgtgaga atatggctaa acatactttt agtacacatt gtaaagatca
     1981 tatcgtattt atagaagatg atactaagta tgtatgtggc gtgcctttag gtgagggaaa
     2041 tttggatatt aagacttgtg tagaaatttt aaaacaagct ggattagatc gtatcaatgt
     2101 agaacaatgc tatccttatt gtgccacttt taagagagaa gagggtgcag gtggggttaa
     2161 agagctgggc aaaggagctt ttaaaatcga aaagcccttg tttaatgact taaaagcaat
     2221 gcagtattat taccctcaag aagtctctaa agagcatcta gaaagacttt taattttaca
     2281 aaaagagggt tgtgaaagaa gtgtgaaata tctaaagagt attatataaa caagctttga
     2341 tctaaagctt gtttgatttc ttcaagtata gcaaagcgtt ttttatacat tgaacgcttg
     2401 ctgcttggaa tttcttcaag attttttcgc ttgtgagaaa gttcataata taaatgatta
     2461 ttgatcttga caagctttcc cccattttct aaccaaattt tttgataatc aacaaaatag
     2521 cctttatcct ctcctttttg agagcggatt tgattttttt catggactcc aagcgtggca
     2581 tcgagtttta aagatacaca aagcatttta atacactcta taagcagggc aataggacgc
     2641 aatccgtagc atttttttgt aaagatttta ttgatatcta aaacattaaa atcagagtat
     2701 tgataacctt gtatgcaaga aattaaaagc ttattatcta aggtaaaaca aaaacagcat
     2761 tgttcaatgg tgcgttttga tatcttaaag aaagtgccca aaaaccctct tcggatacat
     2821 gacgattgct tcctaagtag agttcaaaat cttcatcaaa tttgaaaata atttgatctt
     2881 ggggtagaaa tttaaaactt tcaagtccct tgtttacatc ataaatcaaa gttttaacac
     2941 gctcattagc gctaaagctt ttatcgcaaa atcttcttgt gacattgtag caagtatcgg
     3001 gtctatttga aaaaaagttc tttaggtgtt catttccttt catattgagc gttttttcaa
     3061 gaaatttaac ttgaggatag tataaaaatt ttctagaata aaatcgcata tgacgccaaa
     3121 aaatagtact tttggatttg tcattaaaat taggtatagg aaatttaaat aaattcattg
     3181 catcactctc atgatatcgt taaatgttgc aaaaaccatc aagcttaaaa gcaaagccat
     3241 tcctccatag ctaaggtatt caaaagctct tggtggaact ttgcgtctaa aaatcatttc
     3301 ataaagatta aaaagtatat gtcctccatc tagcataggg ataggcaaga gatttaaaat
     3361 tcctaaattg atggagatta aagcagtgat aaatagcaat acaaccaagc ttttctcagc
     3421 tgcctttgaa gtaagctcag tcatggtgat aataccacct aaatttttag cctcaacttc
     3481 accacttatg agtttaacga taccttttac tataagagta gaagctttaa tgctctcatc
     3541 taaagcataa tttatacttt gcatgccttg atgatagatt atagtggtgc ttccactagg
     3601 gcttactcca agctgggctt ttgaaacaac ttgtccaaaa tcattataag cttgtcctag
     3661 ttttggagtg ataagaaatt ctaaattttc tccttttctg tcgataagaa tttttaaggg
     3721 tttaagactt aggtgattag aaatttcatc aaaactttga atttttatgc catttatagc
     3781 aagtatagtg tcattatttt caagtcctgc taaagctgca gctgaattag gtgcgatatt
     3841 tcctatttgt ggacttagtt tttgtatgcc taaatttcct atggctatgt aaagcaaaaa
     3901 ggctaggaaa agattaaaaa aaggtcctgc aaaaagaata taaatttttt tcatagggct
     3961 taaaatacta tagctatctt gatcctgatt ttctaaacca ggttgcatat catcttgccc
     4021 cttaagctta acataaccgc ctaatggtaa agcactcaag cggtatttgg tacctttaaa
     4081 ttcacgctca aataagcttt gtccaaaacc tatgctaaaa atttctactt taacacctaa
     4141 ggattttgct gctaaaaaat gacctagttc gtgaaagaaa atcaaaaaag aaataactaa
     4201 gatggttgct aaaaattcta tagagtaaaa tttaaaccca agaattaaaa tcaaagctaa
     4261 aaaaagtaaa gatttcattg taattttcct ttgctttgct taacataact aaaaatatac
     4321 tcaaatcctg aataaagcgt gagaaataaa gcaatgtaaa gcaagatatc tccacctatc
     4381 cattccatag ttaaaaaccc tatggctatc atttgaaaag ttgtttttaa ttttccagta
     4441 aaagaagcat tgacatttaa attttcactt accataacca cgcgaaaacc cgtgataaaa
     4501 aattcgcgca ctaagataag ataaacaatc cattcattag cttttcctga tagaagaagg
     4561 cctaaaaaag ctgctagggt taacatttta tctgctagag gatctaaaat tccaccaagc
     4621 tttgtggttt gttgtaaggt tctagctata aagccgtcaa aaaaatcact caaggctgcc
     4681 aaagcaaaag ttaaagcagc aaaataatta atccagcttt gatgtatatt atcaaattta
     4741 taactcaata aaaaaaagag caagggtgct aaaatcatcc ttagcacagc taaagtattg
     4801 ggtatgttca taaaaaacct tattttagat taagataa
//
LOCUS       DBBXRO010000122         4794 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.123, whole genome shotgun sequence.
ACCESSION   DBBXRO010000122 DBBXRO010000000
VERSION     DBBXRO010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4794
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.123"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            114..1781
                     /locus_tag="ACJFEZ_001561"
     CDS             114..1781
                     /locus_tag="ACJFEZ_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HGG0917663.1"
                     /translation="MWQQIYDPFNSIWLSALFAFLPILCFLACLVFFKLKGYQAGFLT
                     VVLASVIALFVYDMPWNLVGASFVQGFTNGMWPIAWIIIAAIFLYKLSIKSGSFEIIK
                     KSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAAGLCLI
                     ANTAPVAFGAVGIPIIAMANLVGVEAHSVSAMVGRMLVPLSLTIPFFIVFLMDGLKGV
                     KETFPAILVAALSFTATQFWSSNHLGAELPDIISAIVSLAVTTIFLKFWKPKNIFRLD
                     GETHFSEDNTLNFGDVLKAWTPFILLIVCIIIWTQPWFKAIFDKDGFLSYTSISLQFS
                     NLTSGILSPSITGIGEAKPLSLGLGIDLINGKSVAQAGTAILLAAFLTIAILRIKAED
                     AAECFWATLKEMAIPCLTIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFAFFSPIIGW
                     IGVFLTGSDTSANLLFGTLQQVSAQKLGVSEALFLAANSVGGVVGKMISPQSIAIACA
                     AVGLVGKESDLFKFTLKYSIAFIILIGIWTCIIAFFLQGIIPEVVAK"
     gene            1934..2671
                     /locus_tag="ACJFEZ_001562"
     CDS             1934..2671
                     /locus_tag="ACJFEZ_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HGG0917664.1"
                     /translation="MKKVYFYATCLGTAAMQESVLNGIKLLRREGVEVIFKKNQTCCA
                     QPSFNSGYFNESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKDRPEFSRVK
                     DFSSRVIELSQYLDEVLNVNYEDKGEPIKVTWHSNCHALRVQKSIQASKNLIRKLKNV
                     ELVELQYEEECCGFGGTFSVKEPEISNAMVRNKIKDIQNTGVKYLISGDGGCLLNIDG
                     TMRRMGLDVKGIHLYEFLFKRLEGERL"
     gene            2668..4107
                     /locus_tag="ACJFEZ_001563"
     CDS             2668..4107
                     /locus_tag="ACJFEZ_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HGG0917665.1"
                     /translation="MSQKIPHEEIVHIKLNDIQMRENLMTAMHTLQKNRLGVIDARFR
                     DWQGLRAKAKQAKNNALMSLKDRLLEFEKNATKNGIQVHWASSDKDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGQIFKDKLGAKLENDEPESLNAIARDHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGVEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRTKMLAHKDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GENPPMGAKNIHHNAMEAFAFKQFKKAATKGERWRFALSKAHYFNWFVQNLSGALPVI
                     KKWYAFKELPQIKKDLYKEIQAIEGVIYE"
     gene            4100..4756
                     /locus_tag="ACJFEZ_001564"
     CDS             4100..4756
                     /locus_tag="ACJFEZ_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HGG0917666.1"
                     /translation="MSKINEISNKSKEKILSALNEAYEAKDFTYQASIDPVEHIQTKE
                     DALAEMKQKMSDNKYIVENATKETLEEKINEIITKYNYKKMIYGTDLGLDLNKIQAEE
                     KICFDKEIENLRYEVFHSDFSIVHARAGVSSHGVALIPSSKGQPRMLSLAPKLCIVLL
                     KKEDIVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIVIY
                     "
BASE COUNT         1625 a          701 c          908 g         1560 t
ORIGIN      
        1 acataagaag tcttatgatt tttcttaaat tttaatttca ttatatatat tttaagaatt
       61 tgttagaatg aagagaaact ttaaataaaa taaaacaaag gagaagacac attatgtggc
      121 aacaaattta tgatccgttt aatagcattt ggctcagtgc cttatttgct tttttaccta
      181 ttctttgctt tttagcttgt ttggtatttt tcaagttaaa aggttatcaa gcgggttttt
      241 taaccgtggt tttggcaagc gttatagctt tatttgttta tgatatgcct tggaatttag
      301 taggtgctag ttttgtacaa ggctttacaa atggtatgtg gcctatagct tggattatta
      361 tcgcggctat ttttctttac aaactctcta tcaaatcagg ttcttttgaa atcattaaaa
      421 aaagtgtgat gagcatcact cctgatcaca gaattcaagt gattttgata ggtttttgtt
      481 ttggttcttt cttagaaggt gctataggtt ttggtggtcc agtagctatc acagcagctc
      541 ttttggtggg acttggtttg cgtcctttac aagcagcagg actttgtctt atagccaata
      601 ccgcacctgt tgcttttggt gctgtgggga ttcctattat cgctatggca aatttagtag
      661 gagttgaagc tcattctgtt tctgctatgg tgggtagaat gcttgttcca cttagtctta
      721 ctataccttt ttttatagta tttttaatgg atggtttaaa aggggtaaaa gaaactttcc
      781 ctgctatttt agttgccgca ttaagcttta cagcaacgca attttggagc tcaaatcact
      841 taggcgctga acttcctgat attatttcag ctattgtgtc tttagcagtt acaactatct
      901 ttttaaaatt ttggaaacca aaaaatattt ttagactaga cggagaaact cattttagcg
      961 aagataatac cctaaatttt ggtgatgtgt taaaagcttg gacacctttt attttactta
     1021 tagtttgtat tatcatttgg actcagcctt ggtttaaagc tatctttgat aaagatggtt
     1081 ttttaagcta tacaagcatt agcttgcaat ttagcaatct tacaagcggt attttaagtc
     1141 cttctatcac aggtataggc gaagctaaac ctctttcttt aggacttgga atcgatctta
     1201 tcaatggtaa aagtgtagct caagcaggaa ctgcgatttt acttgcagct tttttaacca
     1261 tagctatttt aagaataaaa gctgaagatg ctgctgaatg tttttgggca accctaaaag
     1321 aaatggctat cccttgtctt actataggtt tggttgtagc ctttgctttt atctctaaaa
     1381 atagtggtat gagtactact ttaggacttg cttttgctca tacaggagat gcttttgcat
     1441 tcttttcgcc tattataggt tggattggag ttttcctaac aggatcagat acaagtgcta
     1501 acttactttt tggaaccttg cagcaagtaa gtgcgcaaaa actaggcgtt agtgaagctt
     1561 tattcttagc agcaaactct gtaggtggag tagtaggaaa aatgatcagc cctcaaagta
     1621 tagctattgc ttgcgcagcc gttggacttg taggcaaaga atctgatctt ttcaaattca
     1681 cactcaaata ttctatagct tttatcattt taataggaat ttggacttgc attatcgcat
     1741 tctttttaca aggaatcatt ccagaggtag tagccaaata aaaacaaact tgcaagattt
     1801 attcttgcaa gtttaagcaa gttttaaatg aaaaaatttt gaaaatattt ttatcattga
     1861 tttaattttg attttatttt tctaaagtta gaataattgt ttatattaaa tctcttaaaa
     1921 tgaaggagaa gaaatgaaaa aggtgtattt ttacgccaca tgcttaggaa ctgctgccat
     1981 gcaagaaagc gttcttaatg gtattaaact tttacgccga gaaggagtgg aagttatttt
     2041 taaaaaaaac caaacctgtt gtgctcaacc ctcttttaat tcaggatatt ttaatgaaag
     2101 tcgcgaaata gccttataca atgtagattt atttgacaaa gattatccta tcgttgtacc
     2161 tagtggatct tgtgcgggta tgatgagtca tgattataaa gagcttttta aggatagacc
     2221 tgaattttct agagtaaaag attttagctc gcgtgttata gaactttcac aatatcttga
     2281 tgaagtttta aatgtaaatt atgaagataa aggagaacct attaaagtga cttggcattc
     2341 taattgccat gctttaagag ttcaaaaaag tatacaagca agtaaaaatc tcattagaaa
     2401 acttaaaaat gttgaacttg tagaattaca atatgaagaa gaatgttgcg gttttggggg
     2461 aactttttct gtaaaagaac ctgaaatttc aaatgctatg gtaagaaata agattaaaga
     2521 tatacaaaat accggagtaa aatacctcat cagtggagat ggtggctgtc ttttaaatat
     2581 agatggaact atgcgcagaa tgggtttaga tgttaaaggc atacacttgt atgaattttt
     2641 atttaagcgt ttggaaggag agagattatg agtcaaaaaa ttccacacga agaaattgtt
     2701 catattaaat taaacgacat tcaaatgcgt gaaaatttga tgactgctat gcatactttg
     2761 caaaaaaata gacttggggt cattgatgca agatttaggg attggcaagg attaagagcc
     2821 aaagcaaaac aagctaaaaa caatgcctta atgagcctaa aagataggct tttagaattt
     2881 gaaaaaaacg ctacaaaaaa tggcatacaa gtgcattggg caagtagcga taaggatgct
     2941 tgtgaaatag tctatgaaat catgaaagaa aaaaatatca ccaagctttt aaaaggcaag
     3001 tcaatggcaa gtgaagaaat aggcctaaat cactacctag aaaaaaaagg tttaaaagcc
     3061 atagaaaccg atcttggaga gcttatttta caactcaatg aagaaccgcc tttgcatata
     3121 gttgtccctg ctattcatag aaatcgccac gaaataggtc aaatttttaa agataaactt
     3181 ggtgcaaaat tagaaaatga cgaacctgaa agcttaaatg ccatagcaag agatcattta
     3241 agaaaagact ttgaaggctt aaaattagga cttagtggtg taaattttgc catgtcaaga
     3301 gagggggctt tttggcttat agaaaatgag ggaaatggta gaatgtgtac cacagcaccc
     3361 gatattcaca tcgcactttg tggtgtagaa aaagttatgg aaagctttga agatgcagca
     3421 actatggttt ctttacttac tccttcagcc acaggacaat ttatacctac ttataacaac
     3481 attatcacag gcccgcgaaa aaatggggat ttagatggcc caaaagaagt gcatgtgatt
     3541 ttatttgatc acaatagaac caaaatgcta gctcataaag attattatga ggctttgcgt
     3601 tgtattcgat gtggggcttg tatgaatttt tgccctgttt atgatcaaat cggcggacac
     3661 gcataccaaa ccacctatcc aggacctatt ggtgaagtaa tcagtccaaa tatttttggt
     3721 atagatcaca caggtgatat tttaaatttc tgttcgcttt gtggacgctg ttcagaagtt
     3781 tgtccggtgc aaattccttt agctgatctg attagaaaac taagatgcga taagatagga
     3841 caaggagaaa atccacctat gggtgcaaaa aatatccatc ataatgcaat ggaagccttt
     3901 gcatttaagc aattcaaaaa agcagcaaca aaaggtgaaa gatggcgttt tgcactttca
     3961 aaagcgcatt attttaattg gtttgtgcaa aacttatcag gagctttacc agtgattaaa
     4021 aaatggtatg cttttaaaga attacctcaa atcaaaaaag atctatataa agaaattcag
     4081 gctatagaag gagtaattta tgagtaaaat caatgaaatt tctaacaaaa gcaaagaaaa
     4141 aattttatca gcactcaatg aagcttatga agcaaaagat tttacttatc aagccagtat
     4201 agatcctgta gagcatattc aaacaaaaga agatgcctta gctgaaatga agcaaaaaat
     4261 gagtgataat aaatacattg ttgaaaacgc tactaaagaa actttggaag aaaaaatcaa
     4321 tgaaattatc acaaaatata attacaaaaa aatgatatat ggcactgatt taggcttaga
     4381 tttaaacaaa attcaagccg aagaaaaaat ttgctttgat aaggaaattg aaaatttacg
     4441 atatgaagtt tttcatagcg atttttctat agttcatgca agagctggag taagctctca
     4501 tggcgttgct ttgatacctt caagcaaggg acaacctaga atgctaagtc ttgcacctaa
     4561 gctttgtata gtgttattaa aaaaagaaga catagtaaaa agccttagcg aagctttaaa
     4621 tttggtaaaa aaagaaaatg aaattttacc tacaaatatt ttatttatcg caggtccttc
     4681 aagaacagca gatatagaat taatcactgt ttttggcgtt catgggcctc aaattgctca
     4741 tattgttatt tattaaaaag ttttagctct agtgttattt actagagcta aaac
//
LOCUS       DBBXRO010000123         4789 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.124, whole genome shotgun sequence.
ACCESSION   DBBXRO010000123 DBBXRO010000000
VERSION     DBBXRO010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.124"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            3..680
                     /locus_tag="ACJFEZ_001565"
     CDS             3..680
                     /locus_tag="ACJFEZ_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HGG0917667.1"
                     /translation="MIGGMSFESTITYYKTINETINNQLGNLNSAKILLYSVNFEEIA
                     NLQKNGEWEKAAQILGECAKKLELGGADFILIATNTMHKIFDQIQKNIKIPLIHIAQS
                     TAKILKQQNIHTIGLLGTQYTMMEDFYKNALKKENINTITPNQSDMQELSDIIFNELC
                     KGQMKENSKEKYLKIIQKLKDEGAQGIVLGCTEIGLLISQEDTNIPIFDTALIHALDA
                     VNLALKD"
     gene            complement(677..877)
                     /locus_tag="ACJFEZ_001566"
     CDS             complement(677..877)
                     /locus_tag="ACJFEZ_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HGG0917668.1"
                     /translation="MGKLERIIRIILALVIFSVGVYYASWWALIGFIPLLTGIFGVCP
                     IRVWTGKQACPLGVCPISKKKD"
     gene            1008..1631
                     /locus_tag="ACJFEZ_001567"
     CDS             1008..1631
                     /locus_tag="ACJFEZ_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HGG0917669.1"
                     /translation="MDKEKILKEYFKNYNLENKDFEAMVEKSYFKEFDKNTILDDCLG
                     FVIVLKGGFRAFILGQNAKEITVFKLKQNEECVICSHCIFETISYNLTLESFEDTQIL
                     IVPVKIYSQLKDKYPLIANYTLNLIAKRFNSLINILEQALFTPLHHRVKMFLKENAKE
                     GKITFTHEEIALHLGSTREVISRILKTMQKEGFIQQNRKEITLLKDL"
     gene            complement(1831..2955)
                     /gene="cydB"
                     /locus_tag="ACJFEZ_001568"
     CDS             complement(1831..2955)
                     /gene="cydB"
                     /locus_tag="ACJFEZ_001568"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HGG0917670.1"
                     /translation="MFFGLELEGLQIYWWVILSLLGGLLVFMFFVQGGQTLIDELSSD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEVFLKINGYLGVFLIGVAISSFFSGSHFVLNEHNFVSWQ
                     NSLRGLELLFNPFNYLLGIALVFLSRILGAAYFMNNIKDENIKAKAVRKLSINSILFL
                     PFFLGFLAWIFIKEGFGVDEKGIVSMTENVYLYNFLDNILFAILFIVGVVFVLLGMVQ
                     GSKGCSKTIFTLGFGSVLAVFALFLSIGLGSSAFYPSLSDLQSSLTIRNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDRVKITREEMKDSEHLY"
     gene            complement(2955..4517)
                     /locus_tag="ACJFEZ_001569"
     CDS             complement(2955..4517)
                     /locus_tag="ACJFEZ_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HGG0917671.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFIIAIMETIYVK
                     TGNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKKFHLISTWCVAIGSNLSAFWILVANGWMQYPVGMQ
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFILKGRHIIEA
                     KKSLVVGASFGLVCSVFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIHGNEDRDIEPMQERID
                     KGKIAIQALKDYKLAKDNNDTAAMATHKSILEANFKDFGYGYLEKPTDAIPPVALTFY
                     SFHIMVALGSLFFLLFIATLYLTMANDIEKFRKILWLCLLCIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLMPVHIAATELGKVNVQISFWIFAVLFTALLIAEIKIMLTQIKKGFDAY
                     AGHSTLMGKGEK"
     gene            complement(4517..4747)
                     /locus_tag="ACJFEZ_001570"
     CDS             complement(4517..4747)
                     /locus_tag="ACJFEZ_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HGG0917672.1"
                     /translation="MYLKCFYFFFVRIFNFYKEGFKNLTLGKTLWKIIFIKLFIMLIV
                     LKLFVFDVNFNSIFKNDNEKSNFVIENLIKEK"
BASE COUNT         1896 a          883 c          622 g         1388 t
ORIGIN      
        1 gcattatagg tggaatgagt tttgaaagta ccataaccta ctataaaact ataaacgaaa
       61 ccattaataa tcaactaggc aatttaaatt ctgcaaaaat tttactctat agtgtcaatt
      121 ttgaagaaat agcaaatttg caaaaaaatg gcgagtggga aaaagctgcg caaattttag
      181 gagaatgtgc taaaaaatta gaacttggtg gagctgattt tatacttatt gccaccaaca
      241 ccatgcataa aatttttgat caaattcaaa aaaatataaa aattcctctc attcatattg
      301 ctcaaagcac agccaaaatt ctaaagcaac aaaacataca caccataggc ttactaggca
      361 cccaatatac tatgatggaa gatttttata aaaatgcatt aaaaaaagaa aatataaata
      421 caatcacccc aaatcaaagc gatatgcaag aactaagcga catcatcttt aatgaacttt
      481 gcaaaggaca aatgaaagaa aattctaaag aaaaatactt aaaaatcatc caaaaactaa
      541 aggacgaagg tgctcaaggt atagttttag gctgcacaga aattggattg ttgatttccc
      601 aagaagatac aaatatccca attttcgata cagccttaat tcacgccctt gatgctgtaa
      661 atttagcttt aaaagattaa tctttctttt tagagatagg acaaactccc aaaggacaag
      721 cttgctttcc tgtccaaacc cttatagggc acacaccaaa aatacctgta agcaaaggaa
      781 taaatcctat caaagcccac caagacgcat aataaacccc tacactaaag ataaccaatg
      841 ctaggattat tcttattatt ctttctagtt tacccatttc ttctcctttt gtataattta
      901 atcaaagtat aaacaaaaaa aattttcttg tcagtgataa aagtcactaa aaaataatta
      961 atctaaaaaa gatacaataa aaattaaatt cacaaaggta gtctatcttg gataaggaaa
     1021 aaattttaaa agaatatttt aaaaactata atcttgaaaa caaagacttt gaagctatgg
     1081 tggaaaaatc atactttaaa gaatttgaca aaaatacaat tttagatgat tgtttaggat
     1141 ttgtgatagt tttaaaagga ggatttcgtg catttatttt aggtcaaaac gccaaagaaa
     1201 tcaccgtttt taaactgaaa caaaatgaag aatgtgtcat ttgttctcat tgtatctttg
     1261 aaactatatc ttacaatctc accctagaaa gctttgaaga tactcaaatt ttaattgttc
     1321 ctgtaaaaat atattctcaa ctaaaagata aatatccttt aatagcaaac tatactctta
     1381 atcttattgc caaacgcttt aattctttga ttaatatttt agagcaagct cttttcaccc
     1441 ctcttcatca tagggttaaa atgtttctta aagaaaacgc aaaagaagga aaaatcactt
     1501 ttacacatga agaaatagcc ttacatttag gcagtactag agaagttatt tcacgaattt
     1561 taaaaacaat gcaaaaggaa ggttttattc agcaaaatcg taaagagatt acacttttga
     1621 aagatttatg ataaaaatgc ccatataaat atgggcaaaa ttgcaatatt ttgaaaagat
     1681 ttaatcctaa atcggttaaa tctttaagaa ctttatagct tattgtcttt ttctaattga
     1741 ttgatattaa gcatgataaa tttatagctt acataaatca ccaaaggcca aaccaataaa
     1801 aacaaagcgt gtagcatttt ttctccttga ttaatataaa tgttcgctgt ctttcatttc
     1861 ttcacgagtg atttttactc tatccattgc attccaaaca taaataatat aagctaaaac
     1921 aaaaggcaca agcaaagata cataagccat gacgcttaga gtataataac tcgaacttgc
     1981 attgcgtata gttaaagaac tttgcaaatc actaagtgaa ggataaaaag cgcttgatcc
     2041 aagtcctatg cttaaaaata aagcaaaaac agccaaaacc gatccaaaac ctaaagtaaa
     2101 aatcgtttta gaacatcctt ttgaaccttg taccataccc aaaagcacaa atacaactcc
     2161 aacgataaat aaaatagcaa aaagaatatt atctaaaaaa ttgtataaat atacattttc
     2221 agtcatactc acaatgccct tttcgtccac tccaaaaccc tctttgataa aaatccacgc
     2281 aagaaatcct aagaaaaaag gcaaaaataa aatactgttt atactcagtt ttctaacggc
     2341 ttttgctttg atattttcat ctttgatatt attcataaaa taagcagcac ccaaaattct
     2401 agataaaaac accaaagcaa tacccaaaag ataattaaaa ggattaaaca aaagttccaa
     2461 accgcgtaaa gaattttgcc aagaaacaaa attatgctca tttaatacaa aatgcgatcc
     2521 actaaaaaaa ctgcttattg caaccccgat taaaaacact cctaaataac cattgatttt
     2581 aagaaaaact tcataggttt tagaaccata gacattgttt tcttttttac gatactcata
     2641 agcaacggct tgtaaaataa agcaaaataa aatacaaagc caagcccaat aagccccacc
     2701 aaaacttgtg ctataaaaaa gcggaaaagc agcaaaagca gcaccgccaa aaagcacaag
     2761 agtagtaaaa ccaagctccc atttacgacc tagtgagttt acaagcattg ttttttcaag
     2821 ttcgtcagaa cttaattcat caattaaagt ttgaccccct tgaacaaaaa acataaaaac
     2881 caaaagtccg cctaataaac ttaaaatcac ccaccaataa atttgtaacc cctcaagttc
     2941 taaaccgaaa aacattattt ttctccttta cccataagag tactatgtcc agcatacgca
     3001 tcaaaacctt ttttgatttg agtaagcatg atcttaatct ctgcaatcaa aagtgcagta
     3061 aataaaaccg caaaaatcca gaatgaaatt tgaacattga ctttgccaag ttcggttgct
     3121 gctatatgaa caggcattaa atcttgtata gcccaaggtt gcctacctac ttcagccact
     3181 atccatcctg cctctgctgc gatatatcct aaaggaatac acaataaaca aagccaaaga
     3241 atttttctaa atttctcaat atcatttgcc atagtaagat aaagcgttgc gataaaaagt
     3301 aagaaaaata agcttccaag agctaccatg atatgaaaac tataaaaagt taaagccaca
     3361 ggtgggatag catctgttgg tttttctaaa taaccataac caaaatcttt aaaatttgcc
     3421 tctaaaatac ttttgtgagt tgccatggct gctgtatcgt tattatcttt agctaattta
     3481 taatctttta aagcctgtat agcgattttt cctttatcga tgcgttcttg cataggctct
     3541 atgtctctat cttcgtttcc gtgtattaaa tcctcaatgc ctggcacaaa agaattagga
     3601 tcacgatttc ctaatataga taaagcataa ggtatagtaa tatcaaataa aaacacactt
     3661 tcgttattat ctatagtttt tttaggattt aaaattccaa aaggaacaag tcctgcacgg
     3721 tgctcacctt gataaacccc ttccatagcc gcaagtttca taggttgcgt ttgggtaaca
     3781 cgataagcac tctcatctcc gctaaaaaat aagaaaaccg aacaaacaag cccaaaacta
     3841 gcacccacaa ctaaactttt cttagcttcg ataatatgac gcccttttaa tataaaccaa
     3901 gccgaaattc ccatcacaaa taaagcagaa atcacataac cactgcctat ggtatgtaaa
     3961 aatttagaga tcgctacagg agaaagtgca acttcaaaaa agctttgcat ttcatttctt
     4021 gctgtatcgg gattaaattg cattcccaca gggtattgca tccagccatt tgcaaccaaa
     4081 atccaaaatg ctgataaatt actgcctata gccacacacc aagttgaaat aagatggaat
     4141 ttcttagaaa ctttatccca gccaaaaaac ataacagcaa aaaaagtagc ctctaagaaa
     4201 aaagccatta taccttcaac tgccaaagga gcaccaaaaa tatcacccac aaaccagcta
     4261 taatttgccc agttggttcc aaattcaaac tccataataa tgcccgtagc tacgccgata
     4321 gcaaaattga tagcaaataa agaaagccag aatttagtga tttttttcca tctttcattg
     4381 cctgttttta cataaatggt ttccataata gcaatgataa aagataagcc caaagtcaaa
     4441 ggcacaaata aaaaatgata aagcgcggtt aatgcaaact gcgctcttga ccaatccaca
     4501 ctgctaagtt cgttcattat ttctccttaa taagattttc tatgacaaaa ttactttttt
     4561 cattatcatt tttaaaaata gaattgaaat ttacgtcaaa aacaaaaagt ttaagcacaa
     4621 taagcattat aaaaagtttt ataaaaataa ttttccataa agtttttcca agggtaaggt
     4681 ttttaaaccc ttctttataa aagttaaaaa ttcgcacaaa aaagaaataa aaacatttta
     4741 gatacattaa attaaacctt ataaaaataa tgaaaaattt aaattggaa
//
LOCUS       DBBXRO010000124         4766 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.125, whole genome shotgun sequence.
ACCESSION   DBBXRO010000124 DBBXRO010000000
VERSION     DBBXRO010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4766
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.125"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1393)
                     /locus_tag="ACJFEZ_001571"
     CDS             complement(<1..1393)
                     /locus_tag="ACJFEZ_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HGG0917673.1"
                     /translation="MFRLSSVSSKLLLSVAISVILATALMIAIVSFQVASYSEKEARN
                     TILLSSKRYVNYIQGMLNEEVTLTKGVATSLNEMFQNNDHIDIDLIESLIKNTFDSSH
                     YAAYTFLYLKDTTVLSDMQNVDKKYISPDGKTFSMIFFDQIVEKSGGITTISTPNNFS
                     QLNLIQNIEQNAKYGDKDSVFVDSPRKLNYDNNEFLGINFGMPIFNNKGKFIGVIGYT
                     IDLLEISETILDPKFDFFEGDLRFLMNDQGIIAIHKNKNAILKTLFDINKDQSAQLIV
                     EAVKNHKDEILDNYIASTGDLSYASISSFSTLGNSSHWSVIVTAPKKSVLAPLYKLQY
                     IIISVAIIALIAILAVVYFFIRKIIGSRIPLILKSLENFFRFLNHEKIEVQTIEIKAN
                     DELGKMGKIINENILATKRGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIE
                     LKNVLNRLLDALQA"
     gene            complement(1506..2015)
                     /locus_tag="ACJFEZ_001572"
     CDS             complement(1506..2015)
                     /locus_tag="ACJFEZ_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HGG0917674.1"
                     /translation="MQFTIFHILAFVILLLCFILVCILIFLKVKQKEFALISYTIATI
                     FTALLIYSVFLTINQFTTQASLSKLTFSRDLRHESIIITGRVQNLTKFNIRKCYLMLS
                     ILNKKRVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(2015..2545)
                     /locus_tag="ACJFEZ_001573"
     CDS             complement(2015..2545)
                     /locus_tag="ACJFEZ_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HGG0917675.1"
                     /translation="MERLKEIVHFYTTHLYLVDYMLILFVFFLFTCVLLLCIFLRHKP
                     VAALLIIALNIIICFLIYTYGYKFIDSEVRSRKTTIVEQKFIQSSEALIIDFNITNTS
                     KNDFKQCKVIARIFKDKLPEDNLINEYKNQLIPFRQKSREIFNLKKNTTQFQRISFDN
                     FNYDNNYTIRLNSECF"
     gene            complement(2556..3638)
                     /locus_tag="ACJFEZ_001574"
     CDS             complement(2556..3638)
                     /locus_tag="ACJFEZ_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HGG0917676.1"
                     /translation="MPADLNDYFNKKNGNSNNNNNRQNFNFKAPEFNFKGFGKFSPFV
                     YGVIIIVLFLIIAKPFMVINSGEMGIKSTTGRYDPNPLEPGLHFFIPFIQKITTIDTR
                     VRQINYASIEGSNENLTSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQTIA
                     TWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNAIATQIEEGIRKTIEAQPNEPV
                     ELRAVQLREIILPLKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEANAT
                     IISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAKIF
                     LTPGGAVPNIWVDTKDAKKQSSTNMN"
     gene            complement(3654..4568)
                     /gene="ilvE"
                     /locus_tag="ACJFEZ_001575"
     CDS             complement(3654..4568)
                     /gene="ilvE"
                     /locus_tag="ACJFEZ_001575"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HGG0917677.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELEKAQIELLKVNDFKNNVYIRPVIFL
                     GDGVMGLYHVKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFVRNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGLTVLRQRISRDEVYTADEAFFTGTAAEITPINNVDARIIGSGIRG
                     SITKKLQDAYFDVVYGRNEKYASMLTYI"
BASE COUNT         1608 a          741 c          685 g         1732 t
ORIGIN      
        1 tagcctgtaa agcatcaaga agtctattta gaacattttt aagttcaatc agttgtgggt
       61 ttcttggatt agcagtaatt cttgctgtta aattaccacc ttctacaact gatacggttt
      121 gaactgattc tttaacggct tgattgtctt gttctaagcc tcttttagta gcaagaatgt
      181 tttcattgat aattttaccc attttgccca attcatcatt agctttaatt tcaattgtct
      241 gaacttctat tttttcatga tttaaaaagc gaaagaaatt ttccaaagac ttaagtataa
      301 gaggaattct agagcctatg atttttctta taaaaaagta cacaacagcc aaaatagcaa
      361 ttagtgctat tatggcaaca ctaataataa tatattgtag tttatataaa ggggctaaaa
      421 ctgatttttt aggagctgtt acaattacac tccaatgact agaattacct aaagtgctaa
      481 atgaagagat actagcataa ctaagatctc ctgttgaggc aatataatta tctaagattt
      541 catctttatg gtttttaact gcctcaacaa ttaattgagc agattgatct ttgttaatat
      601 caaataaagt ttttaaaatt gcatttttat ttttatgaat agcaataata ccctgatcgt
      661 tcattaagaa tcttagatcc ccttcaaaaa agtcgaattt tggatccaat atagtctcgg
      721 aaatttctag taaatctata gtatatccta taactccaat aaatttgccc ttattgttaa
      781 aaataggcat accgaaattt atacctaaaa attcattatt atcataatta agttttctag
      841 gagaatctac aaaaacagag tctttatctc catattttgc attttgttcg atattttgta
      901 ttagatttaa ttgagagaaa ttgtttggag ttgaaatagt agttattcca ccagattttt
      961 ctactatttg atcaaaaaat atcatagaaa aagtttttcc atctgggcta atatattttt
     1021 tatctacatt ctgcatatca cttaatacag tagtatcttt taaatagaga aatgtatatg
     1081 ctgcatagtg actactatca aaagtatttt ttataagact ttcaattaaa tcgatatcta
     1141 tatgatcatt attttgaaac atttcattta acgatgtagc aactcctttg gttagtgtga
     1201 cttcttcatt taacatacct tgtatataat tcacatatct ttttgaagat aataaaatag
     1261 tatttctggc ttctttttct gaatatgaag caacttgaaa agaaacaata gcaatcataa
     1321 gagctgtagc taaaataaca ctaatagcaa ctgataataa gagttttgaa ctaacgctcg
     1381 atagtctaaa catgaaaaac ctcacataaa ttttttacta aaaataaagc tcgttagcat
     1441 atcaaaaaaa aataaaatta atataaaatt attttttata gatgttttaa aactatttaa
     1501 caatatcaaa tacattttaa ggtgtgataa aattcaggat tattaaaagt tggaggaaaa
     1561 ggaacgctag ctctaaattc tttataggta ttacccggga gtgtgtctat gatttctata
     1621 gtataagaaa cacttgtatt ttgcatttta gcgttacgga tatttttatc attgaaaatt
     1681 tcacctccaa ctcgcttttt atttagtata cttagcatta aatagcattt acgaatatta
     1741 aatttggtaa gattttgcac tcttcctgta ataataatac tttcatgtct taaatctcta
     1801 gaaaaggtaa gtttgctaag actagcttgg gttgtgaatt gattgatagt gagaaataca
     1861 gaataaatta aaagtgcggt gaaaatggtc gcgatagtat aggaaataag agcaaattct
     1921 ttttgcttca cttttaaaaa aattaaaata caaactaaaa taaagcaaag aagcaagata
     1981 acaaaagcca aaatatgaaa aattgtaaat tgcattaaaa acactccgaa ttgaggcgta
     2041 tggtgtaatt attgtcatag ttgaaattat caaaagaaat tctttgaaat tgagttgtat
     2101 tttttttcag attaaaaatt tccctgcttt tttgcctaaa gggaatgagt tgatttttat
     2161 attcattgat gagattatct tcgggtaatt tatccttgaa aattctagca atcactttac
     2221 attgtttaaa gtcgttttta gaagtatttg tgatattaaa atcaataatt aaagcttcag
     2281 agctttggat gaatttttgt tctacaatgg ttgtttttct actccttact tcgctatcta
     2341 tgaatttata tccatatgta taaatcaaaa aacaaataat tatattaagt gcgatgatca
     2401 aaagagccgc cacaggtttg tggcgtaaaa agatacacaa gagtagaacg caagtaaaga
     2461 ggaaaaagac aaataaaatc agcatataat ccactaaata taagtgagta gtgtaaaaat
     2521 gcacaatttc ttttagtctt tccactttat atatcctagt tcatgttagt agaactttgt
     2581 tttttagcat ccttagtatc cacccaaata tttggtactg ctccaccagg agttaagaaa
     2641 attttagcat cttgattgac tttcaaggct tcattaaatt ctttttgggt ttcaatttgt
     2701 tttaagttaa gcaaaggagt atttaaacta ttcgcaattt ctttattaga ataagcttgc
     2761 gcatctgctt ctatttttac agccattgct ttacctttag cactgatgat ggttgcattt
     2821 gcttcccctt cagccaaagc agcttttttt aaagcttctt gatttgctct ttctacctca
     2881 tatttagttc tttctgcttc ttgttttgca atttgcacgc gttcaatttg ctcttttact
     2941 ttcaaaggca atataatttc tctaagttga accgcacgaa gttccactgg ctcattaggt
     3001 tgtgcttcta tggtttttct tatcccttct tcgatttggg ttgcgattgc attacgattt
     3061 gttggcaact cttcagcagt atattttcct acaacacttc gaaccacatc acgcaccaca
     3121 ggatctatga ttttattttc ccaatttaaa ctccaagttg ctatagtttg aggaacttgt
     3181 aaaggattta agcggtattg aactgttaca tcaatagaaa caggcaagcc gcgtgaatca
     3241 agcacggaaa tgctgttttt attaatcaca cctgaacctg aagttaaatt ctcattactt
     3301 ccttctatag aagcataatt gatttgtctt actctcgtat caattgtagt tattttttgt
     3361 ataaaaggta taaaaaaatg gagtcctggc tctaaaggat ttgggtcgta tctacctgta
     3421 gtggatttaa tccccatttc tccagaattt atcaccataa aaggttttgc gataattaaa
     3481 aacaaaacaa taataattac accataaaca aaaggagaaa attttccaaa acccttgaaa
     3541 ttaaattcag gagctttgaa attgaaattt tgtcggttgt tattgttatt agaatttcca
     3601 ttttttttat tgaaataatc attcaaatca gctggcattt atttccttta tctttaaata
     3661 taagttagca tagatgcgta tttttcattg cgtccataaa ctacatcaaa ataagcatct
     3721 tgaagttttt tagtaataga acctcttata ccactgccta taattcttgc atcaacatta
     3781 ttaataggag tgatttctgc agcagttcca gtaaaaaatg cttcatcagc agtataaacc
     3841 tcatcccttg aaattctttg acgaagtaca gttaaaccaa gatcgtgagc gattttaaga
     3901 actgtgtctt gagtgatact ttttaaagaa aaatcattag gtggagtgat taaaactcca
     3961 tcttttacga taaagaagca ctctcccgta ccttctgcta taaaaccctc ttcatcaagc
     4021 atcaaagctt cttcatatcc tgcttcaata gcttcaaatt ttgcaatttg agagttaaga
     4081 tagtttgcgc tcgcttttgc tttacccata caagatttta cactatttct tacaaaagat
     4141 gaaattttta ctttaatacc tttttctaaa ccttcttcac ccaaataagc accccattcc
     4201 caagcagcga tgccaacgcg tacaggggct tttacatgat aaagtcccat tactccatct
     4261 cctaagaaga ttacagggcg aatatagaca ttgtttttaa aatcatttac ttttaaaagt
     4321 tcaatttgtg ccttttcaag ctctttttga gaaaaagggc agtttaaaag agtaatttta
     4381 gcagattcta aaagtctttt agtgtgatct tcaagtctga aaatcgctaa gcctttatct
     4441 gttttataag ctcttgttcc ttcaaaaaca gcattaccat aatgtaaaga atgggttaaa
     4501 aagtgcaagg ttgcatcttt aaaatcaact aattttccat ccatccaaat tttatctgct
     4561 gagatcattt ttagccttaa tagtcatatt tttgttaaaa aacttttaat tttagcaaaa
     4621 gtaaattaat gatagcttga tatataaagt ataaatttaa acatttatga aggattttaa
     4681 taaaaaataa aatcaaactt ttagaattta tcgagtcgat tttattaagg atatggcctt
     4741 tttctgatga ttaaaataag aatgag
//
LOCUS       DBBXRO010000125         4743 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.126, whole genome shotgun sequence.
ACCESSION   DBBXRO010000125 DBBXRO010000000
VERSION     DBBXRO010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4743
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.126"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            335..571
                     /locus_tag="ACJFEZ_001576"
     CDS             335..571
                     /locus_tag="ACJFEZ_001576"
                     /inference="COORDINATES: protein motif:HMM:NF033894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HGG0917678.1"
                     /translation="MAFLAGCGDEAKTSDYYKAHLDEAKARVAECKKMEKMNETQQRD
                     CSNAKWAVEMQTDNRVPYGIGKNENYNKDALKWK"
     gene            complement(808..2181)
                     /locus_tag="ACJFEZ_001577"
     CDS             complement(808..2181)
                     /locus_tag="ACJFEZ_001577"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HGG0917679.1"
                     /translation="MQQEHFDLDLERAILSSCIMSEDAYSSIAGDIEPKDFSLKAHQD
                     VFKAIIACVNAGEPISISFLKKHKKIDEQILTEIIATPSIIDLPAYVNELREKSIKRQ
                     LLSFAHLLPTRINDNRAVSEISDEIGKEIFNITNRVNTNDIKDIEIVLSELLEEFKKQ
                     KSLENKSVIGLDTGFEDLNTMTKGFKGGELIIIAARPGMGKTTLCLNFIEKVLRQDKG
                     VVMFSLEMPAAQIMQRMLSAKTSIPLQKILTADLNDNEWERIGDACNYYSKKKLFIYD
                     SGYATITDVRAILRRLKAQEESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRSLEQRANKRPMMSDLRESGAIEQDADTILFVYRDEVYREQDEK
                     ERENKAKAEGKPYQRNFIPNPMQENAEILVGKNRNGPVGVVEVLFLKEKSCFVDKPRF
                     ESVEFQE"
     gene            2323..3252
                     /locus_tag="ACJFEZ_001578"
     CDS             2323..3252
                     /locus_tag="ACJFEZ_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HGG0917680.1"
                     /translation="MKKTLFSFALASLFVSQASSIEFQSGLSGNLSLGVGVRDVKSNI
                     SPLANSDYLSGYNADNSDTAAIPFIGLELYYGNLIDNDRVFLKNYNGRDLSGIALGYE
                     RAYLERFSTSFSFISSLREKAYANPYFIGNREEIDVSKYGFRISQLYESDFGKFNASY
                     VFAKNKLDKESIEFASLKREGNYHELELSYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     KIGTHLVFARNYILTPSLSLNQYKADGTDPIFNQKQDGSITKFNLKLVKNQFLGYNSL
                     YGFTNYGLEKRNSDIDFYDETYHILLTGVGYKF"
     gene            complement(3275..4606)
                     /locus_tag="ACJFEZ_001579"
     CDS             complement(3275..4606)
                     /locus_tag="ACJFEZ_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HGG0917681.1"
                     /translation="MSNIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     NDALAALALIIPFIMISFALADMIAIGSAVQISMHLGLGKKHLARKIFSSSMLIIFLI
                     SCLVGILEYLLSPVLIDFLDVNEDIKSMAKECMLVFALFAPFTMCSFALDNYLRICGK
                     TTYSMTMNVIIALSNIVLDYIFIVVLGWGLFSAALATCLGLMLGGIFGIFPFLFQNLE
                     LKFSSLYMNMKIFKNIVYNGSSEFFGNISGSLYGIFANLVLLKISGTQAVAAFSIVSY
                     IDNFIIMLIIAMGDAMQPALSYNYAKKDFSRIKDILKVMFFAGAILSLLSVAMIFVLG
                     KDLVGLFTQENDQEFIIFAYMALMLFSFNYLFAWFNVLSGSFLTASNKASFSLILSLS
                     QNLFIPLCFLLILSSIMGLKGVWLSPFFAEFCVLVLACIFVRKVFKKLSFL"
BASE COUNT         1751 a          833 c          678 g         1481 t
ORIGIN      
        1 agttttctaa aacaaagcca cactcattgc aaaacttaaa caaaaccctg atgaaaaatt
       61 gcagactgca aaaaccactc aaaaaatcaa aatcacttat tatagattaa aataacatat
      121 ctactcatta cttagcaatc aaagaataat gcaacaggta aaaatggata aatttataaa
      181 agatgcaggt tgtattaaaa aaacttgaag taaatcaaac tcagacgctc ttaaatagaa
      241 ataaaataat gctaaaatat tttgtttcta tatcaaatca aggagaagaa caatgaaaca
      301 ttttattttt agtgggttaa ttggttgagg cgctttggct tttttagcag gttgtggaga
      361 tgaagcaaaa acaagcgatt attataaagc acacttagat gaggctaaag ctagagttgc
      421 agaatgtaaa aaaatggaga aaatgaatga aactcaacaa agggattgtt ctaatgcaaa
      481 atgggcagtt gaaatgcaaa ccgacaatcg tgttccttac ggaattggaa aaaatgaaaa
      541 ttacaacaaa gacgctctta aatggaaata aactagcgat tattttttta atttttcttg
      601 ctccaaattt agcttttggg gttgaaagtg cagaaggcgt tttaagcata atacacaatg
      661 ggcttttatc ttgaatgcct cttattaaaa ccgcttgttt atgggtattt tggactttag
      721 ttattattga tttagtttag acttttgact ttgttctctt tctaaatttc tttatggcaa
      781 attaagctcg acctatagag ttaatcccta ctcctgaaat tcaacactct caaatcgtgg
      841 cttatccaca aaacaagatt tttcttttaa aaataaaacc tcgacaaccc ctacaggacc
      901 atttctattt ttgccgacta aaatttcagc attttcttgc ataggattag gaatgaaatt
      961 tctttgataa ggcttgcctt cggctttcgc tttattttca cgctcttttt catcttgttc
     1021 cctataaacc tcatcacgat atacaaacaa aatcgtatcc gcatcctgct ctatagcccc
     1081 actttcacgt aaatcactca tcataggacg cttgtttgca cgctgttcta aagaacgatt
     1141 gagctgtgaa agcgcgatga taggcatatc aagctccctt gctaaaagct taagccctct
     1201 tgaaatttcg ctgacttgca aatgtctatc attaaaatta gaattactca tcataagccc
     1261 tatatagtcg atcacgcaaa gccctatact ttcttcttga gcctttaagc gccttaaaat
     1321 cgctcttaca tctgtaatag tcgcataacc actatcatag ataaataatt tctttttaga
     1381 ataataattg caagcatcgc caatgcgttc ccattcgtta tcatttaaat ccgcagtcaa
     1441 gattttttgc aaaggaatgg aagtttttgc cgaaagcatt ctttgcatga tttgagcagc
     1501 aggcatttca agcgaaaaca tcaccactcc tttatcctgt cttaaaacct tttctataaa
     1561 atttaagcac aaagttgttt ttcccatacc tgggcgcgct gcgatgatga taagctcccc
     1621 acctttaaaa cccttagtca tagtatttag atcttcaaat cctgtatcaa gtcctatcac
     1681 ggatttgttt tcaaggcttt tttgtttttt aaattcttcc aaaagctcgc ttaagactat
     1741 ttctatatct ttgatatcgt tggtgtttac acgattggtg atgttaaaaa tttccttgcc
     1801 gatttcatca gaaatttcac tgactgcgcg attatcattg atccttgttg gcaaaagatg
     1861 ggcaaagctt aaaagctgtc ttttaatcga cttttcgcga agttcattga cataagcggg
     1921 aagatctatt atcgaaggag ttgcgataat ctcggttaaa atttgctcgt ctattttttt
     1981 atgctttttt aaaaagctaa tcgatatagg ctctccagca ttcacgcaag caataatagc
     2041 tttaaaaaca tcctgatgag ctttaagact aaaatcctta ggttctatat ctcctgctat
     2101 actagaataa gcatcctcac tcataataca actacttaag attgcacgtt ctaaatccaa
     2161 atcaaaatgc tcttgctgca cctattttcc ttttttgagt aaaatttatt gaaagatttt
     2221 atctaaaaga atctaaaaat tcacataagc tttttataaa aaattaaagt aatattagtt
     2281 acaataaaat ttctaattat aaaaactatc aaggagttta tcttgaaaaa aaccttattt
     2341 tcttttgctt tggcctcttt atttgtaagt caagcttcat ccatagaatt tcaaagtggt
     2401 cttagcggaa atttaagcct aggagtaggt gtaagagatg ttaagagcaa tatctcacct
     2461 ctagcaaata gtgactatct aagcggatac aatgccgata attctgatac agctgctatc
     2521 ccttttatag gtcttgagct ttattatggc aatttaatcg ataatgatag agtatttctt
     2581 aaaaactaca acggaagaga tttaagcggt attgctttgg gttatgaaag agcttattta
     2641 gaacgcttta gcacttcttt ttctttcatt tcatctttaa gagaaaaagc ttatgctaat
     2701 ccttatttta taggcaatcg tgaagaaatc gatgtaagta aatacggctt tagaatttca
     2761 caactttatg aaagtgattt tggaaaattc aacgcttctt atgtttttgc aaaaaataaa
     2821 ttagataaag aaagtataga atttgcttct cttaaacgag agggaaatta tcatgagtta
     2881 gaattaagct ataattattc tttattaaat ttaggcttaa actatgatta taatgatgcc
     2941 gatggaaagg ctcaaagcta ctcaagatat ggctttaaaa taggaacaca tctggttttt
     3001 gcaagaaatt atatcctaac tccaagccta agcttaaatc aatacaaagc agatggcacc
     3061 gatcctattt ttaaccaaaa acaagatggt agcattacaa aattcaatct caagctcgta
     3121 aaaaatcaat tcttaggcta taactcactt tatggtttta caaattatgg cttagaaaaa
     3181 agaaatagcg atatagattt ttacgatgaa acatatcaca tcttacttac aggtgtagga
     3241 tataaattct aaaatcaatc caaagaaact atccttataa aaacgatagt ttcttaaaga
     3301 cttttctaac aaaaatacaa gctaaaacca aaacacaaaa ttcagcaaaa aatggactaa
     3361 gccacactcc ttttaagccc atgatagaag ataaaatcaa aagaaaacat aaaggaataa
     3421 aaagattttg actcaagctt aaaatcaaag aaaaactcgc tttattgctc gctgttaaaa
     3481 aagaaccact taaaacatta aaccacgcaa aaagataatt aaaagaaaac aacatcaaag
     3541 ccatataagc aaaaatgata aattcttgat cattttcttg agtaaataat cctactaaat
     3601 ccttacccaa aacaaatatc attgcaacag acaataaaga taaaatcgca cctgcaaaaa
     3661 acattacctt taaaatatct ttaatccttg aaaaatcttt tttagcataa ttataactta
     3721 atgcaggttg catcgcatca cccatagcga taataagcat aatgataaaa ttatcaatat
     3781 acgaaacgat agaaaaagcg gcaactgctt gagtgcctga aatttttaac aaaactaaat
     3841 tagcaaatat accatataaa gaacccgaga tattgccaaa aaattcactg cttccattat
     3901 aaactatgtt tttaaaaatc ttcatattca tatacaaact tgaaaattta agctctaaat
     3961 tctgaaataa aaaaggaaaa attccaaaaa taccgcctag cataagcccc aagcaagtcg
     4021 caagagctgc tgaaaacaag ccccaaccca acacaacgat gaaaatataa tcaagcacta
     4081 tattactcaa tgctataatc acattcattg tcatactata agttgttttt ccgcaaattc
     4141 taagataatt atccaaagca aaagaacaca tagtaaaggg ggcgaacaaa gcaaatacaa
     4201 gcatacactc ttttgccatt gatttgatat cttcatttac atctaaaaaa tcgatcaaaa
     4261 caggacttaa aagatattct aaaataccta ccaagcatga aataaggaag ataattaaca
     4321 tactagaact aaagattttt ctagctaaat gtttcttccc aagtcctaaa tgcatagaaa
     4381 tttgcacagc tgaaccaatg gctatcatat cagccaaagc aaaagatatc ataataaaag
     4441 gaataatcaa ggccaaagct gctaaagcgt catttcctag atattttcca acaaaaattc
     4501 catcaacaat ataataaaaa gaaataaatg ccatgcttat tacattaggc acagcacatt
     4561 taacaaaaag cctaaaaggg cttaaggtgc taaaaatatt tgacataaaa aatcctttaa
     4621 aatatttaac aatacaaata tcttaaaagg agctaataga gtgtttgaag tcctagtatg
     4681 tagaaagcta agcgataggt ttctatcggt atgatttttt tattgttttt atcttgtgtt
     4741 tgc
//
LOCUS       DBBXRO010000126         4738 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.127, whole genome shotgun sequence.
ACCESSION   DBBXRO010000126 DBBXRO010000000
VERSION     DBBXRO010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4738
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.127"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(27..785)
                     /gene="map"
                     /locus_tag="ACJFEZ_001580"
     CDS             complement(27..785)
                     /gene="map"
                     /locus_tag="ACJFEZ_001580"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HGG0917682.1"
                     /translation="MIELKKPAEIEKLRVANQIVAKTLDFLENEIKAGMSLKQIDKMA
                     EDFILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDEKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGKISSTDEALISCAKDALYHAIDIIREGMRFKELSAALGEFIDLRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHF
                     NGKWGAGSVDELNSAHYEHCVAIINGRAEILSSL"
     gene            complement(795..1538)
                     /gene="murI"
                     /locus_tag="ACJFEZ_001581"
     CDS             complement(795..1538)
                     /gene="murI"
                     /locus_tag="ACJFEZ_001581"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HGG0917683.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIVKFCLEALDFFSKFNIDMLIIACNTASAYALDALRLKADFPIYGVIDAGVEATKK
                     ALLDKNKKILVIATKATIQSKEYQNRLQKQGFNNVDALATGLFVPMVEEGIFEGELLQ
                     SAMRYYFKGIETPDALILACTHFPLLANSLSVYFGSKTKLIHSGDAIVEFLKQRQKLL
                     LKEEKAKLHFYASSDVKSLENTAKIWLNL"
     gene            complement(1540..2004)
                     /locus_tag="ACJFEZ_001582"
     CDS             complement(1540..2004)
                     /locus_tag="ACJFEZ_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HGG0917684.1"
                     /translation="MRFVIFFLVVIAFYIGGCSLAQNASHTPTNYNVDKETRLRMIAN
                     EWKKTPYVLGGTTKKGADCSGFAQSTLAQFNTRIPRTTTKQLRSGIKVSKSKLKTGDL
                     VFFKTGRGPNGMHVGIYMSKGKFIHLSTKGGVREVDLNSSYWKNRYIGARRY"
     gene            complement(2013..3182)
                     /gene="nhaA"
                     /locus_tag="ACJFEZ_001583"
     CDS             complement(2013..3182)
                     /gene="nhaA"
                     /locus_tag="ACJFEZ_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HGG0917685.1"
                     /translation="MNNIVHKLRTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     GALGGILIPALIFAIVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSVAAFVVVGIAIFMMLILNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEVFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRP"
     gene            complement(3179..4327)
                     /gene="nhaA"
                     /locus_tag="ACJFEZ_001584"
     CDS             complement(3179..4327)
                     /gene="nhaA"
                     /locus_tag="ACJFEZ_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HGG0917686.1"
                     /translation="MQAVKKIILSETFPGILLIFFTLLALLFKNSSLSVIYTDFFHAN
                     FTIGFDHFQIAKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRSVSLPIFGALG
                     GMIVPALIFSAINYSHEFAMKGWAIPTATDIAFAVGILMLLGNRIPSSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIIALFVPLDTKNKKPYLHEVHKDLNPWVVYFILPLFAFANAGIDLR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFGFCYLAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIIK"
     gene            complement(4453..4635)
                     /locus_tag="ACJFEZ_001585"
     CDS             complement(4453..4635)
                     /locus_tag="ACJFEZ_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative motility protein"
                     /protein_id="HGG0917687.1"
                     /translation="MISDATMSNANLLTAVNTSVLKKSMDTNEVLMNELIKGMESASG
                     ASALQTSSSSGLDIYA"
BASE COUNT         1797 a          932 c          587 g         1422 t
ORIGIN      
        1 tttcccaatt tttacaaata aaactcttat aagctagata aaatttctgc gcgcccatta
       61 ataatagcca cacaatgctc ataatgagca ctattaagct catccacact tcctgcaccc
      121 cattttccat taaaatgctt tggagttcca tccttttggc atatcatagg ttctatacaa
      181 aaaaccattc catttttaat ttttggacca ctttttgcgc ttgcgccttt ttctaaataa
      241 tttaaaattt caggttctcc atgaggtttg cgtcctatac catggccaca atatccacga
      301 agcggaacaa aacctcttaa atctataaat tctcccaaag ctgcagaaag ctctttaaaa
      361 cgcataccct cacgaataat atctatggca tgatataaag cgtctttagc acaagaaatc
      421 aaagcctcat ctgtggatga aattttacct atagctatag tacgcgctgc atcaccataa
      481 tatccatcaa tcaaacttcc cacatcaagt cctaaaatat caccctcttt gatgattttt
      541 tcatcaggaa ttccatggat acaaacctga tttaaagaag tgcaaattgc accaggaaaa
      601 ccataaagcc ctttaaatga aggttttgct ccaagactta agataaaatc ttccgccatc
      661 ttatcgattt gcttaagact catacccgct ttaatctcgt tttctaaaaa atccaaagtc
      721 ttagcgacga tttgatttgc tactcttaat ttttctattt ctgctggttt ttttaattct
      781 atcattgtat ttccttataa atttagccaa attttagcag tattttctaa agacttgaca
      841 tcacttgaag cataaaaatg taattttgct ttctcttctt ttaacaaaag tttttgcctt
      901 tgttttaaaa actctactat agcatctcct gaatgaataa gctttgtctt tgaaccaaaa
      961 taaacactca aggaatttgc tagcaaagga aaatgagtac aagcaagtat caaagcatca
     1021 ggagtttcaa tccctttaaa ataataccgc atagcacttt gcaacaactc tccttcaaaa
     1081 ataccctctt caaccatagg cacaaaaaga cccgtagcta aagcgtctac attattaaaa
     1141 ccttgttttt gcaaacgatt ttgatattct tttgactgaa ttgttgcctt tgtggcaata
     1201 actaaaattt ttttattttt atctaacaag gcttttttag tagcctcaac acccgcatca
     1261 ataaccccat aaataggaaa atcagctttt aatcttaagg catctaaagc ataagcacta
     1321 gcagtattgc acgcaataat aagcatatcg atattaaatt ttgaaaaaaa atccaaagcc
     1381 tcaagacaaa atttgactat agtatcttta tctttaaccc cataaggaac gcgggcagta
     1441 tctccataat aaataatttc gtcaaaaagt cttgcctcat aaagtgattt taaaacacta
     1501 agtccaccta caccactatc aaaaacgcct attttcatct taatatcttc tagcacctat
     1561 atatcgattt ttccaataag aactatttaa atccacttct cttactccac cctttgtaga
     1621 aagatggata aatttaccct tactcatata aattcccaca tgcataccat ttggtcctct
     1681 acctgtttta aaaaaaacaa gatctcctgt ttttagtttt gatttagaaa cttttatacc
     1741 cgagcgtagt tgctttgttg tagtgcgtgg tatgcgtgta ttaaactgag ctagggtgct
     1801 ttgagcaaaa cccgaacaat cggctccttt ttttgttgtt ccgcctaaaa cataaggagt
     1861 ttttttccat tcattagcaa tcattcttaa tcttgtttct ttatcaacat tataatttgt
     1921 tggggtatga cttgcatttt gagctaaact gcatccacct atataaaaag caatcacaac
     1981 aagaaagaaa ataacaaatc tcataaattt ccttaaggac gcgtggtaaa aaatttaaga
     2041 taaataaaac cccaaatccc agaacaaaat gaagcaatca aaatagcaag attatctgca
     2101 taattaaaaa tatcgctaac ttcatacgcc aagccatcga taaacaaact cattgtaaaa
     2161 ccaattcctg taagtataca aaccccataa agttgtttca aatttgaacc ttggggcaag
     2221 gctgcaaatt taaagcggat tgccaaataa gaaaacaaaa atacacccac ttgtttaccc
     2281 acaaaaagcc ccaagaaaat acctatactt acacctgaaa aaattgctcc tatatcgata
     2341 ttggataaat ttactccagc gttagcaaaa gcaaataaag gcaagataac aaaagcgagc
     2401 caaaatttta gactttcata gatttcttct aaaaatactt ctccattttt agtttgcatc
     2461 ggtataaaaa atgctgtaat aattccagct aaagttgcat gcacaccact ttttaaaaca
     2521 ctaatccaaa gaataactga gcaaataaaa taaaaagact ttcttgttat tcctaaaata
     2581 tttaaaatca acatcataaa aatagcaata cccacaacta cgaaagcagc cacagaaagc
     2641 ttggttgtat aaaaaatcgc aataattaaa atagcaccca catcatcaaa aatagccaaa
     2701 gaaagtaaga aaatttttaa acttgatgga atatgtttgc cacacatcat caaaatagct
     2761 aaagcaaatg cagtatctgt agccgttgga atagcccatc cttttaaagt gtaagcatcg
     2821 cctatattga ctatagcaaa tattaaagca ggtataagta taccacccaa tgcccccata
     2881 aaaggcaaaa caatattttt aggattttta aaatctccgt gcaaaaattc cttcttaagc
     2941 tcaagcccta tagcaaagaa aaatatagat ataagcccat catttatcca aagtaaaaaa
     3001 ggcttgttaa gctcaaattc acctacacta aatccgactt ttaaatttag aaattctcga
     3061 taatgttcgc taaaagaccc gttttgcaca agcaaagcaa gcaaagtgca aactataagt
     3121 aaaacgccgc caaaagcctc atttaaaact aaagttctta atttatgtac tatattattc
     3181 atttaataat cttaagataa ataaaaccaa caatggcact taaaaaacta gctactaaaa
     3241 tagcaagttt atccgcatat tcaaaaatat cactattttt ataagccaaa ccatcaataa
     3301 acaagctcat cgtaaaaccg atgcctgtta aaatacatat accataaaat tttccatatt
     3361 taatattttc aggtaatttt gcaagcttta attttatagc caaataacaa aatccaaaaa
     3421 cccctagttg ttttcctaaa aatagtccta aaataatccc aagacttaca ggagaaaata
     3481 ctgaaccaag atgcatatct cttaaatcaa tacccgcatt tgcaaaagca aataaaggca
     3541 aaataaaata aaccacccaa gggtttaaat ccttatgcac ttcatgaaga tagggttttt
     3601 tatttttagt atcaagaggg acaaataaag ctatgattac acccgctaaa gttgcatgca
     3661 ctccactttt aagcatagct atccacaaca caacacctac caacacgtac aaagaaagat
     3721 gggtgatgtg ataataattt aacaaaagca gagcaaatat acaaaacaaa caaataataa
     3781 ttgctaaagc tgaaagctga tctgtataaa acaaagcaat aataacaata gcacccaaat
     3841 catcaaaaat agctaaagaa agtaaaaaca gcttaagact agaaggaatt ctatttccta
     3901 aaagcattaa aatacctact gcaaatgcta tatctgtagc tgttgggata gcccatcctt
     3961 tcatagcaaa ttcatgagaa taattaatag cagaaaaaat caaagcaggg acaatcatac
     4021 ctcccaaagc tccaaatata ggtaaagaaa ccgatcttat atttttaagt tgtccgcgta
     4081 aaatttcata ttttaattca agtcctatac aaaggaaaaa aatagcaatc aaaccatcat
     4141 ttatccataa atccaaagat ttagcaatct gaaaatgatc aaatcctata gtaaaattag
     4201 catgaaaaaa atctgtataa ataacgctta aggaagaatt tttaaaaagt aaagccaaga
     4261 gagtaaaaaa tatgagcaaa atgcctggaa aagtttcact taaaattatt ttctttacag
     4321 cttgcattta cgccccttga ttataaaatt caatatgtta attattataa ccaaaaaata
     4381 ttaaagaaat gattatttta acaagatata tccttattta gggtgtaaag cacaccctaa
     4441 atttaaagat acttaagcgt aaatatctaa accgctagag ctagaagttt gcaaagcaga
     4501 agcccccgat gcactctcca tacctttgat aagctcattc atcaacactt catttgtatc
     4561 cattgatttt ttcaaaactg aagtatttac cgctgttaat aaattagcat tactcatagt
     4621 tgcgtctgaa atcataacac cctcctaagt ataatttatg tatgaagact taagtagtat
     4681 cggaaaaaat tttaaacact taacccttta attcgataaa aataattttt atttttgt
//
LOCUS       DBBXRO010000127         4715 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.128, whole genome shotgun sequence.
ACCESSION   DBBXRO010000127 DBBXRO010000000
VERSION     DBBXRO010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4715
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.128"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1001)
                     /locus_tag="ACJFEZ_001586"
     CDS             complement(<1..1001)
                     /locus_tag="ACJFEZ_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HGG0917688.1"
                     /translation="MNENILKSLDSSEKETLQKGLQSLIEQTYIVENEYKILNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKKPKLLDIISLEKNRDELEFENRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFSR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINANEFNLLELTEECESAINSYNY
                     SSQIDFEIKFLDMKIYGDKALLSLVLQNLIYNAIDAIEESECENPKIKIQASCDEQNL
                     YIRVYDNGCEIKDENLVFEAFRTTKLKGNGLGLSLSKEIINAHKGELKFEIQPKNFY"
     gene            complement(998..1882)
                     /locus_tag="ACJFEZ_001587"
     CDS             complement(998..1882)
                     /locus_tag="ACJFEZ_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF234 domain-containing protein"
                     /protein_id="HGG0917689.1"
                     /translation="MLLKRKNINFNHFAKFCNTSALAKIFDFYSVFEGFESLDSLNFE
                     EDVFENIEYLLLKNYLHIKDYFKLDETASYALSLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLRAGIIKLEHSKEAKRIKDKRQKLKKELRSYVIQDKIIFANHFTRFFFYFLKPNE
                     KLILQNHYEEVLGLIKEKFELYQSFCFEQLSRELLEKKFQVSGVQSYWDKNLELDLYY
                     KDDEISFIGEVKFKNKKICRNILNLLESKAKSLKLEPNNYIIISKNGFSKEFYKICKQ
                     DLLLLDLNDFKILLEEDK"
     gene            1917..3191
                     /locus_tag="ACJFEZ_001588"
     CDS             1917..3191
                     /locus_tag="ACJFEZ_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HGG0917690.1"
                     /translation="MCLQISDLKKEIILKKGTLHFDFTASALALKCVEKEIAKILPSY
                     ANTHSDSSLNSFKTQQIYEQARKDIKTSLDLSDEFALIACGSGSSSAIKKFQELLGIY
                     IPPLIKEKYFDKVDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKKGNIDFEIL
                     EKVLKENQYRKIIASFSLASNVTGILSDYKRISKLVRKFKGIVAFDASSFIPYKNIAC
                     KYYDALFISSHKLIGGIGGSGLLAIKKELCGSKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDEIGIEEIEKKEEILKEYFFEKLKIIPHLILYANNI
                     KTRLPIFAFNIKNISPFDLAYELSKKYHIETRAGCACAGPYGHDLLGLKDNEELKTKP
                     GWLRISLHYTHEKEDIDYFFEALQKSIAKLKF"
     gene            complement(3195..3271)
                     /locus_tag="ACJFEZ_001589"
     tRNA            complement(3195..3271)
                     /locus_tag="ACJFEZ_001589"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3235..3237),aa:Asp,seq:gtc)
     gene            complement(3293..3368)
                     /locus_tag="ACJFEZ_001590"
     tRNA            complement(3293..3368)
                     /locus_tag="ACJFEZ_001590"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3333..3335),aa:Val,seq:tac)
     gene            complement(3377..3452)
                     /locus_tag="ACJFEZ_001591"
     tRNA            complement(3377..3452)
                     /locus_tag="ACJFEZ_001591"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3417..3419),aa:Arg,seq:tct)
     gene            complement(3466..3541)
                     /locus_tag="ACJFEZ_001592"
     tRNA            complement(3466..3541)
                     /locus_tag="ACJFEZ_001592"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3506..3508),aa:Lys,seq:ttt)
     gene            complement(3545..3621)
                     /locus_tag="ACJFEZ_001593"
     tRNA            complement(3545..3621)
                     /locus_tag="ACJFEZ_001593"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3585..3587),aa:Asp,seq:gtc)
     gene            complement(3643..3718)
                     /locus_tag="ACJFEZ_001594"
     tRNA            complement(3643..3718)
                     /locus_tag="ACJFEZ_001594"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3683..3685),aa:Val,seq:tac)
     gene            complement(3731..3806)
                     /locus_tag="ACJFEZ_001595"
     tRNA            complement(3731..3806)
                     /locus_tag="ACJFEZ_001595"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3771..3773),aa:Lys,seq:ttt)
     gene            complement(3868..4653)
                     /locus_tag="ACJFEZ_001596"
     CDS             complement(3868..4653)
                     /locus_tag="ACJFEZ_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0917691.1"
                     /translation="MSLFIQKCKNFKFQAPLSKKTIFFNSLVLIFILSLFFYFSFSVS
                     AYHFNFVSLLEYKNKIIYGFFQTLSVSFFALICSIFLGIVICFFSLSKIIILRFFATL
                     YVELIRGTPLLVQVLLVFYIIANSLGFDDRYIVGIFILSMFSAAYLSEIFRAGILSVP
                     IIQIESARALGLSERQIFLYIIFPQAIKNILAPISGQLANLIKDSSLLSVIALNELTQ
                     SIQEVNSYIFATLEGYIVLAFAYLILTLPIGVFSRYLERKYQK"
BASE COUNT         1656 a          808 c          712 g         1539 t
ORIGIN      
        1 aaataaaaat ttttaggctg aatttcaaat tttaactccc ctttgtgagc gttaatgatt
       61 tctttagaaa gcgataagcc caacccattt cctttgagtt tagtagttct aaaagcttca
      121 aagaccaaat tttcatcttt gatttcgcaa ccattatcat aaactctaat gtataaattt
      181 tgctcatcac agcttgcttg aattttgatt ttaggatttt cacactcgct ttcttcaatc
      241 gcatctatgg cattataaat taaattttgc aaaaccaaag acaaaagtgc tttatctcca
      301 taaattttca tatctaaaaa cttaatttca aaatcaattt gagatgagta gttgtaagaa
      361 tttatggcac tttcgcactc ttctgttaat tctaaaagat taaactcatt tgcattgatg
      421 tgcacacctt tagtaaaaag taaagtagaa tttacgatac gctctaccct agcaatagcc
      481 ttttgaattt caagtacgat atgtttgttt ttaagttcgc tacgagaaaa aagtgtagaa
      541 gcaagcaagg atatagatcc tataggattt cttatctcat gtgctaaatg cgccgccaca
      601 cttcccatac tagcaagtct ttcattacgc ttttcatcgc taatatccgt agctgaaact
      661 atggtttttt cattatgagc gataatttta accgcataaa atctattctc aaattcaagc
      721 tcatcacgat ttttttcaag actgataata tcaagcaatt taggtttttt caaggcttct
      781 tgattttgca aaataatatt tttttcttta tctaaaatcc aaagcgcact aggcaaaacc
      841 tcgataatct catctaccat agcacgcaaa gaattgtaat tttcatttaa aattttatat
      901 tcattttcta cgatataagt ttgctctata aggctttgta agcctttttg taaggtttct
      961 ttttcacttg aatcaagact ttttaaaata ttttcattca tttatcttcc tctaataaaa
     1021 ttttaaaatc atttaaatct agcaaaagta aatcttgctt gcaaatttta taaaattctt
     1081 tactaaaacc attttttgaa atgataatat aattatttgg ttctaacttt aaagattttg
     1141 cttttgattc taaaagattt aaaatatttc tacaaatttt tttattttta aatttaactt
     1201 caccgataaa acttatctca tcatccttat aataaagatc aagttctaaa tttttatccc
     1261 aataactttg caccccactc acttgaaatt ttttctcaag taattcccta gagagctgtt
     1321 caaaacaaaa actttgataa agctcaaatt tctctttaat caatcccaaa acttcttcat
     1381 aatgattttg taaaatcaac ttttcattgg gctttaaaaa ataaaaaaag aaacgggtga
     1441 agtgattggc aaagataatt ttatcttgta tcacataaga tctcaattct tttttaagtt
     1501 tttgtcgttt atcttttatc ctttttgctt ctttgctatg ctcaagtttt ataatccccg
     1561 ctcttaaaag atattttaaa gttgataaag ctttaaaatg ctgaattttt ctattgatag
     1621 aaaaacgctt acgattgttt ttagccagta agctaagagc ataagaagcg gtttcatcaa
     1681 gcttaaaata atctttaata tgtaagtaat ttttcaataa aagatattct atattctcaa
     1741 acacatcttc ttcaaaattt aaactatcta aactctcaaa accctcaaaa acactataaa
     1801 aatcaaaaat tttagctaaa gctgaagtat tacaaaattt tgcaaaatga ttaaaattta
     1861 tatttttcct ttttaaaagt atttttatag tataatttta gcaaattttt aaaggattgt
     1921 gcttgcaaat ttcagattta aaaaaagaaa taattttaaa aaaaggcacc ttgcattttg
     1981 actttacagc tagtgcttta gcgctaaaat gcgtggaaaa agaaattgct aaaatactac
     2041 caagctatgc caatactcat tctgatagct ctttaaactc ttttaaaact caacaaattt
     2101 atgaacaagc acgcaaagat atcaaaacaa gccttgattt aagcgatgaa tttgcactta
     2161 ttgcttgtgg atcaggctct agcagcgcca ttaaaaaatt tcaagaattg cttggaattt
     2221 acatcccgcc acttatcaaa gaaaagtatt ttgataaagt ggataaaaac accctaccct
     2281 tagttatcgt agggccttac gaacatcatt ctaacgagct ttcttttcgc gaaggtttgt
     2341 gtgaatgcat aagaattccc ctagataaaa aaggaaatat agactttgaa atcttagaaa
     2401 aagttttaaa agaaaatcaa tacagaaaaa tcattgctag tttttccctc gcttcaaatg
     2461 ttacaggtat attaagtgat tataaacgca tttctaagtt agtgcgtaaa tttaaaggca
     2521 tagtcgcttt tgatgcgtca agctttatcc cttataaaaa tatagcctgc aagtattatg
     2581 atgctttatt tataagctct cataaattaa tcggcggcat aggaggttct ggtcttttag
     2641 caattaaaaa agaactttgc ggaagtaaac ctagttttgc cgcaggaggg actgtaggct
     2701 atgtttcgcg tacctctcaa tgctatcttt gcaatgaaga ggctttagaa gaaggaggga
     2761 ctcctggaat tttacaactc attcgtgcga gcttagcttt taaaataaag gatgaaatag
     2821 gcatagaaga aatagaaaaa aaagaagaaa ttttaaaaga atacttcttt gaaaaactaa
     2881 aaataatacc tcatttaatc ctatatgcta ataatataaa aactcgctta cctatctttg
     2941 cttttaatat taaaaatatt tctccttttg acttagccta tgaactgagt aaaaaatacc
     3001 acatagaaac acgtgcggga tgtgcttgcg ctggtcctta tgggcatgat ttattgggct
     3061 taaaggacaa tgaggaatta aaaactaaac cgggttggct aagaattagt ttgcattata
     3121 ctcatgaaaa agaagatatt gattatttct ttgaagcact gcaaaaaagt atcgctaaat
     3181 taaaatttta aagatggcgc agcggacggg gctcgaaccc gcgacctccg ccgtgacagg
     3241 gcggcattct aaccagctga actaccgctg cacctaagaa gtaataattt aatggtggtc
     3301 gctataagac tcgaacttat gacatccacc ttgtaagggt ggcgctctac caactgagct
     3361 aagcgacctt aatttttggc gacccctaga ggatttgaac ctctgtttcc acacagagag
     3421 agtgttgtcc tgggccacta gacgaaaggg tctaaacccg ataagtggtg tcccgtgttg
     3481 gattcgaacc aacggccccc tccttaaaag ggagatgctc taccggctga gctaacgaga
     3541 catatggcgc agcggacggg gctcgaaccc gcgacctccg ccgtgacagg gcggcattct
     3601 aaccagctga actaccgctg cacctaagaa gtaataattt aatggtggtc actataagac
     3661 tcgaacttat gacatccacc ttgtaagggt ggcgctctac caactgagct aagcgacctt
     3721 aaaaaataaa tggtgtcccg tgttggattc gaaccaacgg ccccctcctt aaaagggaga
     3781 tgctctaccg gctgagctaa cgagacattt tttaaatgaa aatgtgatta tgccaaaata
     3841 tatatcgatt tgtcaaggaa atttagctta tttttgatat tttctttcta aatagcgtga
     3901 aaatacacct ataggtaagg ttaagataag atatgcaaaa gctaaaacga tatatccttc
     3961 caaggttgca aagatatatg aattcacttc ttgtatactt tgggtaagct cattaagtgc
     4021 aatcacgctt aataaagaac tgtctttgat aaggttagca agttgcccac taataggagc
     4081 taaaatattt ttaatagctt gaggaaaaat gatgtataaa aaaatttgcc tttcgctaag
     4141 tcctaaagcc ctagcgcttt ctatttgaat gataggtaca cttaaaatcc ctgctctaaa
     4201 aatttcagat aaataagctg ctgaaaacat ggaaaggata aatatcccta cgatgtagcg
     4261 atcatcaaat cctaagctat ttgcaatgat ataaaaaact aaaagcactt gcacaagcaa
     4321 gggggttcct cgtataagct ccacatataa agtagcaaaa aatctcaaaa taataatctt
     4381 acttaaagaa aaaaagcaaa ttacaatccc caaaaatata ctgcatatta aagcaaaaaa
     4441 actaacagat agggtttgaa aaaaaccata gataatttta tttttatatt ctagtaaaga
     4501 aacaaaattg aaatgataag cactcacact aaagctaaaa taaaaaaata agcttaaaat
     4561 aaaaattaaa accaaagaat taaaaaatat cgttttttta gaaagtggtg cttgaaattt
     4621 aaaattttta catttttgta taaataaaga caagttttct ccttttattg tagatatttt
     4681 agccaaagtc taattaaatt taattaagct ctaat
//
LOCUS       DBBXRO010000128         4477 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.129, whole genome shotgun sequence.
ACCESSION   DBBXRO010000128 DBBXRO010000000
VERSION     DBBXRO010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.129"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..851
                     /gene="zupT"
                     /locus_tag="ACJFEZ_001597"
     CDS             <1..851
                     /gene="zupT"
                     /locus_tag="ACJFEZ_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HGG0917692.1"
                     /translation="VAMALTILAGLSTAIGSVIAFFSRNDNLRILSFGLGFSAGVMIY
                     ISFMEILPSAFTDFKKYYNSNYGELLALLCFFGGIFLSAIIDKFIPEDVNPHDPKEDL
                     SELKICPLPQKNEKAPAFHAGEPLKKINVKALKRTGIFTALAIAIHNFPEGFATFISS
                     LDNLSFGVAIAVAVAIHNIPEGMAVSLPIYHATKDKKKAFIYSALSGVAEPMGAIVGA
                     FLILPIMNELTLAITFAVVAGIMVFISFDELLPAAKTYDKAHDSLYGLVLGMAVMAVS
                     LILLNP"
     gene            complement(905..1476)
                     /gene="cdtC"
                     /locus_tag="ACJFEZ_001598"
                     /pseudo
     CDS             complement(905..1476)
                     /gene="cdtC"
                     /locus_tag="ACJFEZ_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782075.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cc-CdtC"
     gene            complement(1486..2279)
                     /gene="cdtB"
                     /locus_tag="ACJFEZ_001599"
                     /pseudo
     CDS             complement(1486..2279)
                     /gene="cdtB"
                     /locus_tag="ACJFEZ_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782078.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cc-CdtB"
     gene            complement(2312..3088)
                     /gene="cdtA"
                     /locus_tag="ACJFEZ_001600"
                     /pseudo
     CDS             complement(2312..3088)
                     /gene="cdtA"
                     /locus_tag="ACJFEZ_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782080.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cc-CdtA"
     gene            complement(3076..3453)
                     /locus_tag="ACJFEZ_001601"
     CDS             complement(3076..3453)
                     /locus_tag="ACJFEZ_001601"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917693.1"
                     /translation="MPPAIGAMVIIFFMIIGYFTSNNLYMVTFFAAMAGCLVYIPQFL
                     ASVQTMEVVPAFAVGSCVGLRGFMSYVVGASLGTKAIGWAVDYYGSWNAGLIMFLSAC
                     ILCILCSILCHFGAKKKEDICKK"
     gene            complement(3649..3816)
                     /locus_tag="ACJFEZ_001602"
     CDS             complement(3649..3816)
                     /locus_tag="ACJFEZ_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate transporter"
                     /protein_id="HGG0917694.1"
                     /translation="MLYAVKGSPKNEGLVDITEINEMRGIKTEEIKAIETPNLSSFEI
                     FYHYVLKNKNA"
     gene            complement(4164..>4477)
                     /locus_tag="ACJFEZ_001603"
     CDS             complement(4164..>4477)
                     /locus_tag="ACJFEZ_001603"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917695.1"
                     /translation="GGGACMFDFFKPKVKAIKFPKEEILPRYYKMRTWSLSGVFIGYM
                     GYYLVRNNITLSTPFIPNQLELSKSGIGTITGSMLIAYGISKGAMSVLSDKADPKNTW
                     L"
BASE COUNT         1454 a          851 c          764 g         1408 t
ORIGIN      
        1 tagtagcgat ggctttgacc atccttgccg gactttcaac cgctattggt tctgtgatag
       61 cattttttag cagaaatgac aatcttagaa ttctttcttt tggccttggt ttttctgctg
      121 gagtgatgat atatatctct tttatggaaa ttttaccctc tgcttttaca gattttaaaa
      181 aatactataa ttcaaactat ggagaacttt tagcactttt gtgttttttc ggtggaattt
      241 ttttatcagc catcatcgat aaatttatcc ccgaagatgt caaccctcac gatcctaaag
      301 aagatctaag cgagcttaaa atttgccctt tgcctcaaaa aaatgaaaaa gcacccgctt
      361 ttcatgcagg tgaaccttta aaaaagatca atgtaaaggc attgaaaaga acagggatat
      421 ttactgcact tgccatagcg atacataatt ttcctgaggg ttttgcgact tttatctcaa
      481 gccttgataa tcttagcttt ggtgtggcta tcgctgtggc tgtagctata cacaatatcc
      541 ctgaaggaat ggcagtttct ttaccgattt atcatgctac aaaggataag aaaaaagcct
      601 ttatttactc tgcactttcg ggtgtagccg agcctatggg agcgattgtg ggagcgtttt
      661 tgatcttgcc tatcatgaat gagcttactt tagccatcac ctttgctgta gtggctggga
      721 tcatggtgtt tatctctttt gatgagttat tgcctgcggc aaagacttat gataaagccc
      781 acgatagcct ttatggactt gttttaggaa tggcggtaat ggcggtgagt ttgattttgt
      841 taaatccttg agttaaatca agttataaac caagccatga aagcttggtt ttgttagaaa
      901 agtgttagta aattgcactt gcttcgatta tagcagggga gaagaagaaa agtttgctta
      961 atacagttac gatagaacga tccaaaaggc attctcctaa accaaagcga ttttctatgg
     1021 cgatactaga gtcaggaaaa gtgctcatgc attgattgcc accattggtt aaagatctaa
     1081 tttgtataga accatttgtc attagtatga tagaaaaata gtctgcattg ttccatcttg
     1141 caaatcttgt ttgcaagatt tggtgccaaa acttttttca cttaaaacag ctaggcatat
     1201 atcatcgccc ctagggctta taaactgaac atagccaaaa ggcaaatctt ttgcgtgcat
     1261 atccctagct tttagctcat catttgctac aatctctttt aaaaaccaat tttgatcttc
     1321 taatcttttt gaagtttttc taaaaggact taaagaaatt cctgtttcta aagatcttat
     1381 agcaaacata ggagtaaagt ctgctaattc atccaagcta ggctctgctt tcaaaaagct
     1441 caaaagggca aaaaataaaa taaaaatttt tttcatatta agctcctaag gtcttctaaa
     1501 atttacagga aaatgatctg aagccaaaaa ggttcttaat cctgctaaag ctaaaatcgc
     1561 aactatcggt ggtgggttgt ataaagctgc agtgttggaa tttccagtga tagcataatc
     1621 aatcgttctt ccacttgttt gcgtagaaga aggcggaaca actacgcgag tgcgcgctct
     1681 taagtcagga tctagcaagg ttactaaggc gcctgattct ctattaaaat cgcctaaaat
     1741 catccaatta atatcatgtc tatttctaaa aaacatatcc acagcagcga caatggctcc
     1801 tgcgtcattt cccccacttg ctagagtgtg tatattgaaa aaagcatcat tgcctatgcg
     1861 tatgcctata ataggtcttg aagcaactgt tggaggggta aaacaaaaac ttcatccgct
     1921 tgcactctgc taacgatagc taaattcaca cgatttgctc ctacatccac tctagaataa
     1981 tatatataaa cagagctagg tcttgataca gagcctaaat tccatatgta ttcatgtata
     2041 ggaataccca cgcccacggg tcgtacctgt ctaggagtca tcatagctgt actaggtaaa
     2101 acccccgctt cttgaacagc taaaacatcc ataggatttg caccggttat gagttgtctt
     2161 atactaacat tccatttgct ttcagttgca gctgatgagc cttgcaaatt ccaagttccg
     2221 gtgttgtaat tttctaaagc ggcaaataat acattaaaac ttaaaatcaa aaatactatt
     2281 ttttcattat cttcctttca tagcgaaaaa attaaatagg agcgcctata taccactgtc
     2341 tatccaaatt cttttctttt tctttcaaac aatcggttaa ataaatatta taaaagctca
     2401 aattaaattc ttccattaca tttgaaacag gtgtttgtat acattgttgg gtggcaaaat
     2461 tttgaatttg ataagctcca ttagtcatcg gataaagtct ctaaaactgc gcaaaatttg
     2521 tttgatcaca aggataatga acgatgccat ttctataggc gtttaagcaa gtaaatgttt
     2581 ttgcattttt aatcattact gtattgtttg gaaattcaat aagctgccaa gctcttgcat
     2641 ctccaaaagg tctactagca aataaactat atccccatat ccaattgcca ggatttaaag
     2701 cccagattgt taaagatgct ccattaggat tcataatagt gacaaaatca cttaccatac
     2761 ctgtgttttc gtataaagca tttgaagcaa attcgtttgg agattttagc cttggcaatg
     2821 gacctttgac ggcattatct cctttaaagg tattaggagt gattacaggt gggacaagtg
     2881 gtatggcggg aaatttttta ccttctacca agcttggtgt tttttgtttg acagggggtg
     2941 taggttttga accaagtttt aaaggatcgt tatcgttaaa tttaccataa gatcttccta
     3001 aaggattgat ttgttgttct tttgaagaac aagctgaaaa aatgattgtt acaatcaaaa
     3061 acattaggct taattttatt ttttgcatat atcctctttt ttcttagcac caaaatgaca
     3121 caagatagag caaagtatac aaagtataca agcactaagg aacatgataa gaccagcatt
     3181 ccaactacca tagtaatcca cagcccagcc tatagctttt gttccaagtg aagcgccgac
     3241 tacataactc ataaaaccac gaagtcctac acaagatcct actgcaaaag caggaacgac
     3301 ttccatagtt tgtacacttg ctaaaaattg tggtatatag accaaacacc ccgccatagc
     3361 tgcaaagaaa gtaaccatat aaagattatt tgaagtaaaa tatccaataa tcataaagaa
     3421 aataatcacc atagcaccta tagcaggagg cattctatag cctttaaaaa ttttatctga
     3481 aatatatcct gcaagtaaag tagaaggtat agcagcctat tcaaaaagcc aaaaggcaat
     3541 acccatttgt tctttattaa agccttttgt ttctagcaag taaataggaa gccaagaaat
     3601 aagcctaaaa cgcaccatat aaacaaaagt atccatccaa gccacatact aagcattttt
     3661 gtttttaagt acataatgat aaaaaatttc aaaactgctt aaatttggag tttctatagc
     3721 tttgatttct tctgttttaa tccctcgcat ttcattgatt tcagtaatat caaccaaacc
     3781 ttcattttta ggacttcctt tgactgcata aagcacataa aggctaataa gcacagcaca
     3841 aaaagcagga acataaaaat gattgatatg ctaatgtgtt tcattaaaat ctgccaagct
     3901 tacgcctaaa aatgctgcta aagcaaatcc agaaagcgac actataggag cgattatacc
     3961 tcctcctaaa ttgtgcgaga tattccaaat agctgtataa attccccgct ctttttagga
     4021 taccagtttg caagagtgat aaaagaagga cctacccccc cccatacctt gaaaaacccc
     4081 aagcgcgata acaaaaccta cataagcgta aaaagaattt gaaaaaccaa gtaaaacatt
     4141 tacaagagca cataaaataa gacctaaagc catgtatttt taggatcagc tttatcacta
     4201 agtacgctca ttgcgccttt gctaattcca taggctataa gcatggaacc tgtgattgtc
     4261 ccgatacctg acttgctaag ttcgagttga tttggtataa atggagttga aagagtgata
     4321 ttgtttcgta caagataata tcccatatat cctataaaaa ctccacttaa actccaagtt
     4381 ctcattttgt aatatctggg taaaatttct tctttaggaa attttatagc ttttactttt
     4441 ggtttaaaaa aatcaaacat gcatgctccg cctccct
//
LOCUS       DBBXRO010000129         4459 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.130, whole genome shotgun sequence.
ACCESSION   DBBXRO010000129 DBBXRO010000000
VERSION     DBBXRO010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4459
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.130"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            10..657
                     /locus_tag="ACJFEZ_001604"
     CDS             10..657
                     /locus_tag="ACJFEZ_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HGG0917696.1"
                     /translation="MKKNFFLCILLGILFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHIADPLLETTQIILAQAHMDEEEYQLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDSFLNDYPYTEYEPLVQTMLTKFN
                     LAVFYLNDTIQDLYERTGHTQSAEIYQERLQESEFYQQSIIKPELPWYRSIFEKF"
     gene            673..3048
                     /gene="lon"
                     /locus_tag="ACJFEZ_001605"
     CDS             673..3048
                     /gene="lon"
                     /locus_tag="ACJFEZ_001605"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HGG0917697.1"
                     /translation="MQIEEMQNYPSNLPILVEDELFLYPFMITPIFISDSANMKALDL
                     AIKNDSMLFVAPSKLENGRSFDEIYDCGVVGTIMRKVPLPDGRVKILFQGYAKARIIK
                     PLSSKPLEAKIELIKEEFLEGTKKEALLDVLKEKVRALANISHYFSPDLLRTIDEGLD
                     ASRICDLILNTVRIKKQEAYQFFILTDLEEKLLKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDNQKEDEVRDYYKKLESKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKIAKKKLDIKEVAKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRGVADKDGAKVILCLYGPPGVGKTSLANSVAKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVVVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNLDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPNEKF
                     HITKKYLIPDELKKHGLKSSELDINDETIELIISEYTRESGVRNLRRKIAELCRKSAK
                     KLLLENIKKVSINVKNLNEFLDKKVFEIEKHDGENRIGQVNGLAWTSVGGDVLKVEAI
                     KIKGKGELTLTGSLGDVMKESARIAFSVIKVLIDEGKIKIPKKMILDPKTNVYDSYNL
                     HIHVPDGATPKDGPSAGITMSTAIASVFSDKKVRSDVAMTGEIDLAGNVLPIGGLKEK
                     LIAAYKADIKIALIPKKNYERDLKDIPDEVKDNMKIIGVKDFDEVLKYALV"
     gene            complement(3104..3364)
                     /gene="rpsR"
                     /locus_tag="ACJFEZ_001606"
     CDS             complement(3104..3364)
                     /gene="rpsR"
                     /locus_tag="ACJFEZ_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HGG0917698.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVVNNPFEGL"
     gene            complement(3375..3923)
                     /locus_tag="ACJFEZ_001607"
     CDS             complement(3375..3923)
                     /locus_tag="ACJFEZ_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HGG0917699.1"
                     /translation="MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERR
                     EETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRFEQWNDQNGQMRSKHSVQVENME
                     MLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
                     NQEKIKEIDVDAYDSDDTDLPF"
     gene            complement(3932..4309)
                     /gene="rpsF"
                     /locus_tag="ACJFEZ_001608"
     CDS             complement(3932..4309)
                     /gene="rpsF"
                     /locus_tag="ACJFEZ_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HGG0917700.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLVKNGAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERILRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
BASE COUNT         1534 a          618 c          798 g         1509 t
ORIGIN      
        1 taaaaattaa tgaaaaaaaa tttctttcta tgtattttat tggggatttt attcagtgct
       61 tgcagtacaa aaaatgatga aggattgtat aatttaagtg caagtgaatg gtataaacaa
      121 atcattaaag atttgcaaga taaagatttg gaaaaagctg atgatcatta taatggtatg
      181 gcaagtgagc atatagcaga tccgctttta gaaacaacac aaattatctt agcacaagca
      241 catatggatg aagaagaata tcaattagcg gagttttatt tagatgagta taataaaaaa
      301 tttggaaatt cacgcaatgc agattatatt cgctatctta aaatcaaagc taaatttgat
      361 gcctttgccg tgccaaatcg taaccaagct ttaatgcttg aaagccaaaa agaaatagat
      421 agttttttaa atgattatcc ttatacagaa tacgaacctt tagtacagac tatgttaact
      481 aaatttaatt tagctgtatt ttatttaaat gatacaatac aggatttata tgagcgtaca
      541 ggtcatactc aaagtgctga aatttaccaa gaaagattgc aagaaagtga gttttatcaa
      601 caaagcatta tcaagccaga acttccttgg tatagaagta tatttgaaaa attttagatt
      661 taagggaaac tgatgcaaat tgaagaaatg caaaattatc caagtaattt acctatttta
      721 gtagaagatg aattattttt atatccattt atgattactc caatttttat tagcgattca
      781 gcaaatatga aagctttgga tttagctatt aaaaatgatt caatgctttt tgtagcccct
      841 tcaaagctcg aaaatggaag atcttttgat gaaatttatg attgtggggt agttggaacg
      901 attatgagaa aagttccctt gcctgatggt agagtaaaaa tactttttca aggttatgct
      961 aaggctagga ttataaaacc actttcgagc aagcccttag aggctaaaat agagctaatt
     1021 aaagaagagt ttttagaggg cacaaaaaaa gaagctttac tggatgtttt aaaagaaaaa
     1081 gttagagctt tggcaaatat tagccattat ttttcacctg atttgctccg aactatagat
     1141 gagggtttag atgcttctag aatttgtgat ttgattttaa atactgttcg tataaaaaag
     1201 caagaagctt atcaattttt tatcttaacc gatctagaag aaaagctttt aaaattaata
     1261 gacttgatag cccaagagat agaagccaat aaaattcaaa aggaaattaa aaacaaagtt
     1321 cattctcgta ttgataaagt caataaagaa tattttttaa aagagcaact tagacaaatt
     1381 caaaaagaat taggtagtga caatcaaaaa gaagacgaag ttagagatta ttataaaaaa
     1441 ttagaaagca aaaagaaatt tatgcacgag gatgcttata aggaaattaa aaagcaaatt
     1501 gaaaaatttg aacgtataca tcaggataat tctgaagctt ctatgataca aacttatatt
     1561 gaaaccgctt tggatgtgcc ttttgagaaa atagcaaaga aaaaacttga tatcaaagaa
     1621 gtggctaagc agttaaatca tgatcattat gctcttaata aaccaaaaga gcgcattgaa
     1681 gagtattttg ctgttcgtga gcttttagaa aaacgcggtg tagcagataa agatggggct
     1741 aaggttatac tttgtcttta tgggcctcca ggagttggaa aaacttcact ggctaattct
     1801 gtcgctaagg ccttaaaaag agaacttatt cgtatagctt tagggggctt agaagatgtg
     1861 aatgaattgc gcggacaccg ccgtacctat ataggtgcga tgccagggcg cattactcag
     1921 ggtttaattg aagcaaaaca aatcaatcct gtagttgtgc ttgatgaaat tgataagtta
     1981 aacagaagct ttagaggtga tcctagcgca gttcttttag aaattttaga tccggagcaa
     2041 aattctaaat ttagggatta ttatttaaat tttaatcttg atttaagcaa ggtgattttt
     2101 atagcaacag ctaatgatat aagcaatata cctgctcctt taagagatag gatggaattt
     2161 atagagttaa gctcttacac tccaaatgaa aaatttcaca ttactaaaaa atatttaatt
     2221 cctgatgaac ttaaaaaaca tggattaaaa tctagtgaat tagatattaa tgatgagact
     2281 atagagctta tcataagcga atacactaga gaatcagggg taagaaatct acgcagaaag
     2341 atagctgaac tgtgccgtaa aagtgctaaa aaattacttt tagaaaatat caaaaaagta
     2401 agtatcaatg ttaaaaattt aaatgaattt ttagataaaa aagtttttga gatagaaaag
     2461 catgatggag aaaaccgcat aggacaagtc aatggcttag catggaccag tgtgggtgga
     2521 gatgttttaa aggttgaagc gattaagatc aaaggcaagg gagagttaac tcttactgga
     2581 agtttgggtg atgtgatgaa agaatctgct agaattgctt ttagtgtgat taaggtttta
     2641 atcgatgaag ggaagattaa aattcctaaa aagatgattc ttgatcctaa aactaatgtt
     2701 tatgatagtt ataatttgca catccatgta cccgatggtg caactccaaa agatggacca
     2761 agtgctggaa ttacgatgag tacagctatt gcttcagttt ttagtgataa aaaagttcgt
     2821 tctgatgtag caatgacagg agaaatagat ttggcgggta atgtattgcc tataggaggg
     2881 ctcaaagaaa agcttatcgc agcatataag gctgatatta aaatagcttt gattccaaag
     2941 aaaaattacg aaagagattt aaaagatatt cctgatgagg ttaaagataa tatgaaaata
     3001 attggagtta aagattttga tgaggtttta aaatacgctt tggtttaaaa tctagagcga
     3061 ggggagaaaa aggcaaaata ttgattttgc cttttttaat aacttatagt ccttcgaaag
     3121 gattgttaac tacttctttt ctatctacta tataaggaat aagagctaca tgtctagcgc
     3181 gtttgatagc aacttctacc atttcttggt attttttgct tgtccctgtt aagcggcggg
     3241 gcatgatttt aaatctttct gataaagcat gttttaacat agctgtatct ttataatcaa
     3301 taaattcaac ttttgcttct gtgtatttgc aatatttgcg agagtatttt cttttttctg
     3361 ccatagttta tcctttaaaa tggtaaatcg gtgtcatcgc tatcataagc atcaacatca
     3421 atttctttaa ttttttcttg gttttggtta ggattttgtg tttttgtttg tgcttgctgt
     3481 ggagcttttt tgaaattatt ttcactcata taaggatcgt aactttggtt ttcataattt
     3541 gaataattat tattagctcc ataattattt ccaccattgt taaaatttcc accttgttga
     3601 ggattgtttc ctagcatttc catgttttca acttgaacgc tgtgcttaga gcgcatttgt
     3661 ccattttgat cattccattg ttcaaatctt aaacgacctt ctataaggac tttagaaccc
     3721 ttagagagat attggtttgc tacttcagca gtacgaccat aaaagctaat atcgataaag
     3781 caagtttctt ctcgtctttc tccatttgtg gtaaaccttc ttgttaccgc gatagccgaa
     3841 gctccgatag cgtttccatt ttgaccataa cgcatttcta tatcgcgtgt tagattacct
     3901 accaaaacaa ctttattaaa catttttttc cttattgaat ttcaggcgcg tctaaaggtt
     3961 tgatctcttt tttagactgt ttgatgccat ggcttagttt ttcccaagct gcaatttctt
     4021 ttttattttc atattttaca atcaaaaatc ttattacttc ctctgtaatt cttaaaattc
     4081 tttcaagctc tgcaattaag tttgtaggag ctttgaaata aattacaaaa taagttcctc
     4141 tttcgtattt tttgatttta tacgctaatt ttctagtgcc cattggaaca acggtttcaa
     4201 tttctgcacc attttttaca aggacttctt ttacgaattc caactttgca ttcacttcct
     4261 cttcggtaag cgttggtttt aaaataaata aaacctcata atgtttcata tattctcctt
     4321 ttggatgtta agcctatgtg tttcacaggc aaggattttg caaagttttt acaatgcaaa
     4381 gcttaattat atcaaaatat acttaatctt tacttttcgg gcgtcaatag agaatgttta
     4441 atttagcttt atgttgatt
//
LOCUS       DBBXRO010000130         4428 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.131, whole genome shotgun sequence.
ACCESSION   DBBXRO010000130 DBBXRO010000000
VERSION     DBBXRO010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4428
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.131"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..3152)
                     /locus_tag="ACJFEZ_001609"
     CDS             complement(<1..3152)
                     /locus_tag="ACJFEZ_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HGG0917701.1"
                     /translation="MKFEAIDEKEFLNPYYRKKPILEAELNEFIKALKDYKTSLENNL
                     KNNEDSLVANALSKFFENLHFECEIKSIHKGNSGMDLALKKDKQIQVIVEAKLPHSKE
                     FFSQSKPNCKALHECILYYLRERKALNSSLKHIIITDFYRFYIFKADLFEELFNKNKY
                     FKEAFENFESKNSLFKGNTDEFYKECEKLLSSEKYLDSITRKDLFDEPSLKGVFIDIK
                     PILEQEKPSFSKLKPLFKIFHKDFLLSEFNPNDANSLNNAFYKELLYILGLYESKQNS
                     KLIIAKSEESKEEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFN
                     DDKNLKFLNFKKIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENT
                     LEISSLSNDLKLFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILS
                     QKELISSSVLGNVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKD
                     ISELRKSLRKEDKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFY
                     LEVQNDEILITGRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNS
                     CEITKLRLWIELLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLSHY
                     PNIKERMSKYKRIVKDYKEGFYTDKNLIAKEIKNLQESFKNFCLKDKFNKEIKQLTNG
                     ANEYSKKYGDFLADEHHDEKFKSFFSKNMFEFSFDEKVAIKEFANLKKEYDNIFNLES
                     NHPFEWRFEFPEILDDDGNFKGFDLIIGNPPYIKEAENKELFTNTKKLRTYQGKMDIW
                     YHFVGRGFDILKNNGYLAFIATNNWVTNSGAKKLRNIVLEESQILSLVDFSSFMVFDS
                     ASIQTMIMSFQKTKPPKNYEFHFAKITTQTPIYEDALSLLKNEKTQNNEILSINLTPK
                     KFIDKTLNFTKSDYEELFNKIQKYGKFYLEEREVAQGIVYPQENINKKSLEILGNNFY
                     LGQGIQKLTNEEVENLNLLK"
     gene            3256..4353
                     /locus_tag="ACJFEZ_001610"
     CDS             3256..4353
                     /locus_tag="ACJFEZ_001610"
                     /inference="COORDINATES: protein motif:HMM:NF015210.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HGG0917702.1"
                     /translation="METQDSIKNFQESLYEGLEEQDDKENEIYPIKDIKIEKKSFSVY
                     EANRRIIKNDFILTPEFQRDQRWNNKQKSELIESILMGIPIPVIYAYQTGDGRLEIAD
                     GKQRLGCLNEFLEGKLILKGLKILTDCNGKKFEQLQAQEKTRIEDYQIDMYIISPQTP
                     EKIKYDIFDRVNRGGTKINNQEMRNALYNGTCTKIINKMSDYEAFKEATGNPNSKNMK
                     DRYLNLRFLSLYLCITKKIDIELFTPMDDFLAKAMRTINKKAEQDFESFLQNYEEIMK
                     FIAINYKDNLFRFKTKDIHKTNKRQLSMALFEALTSAFMYAKENNKPYPLKEQIDIFK
                     QELDKPEKITYGIDSKENIEFRINKALELIK"
BASE COUNT         1520 a          659 c          642 g         1607 t
ORIGIN      
        1 ttttttaaaa gatttaaatt ttctacttct tcatttgtta atttttgaat tccctgtcct
       61 aaataaaaat tatttcctaa aatttctaaa gattttttat ttatattttc ttgaggataa
      121 actattcctt gcgccacttc cctttcttca agataaaatt tcccatattt ttgaatttta
      181 ttgaaaagtt cttcataatc actttttgta aaatttaaag ttttatctat gaattttttt
      241 ggagttaaat ttatgcttaa aatttcattg ttttgggttt tttcattttt taaaagactt
      301 agagcatctt cataaattgg agtttgggtt gtgattttag caaaatgaaa ttcataattt
      361 ttaggcggtt ttgttttttg aaaactcata atcatcgttt gtatacttgc agaatcaaac
      421 accataaaag aactaaaatc aacaaggctt aaaatttggg attcttctaa aactatattg
      481 cgtagttttt tagctcctga atttgtaacc caattatttg tagcgataaa tgctaaatat
      541 ccattattct taagtatatc aaatccacgc cctacaaaat gataccaaat atccattttt
      601 ccttgataag ttcttaactt ttttgtattg gtaaaaagtt ctttattttc agcttctttt
      661 atataaggtg gattaccgat gattagatca aagcctttga aatttccatc atcgtccaaa
      721 atttcaggga attcaaaacg ccattcaaaa ggatgattgc tttctaggtt aaagatattg
      781 tcgtattctt ttttaagatt tgcaaattct tttatggcta ctttttcatc aaaactgaat
      841 tcaaacatat ttttagaaaa aaagctttta aatttttcat cgtgatgttc atcggctaaa
      901 aaatcgccgt attttttaga atactcgttt gccccatttg tgagctgttt gatctctttg
      961 ttaaatttat ctttcaaaca aaaattttta aagctttctt ggagattttt tatttccttg
     1021 gcaatgagat ttttatctgt gtaaaagcct tctttatagt cttttactat gcgtttgtat
     1081 ttgctcatac gttctttgat gttagggtag tggcttagac ttttgcctgt ttcaaagtaa
     1141 gataccaaag aatttccgca ttttatgttt atatcgatgt ttggcagggt tttaagatcg
     1201 tgataattct catcatcaaa gctttgataa aaactatgtt ttaaaagctc tatccaaagc
     1261 cttagcttgg tgatctcgca tgagttaggg ttgatatcga cgccaaaaag gttgttttct
     1321 atgatgtctt ttttggtgtg aaaaagttct tgctggataa gatgggcttt atctttaggc
     1381 gtgcttgggc gtttatactc tataaactcg ccttttctac ccgtgatgag aatttcatcg
     1441 ttttgcactt ctaggtaaaa ctcctcatca aaaagattta gctcatcata aatgcttaac
     1501 ataacattta aagcagaaac caaaaaatgc ccgcttccca ccgcaggatc gcaaattttt
     1561 atagagttta aaagctcttt ttgtgctttt ttgtcttctt ttcttaaaga ctttcttagt
     1621 tcgcttatat ctttagcatc aagatcaaat tgagcgttga atttatcaag cacaactttt
     1681 gtgatgcttt ctttacacat ataagaagtg ataaagcttg gcgtgtaaaa acttccttct
     1741 ttgtagccat tgagtttttc aaacacattt cctaaaacac ttgaacttat gagttctttt
     1801 tggcttaaaa tttcgctttg ctcatcatcg ctaccaaaat caaaactatc caaaaattca
     1861 aacaagtatt ctaaaagccc cacttgtcct tttttagcct tgcatttatc atcttttagc
     1921 acggtgtttt tatagtaaaa aagctttaag tcattgctta agcttgaaat ttcaagtgtg
     1981 ttttctatgc tttgtttttc aaacaaagaa gaatttagat aaggcagata agcaaattcg
     2041 cttttctttc tcgtactttt ttctttggct aaaacttcaa agaaaagttc gctaagcttg
     2101 tcaaaatcag ggattttttt gaaatttaaa aatttcaaat ttttatcatc gttaaaacgc
     2161 accaaatttg actctataag ctttaaaaac aaaatgcgat taagccataa gatcaaaagt
     2221 tttaagatgg tttcaaaatt ttcttcttta agcttagaat ttatagcggt gtagaaagtg
     2281 ccttgctctt ctttactttc ttcacttttt gcgatgatga gctttgagtt ttgtttgctc
     2341 tcataaagcc ctaagatata taaaagctct ttgtaaaaag cattgttgag tgaatttgca
     2401 tcgttggggt taaactcgct taacaaaaag tctttgtgaa aaattttaaa caaaggcttg
     2461 agcttgctaa agcttggctt ttcttgctct aaaataggct ttatatcgat aaaaacaccc
     2521 tttaagctag gctcatcaaa taaatccttt cttgtgatag aatcaaggta tttttcactg
     2581 cttaaaagct tttcgcactc tttgtaaaat tcatcggtat tgcccttaaa aagagaattt
     2641 ttgctttcaa aattttcaaa agcttcttta aaatacttgt ttttgttaaa aagctcttca
     2701 aacaaatccg ccttaaagat ataaaaacga taaaaatccg tgatgatgat gtgcttgagt
     2761 gatgaattta aagcctttct ttcacgaaga taatacaaaa tgcactcgtg caaagccttg
     2821 cagttgggct tgctttgact aaagaattct ttagaatggg gcaattttgc ttcgacgatg
     2881 acttgaattt gcttgtcttt tttcaaagca agatccatac cactgttgcc tttatgtatg
     2941 ctttttatct cacactcaaa atgcaaattt tcaaaaaatt tgcttaaagc gtttgctact
     3001 agggagtctt cgttgttttt gagattgttt tctaagcttg ttttataatc tttcaaagct
     3061 ttaataaatt cgtttaactc tgcttctaaa atcggctttt tgcggtagta aggatttaaa
     3121 aattcttttt catctatggc ttcaaatttc atcttgcacc tttttttaaa atagtttcta
     3181 ttttatcaaa atttatttta aagaatcaaa attcgatatt tagtgttata attacaaata
     3241 ccaaggagca aaagtatgga aactcaagat tcaataaaaa attttcaaga aagcttgtat
     3301 gaaggtttag aagaacaaga tgataaagaa aatgaaattt atcccataaa agatatcaaa
     3361 attgagaaaa aaagtttcag tgtttatgaa gcaaatcgca gaataattaa aaacgatttt
     3421 attttaacac cggaatttca aagagatcaa agatggaata ataaacaaaa atcggagctt
     3481 atagaatcta tattaatggg aattcctatc cctgtaatat atgcctatca aacaggagat
     3541 ggaagattag aaatagcaga cggcaaacaa agactcggat gcttaaatga gtttttggaa
     3601 ggtaaattaa tcttaaaagg attaaaaata ttaacagatt gtaatggtaa aaaatttgaa
     3661 caattacaag cacaagaaaa aaccagaata gaagactatc aaatagatat gtatataata
     3721 tctccacaaa ctcctgaaaa aattaaatac gatattttcg atagagtaaa tcgtggtgga
     3781 acaaaaatca ataatcaaga aatgcgtaat gcgctataca acggaacttg tacaaaaatt
     3841 atcaataaaa tgagtgatta tgaagcattt aaagaagcaa caggaaatcc aaatagtaaa
     3901 aacatgaaag atagatattt aaatttaaga tttctctcct tatatctttg cataacaaaa
     3961 aaaatagata tagaattgtt tactcctatg gatgattttt tagcaaaggc catgagaacc
     4021 attaataaaa aggcggaaca agattttgaa tcttttttgc aaaattatga agagataatg
     4081 aaatttattg ccattaatta caaagataac ttatttagat ttaagaccaa agatatccat
     4141 aaaacaaata aaagacaatt aagtatggca ttgtttgaag ccttaacttc tgcatttatg
     4201 tatgcaaaag aaaacaataa accttatcct ttaaaagaac aaatagatat atttaaacaa
     4261 gaacttgata agcctgaaaa aataacctat ggtatcgata gcaaagaaaa tatcgaattt
     4321 agaatcaata aagcattgga acttatcaaa tgatacacaa attacacata aaaaacttta
     4381 aattaattaa agataatagt tttgatttta aaccattaac tataatca
//
LOCUS       DBBXRO010000131         4415 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.132, whole genome shotgun sequence.
ACCESSION   DBBXRO010000131 DBBXRO010000000
VERSION     DBBXRO010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4415
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.132"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            24..608
                     /locus_tag="ACJFEZ_001611"
     CDS             24..608
                     /locus_tag="ACJFEZ_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HGG0917703.1"
                     /translation="MQTIDQIFQAQIEIKKSTFLSYLCPFKDFKNLLVNLKKEHPKAV
                     HFVYAYRTLNEYNQIIEDKSDDGEPKGTSGIPSLNVLRGYDLVNTAVITVRYFGGTKL
                     GTGGLVRAYSDAANAAINNASLLTFEFKKNIKIAIDFKNLNRFEHFLRTHSLEFERDF
                     KNEKVILSLNLNEEEEQKFEIFCAQFTPFEIEKL"
     gene            complement(640..1017)
                     /locus_tag="ACJFEZ_001612"
     CDS             complement(640..1017)
                     /locus_tag="ACJFEZ_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917704.1"
                     /translation="MQVSYKTISSYEYDAISGQYKQVDKQVEDYSSTSDSDFMDILSK
                     LEENSGISSTEENLQNNTQSSNSNSSQYAQMSSMYAYRFRQNEGELSLKAQSASVHND
                     LLNQNANGQNKDSSLLGDLLNAI"
     gene            complement(1068..1403)
                     /locus_tag="ACJFEZ_001613"
     CDS             complement(1068..1403)
                     /locus_tag="ACJFEZ_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917705.1"
                     /translation="MMAKFRIQYSAGFGHFTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYNTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKIRDENCKRAKEEFIRDNELD
                     VEHLPTHGD"
     gene            complement(1393..2970)
                     /locus_tag="ACJFEZ_001614"
     CDS             complement(1393..2970)
                     /locus_tag="ACJFEZ_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HGG0917706.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYDALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLELKGISKAYDKELFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIANAIAPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVALCISHDRELVSAFANRIWHLKDGE
                     LTDFRGTYQEFLGENDG"
     gene            complement(3100..3516)
                     /locus_tag="ACJFEZ_001615"
     CDS             complement(3100..3516)
                     /locus_tag="ACJFEZ_001615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917707.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEINSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            complement(3529..4160)
                     /locus_tag="ACJFEZ_001616"
                     /pseudo
     CDS             complement(3529..4160)
                     /locus_tag="ACJFEZ_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
     gene            complement(4169..>4415)
                     /locus_tag="ACJFEZ_001617"
     CDS             complement(4169..>4415)
                     /locus_tag="ACJFEZ_001617"
                     /inference="COORDINATES: protein motif:HMM:NF025731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HGG0917708.1"
                     /translation="LFKENYMEGASGGSIFVTILLFVLYMLPAIIGLSRKYSNWLIIS
                     LLNLFFGWTIIVWLVCLIWSFTGSFKQTIIIKEKNEK"
BASE COUNT         1454 a          870 c          536 g         1555 t
ORIGIN      
        1 taataccaaa taaaaaggcg aaaatgcaaa caattgatca aatttttcaa gcacaaattg
       61 aaattaaaaa atctactttt ttatcctatc tttgcccttt taaagatttt aaaaatttgc
      121 ttgtaaattt aaaaaaagaa caccccaaag ccgttcattt tgtttatgct tatcgaactt
      181 taaatgaata caatcaaatc atagaagata aaagtgatga tggcgagcct aagggcactt
      241 caggcatacc ttctttaaat gttttaagag ggtatgatct tgtcaacact gcagtcatca
      301 ctgtaagata ttttggtggc accaaacttg ggacaggagg acttgtaaga gcttatagtg
      361 acgcggcaaa tgcagcgatt aacaatgcct ccttgctaac ttttgaattt aaaaaaaata
      421 tcaaaattgc catagatttt aaaaatctca atcgcttcga acatttttta agaactcact
      481 ctttggaatt tgagcgagac tttaaaaatg aaaaagtgat tttaagctta aatttaaacg
      541 aagaggaaga gcaaaagttt gaaatctttt gcgcccaatt tacacctttt gaaatagaga
      601 aattataatc tatcttaaag cctcgtttga ggctttaatt taaatcgcgt taagtaaatc
      661 acctaaaaga ctactgtctt tattttgtcc atttgcattt tgatttaaaa gatcattatg
      721 cacactcgca ctttgagctt ttaaagaaag ttcgccctcg ttttgcctaa aacgataagc
      781 atacatgctt gacatttgtg cgtattgaga ggaattagaa tttgaacttt gggtattgtt
      841 ttgtaaattt tcttccgtac tagaaatacc cgaattttcc tctaatttac ttaatatatc
      901 cataaaatca gaatcagaag tcgaagaata atcttctact tgcttatcca cctgcttata
      961 ctgaccacta atcgcatcat attcatatga gctaatagtt ttataactta cttgcatagc
     1021 tttctccttt caaaatatgc aaaaactata caagcaaaaa gtgttcctta atcaccatga
     1081 gttggtaaat gctccacatc aagttcatta tctcttataa attcttcttt tgctctcttg
     1141 caattttcat cgcgtatttt acgatattca ttgcgtatgg tgatttcttt gtcgcttaaa
     1201 ggtctatctt ctaaaaaact gatatgaaaa taagtatcat cgctttttga ataagtattg
     1261 taaaaatcta tataatcaaa ataatcctta ccattgtcaa attccactac ttcttctata
     1321 taaatagtag gtccaaagcc tttatgattt tgggtaaaat gtccaaagcc tgcgctatac
     1381 tgaattctaa atttagccat cattttctcc taaaaattct tggtaagttc cacgaaaatc
     1441 agtcagttct ccatctttta agtgccaaat acgattagca aaagcagaaa ccagctccct
     1501 atcgtgactt atacaaagtg caacaccctt gaaattatat aaagcttcac caagggctat
     1561 gatactctca agatccaaat ggttatcagg ctcatccaaa agtaaaaaat ttgggcgctc
     1621 tagcatcaaa cgcgaaagca ttaaacgatg tttttcccct ccgcttaagc tcgctgccat
     1681 tttctcttga tcactaccac taaaaagcat tctacctaaa cactttcgaa tttcatccaa
     1741 atctttgaat ttttcactca taagccattc gtaaagtttc aaattttcac aaattaaatt
     1801 acttgtatct tggggaaaat atccaagttc tatagtcgct ccaaggtgta tagaaccgct
     1861 atcaggagca atagcattgg caatgatttt agccaaagtt gacttgccta caccatttgc
     1921 accaattaaa gcaattttgt catttttttc gatttttaat tctaaatttg aaaacaattc
     1981 tttatcataa gccttactaa tacccttaag ctctaaaact tcatttccta tttcacgatt
     2041 tgttctaaaa actatacttg gatccctgcg acttgaaatt ttaatctctt caagctccaa
     2101 tttctccaaa gcctttgcac gacttgtagc ttgttttgcc ttagaagcat tcgcactaaa
     2161 acggcggata aaattttcta attcttctct ttcttttaaa gttttatcgc gcttaagttc
     2221 agcttgtttt gccaaaagcg ttgaagccat ataccaatca tcgtaatttc ccgcaaaatc
     2281 acgaatttgt ttaaaatcca catccaaaat tcttgtacaa attttattta aaaaatgcct
     2341 atcatgagaa atcaccacca aggttccctc atgtcttaaa agctcatttt caagccaaga
     2401 aatcgcttct aagtcaaggt tatttgtagg ctcatctaaa aaaagtacat ctgctcctaa
     2461 aaacaatact tgcgcaagca agactttaaa tttgtctgcg ctttgcaagg tgctcatcaa
     2521 agcatcaaaa tctttgattt ttaaagagct taaaattttc tcacaacgcg tttcacaatc
     2581 ataattagga tcctcttcag ccgttattat ctcaagctca cctaaacgct cattgatctc
     2641 atcagtaaat tcttcgctca tataaagttt ttctttttct tttaaagcat catataaacg
     2701 cttatttgcg cacattaccg catctttgat ggtgtagttt tcaaaagcaa attgatcctg
     2761 tcctaaaact gcgattttca agccttcatc aaatactatt tcaccactac ttgactcaat
     2821 ttctcctgaa agaattttca aaaaagtcga ttttcctgca ccattagcac cgataagtcc
     2881 gtatctttgt cctcgaacaa gttttaaatt aacattttca aataaaagct gatttgcaaa
     2941 acgcatagta agatttttta cttcaaccat gattttcctt aaatttttta cttataaaaa
     3001 tttttaagaa attgtatcaa aaaaagactt gaaattaatt gagtataaaa tattagtaag
     3061 tcatgaaatt aattctattg acttacttta ataaaaatat tattggaaat ctccattgat
     3121 ataagttata tctgtaattt tcacttgatt tatgttagaa accttataaa caacactcca
     3181 aagacctttt ctctgttccc cttttaatgc agcattaatc gtagccatac aagaatcaaa
     3241 attaagatca aaatttgaaa tggaattaat ttcgatcata tcagtgtaat ttaccattcc
     3301 atcatgcttg gctatttctt tgaggccttt tgcataatct tcataatcaa tcccttgggc
     3361 tttaagtccg gataattcat aaagattttt aaaaatttca ctaggaattt tttctttaag
     3421 atttgaaaca actgccgtat tatcacattt gtctaatgag ttggcctgaa gcaaggcaaa
     3481 ccccattaag aaaaataaaa ttactttttt aaacatatct aaactcctct aatttttagg
     3541 ttttgctact aaaataccat ttttatattc ttcttctctt acaatctccc ttttttatat
     3601 tctctaaaga ctccattttt aagtccattt ttataatttt cttcgtcttc taaggcgcca
     3661 ttttcatcat aacgcttttg tactccatca aatttacctt tattatcaaa attataatca
     3721 cacattaaag ttccattttc ataatattcc ttgtaattac cttcaaattc tggcatacca
     3781 tcttcattat agccaagtag ttttcccttt gctctcatat ttccattctc ataatagctt
     3841 gcaaaatcac catatccgcg attatcttta aaatgcacct cctcaagtaa ttgcccattt
     3901 ctagaatatt ccctgctaat tccatctttt tttccatttt tataattttc ttcagctctt
     3961 agctgaccat tgtcataaaa agctcttttt aacccatgta ttcttgaatc tttattatag
     4021 ggaatttctt cttttaaatt tccatttgga tatttgtttt gctgaactct agccacatcg
     4081 ctaggttgtc caggaaaatc acttccacaa ccacttaaca acatcgcaat taaactacaa
     4141 atgcttaaaa attttgtcat tttttctcct atttctcatt tttttcttta ataataatag
     4201 tttgcttaaa acttcccgta aaagaccata ttaaacaaac aagccaaaca ataatagtcc
     4261 aaccaaaaaa caaatttagc aaagaaatta tcagccaatt agaatacttt ctgctcaaac
     4321 caataatagc gggcaacatg tataatacaa acaataatat tgttacaaaa atagacccgc
     4381 cacttgcacc ttccatgtaa ttctccttaa ataaa
//
LOCUS       DBBXRO010000132         4412 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.133, whole genome shotgun sequence.
ACCESSION   DBBXRO010000132 DBBXRO010000000
VERSION     DBBXRO010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4412
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.133"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(47..268)
                     /locus_tag="ACJFEZ_001618"
     CDS             complement(47..268)
                     /locus_tag="ACJFEZ_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0917709.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(268..1329)
                     /locus_tag="ACJFEZ_001619"
     CDS             complement(268..1329)
                     /locus_tag="ACJFEZ_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HGG0917710.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGRHFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            complement(1319..2881)
                     /locus_tag="ACJFEZ_001620"
     CDS             complement(1319..2881)
                     /locus_tag="ACJFEZ_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0917711.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFETRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALVSFQ
                     NLNFKGLIIHEN"
     gene            complement(2878..3294)
                     /locus_tag="ACJFEZ_001621"
     CDS             complement(2878..3294)
                     /locus_tag="ACJFEZ_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HGG0917712.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            complement(3287..4180)
                     /locus_tag="ACJFEZ_001622"
     CDS             complement(3287..4180)
                     /locus_tag="ACJFEZ_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0917713.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIEEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLKNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            complement(4177..4407)
                     /locus_tag="ACJFEZ_001623"
     CDS             complement(4177..4407)
                     /locus_tag="ACJFEZ_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0917714.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSALLEKIQTLKAEK"
BASE COUNT         1442 a          710 c          618 g         1642 t
ORIGIN      
        1 ggtgacaaat ttgaattagt gataaaagat taaaacctta aaggttttaa tcaagctttg
       61 ctaaattgat taaatcactt actttttgac aatttttcaa gtcctcggct gtgattttta
      121 aagtaaaaag atttttataa agcaccatca cagatacaaa agccaaacta tcccactcat
      181 ctatatcatc aagtagcata tcctcgttta agtcttcatc tctatgcata gcttctttaa
      241 gctcttctaa aaattcagtt tttgtcatta tttctccttt gtgtaaatta aaatatcttt
      301 tgtgtataaa tctttgaaat tcaacaccgc acttccccag ctaagccctg caccaaaagc
      361 acttaaactc gctttaaatt cttttggagt atctagttcg caaagtagag caggtagtga
      421 acaagcgctt aaattagcgt atttttccat gatgaaatta ggaactttat catcattaag
      481 ttttaattct tctttgatgc aatcaaccaa atacgcattg gattgatgaa aaagatgaaa
      541 agcaatgtct ttttcatcta ctttagaaaa ttctaaaatt tctttaaagc ttttaggttc
      601 gcattctaaa gccatattaa aaatatttgc tccgtccatg taaagatttt ctaattgtct
      661 aaactcctca gtttgcatga gcgaatcatc gttgaaaata tctgctttag gtattctcat
      721 cgcacctttt ggaatgatga gtttatcaaa atgtcttcca tcgcttccaa gctcaaaaaa
      781 agcttcatta aaatccgttt tttcaattaa agttgcactt actccatcgc caaaaatagg
      841 ggctaaattc atatttttag ggtggatgaa tttgcttaaa gtatctccac aaatgagtaa
      901 aattttacct aagccacttt gtattaaaga atgagcgaca aataagccgt ataaataccc
      961 tgcacaagct tgccctaaat caaaagctat ggttttagag cttaaattta aaagctgatg
     1021 taaataacaa gccgtagaag gcatgaaaaa atcaggactt tgagttacta cgatgagtgc
     1081 atcaaggcta tttttatcta tatttaaacc ttgtaaaagt gtattggctg cgtgttttcc
     1141 aagatcgctt acgcaagtgt tttcatcgca aatataacgc gtgtttaaac ctatgacttt
     1201 tttcattctt ttaagggttt taatatcatt tgaaaaaacg ctttctaact catcatcaat
     1261 gcaaatttta tgttcaggta cgcttacgca aatgcctgaa attttagctt tatcaaatct
     1321 agttttcatg gattataagt cctttgaagt ttaaattttg aaatgaaaca agggctgagt
     1381 ttttttcaaa ttctttggaa atttgttcta aaaagctcaa aaatggcata tttctttcgc
     1441 ctttttgata gtaaagcctt gcattattgt ttttaagatc aaagaaatgt aaagctagtt
     1501 caaaggcttt aaaaaacatt ctagtttcaa gttttctacc taaagcccta caagaaatgc
     1561 aaagatcatc gataaataaa tttccttctt tacaagaaaa aacaaaaata gcgataatcc
     1621 cactatcgct taatttatca ctcatactca cacttacaat gagttctttt tgcatgtgtt
     1681 gtgcgacttt ttcttgattt aagcgtgtgt aattagcgat aaattgattg gttttgccta
     1741 aaagttcgct aatgcgaggg atattttgca gatcattttt gctaaaattt aagctgattt
     1801 caagattttg aaaatattct tcatcgctta agcttttaag ctcttctctt aaagcattgg
     1861 ctgctatatc tttggcacga atttgatctt ctttggtatt tgaaagtttt aaaagattag
     1921 gaaaaagttt gattttataa agtatatttt catcgcataa aagtgtttta acgcctgtaa
     1981 atttggtatt ttcaagctcg gcgatattat catctataaa aagcatagcg ttagtattta
     2041 tattaaattt tttagcaatt tttaagatat tttcaccctt tggttcccaa ttgatcattc
     2101 tagcatcaaa atcatcccat tgtaagataa aatctttcct tgtttcaaaa agtttttttg
     2161 cgtctttttc ttcatttttt gaagctaggg caagtaaaaa cccttgtttt ttaaaagttt
     2221 taattttttc ttgtaaggtt ttgtgcaaag gacttaaatt aagattatct ataccctctt
     2281 cacctaaaat tccttgatac aaggtattat caagatcaag tacaagagct ttaagagcgg
     2341 gttttacaag tgcagggatg agactaagtc ctaaaatttg tgccaagaaa atcaaggctt
     2401 tattattaag cttagagcct gtaagttctt ctttagctaa gtctaaaata tcttcttcat
     2461 caaaatactc ttttatgagt ttttctatgt taaaaatttc acaatttaaa atttttttat
     2521 ctgttttaaa ttctcctaaa ctaagaacta aaatagggtt ttgtgaaatt tttcttagtt
     2581 ctaaaagtct ttcttctata aaattttgca cattattttt atagcgggtt aaatctagcc
     2641 ataaaagttc taaactagct tctttaaagt tatcaaaact caagctatca tcataagagc
     2701 tgaaattaaa ctcagctctt aaattagcaa aatgtaaaaa aggagcaatg atactttgca
     2761 ctccttcaaa agcatgattt ctatggacat taataagaag atcttgactt ttgctaaagt
     2821 ctaattcttt ggcgaatttt ataagctcat tgcgttttaa atggggtgaa aaaagattca
     2881 ttttagctcc acaagttcga ttaaaagcct atttggcatc atgataaaac aaagtttagc
     2941 aaaatagctt gcttgcataa taggaacaat acaaatgccc ccttgttgtt ccaaaagaat
     3001 taaatcttgg gcgatatttt tactttcata ggctaaatga tacattttgg tattattttt
     3061 caaatagcta tctagtggtc ctttatcgtt taaattttgc aaaagttcaa atctatactg
     3121 tggaaatgct tcattacaag gaatgataaa ttcgcctctt actccttgtt tttcatctat
     3181 aaattctgat tctttataaa aacctagttt aaaaaaacat tccctttctt tttctaaatt
     3241 tttacaagcc acgcctatat gatgaagggg taaattgagt gttgtattaa gcatttaaaa
     3301 ctactgccat agtgatagca tttttaaatt tcaatgcttt ttccaaacta taatcatttg
     3361 ccataaaaca ttcataagct ttaaatttta agcctgattt ttctatcaaa tctttaactt
     3421 catcaggatg ggaaaataaa taaatatgat caatagcagg agcattgata ggaatagttg
     3481 caaaaatttc ccctccatcg ctaagaagct ctttagatct tttaaggaat tcaagaggtt
     3541 tttctacgtg ttctagcact tctccaatca ctatcaaatc agctttttta tcaaaatcat
     3601 aagtaaaaaa atcttgacat aaaaaatcac attttgtaat caatccccct acttgttgtt
     3661 ttaccatttt ttgagtaagt tcgcaacttg ttggagagat atcaagtcca taaaaggcgg
     3721 aaaatttacc acttttaact gctcttgcaa aatattctcc atggccaggg cctatttcaa
     3781 aataagttgt ttttggagta aaatttttta aatattgtga aaagtacttt ctcactttaa
     3841 tatgagctat ccaaacaaaa gaagaaagag ctaggcctat catgtattgt ttcatatagc
     3901 tttcattaaa ataaacttta tccttaactt catcaaagct agaataacga taagccccat
     3961 tttctatgaa aaattttgtt tcttctaaag tatcgttaag gatcaataaa taacaatcgc
     4021 attgttcttc tatgctgata ccatcttgaa tataataaga aattaattta tcaaattcct
     4081 cttcgtcttc ttgtgaaaat tcaatttttt taagatattt agaatggata ggattttttt
     4141 gagcgatggc ttgaaataat ttttcaatat tttctttcat ttttctgcct ttagggtttg
     4201 aatcttttct agtaaagcgc tttgagattt taagagactt aaatcttctt tgttaaattt
     4261 gatttcaaat tcttcttcta aactcatgat gatatcaata tgagctaaag aagtccagtt
     4321 cttgcagttt tccatgctta aatttgtatt ttcatctact ttggtttcaa gtatattttc
     4381 taaaatttca taaaattgtt tttccattgt at
//
LOCUS       DBBXRO010000133         4358 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.134, whole genome shotgun sequence.
ACCESSION   DBBXRO010000133 DBBXRO010000000
VERSION     DBBXRO010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4358
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.134"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..158)
                     /locus_tag="ACJFEZ_001624"
     CDS             complement(<1..158)
                     /locus_tag="ACJFEZ_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917715.1"
                     /translation="MKKIFLLAFLSLSLNAQSLELDKIRTDLYSKSGANVLKKIEISL
                     EFEGEKIK"
     gene            complement(169..1512)
                     /locus_tag="ACJFEZ_001625"
     CDS             complement(169..1512)
                     /locus_tag="ACJFEZ_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HGG0917716.1"
                     /translation="MLDKLEKFLVYDNVFLSGGAGVGKSFLTNELIRSYKRQGKVVIA
                     LGSSALSAFNIAGATLHSFFCLGYCQDMDTLSVFDRNQKQREKILKLKENLKKIDLII
                     IDEISMVSADIFEMIGFRLKNSQFDGKILVVGDFFQLPPVIKEKKENLFLNSTYAFSS
                     FFWKELKFKNIKLTQPKRTHNLEFYGNLSLIRQGFLDDKILNFFENLCINTKELEELD
                     DDYTLLCSINKKVNAVNDDRLSKLESPLVCFKAEICKESKDIDEHKIQTWIKSLNILD
                     ELKLKIGARVIFCVNNWDKGYYNGEQGIIESITYEEDKTYIGIMKNNGIKIVLEPYVF
                     FMEELEQNNNEMFINVLASVSQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRAINPATLKIYFTKRINFKAYFASILKFDISVREFYQNNDFLDLELENNII"
     gene            1561..2925
                     /locus_tag="ACJFEZ_001626"
     CDS             1561..2925
                     /locus_tag="ACJFEZ_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HGG0917717.1"
                     /translation="MKIWLYPCLTALFFTACSIKETKLSPAPSQTILNFKDQQDSHYA
                     KLEFDQNISILSKMNQNINFDSQKYKQLFFSPWHSSFKTLKNQNLFWSFSLYTNPKNT
                     YYFFNKQVIPLSWFEKTIDNANTKELGKFDKKALVIQNTLIKNIPTQRAILKNPFLEN
                     EGIPFDYASDSILNAGTPILVSHFSKDKRYAFVLSEAGVGFIESKDLEFFSNNRAQIY
                     EKLNFLTPLKEKLAILDEDGNFFFESRIGALYPYYKEDKNYFYGKIGPKKYKISKDNA
                     SNFPLNFNDENLKNQISEVLNLPYGWGGYNFERDCSLLTRDVFSAFGLYLPRNSAAQK
                     NSFTHFDINTLDNSQKKDFLDRFGKAYLNLLYLPGHIMLYAGKISDKNVAVHNIWGLR
                     KDETQRLLISSSVITSLEIGKDEISKENLLLSRLKEVSFIYLSKEEKEQITNYLEKLK
                     NKAD"
     gene            complement(2962..3834)
                     /locus_tag="ACJFEZ_001627"
     CDS             complement(2962..3834)
                     /locus_tag="ACJFEZ_001627"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HGG0917718.1"
                     /translation="MKIALIQQKFHFTKEKTIEKTCEFIEQAAKQGAELVCLGELHQS
                     EYFCQSENVDFFDLANDYEKDVQFWSSIAKKHGVVLLTSLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLVCWDQWYPEAARL
                     MALKGAQILIYPTAIGWFDKDEKEEKQRQLGAWLGVQKGHAIANGLYTIAVNRVGFEE
                     DKSGVEEGIRFWGNSFVFGPQGEEICILDSENECIKLVDIDLQRSENVRRWWPFLRDR
                     RIEYFGDLSKRFID"
     gene            complement(3831..>4358)
                     /locus_tag="ACJFEZ_001628"
     CDS             complement(3831..>4358)
                     /locus_tag="ACJFEZ_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HGG0917719.1"
                     /translation="ILTFLLVLFLNYVVKKTKSLIIESDALHYKTDCLTNAFTLAALV
                     LIYFTNLHIIDAIFGIVVSLYTAFSAFKIIKKALAFLMDEALPKEQVNQICALISSNP
                     EVISYHELKTRKTPNCNYLSVHLVFCPIISLLSAHKVSDEIENGVREMFNGEKWDIQI
                     HLDPYDDEEQERQRQ"
BASE COUNT         1533 a          761 c          550 g         1514 t
ORIGIN      
        1 tcttttattt tctcgccttc aaattctaaa gaaatttcaa tttttttaag tacatttgct
       61 ccgctttttg agtataaatc tgttcttatt ttatcaagct ctaaactttg tgcattaagg
      121 cttaaagata aaaaagcaag taaaaatatt tttttcattc tcatcctttt aaatgatatt
      181 attttccaat tcaagatcta aaaaatcatt attttgataa aattctctca cacttatatc
      241 aaattttaaa atactagcaa aataggcttt aaaatttatt ctttttgtaa aataaatttt
      301 aagagtagca ggatttatag cacgcgataa agccacataa agttgtccgt tttcaaaaat
      361 atgatcaata tcgcatacta atttttctat actcataccc tgtgatttat gtatggtaat
      421 agcataagct agtttgatag gaaattgact tacgcttgca agtacattga taaacatttc
      481 attattattt tgctcaagct cttccataaa aaatacatag ggttcaagca caattttaat
      541 accattgttt ttcatgatac caatataagt cttatcctct tcataagtga tactttcgat
      601 gatgccttgc tcgccattat aatatccctt atcccaatta ttcacacaaa aaataacgcg
      661 tgcgcctatt ttgagtttaa gctcgtctaa aatatttaaa ctttttatcc aagtttgaat
      721 tttgtgctca tctatatctt tagattcttt gcaaatttca gctttaaaac aaacaagcgg
      781 actttcaagc ttgcttaatc tatcatcatt gacagcattt acctttttat ttatactaca
      841 aagcaaggta taatcatcat ctaattcttc taattctttt gtattgatac ataaattttc
      901 aaaaaaattt aaaattttat catctaaaaa tccttgccta atcaaggata aatttccata
      961 aaattctaaa ttatgcgttc tttttggttg agttaatttg atatttttaa attttaattc
     1021 tttccaaaaa aaggaagaaa aagcataggt agaatttaaa aaaagatttt cttttttctc
     1081 tttaatcacg ggcggtaatt gaaaaaaatc acccacaact aaaattttac catcaaattg
     1141 cgaatttttc aatctaaaac ctatcatctc aaaaatatca gcacttacca tagaaatttc
     1201 atcgatgatg attaaatcaa tttttttaag attttctttt aactttaaaa tcttctctct
     1261 ttgtttttga ttgcgatcaa aaacgctaag cgtatccata tcttgacaat aacccaaaca
     1321 aaaaaaacta tgcaaggttg cccctgctat attaaatgct gaaagtgcgc tagaaccaag
     1381 agctataacg accttgcctt gtcttttgta agagcgtatg agttcattgg ttaaaaaact
     1441 tttcccaacg cctgcgccac cacttaaaaa aacattatca tagactaaaa atttctctag
     1501 tttatcaagc attatatttc cttggcttta attataacta ctttttgtaa aaggttgatt
     1561 atgaaaattt ggctatatcc ttgtcttaca gcactatttt ttaccgcttg ttctataaaa
     1621 gaaacaaaat taagtccagc cccatctcaa actattttaa attttaaaga tcagcaagac
     1681 tcacactatg caaaactcga atttgatcaa aatatcagca ttttatccaa aatgaatcaa
     1741 aatataaatt ttgattctca aaaatacaaa caactttttt ttagcccatg gcacagctct
     1801 tttaaaactt taaaaaatca aaatcttttt tggtcatttt ctttatatac aaatcctaaa
     1861 aatacttatt atttctttaa caagcaagta attcctttat catggtttga aaaaactata
     1921 gataatgcaa acactaaaga gctaggcaag tttgataaaa aagctttagt aatacaaaac
     1981 acccttatta aaaatatccc tacgcaaaga gcgattttaa aaaatccttt tcttgaaaat
     2041 gaaggaattc cttttgatta tgcaagcgat agtattttaa atgcgggtac tcctatttta
     2101 gtttcgcatt ttagcaagga taagcgttat gcttttgtat taagcgaagc aggggtgggt
     2161 tttatagaaa gcaaagattt ggaatttttc tctaacaata gagcgcaaat ttatgaaaag
     2221 cttaactttc ttacacccct aaaagaaaaa ctagctattt tagatgagga tggaaatttt
     2281 ttctttgaaa gcagaatcgg agcgctttat ccttattata aggaagataa gaattatttt
     2341 tacggaaaaa taggccctaa aaaatacaag atatctaaag ataatgcaag taattttcct
     2401 ctaaacttca atgatgaaaa tttaaaaaat caaatttctg aagttttaaa tttgccttat
     2461 ggctggggcg gttataattt tgaaagagat tgctctttac ttactcgtga tgtcttttca
     2521 gcttttgggc tttatttgcc aagaaattca gctgcgcaaa aaaattcttt tacgcatttt
     2581 gatataaaca ctcttgataa ttctcaaaaa aaagatttct tagatcgttt tggaaaagct
     2641 tatttaaatt tactctattt gcctggtcac ataatgcttt atgcaggaaa aatttcagat
     2701 aaaaatgtcg ctgtgcacaa tatatgggga ttaagaaaag acgaaaccca aagactgctt
     2761 ataagctcga gcgttattac tagcttagaa attggaaaag atgaaatttc aaaagaaaat
     2821 ttattgcttt caagacttaa agaggtaagt tttatttatt tgagtaaaga agaaaaagaa
     2881 caaattacaa attatttaga aaagctaaaa aacaaagcgg actaatttta aaaagccctt
     2941 attaaagagc tttttaaatt tttaatcaat aaatcttttc gataaatcac caaaatactc
     3001 tatgcgtcta tcgcgtaaaa aaggccacca acgacgcaca ttttcacttc tttgtaagtc
     3061 aatatcgaca agctttatgc attcattttc actatctaaa atacaaattt cttcaccttg
     3121 tggtccaaaa acaaaagaat ttccccaaaa tcttatcccc tcttctacac cacttttatc
     3181 ctcttcaaaa cccactctat tgactgctat agtatataaa ccattagcaa tagcatgtcc
     3241 tttttgaacc cctagccaag cgccaagttg cctttgtttt tcttcttttt catctttgtc
     3301 aaaccaacca atagcagtag gataaatcag aatttgagct ccttttaaag ccataagtct
     3361 agctgcttca ggataccact gatcccaaca aacaagcact ccaagctttc ctaaacttgt
     3421 atttataggc tcaaaaccca aatcacctgg ggtaaaatag aatttttcat aaaaacaagg
     3481 atcatcaggt atatgcatct tgcgatattt tcctgctata cttccgtctt tttcaaaaac
     3541 tacagcagta ttatgataaa gccccgcgct tcttttttca aaaagtgaag taagtaaaac
     3601 tacaccgtgc ttctttgcta tactcgacca aaactgcaca tctttttcat aatcatttgc
     3661 caaatcaaaa aaatctacat tttcactttg gcaaaaatac tcgctttgat gaagctctcc
     3721 taagcaaaca agctcggctc cttgcttggc ggcttgttcg ataaattcgc aagttttttc
     3781 tatggttttt tctttagtaa aatgaaattt ttgttgaatt agtgcaattt tcattgtctt
     3841 tgcctttctt gttcttcatc atcataagga tctaggtgaa tttgtatatc ccatttttcc
     3901 ccattaaaca tttcacgcac accattttct atctcatctg aaactttatg tgcgcttaaa
     3961 agcgaaatta taggacaaaa caccaaatga acgcttaaat aattgcaatt tggagtttta
     4021 cgcgttttta actcatgata agaaatcact tcaggattac tagatattaa agcgcaaatt
     4081 tgattaacct gctccttagg caaagcctca tccattaaaa aagctaaagc ttttttgata
     4141 attttaaaag cagaaaatgc agtataaaga ctcacgacta tgccaaaaat cgcatcaata
     4201 atatgcaaat ttgtaaaata aatcaaaacc aaagctgcta aagtaaaagc attagtcaag
     4261 caatctgttt tataatgtaa agcatcgctt tctataatta agcttttagt ttttttaacc
     4321 acataattta aaaaaagtac aagtagaaaa gtaagtat
//
LOCUS       DBBXRO010000134         4224 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.135, whole genome shotgun sequence.
ACCESSION   DBBXRO010000134 DBBXRO010000000
VERSION     DBBXRO010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4224
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.135"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..328
                     /locus_tag="ACJFEZ_001629"
     CDS             <1..328
                     /locus_tag="ACJFEZ_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917720.1"
                     /translation="KIFLKFIGIFLLCTLALFLPFINLFVYYLAFYYLFHKLLMLDIT
                     SSVLDKENFKIFNAQASTFEFKFSTLCFYLLSSIPLLGIFLQVFFVIFLTHLAYQRIL
                     KLEVKG"
     gene            complement(311..1276)
                     /gene="tilS"
                     /locus_tag="ACJFEZ_001630"
     CDS             complement(311..1276)
                     /gene="tilS"
                     /locus_tag="ACJFEZ_001630"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HGG0917721.1"
                     /translation="MQIKDEILSLLKKGRNLLAFSYGSDSSALFHFLVQKKIDFDLVM
                     INYKTRKNSDLEEQKAKELALEFHKKIFIKSAPVIKGNFEKEARDFRYDFFEKICLEQ
                     NYSNLILAHHLNDQLEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFMSKDEIL
                     SYLKENDIFYFQDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFFYLDEDRKKLYD
                     LESIKEIQGLMICPKNESLIAKAVKMKGLLLSAAQRKEFLKGDCVLGGKIGIVYKDEK
                     AIVFKYETCQKLPKEFKEACRIAKIPRLLRAYLYNHKIDISSLNF"
     gene            complement(1266..2585)
                     /gene="rimO"
                     /locus_tag="ACJFEZ_001631"
     CDS             complement(1266..2585)
                     /gene="rimO"
                     /locus_tag="ACJFEZ_001631"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HGG0917722.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQGENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIEGI
                     KAARILYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPDSFLRTGFIVGHPGESDADFEEFCEFIKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGKKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEIIQNVDKKLIAKALRKIDAN"
     gene            2659..3756
                     /gene="prfB"
                     /locus_tag="ACJFEZ_001632"
     CDS             2659..3756
                     /gene="prfB"
                     /locus_tag="ACJFEZ_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HGG0917723.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWNDVKQAGIIGKEKTKITNLLKNYENAFNTLNDASELFDLANSENDAETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASMLYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANAGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKSE"
     gene            complement(3840..4112)
                     /locus_tag="ACJFEZ_001633"
     CDS             complement(3840..4112)
                     /locus_tag="ACJFEZ_001633"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917724.1"
                     /translation="MEKGFELIKAKNNNANMDFYSPETLKNFDEKRYKYLKSKDFRLY
                     GSVKGYQYMIFSVNKDKSDKREFWALICEDSKVENCKIENATGRGV"
BASE COUNT         1413 a          804 c          575 g         1432 t
ORIGIN      
        1 caaaatattt ttaaaattta taggaatttt tttactttgc accttggctt tgtttttgcc
       61 ttttatcaat ctttttgtgt attatcttgc tttttattat ctttttcaca agcttttaat
      121 gcttgatata acaagttcgg ttttagataa agaaaatttt aaaattttta acgctcaagc
      181 atctaccttt gaatttaaat tcagcacttt atgtttttac ttactctcat ctatcccgct
      241 tttaggaatt tttttgcaag tattttttgt gattttttta acacatttag cttatcaaag
      301 aattttaaaa ttagaagtta agggatgaaa tatcgatttt gtgattgtat aaataagctc
      361 ttaaaagtct tggtatttta gcgattctgc aagcttcttt aaattctttt ggcaattttt
      421 gacaagtttc atatttaaaa acgatagcct tttcatcctt atacacgatg cctatttttc
      481 cacctaaaac acaatcgccc ttcaaaaact cttttctttg tgctgcgctt aaaagcaaac
      541 ctttcatttt tacagcctta gcaatcaaac tttcattttt aggacaaatc ataagacctt
      601 gaatttcttt tatagactcc aaatcataga gtttttttct atcctcatca agataaaaaa
      661 aacttctttt taaaccttga tgaaatttac tcacaaaggc attggaaaaa ttttttctta
      721 tataatttct aaaatatttt tcattctcat tactctcatc ttgaaaataa aaaatatcat
      781 tctcttttaa ataacttaaa atttcatcct tactcataaa aagcaaaggg cgtaaaagtg
      841 tataatttga gcgcttttca cactcttgca tgcctaaaat ttcagccaaa cccgccccac
      901 gagaaagctg cattaaaaac cactccaatt gatcattgag atgatgagct aagataagat
      961 tgctataatt ttgctcaaga caaatttttt caaagaaatc ataacgaaaa tccctagctt
     1021 ctttttcaaa attccccttt atcacaggag cactttttat aaaaattttt ttatgaaatt
     1081 ccaaggcaag ctccttggct ttttgctctt ctaaatcgct attttttcgt gttttataat
     1141 taatcatcac aagatcaaaa tcaatctttt tttgcactaa aaaatgaaaa agtgcactag
     1201 aatcacttcc ataagaaaaa gcgagtaaat ttctaccctt ttttaacaag gataaaattt
     1261 catctttaat ttgcatctat ttttcttaaa gccttggcta tgagcttttt atcaacattt
     1321 tgaatgattt cgcattcata aatttgtccc atttccaaat tcccgcattc gctttcattg
     1381 ataagaattt ctccatcaat ctctctatcc catcttaaat ctttagctgc gataaaaaac
     1441 tcaccctcgc tactctcacc tgtacaaaca actaagcgct tttttcccac ttctttttca
     1501 aaactttttt ctatgacttc atctacaatt ttttctatga ttttaagcct tttattgatc
     1561 actttaaaag gcacttgctc catatcaaaa gcagctgtat cttcttcttt agaatacgca
     1621 aaaacactca ctctatcaaa accaaaatct ttgataaatt cacaaaactc ctcaaaatcc
     1681 gcatcacttt cacctgggtg ccctacgata aaacccgtac gcaaaaagct atcaggtgca
     1741 cttttcatca aatttaacat ttctttaagt cttgtgctat ttgctccgcg tttcataatc
     1801 ttaagcatat tgtcgctaat gtgttgcaaa ggcatatcaa aataatttac aaaaatttta
     1861 gaagctataa tgcgcttgat caaagcctca ctcgcacttg taggataaag atataaaatt
     1921 ctagccgctt taataccctc gatcttttct acctcatcaa tcaaacgtat aagcccatct
     1981 ttttcaccct tatcaaacaa ataagaactc gtatcttgtg cgataaaaga aaaatcctta
     2041 taacccctag ccaccaaatc tttaagctcg gctataatgc tagaaatttc acgcgatttt
     2101 aacttaccct taaaacttgg gatcgcacaa aaagaacatt tttgattgca accttcagcg
     2161 atttttataa aagcatgcga attagaacct gtgatgatgc gtttggagtt ttcaccctgc
     2221 aaataagtcg aatttgaaaa taaattggtt tttttaagta tcatttcatc gattctttca
     2281 taatcaccca caccagtaaa aagatcaact tcaggaagtt ctttcataag ctcttcgcgg
     2341 taacgctgca tcaaacaacc cgtcacaacc aaaagcgaat ctttttttct ttgctcatgc
     2401 aaatctaaaa tcgcattgat actttctttt tttgcactat ctataaagcc acaggtattt
     2461 acgattaaaa catcagcttt acttggctca tcgcaaagct cataagcgct aagacgccct
     2521 agcataatct cactatcgac taaattttta ttacagccta aagacataag ataaagtttt
     2581 gacatttttt tcctatatta aagttttatt ttgatataat ctttgatttt aaaaatataa
     2641 ttatagcaaa gaaattttat ggataattac gaatttagcg aacttttaaa aactttaaaa
     2701 aacaaagtcg gcaacatagc ctctatcatc aagcctgaaa acatccaaac aaggcttaaa
     2761 gagatcgaag agcttgaaaa ttctccttct ttttggaatg atgtcaagca agcaggaatc
     2821 ataggcaaag aaaaaaccaa gattaccaat ctactaaaaa actacgaaaa tgctttcaat
     2881 actctaaatg acgcaagcga acttttcgat ctagccaaca gcgaaaacga tgcagaaact
     2941 cttgaagctt tatttaatga cgcaccaaaa cttgaagata ccatcacaag tcttgaaatt
     3001 tccatgcttt taagcgggga aaatgatggt aaaaatgcca ttgtttccat tcatccaggt
     3061 gcgggtggaa cggaaagtaa tgactgggca agcatgcttt ataggatgta tttaagattt
     3121 tgcgaaagag aaggttttaa agtcgaaact ctagactttc aagaaggcga agaagcagga
     3181 cttaaagatg tgagcttttt ggttaaaggc gaaaatgctt atggttattt aaaagctgaa
     3241 aatggcattc atcgtttggt aagaacttct ccttttgata gtgcaggacg ccgtcataca
     3301 agcttttcaa gtgttatggt aagccctgaa cttgatgatg atatagaaat tgaaatcgaa
     3361 gaaaaagaca taagaataga ttattacaga gcaagcggtg caggcggaca acatgtcaat
     3421 aaaacagaat cagccgtgag aatcacgcat tttccaaccg gtatagtcgt acaatgtcaa
     3481 aacgatagaa gccaacacaa aaacaaagcc accgctttta aaatgctaaa atcccgcctt
     3541 tatgagcttg aactcatgaa acaacaagat agtgctaatg caggtgaaaa aagtgagata
     3601 ggctgggggc atcaaatccg ctcttatgtg cttttccctt atcagcaagt taaagacaat
     3661 cgcagtggag aagctttttc tcaagtggat aatatccttg atggagatat caaaaaaatg
     3721 atagagggtg ttttgattgc tttaaaatca gagtaacagg cttaaaaata agtaatttcc
     3781 gcaaaatgtc ggtataaaaa gaattagaaa gatagcggga ttttcccgct tgttttattt
     3841 taaactccac gccctgtagc attttctatt ttgcaatttt ccactttgct atcttcgcaa
     3901 attaaagccc aaaattccct tttatcgctc ttatctttat tgacactaaa tatcatatat
     3961 tgataacctt taacactgcc ataaagtcgg aagtcttttg attttaaata tttgtatctt
     4021 ttttcatcga aattttttaa agtttctgga gaataaaaat ccatattagc attattgttt
     4081 tttgctttaa ttaactcaaa acctttttcc acaaaagaat ttaattcgtt tttattaaat
     4141 tttccacaaa acgatcatca ccgccacaac ctataatcaa agtcatagct cctaaagcca
     4201 aagcacttgt taaaattttt tttc
//
LOCUS       DBBXRO010000135         4208 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.136, whole genome shotgun sequence.
ACCESSION   DBBXRO010000135 DBBXRO010000000
VERSION     DBBXRO010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4208
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.136"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            39..971
                     /locus_tag="ACJFEZ_001634"
     CDS             39..971
                     /locus_tag="ACJFEZ_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HGG0917725.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGVLFIVYLLKRSKVHKEGGHFWLLVFRGVTGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFIIFKENIGAKGWLGILIAFSGVLLIAQPWADSSTHSGFDLKNSIIGV
                     MSGFLAALALTSVRELRKFYTTEQIAFSFILLGALMPLISMIGAEFFEPKHLDSLHLD
                     FILAPFVMPSLTAWLIIAVMGALGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMVV
                     GIILGDDLPSAMVFLGIIGIIFGGIILVKNKGKK"
     gene            968..1780
                     /gene="kdsA"
                     /locus_tag="ACJFEZ_001635"
     CDS             968..1780
                     /gene="kdsA"
                     /locus_tag="ACJFEZ_001635"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HGG0917726.1"
                     /translation="MKKMILIAGPCVIENKDLVFKVAQNLQEFNENENIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKVLQSVKNEFGMKILTDIHESTQAAPVSEVVDVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEEEGYEVADKNGIF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGVDGFFFETHTNPCEALCDGPNMLDLNRLKACVKTLLEIQNIIEGK"
     gene            1782..2246
                     /gene="ribE"
                     /locus_tag="ACJFEZ_001636"
     CDS             1782..2246
                     /gene="ribE"
                     /locus_tag="ACJFEZ_001636"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HGG0917727.1"
                     /translation="MTIIEGKLNLDSNTKIAIINARFNHIITDRLVEGARDAFLRHGG
                     KEENLSLILVPGAFELPFALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEF"
     gene            2246..2644
                     /gene="nusB"
                     /locus_tag="ACJFEZ_001637"
     CDS             2246..2644
                     /gene="nusB"
                     /locus_tag="ACJFEZ_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HGG0917728.1"
                     /translation="MATRHQVRQSVISLLYALEMNEKNENFIDEFLNEKKIRNEQKNF
                     TLSLYEGIIKNLDDIDKNLNPYLNENEIEKLGHIERAILRLGAYELLFTDTPNAIVIN
                     EAIELAKELANDNSPKFINGVLDTLVKAKQ"
     gene            2641..3480
                     /gene="pyrF"
                     /locus_tag="ACJFEZ_001638"
     CDS             2641..3480
                     /gene="pyrF"
                     /locus_tag="ACJFEZ_001638"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HGG0917729.1"
                     /translation="MKLCVALDLATKEECLRLAKELKGLDLWLKVGLRAYLRDGFKFI
                     EELKKIDEYKIFLDLKIHDIPNTMADACEEISKLGVDMINIHASAGKVAMQEVMSRLN
                     RFNKRPLVLAVSALTSFDEENFYSIYKQNIDEAVIHFSKMSYQNGLDGMVCSVFESKK
                     IKEHTNSNFLTLTPGIRPFGEASDDQKRVANLTMARENLSDYIVVGRPIYKNENPRAV
                     CEKILDKIHRKNISENDIEQNYEAMQQKEWDMCNHFEEWIKTQPDKEQALKEFYTKCG
                     IKY"
     gene            3477..>4208
                     /locus_tag="ACJFEZ_001639"
     CDS             3477..>4208
                     /locus_tag="ACJFEZ_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917730.1"
                     /translation="MNYQQLECDYFNLYNQFISVDFQISLFEKNHKSLIKDFIFFYHQ
                     ILKQKDLNFLLGVRNKIALKVHNYMQEYSTSPKDLSLICLREHKHIEFFQRFYKALAY
                     FVAFRKKLDEEQKIKNLISNIHEYFGCHFINSDFNNLQNFQKNDFFTLPEKCLQYFHL
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLIDGTFEIYELIFKEYFLLFPKDEELKDEL
                     KKIKNLEFKILMQEVSRVKLLNHYKE"
BASE COUNT         1486 a          598 c          765 g         1359 t
ORIGIN      
        1 aagactagaa ttaaccataa tttaatcaag gaaaaaagat gctaaaagtc atcaaacata
       61 atttaggaat ttattttatg attttagcgt gcttagattt tgcacttatg ggagcttgtg
      121 cgaaaattct tagcaaagaa atgagttcga ttgaaattat gttttttaga aatatcatcg
      181 gcgtattgtt tatagtttat ctactaaaac gctcaaaagt tcacaaagaa ggaggacatt
      241 tttggctttt agtctttcgc ggggtaacag gaacactttc gctttatatg tttttttaca
      301 atgtttcaaa tattacccta gggggtgctt ttgcttttca aaaaactgct ccaattttca
      361 tcactttaat agcttttatt atttttaaag aaaatatcgg agccaaggga tggctgggga
      421 ttttaatcgc atttagcggg gtgcttttaa ttgcgcaacc ttgggcggat agttcaactc
      481 attcgggttt tgatttaaaa aattctatca taggtgttat gagtggattt ttagcagcct
      541 tggctcttac aagtgtaaga gagcttagaa aattttacac tacagaacaa attgcatttt
      601 cttttatcct tttgggggct ttaatgcctt taatctctat gataggtgct gaattttttg
      661 agccaaaaca tcttgattct ttgcatttgg attttatttt agcacctttt gtcatgccta
      721 gccttacagc ttggcttatc attgctgtca tgggagcctt gggcactatt tatcaaattc
      781 atgtaaccaa agcttatggc atagccaaac aagcaggtgt tgtagcaggt gtaagctatc
      841 ttgatgtagt ctttagtatg gtagtgggta taattttggg tgatgattta ccaagtgcta
      901 tggttttttt aggtataata ggcattattt ttggtggaat aattttggtt aaaaacaaag
      961 gaaaaaaatg aaaaaaatga tactcattgc cggtccttgc gtcattgaaa ataaggattt
     1021 ggtttttaaa gtagcacaga atttgcaaga atttaatgaa aatgaaaata tagaatttta
     1081 ttttaaatca agctttgaca aagcaaatcg tacaagtatt aattctttta gaggccctgg
     1141 tcttgaagaa ggattgaaag ttttacaaag tgtaaaaaat gaattcggta tgaaaatctt
     1201 aactgacata cacgaaagca cgcaagcagc acccgtaagc gaggtggttg atgttttaca
     1261 aattcctgct tttttatgca gacaaactga tctgctagtc gcagcagcca aaacaaaggc
     1321 gaaagtaaat attaaaaaag ggcaatttct taacccaagc gatattaaat acagtgtcaa
     1381 aaaagtactt caaacacgcg gtatagaaga agaaggctat gaagtagctg ataaaaatgg
     1441 tatttttgta gctgaaagag gagctagctt tggctatgga aatttagtcg tggatatgag
     1501 atctttggtt atcatgcgtg aatttgctcc tgttatattt gacgctactc atagtgtgca
     1561 aatgccagga gctgcagggg gaagtagtgg aggaaaaagc gaatttgtag agcctttagc
     1621 aagagcagca gcagctgtag gagtagatgg ctttttcttt gaaacacata ctaatccttg
     1681 cgaagcttta tgcgatgggc ctaatatgct tgatcttaat cgtcttaaag cttgtgtaaa
     1741 aacactttta gaaattcaaa atatcattga aggaaaataa tatgactatc attgaaggaa
     1801 aattaaattt agactcaaat acaaaaattg ctatcatcaa tgcaagattt aatcacatca
     1861 tcaccgatcg ccttgtagaa ggtgcaagag atgctttttt aagacatggt ggcaaagaag
     1921 aaaatcttag ccttatactt gttccaggcg cttttgaact tccttttgct ttaaaaaaag
     1981 ctatagaaag taaaaaattt gatgcgattt gttgtgtggg tgcggtcatt cgtggctcaa
     2041 ctccgcattt tgattatgtt tcggcagaaa ccactaaggg cattgccaat gtaagtttaa
     2101 accacaatat ccctgtaagc tttggagttt taacaactga tactatagaa caagccatag
     2161 aaagagcggg aagcaaagca ggaaataaag gctttgaagc aatgacaact gttattgaaa
     2221 tgctaaattt aagcaaggaa ttttaatggc aacgcgtcac caagtaagac aaagtgtgat
     2281 ttctttgctt tatgccctag aaatgaatga aaaaaatgaa aattttattg atgaatttct
     2341 caatgaaaaa aaaatccgca acgagcaaaa aaatttcaca ctgagtttat acgaaggaat
     2401 tataaaaaat cttgatgata tagataagaa tttaaacccc taccttaacg aaaatgaaat
     2461 tgaaaaatta ggacatatcg aaagagccat actgcgactt ggtgcctatg aattgctttt
     2521 tacagacacg cctaatgcca tagtgattaa tgaagctata gaacttgcta aagaacttgc
     2581 taatgataat tctccaaaat ttatcaatgg ggttttagat actcttgtta aggcaaaaca
     2641 atgaaactct gcgtagctct tgatcttgcc accaaagaag agtgcttaag gcttgctaaa
     2701 gaattaaaag gtttagatct ttggctaaaa gtgggtttaa gagcctattt aagagatggc
     2761 tttaaattca tagaagaact taaaaaaatc gatgaatata aaatttttct cgatcttaaa
     2821 attcatgata ttcctaatac catggcagat gcttgcgagg aaatttcaaa acttggcgtt
     2881 gatatgatta atatccatgc aagtgctgga aaagtcgcta tgcaagaagt gatgtctaga
     2941 ctcaatcgct tcaataaaag acccttggtg ttagcagttt cagcacttac tagctttgat
     3001 gaagaaaatt tttacagcat ttataagcaa aacatcgatg aagctgtgat tcatttttca
     3061 aaaatgtctt atcaaaatgg acttgatggt atggtatgtt cggtttttga aagtaaaaaa
     3121 attaaagaac atacaaattc aaatttctta accctcactc ctggaattcg tccttttggg
     3181 gaagcaagtg atgatcaaaa acgcgttgct aatcttacaa tggctagaga aaatttaagt
     3241 gattatatcg ttgtgggaag acctatatat aaaaatgaaa atcctagagc tgtatgtgaa
     3301 aaaattttag acaaaataca cagaaaaaat ataagcgaaa atgatataga gcaaaattat
     3361 gaagcaatgc agcaaaaaga atgggatatg tgcaatcatt ttgaagaatg gatcaaaact
     3421 cagcctgata aagaacaagc tttgaaagaa ttttatacta agtgcgggat aaaatattga
     3481 attatcagca attagaatgt gattatttta atctttataa tcaatttatt agcgtagatt
     3541 ttcaaatttc attatttgaa aaaaatcata aaagcttgat taaagatttt atattttttt
     3601 atcatcaaat tttaaaacaa aaagacttaa attttttact cggagtgaga aacaaaattg
     3661 ctcttaaagt tcataattat atgcaagaat actccacttc tccaaaagat ttgagtctta
     3721 tttgcttaag agaacacaaa catattgaat tttttcagag attttataaa gccttggctt
     3781 attttgtagc ctttagaaaa aaacttgatg aagagcaaaa aattaaaaat ttgatttcaa
     3841 atatccacga atactttggc tgtcatttta tcaattctga ctttaacaat ttacaaaatt
     3901 ttcaaaaaaa tgatttcttt acactgcctg aaaaatgtct tcaatatttt catcttgcta
     3961 tgattcatct ttgttttatg gttttaaatc ctttaaattt taaggattct aatcgacacc
     4021 ttgataaagc aattaactat cttatcgatg gaacttttga aatttatgag ctcatcttta
     4081 aagaatattt tctattattt ccaaaggatg aagagcttaa agatgaactt aaaaaaataa
     4141 aaaatttaga atttaaaatt ctaatgcaag aagtttcaag agttaaacta ctcaatcatt
     4201 ataaagaa
//
LOCUS       DBBXRO010000136         4183 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.137, whole genome shotgun sequence.
ACCESSION   DBBXRO010000136 DBBXRO010000000
VERSION     DBBXRO010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4183
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.137"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            12..389
                     /locus_tag="ACJFEZ_001640"
     CDS             12..389
                     /locus_tag="ACJFEZ_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional initiation protein Tat"
                     /protein_id="HGG0917731.1"
                     /translation="MLEVSRRNFLKATDLSAVCLSGLNASFLEFSQAKQVKYFIKDSE
                     IPHQGNFINADEILLIEKDISNIYSQLKEAFENKVLIGSVSSGTTFFVIRTMAADYGM
                     RVAYEKKQGDFYTWILAPKGVKL"
     gene            452..742
                     /locus_tag="ACJFEZ_001641"
     CDS             452..742
                     /locus_tag="ACJFEZ_001641"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HGG0917732.1"
                     /translation="MGKEWVFKTQEDLDLYRDAYSPQWDDDDEPIPSLALAPKNVEEV
                     QAIVKIANEFKIPLFPISTGKNLGYGSYVDGLFSQSNFGIVTKMGFWMRLKF"
     gene            721..1347
                     /locus_tag="ACJFEZ_001642"
     CDS             721..1347
                     /locus_tag="ACJFEZ_001642"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="p-cresol methylhydroxylase"
                     /protein_id="HGG0917733.1"
                     /translation="MDAVEILNYLEDSFIVGWPQYFSPLNPPYGKPMNAELKGYLTSK
                     NGLPDMDKIQNYALKNKIPYWNIDVSVYGCKEVCYANLEYIKQRFKIIEGVDISIVQE
                     FSLPLNLEQKKQLKHKVTLGIPNMEIFWLSTRGEVLEPSDGHVWFSPIIPRDGKELLK
                     CQEVYMNLFREFGEESPITPFSHPRSWMYRAFCFMLAFNNSRTDKAHN"
     gene            1359..1490
                     /locus_tag="ACJFEZ_001643"
     CDS             1359..1490
                     /locus_tag="ACJFEZ_001643"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917734.1"
                     /translation="MYRQMVQTAAEHGWGDYRAAPTFQDDVMGAYSYNNHILRRFNE"
     gene            1621..1968
                     /locus_tag="ACJFEZ_001644"
     CDS             1621..1968
                     /locus_tag="ACJFEZ_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0917735.1"
                     /translation="MKKIALFFVLFVCLLNFNAKDKEWLPKGESISVYEYISNNPRSP
                     AAFSSVDSKKLNANQRKGQQVYSKWCIACHGEGMPGTNALSALYKDQGIPALLEDRTD
                     LSPDLVTIFFALW"
     gene            complement(2175..3821)
                     /locus_tag="ACJFEZ_001645"
     CDS             complement(2175..3821)
                     /locus_tag="ACJFEZ_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006847 - plasma membrane acetate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation acetate symporter"
                     /protein_id="HGG0917736.1"
                     /translation="MKVFIFLSLIFNLALSAGFDLGEVHQKPINITAVSMFLVFVLAT
                     LFITYYSNKKSKSKSGFYTAGGNITGMQNGVAIAGDYMSAASFLGITALVFTNGFDGL
                     IYSIGFLVGWPIILFLIAEKFRNLGKFTFADITAYRLEAKPIRVISAISALSVIIFYL
                     IAQMVGAGQLIQLLFGLPYTFAVVLVGILMICYVTFGGMHATTWVQIIKAILLLAGAT
                     FMAVMILYLTKFDLKYYFDLAISHHPKGENIMKPGTFLPDTVSALSLGLALMFGTAGL
                     PHILIRFFTVKDAKEARKSVFYATGFIGYFYILTFIIGFGAIALLLGNPQFTNADGSF
                     NGASNMIAVTLADVLGGDVFLGFISAVAFATILAVVAGLAISGAGAISHDLYVNVIKK
                     GDVKHEDEMRVTKIATIAIGIFAILLGIVFEKQNVAFTVGLAFAIAASVNFPILLLCI
                     YWKNLTTKGAFWGGLIGLIVVLALVILSPSIWVKSFGFSEAIFPYDHPALFSMPLSFI
                     LIYIISKLDNSKRAKKDKEGFEAQDFRAQSGVGVSEAVAH"
     gene            complement(3818..4177)
                     /locus_tag="ACJFEZ_001646"
     CDS             complement(3818..4177)
                     /locus_tag="ACJFEZ_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HGG0917737.1"
                     /translation="MNLNAEQKNAVLRFKKFVSFRNKISLNLSLIVLICYYIFVLGIG
                     LMPEILGYKLGPSSITLGIMVGIGLILLCIISTGIYTFIANYFLDKEQEEVIKSLENE
                     GLLDALKDGKINYKELV"
BASE COUNT         1484 a          685 c          723 g         1291 t
ORIGIN      
        1 acgattaatt catgttagaa gtttcgcgta gaaatttttt aaaagctacg gatttaagtg
       61 ctgtttgtct ttctggtttg aatgcttctt ttttggaatt ttctcaagct aaacaagtga
      121 aatattttat caaagatagt gaaattcctc atcaaggaaa tttcattaac gcggatgaaa
      181 ttttacttat tgaaaaagat atcagcaata tttactcaca acttaaagaa gcttttgaaa
      241 ataaagtact cattggaagt gtgagtagtg ggacaacttt ttttgtgatc cgcactatgg
      301 cggcggatta tggtatgcgt gttgcgtatg aaaaaaaaca aggtgatttt tatacttgga
      361 ttttggcacc aaaaggagtt aaattataat tttaccaaaa aatgtttcgc aaagtgattt
      421 tacagctgca gtagcaaaat ttgaaaaagc tttgggtaaa gagtgggtat ttaaaaccca
      481 agaggattta gatctttata gagatgcgta tagcccgcaa tgggatgatg atgacgaacc
      541 tatcccttct ttagcgcttg cacctaaaaa tgtggaagaa gttcaagcta tagttaaaat
      601 agcaaatgaa tttaaaattc ctctttttcc tatttccaca ggtaagaatt taggctatgg
      661 ttcttatgta gatggacttt tttcacaatc taatttcggt atcgttacaa aaatgggctt
      721 ttggatgcgg ttgaaatttt aaattatctt gaggatagtt ttattgtggg ttggccgcag
      781 tattttagtc cattaaatcc accttatgga aaaccgatga atgcggagtt aaaaggctat
      841 cttacaagta aaaatggctt acctgatatg gataaaattc aaaattatgc tttgaaaaat
      901 aaaatccctt attggaatat cgatgtttca gtttatggct gtaaagaagt gtgctatgca
      961 aatttagaat atatcaagca aagatttaaa atcattgaag gtgtagatat ttctatcgtt
     1021 caagaattta gtttaccttt gaatttggag caaaaaaagc agcttaaaca taaggttact
     1081 cttggaattc caaatatgga aattttttgg cttagcacaa gaggtgaggt tttagaacca
     1141 agtgatgggc atgtatggtt ttcacctatt attccacgcg atggtaaaga acttttaaaa
     1201 tgccaagaag tgtatatgaa tttatttaga gaatttgggg aagaatctcc tataacacct
     1261 ttttcgcatc ctagaagttg gatgtatcgt gcattttgct ttatgttagc ctttaataac
     1321 tcaagaaccg ataaagcaca caattaaaag tgcgtaaaat gtatcgtcaa atggttcaaa
     1381 ctgctgcaga acatggatgg ggagattatc gcgcagctcc aactttccaa gatgatgtaa
     1441 tgggtgcgta ttcttataac aatcatattt tacgccgctt taatgagtag cttaaagatt
     1501 gtattgatcc aaatggaatt tagcacctgg tcgtggaggc atttggccta aaaatttaag
     1561 agatgagcgt tttgttaata acaaacgcga cgcattaaga atgaaagaag gtaaagaaaa
     1621 atgaaaaaaa tcgctttatt ttttgtttta tttgtttgct tgctgaattt caatgctaag
     1681 gataaagaat ggttgccaaa gggtgaatct ataagtgttt atgagtatat ttcaaacaat
     1741 ccaagatccc ctgcagcatt ttcaagcgtt gatagtaaaa aattaaatgc aaatcaaaga
     1801 aagggacagc aagtttatag taagtggtgt atagcatgtc atggcgaggg aatgcctggg
     1861 acaaacgcac tttcagctct ttataaagat caaggaattc ctgcgctttt agaagataga
     1921 acggatttaa gccctgattt ggtaacgatt ttttttgcgt tatggtaaac attcaatgcc
     1981 gtttttccgt aaaactgaaa tcagcgataa agaattgcag tatttaggtg agtatttggg
     2041 tagaaactac aaataaagat aaactttaaa ggactttatg ttaagtaaag tcctaaaata
     2101 cttttctaat gagaatattt actggtttaa atttaaaaaa gcttctgtgc taaatgcaaa
     2161 gaagcttttt ttgtttaatg cgccacagct tcacttactc ccacaccgct ttgagctcta
     2221 aaatcttgtg cttcaaaacc ttctttatct tttttagctc ttttagaatt atccaatttt
     2281 gaaatgatat aaatgagtat aaaacttaaa ggcattgaaa ataaagcagg atgatcataa
     2341 ggaaaaatag cttcactaaa accaaaactt tttacccata tactagggct taaaatcaca
     2401 agagcaagaa cgactataag tcctataagt ccaccccaaa aagcgccttt agtggtaaga
     2461 tttttccaat aaatacagag taaaagtata ggaaaattta cactcgcagc aatagcaaaa
     2521 gcaagtccta cggtaaaagc aacattttgt ttttcaaaga caatgcctag caaaatagca
     2581 aaaattccta tagctatagt tgcgattttt gtaactctca tttcatcttc atgtttgaca
     2641 tcaccctttt tgataacatt gacatataaa tcatgactta tagctcctgc acctgaaatc
     2701 gcaagtcctg caacgactgc taaaatagta gcaaaagcta ctgctgaaat aaatcctaaa
     2761 aagacatctc cacccaaaac atcagctaag gtaactgcta tcatattact agccccatta
     2821 aaacttccat cagcgttagt aaattgagga ttaccaagta agagcgctat agcaccaaag
     2881 cctatgatga aagtaagtat gtaaaaatac cctataaatc ctgttgcata aaatactgac
     2941 tttctagctt ctttagcatc ttttacggta aaaaatcgga taagtatatg aggtaaaccc
     3001 gcagttccaa acataagagc caagcctaaa gaaagagctg atacggtatc aggcaaaaaa
     3061 gtccctggtt tcattatgtt ttcacctttt ggatgatgag aaatggctaa atcaaaataa
     3121 tattttaaat caaatttcgt aaggtataaa atcataacag ccataaaagt agcccctgct
     3181 agaagtaaaa tggctttgat gatttgcacc caagtggttg cgtgcattcc tccaaaggtt
     3241 acataacaaa tcattaaaat tccgaccaaa acaaccgcaa aagtgtaagg taaaccaaaa
     3301 agcaattgta tgagttgtcc tgctcctacc atttgagcaa taagataaaa gataataacg
     3361 cttaaagcag aaatagctga tataacgcgt ataggcttag cttctaaacg ataagcggta
     3421 atatctgcaa aggtaaattt gccaagattt ctaaattttt ctgcaattaa aaataaaata
     3481 ataggccaac ccactaaaaa tcctatagaa taaataagcc catcaaagcc attagtaaaa
     3541 actaaagcgg taattccaag aaagcttgcc gcactcatat aatcccccgc tatagctaca
     3601 ccattttgca ttcctgtgat atttcctccg gcggtataaa atccactttt ggatttggat
     3661 tttttgttag aataataggt gataaacaaa gtagctaaaa caaagactaa aaacatacta
     3721 acagcagtta tatttatagg tttttgatga acttctccta gatcaaaacc ggcgcttaag
     3781 gctaaattaa agattaaact taaaaatata aagactttca tactagctcc ttataattga
     3841 tttttccatc ttttaacgca tcaagcaacc cttcattttc caagctttta atcacttctt
     3901 cttgctcttt atcaagaaaa taatttgcga taaaagtgta aattcctgtg gaaataatac
     3961 acaataaaat caggccaatg cctaccataa taccaagcgt gatggaacta ggacccagtt
     4021 tataccctaa aatttcaggc ataagtccta tacctaaaac aaagatatag taacaaataa
     4081 gcactatcaa agataggtta agagatattt tgtttctaaa agaaacaaac tttttaaatc
     4141 tcaaaacagc atttttttgc tccgcattta aattcatggg tac
//
LOCUS       DBBXRO010000137         4044 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.138, whole genome shotgun sequence.
ACCESSION   DBBXRO010000137 DBBXRO010000000
VERSION     DBBXRO010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4044
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.138"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(9..944)
                     /locus_tag="ACJFEZ_001647"
     CDS             complement(9..944)
                     /locus_tag="ACJFEZ_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HGG0917738.1"
                     /translation="MKKVDLIVVGAGPTGIGCAVEAKLKNKEVLVLEKSNNICQTLMQ
                     FYKDGKRVDMAYKGCEGTNHGHVPFQDGTKESTIETFQNALNEHKIEVEFGSEVESVK
                     NENGVFLVSTGKGVYECKNIIVAIGRMGKPNKPDYKLPITLTKIINFNANSVLGDEKI
                     LVVGGGNSAAEYAVDLANSNKVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     IEELEDDNGKAKVKFNDGSNETYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILAVI"
     gene            1015..2247
                     /locus_tag="ACJFEZ_001648"
     CDS             1015..2247
                     /locus_tag="ACJFEZ_001648"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HGG0917739.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKENIILKLACALRENFKIILEA
                     NEKDMTNFTKSGAMRDRLLLDKKRIFSLCDALEKIAYLEDPIGKISKGWVNYAGLKIE
                     KISIPIGLISVIYEARPSLSAEIIALMIKSSNACVLKGGSEAKFTNSAIFDLVYKVLE
                     EFNLQDCFAMFYERNEIMQILAFDDLVDVIIPRGSSNMIQEIASHTKIPLIKQDKGLC
                     HAFVDESANLNMALEIILNAKCQRVSVCNALETLLIHEKIAKDFIKLLIPEFEKFKVK
                     IHAHENILEHFKNSKLEISKADESTFDTEWLDYAISIKSVKDCDEAIEHINQHSSLHS
                     ETIISNNALNIGKFQRLLRSSCIYVNASTRFSDGGEFGFGGEVGISTSKLHARGPMGV
                     EDICTYKYLISGEGQIRK"
     gene            2244..3329
                     /locus_tag="ACJFEZ_001649"
     CDS             2244..3329
                     /locus_tag="ACJFEZ_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HGG0917740.1"
                     /translation="MSKRKILKQQCKEIIQLNPTERVWQMPFFFALAVGFALSIAAYY
                     DRMDLGLIAIIGIMAFVYTTNTPMYHRMAVTMCCSFGLCLSFLIGLCTHFFPAFSPLV
                     VGLVAMASSILIRYYNIGAPGYFFFVFSCLLASFFPFPPKDYIFLVGLICIGGIIANI
                     TAFLYSVSVIYIFKNSPPKPVLKNGNLGFDVIFVDSIIIAFFVGFAVFLGTFLELDRS
                     YWVAVSTTVILQGTNLNSVWIKQLQRILGTTVGILFAWWLLRIKFTPLEFIFLMMFLA
                     FIIEFLVVRNYALAVIFLTPYVTYLAEAASFGNLSVDMLIHARLQDIIIGSLLGLLGG
                     FVIHRAYLRKYFKYIAKYIFRVKLTSK"
     gene            complement(3491..>4044)
                     /gene="efp"
                     /locus_tag="ACJFEZ_001650"
     CDS             complement(3491..>4044)
                     /gene="efp"
                     /locus_tag="ACJFEZ_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HGG0917741.1"
                     /translation="GDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIKSFIDGK
                     VLEKTFHAGDKCEAPNLEEKTMQYLYDDGENCQFMDTESYEQVAISDEDVGEAKKWML
                     DGMMVDVLFHNGKAIGVEVPQVVELKIVETAPNFKGDTQGSNKKPATLETGAVVQIPF
                     HVLEGEVIRVDTVRGEYIERANK"
BASE COUNT         1271 a          695 c          613 g         1465 t
ORIGIN      
        1 aaatttgatt aaattacggc aagtatcttt acagcgtcat ttaagcctgt tactatgctt
       61 gcgccatttt tagttgcgat atcccctgct acgaaaatac cttttacatt gctttgttta
      121 ttttcatcca ttaaaggaac tcctttatca tcgacattga ttccgcattt ttgtaaaaaa
      181 tcaagaggag tagaaccacc gatagcataa atgattctat cataagtctc gttgctgcca
      241 tcgttaaatt tcaccttagc tttaccatta tcatcctcaa gttcttctat atctataccg
      301 agttttaatt ctactttgcc tgaatttcca gcttcgtgaa tatctttaag attgatatcg
      361 tttaatcttg taaattcttt cttacgataa caaaggctta ctttattaga attagctaaa
      421 tctactgcgt actctgcagc tgaatttccg cctcctacaa caaggatttt ttcatcacct
      481 aaaacagaat tagcattgaa attaataatc tttgttaaag ttataggaag tttataatca
      541 ggcttattag gcttacccat tctacctata gctacgatga tatttttaca ctcataaaca
      601 cccttgcctg tacttactaa aaatactcca ttttcatttt tcacactctc tacctcagag
      661 ccaaactcaa cttctatttt atgctcattt aaagcatttt gaaaagtctc tatagtgctt
      721 tctttggttc catcttgaaa aggaacatgt ccgtgatttg tgccttcaca acccttataa
      781 gccatatcaa cccttttgcc atctttataa aactgcatca aagtttgaca aatattgttt
      841 gatttttcta ataccaaaac ttctttattt ttaagcttag cttcaaccgc acaaccaatt
      901 cctgtcggcc ctgcacctac tacaattaaa tctacttttt tcattcaaat ttacctttca
      961 attctaaatt tttttgtata atttatcaag ttttttgtaa ataaaggatt aaaaatgcga
     1021 aatttacttg aaaatattaa gaaaaattct caaaaactgc tcaatttaac tcccaaggat
     1081 aaagaaaata ttatattgaa attagcttgt gctttaagag agaattttaa aatcatatta
     1141 gaagccaatg aaaaagacat gacaaatttt accaaaagcg gagcaatgcg agatagactt
     1201 ttactagata aaaaacgcat tttttctctt tgtgatgctt tggaaaagat tgcttattta
     1261 gaagatccta taggtaaaat ttctaaaggc tgggttaatt atgcgggctt aaagatagaa
     1321 aaaatcagca ttcctatagg attaatcagt gtgatttatg aagcaagacc aagcctaagt
     1381 gctgaaatca tcgctttaat gataaaaagc tccaatgctt gcgtacttaa aggaggcagt
     1441 gaggcaaaat ttacaaattc ggccatattt gatcttgttt ataaagtgtt agaagagttt
     1501 aatttgcaag attgttttgc tatgttttat gaaagaaatg aaatcatgca aattttagct
     1561 tttgatgatt tggttgatgt gatcatccct cgtggaagtt caaacatgat acaagaaatt
     1621 gctagtcata caaaaattcc actcattaaa caagataaag gcttatgtca tgcttttgtg
     1681 gatgagagtg caaatttaaa tatggcttta gaaatcatcc ttaatgcaaa atgccaaaga
     1741 gtaagcgttt gtaatgctct agaaaccctt ttaatccatg aaaaaattgc taaagatttt
     1801 ataaagcttt taatccctga atttgaaaaa tttaaggtaa aaattcacgc acatgaaaat
     1861 atcttagaac attttaaaaa ctcaaaatta gaaatttcaa aggctgatga aagcactttt
     1921 gatacagaat ggcttgatta tgctatcagt ataaaatcgg taaaagattg tgatgaggct
     1981 atagagcata tcaaccaaca cagctcttta cactctgaaa ccataatctc aaacaatgct
     2041 ttaaacatag gcaaatttca acgccttcta cgctcatctt gtatttatgt caatgcctcg
     2101 actcgtttta gtgatggggg tgaatttggc tttggtggag aggtaggaat ttccacaagc
     2161 aaacttcatg caagaggtcc tatgggagtt gaagatattt gcacctataa atacttaatc
     2221 agtggagaag gacagataag aaaatgagta aaagaaaaat tttaaaacaa caatgtaaag
     2281 aaatcataca acttaatcca accgaaagag tttggcaaat gccttttttc tttgccttag
     2341 cagttggatt tgcgcttagt attgctgcat attatgatcg tatggactta ggattaattg
     2401 ctataatagg aatcatggct tttgtttata caaccaatac acctatgtat catagaatgg
     2461 ctgttacaat gtgctgctct tttggtttgt gtttgtcttt tttaatagga ctttgcacgc
     2521 atttttttcc tgcattctct ccgcttgtag ttggcttagt agctatggct agctctattt
     2581 tgatacgcta ttataatata ggcgcgccag gatatttttt cttcgttttt tcctgtttac
     2641 tagcttcatt ttttcctttt ccgccaaaag attatatttt tctagtggga ctaatctgta
     2701 taggcggtat cattgctaat ataactgctt ttttatactc tgtatctgtc atttatattt
     2761 ttaaaaattc tccacccaaa cccgttttaa aaaatggaaa tttaggtttt gatgttatct
     2821 ttgtggattc tataattatt gctttttttg ttggctttgc tgtgttttta ggaacatttt
     2881 tagaacttga tcgaagttat tgggttgcag ttagcacaac ggttatctta caagggacta
     2941 atttaaattc agtttggata aaacaacttc aacgcattct tggaacaaca gttggaattt
     3001 tatttgcatg gtggctttta agaattaaat tcactccttt agaatttatc tttttaatga
     3061 tgtttttagc ctttataatt gaatttttag tagttagaaa ctatgcctta gctgtcattt
     3121 ttcttacacc ttatgtgacc tatttggccg aggcggcttc ttttggaaac ttaagtgttg
     3181 atatgttaat acacgctcgc ttacaagata ttatcatagg cagtctttta ggacttttag
     3241 gaggttttgt tattcatagg gcttatttaa gaaaatattt taaatacatt gcaaaataca
     3301 tttttagagt aaaattgaca agtaaataat tctttaaatt cagcttttaa gcttgcatgc
     3361 attaaaagct gaaataatat attttaaaat cttacataaa tatcttaatt tatacaaact
     3421 tgctgaattt gatatttatt ttttgcgata aaatcaaacg cgcttaaaaa aatctgtacg
     3481 cgtaaaaatt ttatttatta gctctttcga tatattctcc gcgcactgta tcaacgcgta
     3541 taacttcacc ctctaaaaca tggaaaggaa tttgcacaac tgcacctgtt tcaagtgtag
     3601 caggtttttt gtttgaacct tgagtatcgc ctttaaaatt tggagctgtt tctacaatct
     3661 taagttctac aacttgcgga acttccacgc caatagcctt gccgttgtga aaaagtacat
     3721 ccaccatcat accatcaagc atccattttt ttgcttcgcc tacatcttca tcactgattg
     3781 caacttgctc ataagattct gtatccataa attgacaatt ttctccatca tcataaagat
     3841 actgcatagt tttttcttcc aaatttggag cttcgcattt atctcctgcg tgaaaagttt
     3901 tttctaaaac cttaccatca ataaaagatt tgatttttat acgcacaaaa gcaggacctt
     3961 ttcctggttt tacatgttga tattcaacta ttttaaaagg aattccatcg atttcgattt
     4021 taagcccttt ttttaaatca ccca
//
LOCUS       DBBXRO010000138         4024 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.139, whole genome shotgun sequence.
ACCESSION   DBBXRO010000138 DBBXRO010000000
VERSION     DBBXRO010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4024
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.139"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..602
                     /locus_tag="ACJFEZ_001651"
     CDS             <1..602
                     /locus_tag="ACJFEZ_001651"
                     /inference="COORDINATES: protein motif:HMM:NF014533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HGG0917742.1"
                     /translation="NTYIKSLYYKGNLDLLSEPKKIAIVGARNATEDGIKRAIKLSKE
                     LSSKGFVIVSGLAHGIDTAAMRSTIKNNGSLIGVIGTPINEYYPIENKALQDEIANKH
                     LLVSHVPFYKYSIQPFSTKKFYFPERNAVMAAISDATVIVEASETSGTLTQARACIEI
                     GRKLFILNSCFENGLKWPYTYEKKGAIRVKKIEDILDNL"
     gene            599..1201
                     /locus_tag="ACJFEZ_001652"
     CDS             599..1201
                     /locus_tag="ACJFEZ_001652"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HGG0917743.1"
                     /translation="MKPIKVDLDIHSIPYLNSDDACYYFLDYKPNSGFEANSLVFNFK
                     KDLLFKNHPSWYYRNEAIKEFAKMINNAFLNINKNIFNIIPMPTSKPKNSTEFNNRLM
                     QTMEELLKLDNSYKIFDCFDVQNNLVPAHYNGYRNPNDLKQEILFYPPNFFDKNIVLI
                     DDVLTTGGHFKACKNILLEKLDPNINIVGLFLAKTEHYYQ"
     gene            complement(1270..1749)
                     /locus_tag="ACJFEZ_001653"
     CDS             complement(1270..1749)
                     /locus_tag="ACJFEZ_001653"
                     /inference="COORDINATES: protein motif:HMM:NF025724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4410 domain-containing protein"
                     /protein_id="HGG0917744.1"
                     /translation="MRKVILYSFAILFLSACSYSQINNVSQRNVIDADRKFSNAYAEC
                     EQNSEESRYLNDKINELLKNKKIYGKDIKIECKISDYDEGNRALRYFISFGAGKAKAK
                     IEVRLTDDNNQTISTFSNDAILPGGLFGGESKGVFDNAASGIVEYVKKTFIDKNKYK"
     gene            1889..2080
                     /locus_tag="ACJFEZ_001654"
     CDS             1889..2080
                     /locus_tag="ACJFEZ_001654"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917745.1"
                     /translation="MLEVKLDLRPDIKKMLEIAFERNYSKSYTSLEEFLANVLHNAVK
                     NLITKEAFENKGFVISLKD"
     gene            complement(2070..2210)
                     /locus_tag="ACJFEZ_001655"
     CDS             complement(2070..2210)
                     /locus_tag="ACJFEZ_001655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917746.1"
                     /translation="MDEIQSLKAQLNNLLLRVSELESKVATLEKRLNDKDFQVLNETP
                     NL"
     gene            2262..2534
                     /locus_tag="ACJFEZ_001656"
     CDS             2262..2534
                     /locus_tag="ACJFEZ_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917747.1"
                     /translation="MSFTDLYFDREEKRISNYARELVKDELESRENFADIFNSLQEFK
                     NILEVSLEDDEDIAASLQAYGDEFINDTYDLLEKVRKFEKKYEKLY"
     gene            3121..3390
                     /locus_tag="ACJFEZ_001657"
     CDS             3121..3390
                     /locus_tag="ACJFEZ_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917748.1"
                     /translation="MKAYHTKEQVIIKLSKDEYRKEMKLNKSLKDENKSLKTEISNLE
                     NEKIELLKQLKDQIEANMKNIKEISSLQNKIYELLYAKERSKLCS"
     gene            3381..3635
                     /locus_tag="ACJFEZ_001658"
     CDS             3381..3635
                     /locus_tag="ACJFEZ_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917749.1"
                     /translation="MFLIFKKNEKIRNLEKEVQRLKGVIALKDTAINEMSLKFEEEIK
                     INVELSNFRIKILDALGLIGVFKNDDKAIKEVKRLKEKEL"
     gene            3632..3784
                     /locus_tag="ACJFEZ_001659"
     CDS             3632..3784
                     /locus_tag="ACJFEZ_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917750.1"
                     /translation="MKRQTKPLSIRIPLELKEELQKIADKEYRPLATQIVKILSDYVK
                     NKNKTN"
     gene            complement(3777..3974)
                     /locus_tag="ACJFEZ_001660"
     CDS             complement(3777..3974)
                     /locus_tag="ACJFEZ_001660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917751.1"
                     /translation="MEEKQKTNKSEIISIRLDTVTKNKLAYICELEYRPMALQIRKII
                     EDYINTYESENSLWQKGDYPN"
BASE COUNT         1551 a          518 c          577 g         1378 t
ORIGIN      
        1 aaaatacata tataaaatca ctttattata aagggaattt agatttactc agcgagccta
       61 aaaaaattgc tatagttggg gcaagaaatg caacagaaga tggaataaaa agagctataa
      121 aattatcaaa agaattatca agcaaaggtt ttgtaattgt ttctggatta gcacatggaa
      181 ttgacacagc agcaatgaga tctactatta aaaacaatgg aagccttatc ggagtaatag
      241 gtacgcctat taatgaatat tatcctattg aaaacaaagc gctgcaagat gagatagcaa
      301 ataaacatct tttagtaagt catgtacctt tttacaaata ctctatacaa ccattttcaa
      361 ctaaaaaatt ttactttccc gaaagaaatg cggttatggc agcaatatca gatgctacag
      421 ttattgtaga agcaagtgaa acaagcggaa ccttaacaca agctagagct tgtattgaaa
      481 ttggaagaaa gctttttata ttaaattcat gctttgaaaa tggcttgaaa tggccatata
      541 cttacgaaaa aaaaggtgca attagggtta aaaaaattga agatattctg gataatttat
      601 gaagcctatt aaagttgatt tggacataca tagcattcct tatctgaatt ctgatgacgc
      661 ttgttattat tttttggatt ataagccaaa ttctggcttt gaggctaatt cattagtatt
      721 taactttaaa aaagatttat tatttaaaaa tcatccatct tggtattata gaaatgaagc
      781 tattaaagaa tttgcaaaaa tgataaataa tgcgttttta aatataaata aaaacatatt
      841 caatattatt ccaatgccca catcaaagcc aaaaaattca acagaattta acaatagact
      901 aatgcaaact atggaggaat tgttaaaatt ggataatagt tataaaatat ttgattgttt
      961 tgatgttcaa aataatctag tgccagcaca ctataatggt tatagaaatc ctaatgattt
     1021 aaaacaagaa atattattct atccaccaaa tttttttgat aagaatatag ttttaattga
     1081 tgatgtatta acaactggag gacattttaa agcttgtaaa aatatcttat tggaaaaact
     1141 agatccaaat ataaatatag ttggattatt tttagcgaaa actgaacatt attatcagta
     1201 gatataagta atttaaacta taatcactca ataccccata aaccttttat atccatcgca
     1261 agcaaaaatc tacttatatt tatttttatc gataaatgtc ttttttacat attcgactat
     1321 acctgaagca gcattatcaa aaactccttt agattctcca ccaaataatc caccaggcaa
     1381 aatagcatca tttgaaaatg tagatattgt ttgattgtta tcatcagtta atctgacttc
     1441 tatttttgct ttagcctttc cagccccgaa acttataaaa tatctcaaag ccctattgcc
     1501 ttcatcatag tcagatattt tacattctat ttttatatct ttaccatata ttttcttatt
     1561 ttttagtagc tcatttattt tatcattaag ataccgactt tcttcactat tttgctcaca
     1621 ttctgcatat gcattagaaa atttcctatc cgcatctata acatttcttt gcgaaacatt
     1681 attaatttgt gaataagaac aagctgacaa aaacaatata gcaaaactat ataaaattac
     1741 ttttctcatc aaaccaacct ttttaaaaaa ttttattttt attataccac aaatattttt
     1801 taaaaattat ccaaattgta taaattttaa gtttgtttta attatccatt ttgtagaatt
     1861 atttcaacaa aacaaaaagg ataaaaaaat gctagaggtt aaattagatt taagacctga
     1921 tattaaaaaa atgctagaaa tagcctttga aagaaattat tcaaaaagtt acacttcttt
     1981 ggaagagttt ttagctaatg ttcttcataa tgcagttaaa aacttaatca ccaaagaagc
     2041 gtttgaaaac aaaggatttg ttatttctct caaagattag gagtttcgtt taaaacttga
     2101 aaatctttgt catttagtct tttttcaagt gttgcgactt tactttctag ctcgctaact
     2161 cttaaaagaa gattattaag ttgagctttt aagctttgta tttcatccat tacatcacct
     2221 tcctagagtg aaagtaatta taactaaaaa aaggataaaa aatgagtttt acagatttgt
     2281 atttcgatag agaagaaaaa agaatttcta actacgcaag agaattggtt aaagatgaat
     2341 tagagagcag agaaaacttt gcggatattt ttaactcttt gcaagaattt aaaaatattt
     2401 tagaagtaag cttggaagat gatgaagata ttgcagcttc tttgcaagcc tatggagatg
     2461 agtttattaa cgatacctat gatttattgg aaaaagtaag gaaatttgag aagaaatacg
     2521 aaaagcttta ttaaaagttt aacaagttct ttttattaaa gaactttctt aagcttttga
     2581 ccgcttggaa attaagcttt gctatcgtgt tgatggtttt gaatagcgga agggttagcg
     2641 agttatccat aaacttggct cgttattatt gtttatagtg ctatttttca aaggttttct
     2701 tgcactttaa aaacgacaga aaactaaggg tttaagaaaa agaaagtata attataaagt
     2761 ttaagtggct aatttctctt ggtggggaag gagctgtttt tgatgataga gaagttttta
     2821 aaaattgctt ttttattgtt agaaatagta aaaaagttga ttgaaataat caatcaacta
     2881 aactaaaaaa ccactaaaat tatagaatag ccttgcttag cctatactta aacaatactc
     2941 acgccaagag agcaaggctc ttggcttttc ttaagctcct ttaatgctta aatggggcaa
     3001 ctttaaaact acttatttta cattcatgag aatttgtctt ttttgttttt tagtttttat
     3061 tttccttttt aataaagaac tcagttgctc cttttaagca ttaatctaaa aggagaaaaa
     3121 atgaaagctt atcacacaaa agaacaagtc atcattaaac ttagcaaaga tgaatataga
     3181 aaagaaatga agctaaataa gtctttaaaa gatgaaaata aatctttaaa aactgaaatt
     3241 tctaatcttg aaaatgaaaa aatagagctt ttaaagcagt taaaagacca aatagaagca
     3301 aatatgaaaa atataaaaga aattagctct ttgcaaaata aaatttatga gcttctttat
     3361 gcaaaagaaa ggtcaaaact atgttcttga tatttaaaaa gaatgaaaaa atcagaaact
     3421 tagaaaaaga agttcaaagg ctaaaaggtg taatagcatt aaaagatact gctataaatg
     3481 aaatgtcatt aaagtttgaa gaagaaatta aaatcaatgt agaacttagt aattttcgta
     3541 taaaaatact tgatgcttta gggcttatag gcgtttttaa aaatgatgat aaagctatta
     3601 aagaagtaaa aagattaaag gagaaagaat tatgaaaaga caaacaaaac cgctaagtat
     3661 aagaattcca ttagaattaa aagaagagtt gcaaaaaata gcagataaag aataccgccc
     3721 tttagcaact caaatagtta aaattttaag cgattatgtt aagaataaaa ataaaactaa
     3781 ttagggtaat cacctttttg ccataatgaa ttttcgcttt cataagtatt aatataatct
     3841 tcaatgattt ttcttatttg taaagccata gggcgatact caagttcgca tatataggcg
     3901 agtttgtttt ttgttacagt atcaagcctt atcgatatta tttctgattt attggtcttt
     3961 tgtttctctt ccaatgtttt cctttttgta ttttattgta attttactaa aaaagttatt
     4021 tttt
//
LOCUS       DBBXRO010000139         3871 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.140, whole genome shotgun sequence.
ACCESSION   DBBXRO010000139 DBBXRO010000000
VERSION     DBBXRO010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.140"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            6..578
                     /locus_tag="ACJFEZ_001661"
     CDS             6..578
                     /locus_tag="ACJFEZ_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HGG0917752.1"
                     /translation="MKIFISFFVLATCLWAKEIAYTDEVVSLYLNKDDTKVTGRLLPT
                     NAFEILKSDKDRVLIKVDGYVNPKAPSVIYFNDSQRIIVAAFSKNTKLNFSQTSAGKN
                     GKWDKVSLEIWADKKDFAKDNKEMLSRAKNLFAENCGICHALHPEKEFTANAWPAVFR
                     SMADRTGIDKKDRWLVIQYLQKNAKDFKAK"
     gene            590..3078
                     /locus_tag="ACJFEZ_001662"
                     /pseudo
     CDS             590..3078
                     /locus_tag="ACJFEZ_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777911.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
     gene            3248..3598
                     /locus_tag="ACJFEZ_001663"
                     /pseudo
     CDS             3248..3598
                     /locus_tag="ACJFEZ_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845970.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3595..3756
                     /locus_tag="ACJFEZ_001664"
     CDS             3595..3756
                     /locus_tag="ACJFEZ_001664"
                     /inference="COORDINATES: protein motif:HMM:NF028509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917753.1"
                     /translation="MIGTDLYNAKDENGIFYVRELYQRALDQGRVCYLSLYKTSTQWR
                     KYNCRKNSI"
BASE COUNT         1401 a          591 c          737 g         1142 t
ORIGIN      
        1 tgacaatgaa aattttcatt tctttttttg tcttggcgac atgtttatgg gctaaggaaa
       61 tagcctatac agatgaagtt gtatcgcttt atcttaacaa agatgatact aaagttacag
      121 gaaggctttt acctacaaat gcttttgaaa ttttaaaaag tgataaagat agggttttaa
      181 taaaagttga tggatatgta aatcccaaag ctccttctgt gatttatttt aacgattccc
      241 aaagaatcat tgttgctgct ttttctaaaa atacaaaact caatttctca caaacaagtg
      301 cgggaaaaaa tggtaaatgg gataaggtga gccttgaaat ttgggcagat aaaaaagatt
      361 ttgctaaaga caataaagaa atgttaagtc gtgcaaaaaa tctttttgct gaaaattgcg
      421 gaatttgcca tgccttacat cctgaaaaag aatttaccgc taatgcttgg cctgctgttt
      481 ttcgctctat ggcagataga acagggattg ataaaaaaga tagatggcta gtaatacaat
      541 atttacaaaa aaacgcaaaa gattttaaag caaaataaaa ggaaaggcta tgttagatag
      601 aagaagattt ttaaaaattg gtgcagcatt aagtacttta ccccttattc cgactttagg
      661 tgcaggaaaa agtgcagaag ctacaaaagt aagtcttgga cttgtaaaaa acggtgaagt
      721 catcacggca gctcagatgg taaaatcatt aaaagtgaac cttgggaaaa aatcactaag
      781 atggataatc ctttgcagca ttacaccgca gatatggttt ataaatctcg cgtaaaatat
      841 ccttatgtac gcaaatccta tcttgaaaac cctgacaatc ctaaacctga acttcgtgga
      901 aaagatgaat ttgttcgtgt aagttatgat gaagctataa aacttatcgc aaaagaactc
      961 aaaaaaacaa gagaagctaa gggtacaagt gctatttttg gtggaagtta tggttggaaa
     1021 tcaagtggta atatgcaaaa tgctagaata ttattacata gatttttaaa tgttacaggt
     1081 ggttttgttg gcgctactgg agactattct acaggggctt ctcagattat tatgccttat
     1141 gtggttggtt ccattgaagt ttatgaacag cgaacctcat gggaaaatat tttagagcat
     1201 tctaaatatg tcgttatttg gggcgctgac ccgatttcta ctttacgcat tgcttggact
     1261 gcatcagaac aaagaggttt ggcttatttt gaaaaactta aagaaaagaa aataaaagtt
     1321 atttgcattg atcctgtaaa aaccgataca gctcaatttt taaatgcaaa atgggtagca
     1381 ccacgcccaa ataccgatgt agctttgatg atgggtatgg caagtcattt gattgctcaa
     1441 aataaagtta attatgaatt tttagaaaat tatactactg gctttgataa atttaaagat
     1501 tatcttgatg gaaaagaaga cggtatcaaa aaagatgtta aatgggcaag caaaatttgt
     1561 ggtatcgatg aaaagatgat taagaattta gctgaaattt tctacgataa tcctactatg
     1621 attatgagtg gttggggtat gcaaagagct cattatggcg agcaaccaca ctggatgctt
     1681 gtaactttag cttctatgat aggacaaatc ggtaccaaag gaggtggttt tgggcttagt
     1741 taccattata gcaatggagg tgtgccaact tgcaaaggtg gggtaatcgg cggaatcaat
     1801 gctgaaagct taggaatttg gaaaaatggc aaatttcaag gtttggctaa atcaaaccaa
     1861 gcaagcggtg gcgcagaatg gcttcaaaat gctgcaagtt attctttccc tgtagcaaga
     1921 atagcagatg ctttacttaa ccctggcaaa accatagatc acaatggtag caaaattact
     1981 tatcctgata ttgattttat ctactgggta ggtggaaatc cgctcgtgca tcatcaagat
     2041 accaatacca atgtaaaagc atggcgaaaa cctcgtactg tagtagttaa tgaaatttat
     2101 tggactccaa cagcgaaaat ggcagatatt gtaatgcctg caacttcatc ttatgaaaga
     2161 gatgacatta ctatgagtgg ggattattct aatatgcata tagtgccaat gaaacaagcc
     2221 gttgaaccgg tgggtgaaag caaagatgat tatataattt ttgctgatat ttgcaaagtt
     2281 tatggtcaaa atgtatacaa tgcttataca gaaaagggca aaaaagcaaa agacttcatc
     2341 aaagaatatt atgatagtgc cttaaaacaa actcaaagct ttggtgaggc ttttgctact
     2401 cctatgccaa attttgaaga attttgggca aaaaacgaac ctattacttt tgaagccact
     2461 gcagaaagct tagaatggac acgtttttca gaatttatag aagatccaat ccttaatgct
     2521 ttaggcacag aatcaggctt gattgaaatt tactctcaaa caatcaaaaa ttacaattat
     2581 gatgattgca aagcgcatcc tacttggttt gaaccgattg aatggcttgg aaatgctacc
     2641 aaagaagcac cttttcatct actcacgaac catccaaaag atcgcttgca ttctcagctt
     2701 tgccacacaa gtttaagaga tacttatgcg ataaaagata gagagccgat tttgataaat
     2761 accaaagatg caaaaaaact tggtgttaaa aatggtgatg ttgtaagagt ctttaataaa
     2821 cgcggagagg tcttagcagg tgtaattata agtgatgata tcatacaagg cgtagtaaga
     2881 ctatgtgaag gcgcttggta tgatcctgac gaaaatgggc tttgcaaatg tggaaatgca
     2941 aatgtcttaa ccatagatat tccaagctca aaacttgcaa atggtaatat agcgcataca
     3001 ggacttgtaa atatagaaaa atttacaggc acacttccag ctcttaatgc ctttagcgct
     3061 ccaaaaggtg ctatttaact ctatcttaaa gaaagtctta ggactttctt tagcttaaaa
     3121 acacataaaa gcaatctaat ccaaaaaatt aaaacatcta aatcaaaatg acaattgttt
     3181 caaatttaat atgaattaaa acctttatag gcaaaatatg cgctcaaaaa tcagttcagg
     3241 agtgtttatg caattatcaa ttcgtaaaaa aatgcttatg ttgggagcca tctgttttat
     3301 ttcaatgttg gcaacttttg caatttttta ttacaacaat ctacaaggaa gtcaaaaaat
     3361 tgcccaaaca acaaaaaatt taatcaacaa ggaaatagac attaaagttg aacttttaac
     3421 caaatcaatg gctattgctt taggggattt aatcaaagat gttgatgatg aaaaagaaaa
     3481 aataaaaatt atcgctaccg caattgaaaa ttttagattt gaagaggatc aaagcggata
     3541 cacttttttg tctatcaaaa aacaaccgtc aaagcccatc ctgttagaaa agacttgatt
     3601 ggcacagatt tatataatgc aaaagatgaa aatggaatct tttatgttcg agaattatac
     3661 caaagagcat tagatcaagg gagggtttgt tacctttcac tttacaaaac ctcaacccaa
     3721 tggagaaaat acaattgcag aaaaaacagc atatagctat ttaatcccta atacagataa
     3781 tttatggatt tccactggtg tatacaaaga cactttagaa ccttatattg atagaaattt
     3841 ggaagaattg ttatcatttt tttctgaagg c
//
LOCUS       DBBXRO010000140         3812 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.141, whole genome shotgun sequence.
ACCESSION   DBBXRO010000140 DBBXRO010000000
VERSION     DBBXRO010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.141"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(20..1042)
                     /gene="selD"
                     /locus_tag="ACJFEZ_001665"
     CDS             complement(20..1042)
                     /gene="selD"
                     /locus_tag="ACJFEZ_001665"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:complement(992..994),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HGG0917754.1"
                     /translation="MEYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQTSPALLSDIG
                     NNEDASVFQISPELALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCHHELNVLQELLQGANDKVQECGGIIVGGHTIESGELFFGLSVTGKVHPKKFI
                     ANNTAKEGDLILLTKPLGTGILSTALKAQMLEEKHLDRMLESMMDLNYKSSQIALRFG
                     VNAMSDVTGFGFLGHLREMLNDSISFTVFKNELPYLEGVKEYFDMGLIPGGAYKNLDF
                     IQEFYPGLNEEDLLLCDPQTSGGLLIAIEEKKALECLKALEDENIKAKIVAKAVAKQD
                     DRFIFS"
     gene            complement(1050..1622)
                     /gene="yedF"
                     /locus_tag="ACJFEZ_001666"
     CDS             complement(1050..1622)
                     /gene="yedF"
                     /locus_tag="ACJFEZ_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HGG0917755.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLTPVVDENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKADKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVFINVDEGHRAHLAMKELEKLGVEIISCGACLEFF
                     GKSKELKIGSIGNAYEILNELCGKAKIITL"
     gene            complement(1733..>3812)
                     /gene="ccaA"
                     /locus_tag="ACJFEZ_001667"
     CDS             complement(1733..>3812)
                     /gene="ccaA"
                     /locus_tag="ACJFEZ_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HGG0917756.1"
                     /translation="LKLIFSVAAVVVIGLVILISLITKQVSQNITKNTEDILASITKE
                     YATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSNFTY
                     LYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIANLQVVQDIL
                     KKAKYGENKVYIGRPIKMNLEGQDFNAVNVAMPIFDRKNQVVGVIGMTLDFSDIATYL
                     LDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDVNPNKGAQETYKAISEGKNGV
                     FDYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGASFIFIFVV
                     LGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGAMGRIINEN
                     IEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVLNRMLDVLQ
                     SKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLVASSNFAKDL
                     ANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADDIKN
                     IVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIEANI
                     NILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQIAAA
                     ILEDVNKKRF"
BASE COUNT         1254 a          706 c          473 g         1379 t
ORIGIN      
        1 agtatataag taacaaaaat taagaaaata taaatctatc atcttgttta gctactgctt
       61 tggcaacaat tttagcttta atattttcat cttctaaagc cttaagacat tctaaagctt
      121 ttttctcttc tatagcgatt aagagtcctc ctgaagtttg aggatcacaa agcagcaaat
      181 cttcctcatt taaaccaggg taaaactctt gaatgaaatc taaattttta taagctccac
      241 caggaatcaa acccatatca aaatattctt tcacaccctc taaataagga agttcatttt
      301 taaaaactgt aaatgaaatg ctatcattta acatctctct taaatgtcct aaaaaaccga
      361 aacctgtaac atcgctcatg gcattaaccc cgaaacgaag tgcaatttga ctggatttat
      421 aatttaaatc catcatgctt tcaagcatac gatctaaatg tttttcttct aacatttgag
      481 cttttaaagc tgtacttaaa atacccgtcc ctagaggctt ggttaaaaga atcaaatccc
      541 cttctttagc ggtattatta gcaataaatt ttttagggtg tacctttcct gttacactaa
      601 gtccaaaaaa aagctcacca ctttctatag tatgtccacc cacgataatg ccaccacatt
      661 cttgaacctt gtcatttgca ccttgtaata attcttgcaa gacatttaat tcatgatgac
      721 aagtatcaaa acccactata tttaaagcat taatcacctc tgcacccata gcaaacacat
      781 cacttaaagc attggctgca gcaatagcac caaaatgata agcactatct actataggtg
      841 tgatgaaatc aagcgtttga actaaggcta attcaggact aatttgaaaa acacttgcgt
      901 cttcattatt gccgatatca ctgagtaaag ctgggcttgt ttgcatgaaa tttaaaattg
      961 ttttaagacc gcccgggctt aatttcgctg ctcaacctgc tgcttttaca aagtgtgtta
     1021 gattctggtt tttgtattcc atattttcct tataaagtga tgatttttgc cttaccacaa
     1081 agctcattta aaatctcata agcattgcca atgcttccta tcttaagctc cttgcttttt
     1141 ccaaaaaatt ctaaacaagc tccacagctt ataatctcaa cacctaattt ttcaagttct
     1201 ttcattgcca agtgagctct atgaccctca tctacattga taaaaacact ttcattgaca
     1261 caaagaattt tacttggagc atgatctaaa ttttttaagg tacttaaaaa tcctacaagt
     1321 aaattttgtc ccaattcacc ctcacccact ttgtcggctt ttaaaaataa aacattataa
     1381 tcgtgaatat ttacttcact agaatcaaaa ttcttttttt gtactttgat gcaaaactct
     1441 tgtgcatttt catctacaac aggggttaaa tttaaagagt taagaaattt tacaacatta
     1501 ttttttgaaa taatagaatt taaaacaatt tctaaaattt cattttcttg aagtttttca
     1561 agagcgtttt ttgtttcaac tataggctga ggacaagata gattccgaca atcaattttc
     1621 attatttttc cttgatatta gctttgaaaa ataatattat tttattactt gttttgtgtt
     1681 taaaaatttt aaataatata gaaaaaattt aaaagctcaa aaatgagctt ttttaaaatc
     1741 tttttttatt cacatcttca agaattgccg cagcaatttg attgacttca tttgttatat
     1801 tattggtgac atttgcaact tcgacatttt ccttagttac agtttcaagt tgtgctatag
     1861 catcgttaat ctgtgtgatt cctgctgttt gttcttttac agattctgct acttcattta
     1921 cgctttgaac aagtatatta atatttgcct cgatttcaga taaggatttt cctgttcttt
     1981 ccgcaagctg tcttacctca tctgcaacaa ctgcaaaacc acgcccatgt tctccagcac
     2041 gtgcagcttc aatagctgca tttaaagcaa gaagattcgt ttgctcagcg atatctttaa
     2101 tcacattgac aatatttttt atatcatcag cttgtgaagc aacctcaact gtttttccac
     2161 ttacattttg catagaagaa ttaatctcct ctacggctgc agccgattgt tctaaagaac
     2221 tcgcttgtgc attagagcca tcagcaagtt tttgcataga attttttaac tcttctgact
     2281 gattggctaa atctttagca aaatttgaag aagctacaag catcttttta atttctttgc
     2341 ctaaaatatt agttgtaatc tcaacttcac ctttagcatt aaatacttct gtactaaaat
     2401 caagagcctt ataactatca aaaactctat taatttcatt catattagaa ccaattttac
     2461 tttgtaaaac atcaagcatc ctattaagaa catttttaag ttctactaat tgaggattta
     2521 taggattttt agtaattctt gcagttaaat tacccttttc gatttctcta gcagtttgca
     2581 ccgattcatc tacagcattt tgatcttgtt ctaaagatat ttgaatcttt tcaatatttt
     2641 catttatgat tcttcccatt gctcctaact catcattagc acgaatttca atagccttag
     2701 gttcaatttt ttcatgattt aaaaaacgga aaaatgattc taaagaacta agaatcacag
     2761 gcaatctaga tgcgacaatt tttcttacgc aataataaac cactcctaaa acaacaaaaa
     2821 taaaaataaa agatgcacca agaataatta attgtaattt ttttaagggt ttaaatactg
     2881 aatatttagg agcagttacc aaaactgccc aagaactatc ttgcacttta aaactattaa
     2941 tcgcagcata agaatcatca ccatcagaag ctatatagtc aaaaactcca ttttttcctt
     3001 cacttatggc cttataagtt tcttgtgcac ctttattagg attgacatct tttaaatttt
     3061 ttaaaactag atttttattt ggatgtatcg ccataaaacc atctgaattt aaaagaactc
     3121 ttaattcacc atcatatttt tgacctttag ggtctaaaag ataagtagca atatctgaaa
     3181 aatctaaagt catgcctatg acacctacaa cttgattttt tcgatcaaaa ataggcatag
     3241 caacatttac agcattaaaa tcttgacctt ctaaattcat cttaatagga cggcctatat
     3301 atactttatt ttccccatat tttgcttttt ttaatatatc ttgcacaact tgcagattag
     3361 ctatttcatc actagcttgt attgctttta ttccgccttt attatccttt tcttcatcag
     3421 cgtaaagcat aacaaatttt ccactttgag tattaaaaaa tttactctct tctttaaagt
     3481 attctggcgg atcaataaga tacaaataag taaaattaga ataagcacta ttatcaaaag
     3541 tattggttat aatatttgtt atattgtcta tatctaaatc ttctttagag gttgatctaa
     3601 acatttctgt taaagtacct gaaatacttt tatttaaagc gatcatttcc ccaaaaattc
     3661 cttgagtttg agtagcatat tctttcgtga tagaagcaag aatatcttct gtatttttgg
     3721 taatattttg acttacttgt tttgtgatta atgaaattaa aataacaagt ccaataacaa
     3781 caacagctgc cacagaaaaa ataagtttta aa
//
LOCUS       DBBXRO010000141         3804 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.142, whole genome shotgun sequence.
ACCESSION   DBBXRO010000141 DBBXRO010000000
VERSION     DBBXRO010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3804
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.142"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            40..137
                     /gene="ffs"
                     /locus_tag="ACJFEZ_001668"
     ncRNA           40..137
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACJFEZ_001668"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            285..2093
                     /locus_tag="ACJFEZ_001669"
     CDS             285..2093
                     /locus_tag="ACJFEZ_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HGG0917757.1"
                     /translation="MEKKKIPMLILCILIALAFWIIPTPIGLEENSWHFLGLFIAVIM
                     AVILQVMPLGAVCMIAIAIVALSGITTTQSSVRATHIKTLEAIVLKDNSNIYKVTMEQ
                     KSQASILENLIKANVAKNLEPKVNEILKSNSNIEYQIDSLNKLYAKATSKVAAQKLID
                     ESKIAALNSLALEFMSQKDIDEKVNTAISSLKSKTGIKDALSGFSNSLIWLIVVSIIV
                     ARGVIKTGLGERLAYYFISIFGKKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIV
                     QAISRSFKSTPEDGTQNKIGTYLSLVNFQANPISSAMFITATAPNPLVVDLVAQATNL
                     EVHLTWGQWALGMFLPGIAAMLLMPLVIYFLSPPEIKSTPNAKIFAKGKLEELGAMKG
                     SEKIMLGVFVLLLLLWAGALGFLFGISLDATSVALLGLSLVLVSGVLTFGEVLAEKAA
                     WNTLVWFSALVMMATLLGKLGVTQFLAEALGEFASAMGLGEISIMIFLSLAFLYTHYF
                     FASTTAHISAMFFVFYSAGLALGAPPLLYAFIMIASGNVMMALTHYATGTAPVIFGTG
                     YVSLKKWWSVGFVISVIDITVMILVGLVWWKFLGFY"
     gene            complement(2128..3144)
                     /gene="mnmA"
                     /locus_tag="ACJFEZ_001670"
     CDS             complement(2128..3144)
                     /gene="mnmA"
                     /locus_tag="ACJFEZ_001670"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HGG0917758.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLICTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGDKVIAS
                     GFIE"
     gene            complement(3144..3749)
                     /locus_tag="ACJFEZ_001671"
     CDS             complement(3144..3749)
                     /locus_tag="ACJFEZ_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HGG0917759.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDSFYYQEAKKLA
                     SLCVENGFCVVSGGGGGIMRAANAGAAKCKNDANFIKSVGFNILLPFEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEVLTLKQLGFKSNVPIILLGSEFW
                     QGFDEFVRNSLLKLEVISKGDELKYEITDDLDYIINTLKEL"
BASE COUNT         1123 a          646 c          653 g         1382 t
ORIGIN      
        1 acacttttta agtatattat gatataattt ctttgccttt tcttagacct gtgcaatgct
       61 atttttaagc accgcttcag ggtgggaaca cagcagagca cttgatttta gtgtgtgccg
      121 cagccatctg ggaaagggtt tatttcattt aaacttactt tttatatctc ttaaatattt
      181 ttattttcat atagaatttc aagactttgg taaaaatttt ttaatactta attaagaatt
      241 gttaaattaa aatttaacaa atttaataca ataaaggagc ttaaatggag aaaaagaaaa
      301 tccccatgct tatactgtgt atccttattg cgcttgcatt ttggataatc cctactccta
      361 taggtttaga ggagaattct tggcattttc ttggactttt tattgcggtg attatggcgg
      421 ttatcttaca ggtaatgcct ttaggagctg tgtgtatgat agctattgct attgtggcac
      481 taagtggaat cacgaccact caaagttctg ttcgtgctac acatatcaaa actcttgaag
      541 ccattgtttt aaaagataat tctaatatct ataaagttac catggagcaa aaatcacaag
      601 ctagtatttt ggaaaatctc atcaaagcaa atgtggctaa aaatttagaa cctaaggtaa
      661 atgagatttt aaaatctaat tcaaacatag aatatcaaat agatagtcta aataaacttt
      721 atgcaaaagc gacttcaaaa gttgctgcgc aaaagcttat tgatgagagc aagatcgcgg
      781 cattaaactc tttagctctt gaatttatgt ctcaaaaaga tatagatgaa aaagttaata
      841 ctgcaatatc aagtttaaaa tccaaaacag gtattaagga tgctttaagc ggattttcta
      901 attctttaat ttggcttata gtagtttcta tcattgtagc tcgtggagtt ataaaaacag
      961 gacttggaga gcgtttggcg tattatttta tcagtatctt tggtaagaaa actttaggta
     1021 ttgcgtattc tatcgcattt tgcgaaacta tcttagctcc tgtaacccct tcaaatacag
     1081 caagagcggg tgcgataatc aatcctatag ttcaagctat ctcaagaagt tttaaatcta
     1141 ctcctgaaga tggaacacaa aataaaatag gcacctatct ttctttggtg aattttcaag
     1201 ccaatcctat ttcttcggca atgtttatca cagccactgc tccaaatcca ttggttgttg
     1261 atttggtcgc tcaagctaca aatttagaag tgcatttaac ctgggggcaa tgggctttag
     1321 gtatgttttt acctggtata gcggctatgc ttttaatgcc tttggtgatt tattttcttt
     1381 ctccaccaga gattaaatca accccaaatg ctaagatttt tgcaaagggt aagttagaag
     1441 aactgggtgc tatgaagggt agtgaaaaga ttatgctagg tgtttttgta ttgcttttgc
     1501 ttttatgggc aggggctttg ggctttcttt ttggaatttc tcttgatgct acaagtgttg
     1561 ccttgcttgg tctttctttg gttttagtaa gtggagtttt gacttttggt gaggtgttgg
     1621 cagaaaaagc tgcttggaat actttggtat ggttttcagc ccttgtgatg atggcaactt
     1681 tacttggaaa gctcggtgta acgcagtttt tagctgaagc tttgggtgaa tttgcctctg
     1741 ctatgggact tggtgaaatt tctattatga ttttcttaag ccttgccttt ttatatacgc
     1801 attatttctt tgcttcaacc acagcgcata tttcagctat gttttttgta ttttatagtg
     1861 caggacttgc tttaggggct ccaccacttc tttatgcttt tattatgata gcatcaggaa
     1921 atgttatgat ggccttaacg cattatgcaa caggaacagc tccagttatt tttggaacag
     1981 gttatgtaag tcttaaaaaa tggtggtctg taggatttgt tatttcagtg atagatataa
     2041 ccgtaatgat acttgttggc cttgtatggt ggaaattttt gggattttat taaaatctta
     2101 tcaaagcttt taaagctttg ataagtctta ttctataaac ccgcttgcaa tgactttatc
     2161 accatcgtaa aatactgcca tttgcccact tgctaaacca taaacactct cttttaaaga
     2221 aatgcttgcg cttttatcat cacttataat gactttacac ggggtggatt ttgatctata
     2281 gcggattttt acttcgcaat caagctcttt tgcatcgatg aaaagattga tatttttgag
     2341 tttaaattca ttgattttta attcttcttt ggtgccaacg atgatttgat tttgtttagg
     2401 attgatcttt aaaacaaaat gcggtttgtg agccccgcgt acttcaaaac cgcgtctttt
     2461 gcctatggta tagtgcatat agccttcgtg ttttcctaca accttaccgc tactatctag
     2521 cacttctcct ggaattttag tatccataaa ttgatctaaa acttgcacat aagtatcttc
     2581 aacaaagcaa atttcagaac tttctttttg ggttgcaaat gattttaaaa cttctatggt
     2641 agaagcaaat tttttcacat cttctttttt catttcgccc aatggaaaga tgaggtattt
     2701 taaagcttct ttgtcggcac tggctaaaaa atagctttga tccttgcttt catcaacagc
     2761 tgtacaaatg agattgtttt caagtcttgc ataatgccct gtagcaagct tttcacagcc
     2821 taaactttta gcaaattcta aaagttttcc aagtttgata aaacggttac ataaagcgca
     2881 aggatttggt gttttaccct ctttataagt atccacaaaa ggcatgtaaa ctttgttttt
     2941 aaaatcttct tgtaagtcta aaatatgata aggaatttgc aaaaagtttg caactttttc
     3001 tacttttttg atattttctt cgtgataatt gggtttgcca tgaagtttca tataacaacc
     3061 tataacttca tgacctaaat ttttaagttt ataagcagtg actgtgctat cgaccccacc
     3121 gctcatagcg accagaattt tcattagagt tcctttaaag tattgattat ataatctaaa
     3181 tcgtcagtga tttcatactt taactcgtct cctttggaaa tgacttcaag ttttagcaaa
     3241 gaatttctga cgaactcatc aaagccttgc caaaattcac tcccaagcaa gataatagga
     3301 acattgcttt taaatccaag ttgttttagt gtaagtactt cacacaattc atcaagtgtt
     3361 ccaaagccgc ctgggaaaat cacaaaagct agactctttt caataagagc cattttgcgt
     3421 atggctaagc tctcaaaagt tatgttatat tctacaaaat cgtttaattt ttgctcaaaa
     3481 ggcaaaagta tattaaaacc taccgatttt ataaaatttg catcgttttt acatttagca
     3541 gcgcctgcat tagctgcacg cataatgcct ccacctccgc cgctaacgac acaaaagcca
     3601 ttttctacac ataaactagc taattttttg gcttcttgat aataaaaact atcttctttt
     3661 aatcttgcag aaccaaaaaa agttacggca ttttttaggt ttggtatgtt agcaaatttt
     3721 tctaaatctt ggcttatttt ttcattcatt tttcaacctt tagttaaaat aaattccatt
     3781 ctagctaaaa atttataata agtt
//
LOCUS       DBBXRO010000142         3782 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.143, whole genome shotgun sequence.
ACCESSION   DBBXRO010000142 DBBXRO010000000
VERSION     DBBXRO010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.143"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(8..394)
                     /locus_tag="ACJFEZ_001672"
     CDS             complement(8..394)
                     /locus_tag="ACJFEZ_001672"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917760.1"
                     /translation="MDDLNCDFIHFFNTIYIKLIELCGSNLERFTPLKDLKKLGFHII
                     CSKGNRGALANLLLFNEISSFFKIIEKYDYNFKECQTVYDLLYEKRNLLNIIDTIGIE
                     LCNKICKNLKEDDENFYHPKIFKKAL"
     gene            complement(442..714)
                     /locus_tag="ACJFEZ_001673"
     CDS             complement(442..714)
                     /locus_tag="ACJFEZ_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HGG0917761.1"
                     /translation="MKEINIIDFGLMGKQISALFYLLGYEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINIYQHIEDLKNSLTIESLNEDLNLKKEIM"
     gene            complement(787..1014)
                     /locus_tag="ACJFEZ_001674"
     CDS             complement(787..1014)
                     /locus_tag="ACJFEZ_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HGG0917762.1"
                     /translation="MCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLN
                     GNSSIGKNCFLATRVSLLPCVNLEDNCIVSR"
     gene            complement(999..1328)
                     /locus_tag="ACJFEZ_001675"
     CDS             complement(999..1328)
                     /locus_tag="ACJFEZ_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HGG0917763.1"
                     /translation="MKNVIIIGAGGFARELYSYLKDANYEIIGYIDIQENNFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKILVKLSKKSCNFITFMHPQSFVSKEAKIGQ
                     GVWCVLL"
     gene            complement(1437..2591)
                     /gene="legC"
                     /locus_tag="ACJFEZ_001676"
     CDS             complement(1437..2591)
                     /gene="legC"
                     /locus_tag="ACJFEZ_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HGG0917764.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILFAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKNENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSNELINTKKLEKRLINLPSSVRIANKKE"
     gene            complement(2584..3555)
                     /gene="legB"
                     /locus_tag="ACJFEZ_001677"
     CDS             complement(2584..3555)
                     /gene="legB"
                     /locus_tag="ACJFEZ_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HGG0917765.1"
                     /translation="MRNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            complement(3552..>3782)
                     /locus_tag="ACJFEZ_001678"
     CDS             complement(3552..>3782)
                     /locus_tag="ACJFEZ_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HGG0917766.1"
                     /translation="LIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHI
                     KAQENALIKNILPLEEKLKERKLDKWMERVRK"
BASE COUNT         1187 a          616 c          527 g         1452 t
ORIGIN      
        1 ttccttttta taaggccttt ttaaagattt ttggatggta aaaattttca tcatcttctt
       61 ttaaattctt acaaatttta ttacaaagtt ctatgcctat agtgtcgata atatttaaca
      121 aatttctttt ttcataaagc aaatcataaa ctgtttgaca ttctttgaaa ttataatcgt
      181 atttttctat aattttaaaa aatgatgaaa tttcattgaa caaaagcaaa tttgctaaag
      241 ctcctcgatt gcctttactg caaatgatat gaaatcctaa ttttttaaga tctttcaatg
      301 gggtaaatcg ttctaaatta gaaccacaaa gttctattaa tttgatataa atagtattga
      361 aaaaatgtat aaaatcgcag tttaaatcat ccatactcaa agaacttgaa ttcgaaaaac
      421 tatattatta tctctaagaa tttacatgat ttcttttttt aaatttaaat cttcatttaa
      481 gctttctata gtcaagctat ttttaagatc ttctatatgt tggtaaatgt ttatttttcc
      541 ggcgttaaaa ttagaaaaat ctatttttct ttgtagaagt tttatttgtt tttcaaattc
      601 gtatatattg agcttgcttt tattataaac acctatttca tagcctaata aataaaataa
      661 agcacttatt tgcttaccca ttaaaccaaa gtctatgata ttaatttctt tcattgtttt
      721 ttccttgttt taattatatt tttatgaaaa ataagttgat tggatgtgta gtttttgcta
      781 ataatactac ctgcttacta tgcagttatc ttctaagttt acgcaaggca acaggctaac
      841 tctagtagct aaaaaacaat tttttcctat gcttgaattt ccattaagtg tagcataagg
      901 gcttaaaata cttccttctc ctaccttaca atcatgagct atgcttgaat aaatattaca
      961 aagtacaaaa tctcctatat ttgaattagc attaatggtt acaaaaggac acaccatacc
     1021 ccttgtccta ttttagcttc ttttgaaaca aaagattgag gatgcataaa agtgataaaa
     1081 ttacatgatt tttttgaaag ttttacaagg attttttttc ttaaattgat ttgtcctaca
     1141 cctaaagcaa aagatgcttt ttgaatcaac tttttatcga aattatcttc attgcctaga
     1201 tattttaagt caaaaaaatt attttcttgt atatcaatat agcctataat ttcgtaattt
     1261 gcatctttta aataagaata aagctctcta gcaaagccac ccgctcctat gatgatgaca
     1321 tttttcacgc acttctccta aaagaagaag taaaaaaatc aaatcccccc ccccgctatt
     1381 ctcatatttt ttcttattaa atttttttaa tgctttgaat taaattttgc aacgcatcat
     1441 tcctttttat ttgctattct aacgctacta ggtaaattaa tcaagcgttt ttctaatttt
     1501 ttagtgttta taagctcatt gctttgacag ttttgaaaag cttttaaact cggtaagctt
     1561 ttccatacag gacggacgaa aatattattt ttcaagcatt cttctaaaaa aatatttctt
     1621 aaattttcat ttttaaaaag caaggtattg agccaaaaat tgcttttttc attgcttttt
     1681 tcatcgataa atttacattt atcgtgattt ttaaaaaaat ccttgtaaat tttagcaagt
     1741 tctcttttgt tttctaaaaa aagttctaaa ttttcaagtc ctgcaaacaa gattgctgcg
     1801 tttatattgc aaagacggta attataagct atcctatcat gatcgtattc gtaaggatgg
     1861 gggattttag ctgtggtgct aaggtgtctt gcaagtttgg ctaaattttc atcatcactt
     1921 aatatcgccc caccgcatcc acctgtgatg attttattgc cattaaagct taaaattcca
     1981 cactttccaa aagtgcctaa ggccttgttt tcataggtgc ttcctaaggc ttctgcagca
     2041 tcttcaatta aaaggatgtg gtatttttca caaagctctt tgatggcttt tatatgagcg
     2101 cttaaaccaa aggtgtgcat aataacacaa gctttgatgg gtttgtgtgt ggttttgtta
     2161 tagctaagat tatctttttg ataagtttga ttttctaaaa aatgctctaa agccttagga
     2221 cttaaactta gagtgttttc atctatatct aaaaaaacgg gttttgcacc tgtataagcg
     2281 atagcattgg ccgtagcgac aaagcttatg ctttgagtga tgacttcgca gttttcatcg
     2341 ataccattag ctagtaaagc gatatgaagg gctgctgtgc ctgtatttgt agcgataaca
     2401 aagcgtgctt tggttttttc ttttaaagct tcttcaaaac gcgttacaaa ttctcccacg
     2461 cttgaaacaa aaccgctatc aatgcactct aaaagatatt ttttctcatt gcctataaaa
     2521 caaggctcat gtagggcgat attttcttta ttaaaaagac tttttataaa agaaatttct
     2581 ttttcaaaca ttataaagct cacttttata attttctaaa ttttctttaa aatactctat
     2641 gctttgtctc aagccttctt ctagacttat tttgctttgc caatttgtag cttttttaag
     2701 cttgtttgca tcgcaacaaa gtctaaaaac ttcgctattt ttaggacgca atctttgttc
     2761 atcttggatg atttttactt tagaatctaa aattttttgt atgagatcaa gtacttcttg
     2821 catggagtat tccactcctg agcctatatt ataaacttct ccaaaatgtt ttaaatttaa
     2881 aagagagata aaaccctcgc aagtatctag cacaaaattt aaatcccttt tagggcttaa
     2941 atctcctagt ttgatttcct ttgctccact taaaatttgt gtgatgatgg taggtatgat
     3001 agcccttgcg ctttgtcttg gtccataggt gttaaaaggg cgtgcaatat tgacatttaa
     3061 attaaaagaa ttataataac tcagcgccat catatctgca gcgattttgc ttgcagaata
     3121 agggctttga ggttgtaaag ggtgtttttc atcgataggt acataaaagg ctgtgccata
     3181 aacttcgctt gttgaggtgt ggataaaatg tgaaatctcg ttttttttag ctgcttcgag
     3241 catatttaaa gtgccattga cattggtatc cacatagctt tgtggggctg tgtaggagta
     3301 ggggatagcg attaaagcgc caagatgaaa gatcgcatct atatttttgg tgattttttc
     3361 gcaaaaaaaa ctatctctta aatccccact tataacttcc atgtctttta aaaaaggact
     3421 tttttctaaa tgtccccaaa aattaaaaga attatactga cttaaagctc tgactttaaa
     3481 accttttttg accaaacttt cacaaagatg agaacctata aaaccatcag cacctgtaac
     3541 taaaatattt ctcactttct caccctttcc atccatttat ctaattttct ttctttaagt
     3601 ttttcttcta aaggaagtat attttttatc aaagcatttt cttgtgcttt aatatgtcca
     3661 taaactaatt ccataaattc taaatgttct tttatccaaa gaatactttt attaaaagca
     3721 tcttctttgg ttttaggatt taaaacataa attctagcaa gattaagttc aaattggatt
     3781 ag
//
LOCUS       DBBXRO010000143         3767 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.144, whole genome shotgun sequence.
ACCESSION   DBBXRO010000143 DBBXRO010000000
VERSION     DBBXRO010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3767
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.144"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(7..1644)
                     /locus_tag="ACJFEZ_001679"
     CDS             complement(7..1644)
                     /locus_tag="ACJFEZ_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002803230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0917767.1"
                     /translation="MNRLGISARLYFSFALIIFIMLFIAVFSIAKVNFLDKTLTTATG
                     ENALISRQAINFRGSIHDRSILIRDVVLVQDQEDLRKTLAQIQKLEKDYEEAELILND
                     IVAKGGGDSNVRSMMEDIAKTKKNTVQIYQKIIDAVVKENDIQSATKMVLDSARPEFI
                     LWLAQTNKLIDYKELANQELTQIALLESKSFQFIMMSIIIIALIISMVIAYLIVRYIK
                     KSVGGEPRDVNRIITEVANGNLTQPIHTEYKQSILYSISRMQNQLRNIVQKMITISNE
                     LNHKADLVVGRISETEKAVIFQGETSRESALKIREISQKTQNVSKMALETEENSKNTT
                     QVCQNNKKYAEDTASQMEYIASNSSRVSQQIALLSEHAKNIGTSTELISEITDQTNLL
                     ALNAAIEAARAGDVGRGFAVVADEIRKLAEKTGGATDQIAIINKQIQEETIATVGVIE
                     ESIPLISQGKSLSEEVRDSVDLIYKQANDSLFKAQEVNQEVAAQVKLMEEIEEKIITV
                     ADISSKTQQAVSENKNAMTELKNISDNLQAEIAIFKL"
     gene            complement(1711..2478)
                     /locus_tag="ACJFEZ_001680"
     CDS             complement(1711..2478)
                     /locus_tag="ACJFEZ_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type cleavage/methylation
                     domain-containing protein"
                     /protein_id="HGG0917768.1"
                     /translation="MKKFIKSKDTSDAFTLFELVLVVLILGLVISIAQINLKQDRLMQ
                     GAKQILNDIRYVRTLAMTQESFRDLELAVAKREWYKSRWQLYFINSAATNYEQTYTIF
                     LDKNGDGNANLGKTEINIDREIAVDIINPKKLMNSGQSGVIDKSDSKTTQRFNIFKKF
                     GIKKVEFKGSCRGSTRIVFDERGRLYSPLRTSQGVYDKNLAKTNQDCVIRLSSIQANQ
                     ICIIVNPLSGFAYIPKFQDFNKQMIMINGVLSQCSKI"
     gene            complement(2447..3670)
                     /locus_tag="ACJFEZ_001681"
     CDS             complement(2447..3670)
                     /locus_tag="ACJFEZ_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HGG0917769.1"
                     /translation="MEKIKNYKLIILLLAFDLLALLYGISTLSISVDEAKIYFEEKGS
                     FLFFNHSLLYYLTHFGTFVFGQNDFGLRIPILFFHFLSCILLYILALKYTKTHFDSFL
                     SLLLFVLLPGTVASALLVNEASIVIFLTLAIICAYEYEKKWIFYPLLILALFVDKSFN
                     ILFLTFFFFGIYKRNSFLLTLALVLFGLSISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFIYFFYVVYRLTFKEQKSLLWFLMSVTFIFCSLLSLRQKLYLEDFLPFCVICTPLL
                     IKTLMASYRVRLPQFRLRYKIFIECSIIFLLFCYFVIIGNQILYYFVSDPKYNFANNY
                     HLSKELSKELKKQEIFKLRVGTSLQPRLKFYGIEDSNTFYLKSIKNKDQLDKNKKNIT
                     IKLGKFEKIYQIQRY"
BASE COUNT         1330 a          632 c          466 g         1339 t
ORIGIN      
        1 aggtgcttag agcttgaaaa tagctatttc agcttgaaga ttatccgaaa tattttttag
       61 ttctgtcatt gcatttttat tttcactaac cgcttgttga gttttagaag aaatatctgc
      121 cactgttata attttttctt caatttcttc cattaatttt acttgggcgg ctacctcttg
      181 atttacctct tgtgctttaa aaagactgtc attagcttgt ttgtagatta aatccacact
      241 atctcttacc tcttcactta aacttttacc ttgagaaatc aatggtatag actcttctat
      301 aacgcctact gttgctatcg tttcttcttg aatttgtttg ttaattatag caatttgatc
      361 tgttgccccg cctgtttttt cagccaattt acgaatttca tcagcaacga cggcaaaacc
      421 tctacctaca tctcccgctc tagcagcttc tatggctgcg tttagagcaa gtaaattagt
      481 ttgatctgta atctcgctaa taagttctgt acttgttcct atattcttag catgttcgct
      541 aagcaaggca atttgctgag aaactctaga agaattgctt gcgatatatt ccatttgaga
      601 agctgtatcc tcggcatatt ttttattatt ctgacaaact tgagtggtat tttttgaatt
      661 ttcttctgtt tctagagcca ttttggaaac attttgtgtt ttttgactga tttctcgaat
      721 tttaagagca gattctctag aagtttcgcc ttgaaaaatc actgcctttt cagtttcact
      781 tatacgacct accaccaaat cagctttgtg gtttaactca ttagaaatag taatcatttt
      841 ttggactata tttcgtaatt gattttgcat tctagaaata gaataaagta tactttgttt
      901 atattctgta tgaattggct gtgttaaatt tccattagca acttcggtga taattctatt
      961 tacatctctt ggttcaccac ctacggattt tttaatatat ctcactatca aataagcaat
     1021 aaccatagaa ataattaaag caattataat gatactcatc atgataaatt gaaaagattt
     1081 actttctaaa agtgctattt gagttaattc ttgattggct aactctttat aatcaatcaa
     1141 tttatttgtt tgagctaacc ataaaataaa ttctggtcta gcagaatcta aaaccatttt
     1201 agttgctgat tgaatatcat tttctttcac cactgcgtca ataatctttt gataaatttg
     1261 cacggtattt ttcttagttt ttgcaatatc ctccatcata gagcgtacat ttgaatcacc
     1321 accaccctta gctacaatat catttaaaat aagctcagct tcttcataat ctttttccaa
     1381 tttttgtatt tgagctaaag tttttcttaa gtcctcctga tcttgtacta aaacgacatc
     1441 acgaattaaa attgatctat catggatact tcccctaaaa ttaatcgctt gacgagaaat
     1501 caaagcattt tcccctgttg ctgttgtaag agttttatct aaaaaattca ctttagctat
     1561 tgaaaaaaca gctataaaca gcataataaa aataatcaaa gcaaaactga aatacaatct
     1621 tgctgaaatt cctaatcgat tcattatttt ctcctttgtt taatatttgc attcaaatta
     1681 tagcaaattt atattaaaaa ttaaagcatt ctaaatttta gaacattgag aaagtacacc
     1741 atttatcatt atcatttgct tgttaaaatc ttgaaattta ggtatgtaag caaaaccact
     1801 aagcggattg actataatgc aaatttgatt tgcctgtatt gagcttaagc gtatgacaca
     1861 gtcttgatta gttttagcta aatttttatc ataaacacct tgagaagttc gcaaaggaga
     1921 atataatctt cctctttcat caaaaactat ccttgtagaa cccctacacg aacctttaaa
     1981 ttctactttt tttataccaa attttttaaa aatattaaat ctttgagtag tcttactatc
     2041 gctcttatca ataactccac tttgtcctga attcattaat tttttggggt ttataatatc
     2101 tacagcaatt tcacgatcaa tattgatttc agtttttcct aaattagcgt ttccatcacc
     2161 atttttatct aaaaatatcg tataagtttg ctcataattt gttgctgctg aattgataaa
     2221 atataattgc catctacttt tataccactc tctttttgcc actgctaatt ccaaatccct
     2281 aaaactctct tgagtcattg ctaaagttct tacatagcgt atgtcattaa gaatttgctt
     2341 tgcaccttgc atgagtctat cttgttttag attgatttgt gctatggaaa tcacaaggcc
     2401 taagattaaa acaactaaaa ctagctcaaa aagcgtaaaa gcatcactag tatctttgga
     2461 tttgataaat tttttcaaat tttcctagct ttattgtaat atttttttta tttttatcaa
     2521 gctggtcttt atttttaata ctttttagat aaaaagtatt actatcttca ataccataga
     2581 atttcaatct tggctgcaaa gatgtgccaa ctcttaattt aaaaatttct tgttttttaa
     2641 gctctttgct taattcttta gaaaggtgat agttattagc aaaattatat tttggatcag
     2701 aaacaaaata atataaaatt tgatttccta tgataacaaa ataacaaaat agtaaaaaaa
     2761 taatagagca ttctataaaa attttatatc ttaatctaaa ttgcggtaaa cgcaccctat
     2821 aacttgccat caaggtttta ataagtagcg gagtgcaaat cacacaaaat ggcaaaaaat
     2881 cctccaaata aagcttttgc ctcaaagaaa gcaaggaaca aaaaataaag gttacgctca
     2941 ttaaaaacca tagtaaactt ttttgctctt taaaagttaa acgataaact acataaaaaa
     3001 aataaataaa aacaagcggc gaaaaacaag cggcgaaaat tcccaaagta tccaaaaaat
     3061 atcctcttgg acgcccacct gtatcaaaac cataaaagct tatgctcaaa ccaaaaagta
     3121 caagggccaa agtcaataaa aaagaatttc ttttataaat tccaaaaaag aaaaaggtta
     3181 aaaataaaat attaaaagac ttatctacaa ataaagctaa aatcaaaagc ggataaaaaa
     3241 tccatttttt ttcatattca tacgcacaaa ttatagctag cgttaaaaaa atcactatag
     3301 aggcttcatt taccaacaaa gcacttgcaa ccgttcctgg caacaataca aaaagcaaaa
     3361 gagataagaa gctatcaaaa tgagtttttg tatattttaa agccaaaata taaagtaaaa
     3421 tacaacttaa aaaatgaaaa aataaaatag gaattcttaa accaaagtca ttttgtccaa
     3481 aaacaaaagt tccaaaatgt gtgagataat aaagcaaact atgattaaaa aaaagaaaac
     3541 ttcctttttc ttcaaaataa attttagcct catcaacact aatgctaagg gttgaaattc
     3601 cataaagcaa agcaagtaaa tcaaaagcaa gtaaaagaat aataagctta taatttttga
     3661 ttttttccat aaatttgatt ttacaaaatt aaacttaaaa tatcaactga tgtaaatttc
     3721 aaaaaataat cccatgccta atgtataaaa taaaaatatt tttataa
//
LOCUS       DBBXRO010000144         3757 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.145, whole genome shotgun sequence.
ACCESSION   DBBXRO010000144 DBBXRO010000000
VERSION     DBBXRO010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.145"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            108..815
                     /gene="ubiE"
                     /locus_tag="ACJFEZ_001682"
     CDS             108..815
                     /gene="ubiE"
                     /locus_tag="ACJFEZ_001682"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HGG0917770.1"
                     /translation="MQKQDKIIKMFNEIAPTYDKANRILSFGVDVSWRKFACKRVLKL
                     YQKDNLNIVDVACGTGDMIEIWQESAKKLNKNIAHIKGIDPSEGMLNIAKQKFPNIEF
                     IEAGAQELPLQSESVDIVSISYGIRNVVERKKALREFSRVLKQDGIFVVLEFTKREKG
                     GFVASCRDFYLKNILPSLGGMISKNKSAYEYLPNSIEGFLSKEEFIAELKQVGFEMLE
                     FKSFSFGVSSMFIAKKV"
     gene            complement(812..2305)
                     /locus_tag="ACJFEZ_001683"
     CDS             complement(812..2305)
                     /locus_tag="ACJFEZ_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HGG0917771.1"
                     /translation="MDTWMYLMQGFSIALDPYNILIALIGCFIGTIVGMLPGLGPING
                     VAILLPLAFAMNLPAESAIILLATVYMGCEYGGRISSILLGIPGDAAAIMTTLDGHPL
                     AKKGQAGKALSISALSSFIGSFIAICGIILFAPLIAQWSLKFGPAEYFALIVFGLATL
                     GSMLAQKPIRSFLSALIGLFLTTIGIDGNTGVYRFTFDSPHLYDGISFVVLVMGLFSV
                     SEIFLMLEHTQTSQNIINKTGKILVNIKEFFFCFWTIIRSSIIGFFVGVLPGAGATIA
                     SAITYMSEKKIAGEKGKFGQGDLKGVAAPEAANNASACGSFIPMLTLGLPGSGTTAVM
                     MGALTLYNITPGPTMFTDQVNIVWGLIASLLFANVILLLMNLPLVGIFVKILSIPMWS
                     LAPIIAIVSIIGVYSINSTDFDIILILIIGILGYFLRKLEFPMAPLILGFVLGEQLET
                     NLRRALSISNGDFSILWSGIIAQSLLIGAVLIILIPLLIKKLRKSKF"
     gene            complement(2319..2762)
                     /locus_tag="ACJFEZ_001684"
     CDS             complement(2319..2762)
                     /locus_tag="ACJFEZ_001684"
                     /inference="COORDINATES: protein motif:HMM:NF018979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HGG0917772.1"
                     /translation="MSSIRIVAGILLVISLIGIYIGWNIHSDFNYEPLGPRPFPVGTL
                     ILIALCSIFLVFFSEDTKVKWGDFILWKKLIVLTLAFLIYALFFEFLGFIICTIFLIF
                     TITLLFGATLIKAIVFSISSSIILYYLFNTLLQITLPFGFIFDNF"
     gene            complement(2767..3732)
                     /locus_tag="ACJFEZ_001685"
     CDS             complement(2767..3732)
                     /locus_tag="ACJFEZ_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bug family tripartite tricarboxylate transporter
                     substrate binding protein"
                     /protein_id="HGG0917773.1"
                     /translation="MKLKIFYSVLIFGFSLTFAKEPNRPECIAPAQPGGGFDLTCKLI
                     QVGMLKANIISTPMRVTYMPGGVGVVAYNTMVNNRSKDGNVVVAFSSGTLLNIATGKH
                     GKYNENNVKWLASAGVDYGMIAVKSDSPYKNLEDLINALHKDPNSISIGAGGSIGGQD
                     WMQTALLAKTINIDVKKIRYVAFEGGGDALTSLLGNHIDVISAGIAELVPQIETGTIR
                     VLAIFSPKRLPGTLANIPTAKELGYEVEWPVIRAYYMGAKVSDEAYNWWLDAFDKFQQ
                     TQEYKDQLKQRSLFEFDKKGKELEDFVKKQTDQYRILAKEFDLIK"
BASE COUNT         1386 a          621 c          604 g         1146 t
ORIGIN      
        1 tgcgatcttg aaaaaaagac gcttttaaaa ttaaccaaga aaaaagaaaa acttggaaaa
       61 ttaatccata aagcaagtaa gaaattgaaa atttataaag gatattaatg caaaagcaag
      121 ataaaatcat aaaaatgttt aatgaaatag ctccgaccta tgataaggct aatagaattt
      181 tgagttttgg tgttgatgta agttggcgta aatttgcttg taaaagagtt ttaaagcttt
      241 accaaaagga taatttaaac atagttgacg tggcttgtgg cacaggagat atgatagaaa
      301 tttggcaaga aagtgcgaaa aaattaaata aaaatatagc ccacatcaaa ggtattgatc
      361 caagtgaggg tatgttaaat atagcaaaac aaaaattccc aaatatcgaa tttatagaag
      421 ctggagcgca agaattgcct ttgcaaagtg aaagtgttga tatcgtaagt ataagctatg
      481 ggatacgcaa tgtagtggag agaaaaaaag ccttgagaga attttcaaga gtgcttaaac
      541 aagatggaat ttttgtagtt ttagaattta ctaaaagaga aaaaggaggt tttgtagcct
      601 cttgtaggga tttttatctt aaaaatattt taccaagctt gggaggaatg ataagcaaaa
      661 ataaaagtgc atacgaatac ttgcctaatt ctatagaagg ttttttaagt aaagaggaat
      721 ttatcgccga acttaaacag gtaggttttg aaatgcttga atttaaaagt tttagtttcg
      781 gcgtaagttc tatgtttata gctaagaaag tctaaaattt agactttctt agctttttta
      841 ttaaaagggg tattagtata attagcacag ctcctatcag taaactttga gctatgatcc
      901 cactccaaag tattgaaaaa tctccattgc tgatagataa agctcttctt agattggttt
      961 ctaattgttc tcctaataca aaaccgagta taagtggagc cattggaaat tcaagttttc
     1021 ttaaaaaata gcctaaaata ccaataatta agattaaaat gatatcaaaa tcagtactat
     1081 tgatagaata aacacctata attgaaacaa ttgctataat tggagccaag ctccacatag
     1141 gtatgcttaa aatttttacg aaaattccta ccaagggcaa attcattaaa agtaaaatta
     1201 catttgcaaa taacaaggaa gctataagtc cccacactat atttacttga tcagtaaaca
     1261 ttgtaggacc tggagtaata ttataaagtg ttaatgcgcc catcataacc gcagttgttc
     1321 ctgaacctgg aagaccaagt gttaacattg ggataaaaga accacaggct gaagcattat
     1381 tagctgcttc aggggctgcc acacctttta aatctccttg gccgaattta cccttttcac
     1441 cggctatttt tttctcactc atataagtaa tggcgctagc tatagttgct ccagcacccg
     1501 gtaaaactcc tacaaaaaat cctataatag aggatcttat aatggtccaa aagcaaaaga
     1561 agaattcttt gatatttacc aaaatcttac ctgttttatt gatgatgttt tgacttgttt
     1621 gagtatgctc taacattaga aaaatttcac taacagaaaa aagtcccatt actaaaacaa
     1681 caaaagaaat tccatcatat aaatgtggac tatcaaaagt aaagcgataa acacctgtat
     1741 ttccatctat acctatagtg gttaaaaaaa gtcctatcaa agctgataga aaagatctta
     1801 taggtttttg ggctaacata cttcctaaag ttgctaaacc aaagacaata agagcaaaat
     1861 attcagcagg accaaatttt aacgaccatt gtgcaataag tggagcaaaa agtataatac
     1921 cgcaaattgc tataaatgaa ccaataaaag aactaagagc tgagatgcta agagcttttc
     1981 ctgcttgacc ttttttagcc aaaggatgtc catctaaggt tgtcataata gctgctgcat
     2041 ctccgggtat tccaagtagt atggaagaaa ttctacctcc atattcacag cccatataaa
     2101 ccgttgcaag taaaataatt gcggattctg caggtaaatt cattgcaaaa gctagaggaa
     2161 gtaaaatggc tactccatta atgggtccaa gtcctggaag catacctaca atagtaccta
     2221 taaaacaacc gattaaggct ataagaatat tataaggatc taaggctatg ctaaatcctt
     2281 gcattaaata catccaagta tccataaatt tcctttaatt aaaaattatc aaatataaaa
     2341 ccaaacggca aagtaatttg caataaagta ttaaagagat agtataaaat aatactactt
     2401 gagatagaaa aaacaatagc tttaattaaa gttgccccaa aaagtaaagt tattgtaaaa
     2461 attaaaaaga ttgtgcaaat tataaagcct aaaaactcaa aaaaaagcgc ataaattaaa
     2521 aaagctaaag ttaaaacgat gagctttttc caaagaataa aatcacccca tttaacctta
     2581 gtatcttcag agaaaaaaac aagaaatata gaacaaaggg cgattaaaat taaagtacct
     2641 actggaaaag gacgcggtcc taagggctca taattaaaat ctgaatgtat attccaccct
     2701 atgtaaattc caattaaact tataaccaat aaaattccag cgacaattct tatacttgac
     2761 atgattttac tttataagat cgaattcttt ggctaaaatt ctgtattgat cagtttgttt
     2821 tttgacaaaa tcttctaact ctttaccttt tttatcgaat tcaaatagag atctttgttt
     2881 taattgatct ttatattctt gggtttgttg aaatttatca aatgcatcaa gccaccaatt
     2941 ataagcttcg tctgaaactt ttgcccccat atagtaagct ctaattactg gccattctac
     3001 ctcatagccc aattctttag cggttggaat atttgctaaa gtgcccggaa gtctctttgg
     3061 ggaaaagata gccaatactc taatagttcc tgtttcgatt tgaggtacaa gttcagctat
     3121 gcctgcgcta atcacatcaa tatgatttcc taaaagagaa gttaaagcat ctcctcctcc
     3181 ttcaaaagcc acatagcgta tcttttttac atcgatatta atagtttttg caagtaatgc
     3241 tgtttgcatc cagtcttgtc ctcctattga acctcccgca cctatactaa tagaatttgg
     3301 gtctttatgc aaggcattta ttagatcttc taaattttta taaggagagt ctgatttgac
     3361 ggctatcatt ccgtaatcta cacccgctga agcaagccat ttgacattat tttcattata
     3421 ttttccatgt tttcctgtgg ctatattcag taatgtccca cttgaaaaag ctacaacaac
     3481 attaccatct ttagatctat tattaaccat agtgttataa gctacaacac ctactcctcc
     3541 gggcatatag gtaactctca taggagttga aataatgtta gctttaagca tacctacttg
     3601 aattagctta catgttagat caaaaccgcc tccaggttga gctggggcaa tacactcggg
     3661 acggttaggt tctttagcaa aagttaacga aaaaccaaaa atcaaaacag aataaaaaat
     3721 ttttaatttc atgataaaat cctttaattt ttaagtt
//
LOCUS       DBBXRO010000145         3730 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.146, whole genome shotgun sequence.
ACCESSION   DBBXRO010000145 DBBXRO010000000
VERSION     DBBXRO010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.146"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(42..740)
                     /gene="flgH"
                     /locus_tag="ACJFEZ_001686"
     CDS             complement(42..740)
                     /gene="flgH"
                     /locus_tag="ACJFEZ_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HGG0917774.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     TSPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGGSGLLGTAIDKVNAYSNIGFQTNSANNYQGTGTQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSRYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            842..2347
                     /gene="pta"
                     /locus_tag="ACJFEZ_001687"
     CDS             842..2347
                     /gene="pta"
                     /locus_tag="ACJFEZ_001687"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HGG0917775.1"
                     /translation="MMANLYLMRSRSDELNTLVTTKLLKNYSKIYKNIAIYCPVIYVH
                     RIPVLQGWLEEFDIKQTLKNAYSFTFREAMEEFSKDPHSFFNTILEEYEELNRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINNEDKLIAQKYFDEALDGRDYALINE
                     NFNFEEMHKLQAYDFMTPHRFKYELIKKSVKNKKTVVLPESNDERILKAVEILLKSSV
                     VDLILLGDEQDIKQKADELALDLTAVKILNPLHSEYNEEFATLLYEARKSKGMSLEEA
                     KELVKDRTYFGTLLIHSGKADAMVSGASTTTAETIRPALQIIKTQEGVDSVSGIFFMG
                     LDDKVLAFADCAVNPNPNAEQLATSAYVSAMTAKSFGIEPRIALLSYSSGDSGKGESV
                     DLVKEALRIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGNVNVYIFPDLDAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            2361..3551
                     /locus_tag="ACJFEZ_001688"
     CDS             2361..3551
                     /locus_tag="ACJFEZ_001688"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HGG0917776.1"
                     /translation="MKILVLNSGSSSIKFKFFDDKVVKASGLVEKIGEEKSKVILKNA
                     LNDETFERELPIKNHEHGLQIVNELFKESGILEDLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAFVSARAAQLLGKNKEDLNAISAHLGNGASVCAIEGG
                     KSIDTSMGFTPLEGLVMGTRCGDLDPAILPFISHLKGLTIEEIDTLLNKKSGLYGICG
                     SNDFRDIGAKIEQGDDRARLAFDMFCYRLLKYIGAYFTVLPRTDAIIFTGGIGENAAL
                     VRQKVCERLSHLGVELDIELNNKKASCERMISTANSKVKIFIVPTDEELEIARITEEL
                     INKS"
     gene            3625..>3730
                     /locus_tag="ACJFEZ_001689"
     CDS             3625..>3730
                     /locus_tag="ACJFEZ_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917777.1"
                     /translation="MKKFKDFSCNFLFKISDQPVLLRDLLEANALFNDG"
BASE COUNT         1225 a          523 c          711 g         1271 t
ORIGIN      
        1 aatttaagtc cttattttaa ggacttaaat tataagttta tttaaaaagg ccatatagct
       61 tctatgactt tgcttcccca aggttttcta gtgcttctat ccacttcacc ttcagttttg
      121 taaagaattt ttgcatctgc tatatatcta ctatctatag tattatcttg accgatatca
      181 taaggacgaa tcacaccgct aagttgtatg atttgttttt ctccattgat caaaagctct
      241 cttgaaccct caataaaata attaccatta gacaaaattt taatcacgcg agttgaaatc
      301 gtagtgttaa aactttcatt gcgactttga gtgcctgttc cttggtagtt gttagcacta
      361 ttggtttgaa agcctatatt agaataagca tttactttat cgatcgcagt tccaagtaag
      421 ccacttccac ctgttaaagc tcctcctcct aaattggaag tattggttct acttgtggcc
      481 ttattggctt gagtgctttg agtagtgctt tcttggataa ccacagtaac taaatcattt
      541 acattcattg cttttttatc agagaataaa ggattatcgc cttttccaaa aagcgatcca
      601 ggagaagttt ctacattgtt gctttgttta ggtgcaagct cttctacata agcaggaggt
      661 ttcatagaaa tttgcggatc tactgttgca gaacatccaa aaaatgcaaa aggtaacaca
      721 tagaataaaa cttttttcat tttcgtcctt taaatgatga aatttcattt ttatttgtta
      781 aaatagtttt tcaagtaagt ataaagcaaa gagtgttcca ctttttaaaa ccaaggagaa
      841 aataatggca aatctttatt tgatgagatc taggagtgat gagttaaata cattagtcac
      901 cacgaaatta ttgaaaaact atagcaagat atataaaaat atagctattt actgtcctgt
      961 gatttatgta catcgtatcc ctgttttgca aggatggctt gaggaatttg atattaagca
     1021 aactttgaaa aatgcttata gttttacttt tagagaagct atggaagaat ttagcaaaga
     1081 tccgcatagt tttttcaata ctatcttaga agagtatgag gaattaaatc gtaaatatga
     1141 ttttgttctt gttaatagtt tttgcgaatt tggaatactt gatggttttg atttgagtat
     1201 aaaattggct aaaaatctta acactcctat agcggctatt attaataatg aggataaatt
     1261 aatagctcaa aaatattttg atgaagcttt agatggtaga gattatgctt tgattaatga
     1321 aaattttaat tttgaagaaa tgcataagtt gcaagcttat gattttatga ctccgcatcg
     1381 ttttaaatat gaactcatta aaaaaagtgt taaaaataaa aaaaccgttg ttttaccaga
     1441 aagcaatgat gaaagaattt taaaagcagt tgaaatttta cttaaaagta gtgtagtgga
     1501 tcttatttta ttgggtgatg agcaagatat caaacaaaaa gccgatgaat tggcacttga
     1561 tttaaccgca gtaaaaatac tcaatccgct tcattcagaa tataacgaag aatttgccac
     1621 tttgttatat gaagcaagaa aatctaaagg aatgagcctt gaagaggcta aagaattggt
     1681 taaagatagg acttattttg gaaccttgtt gatacatagt gggaaagctg atgctatggt
     1741 aagtggagca tctactacga cagctgaaac tattcgtcct gcgcttcaga ttatcaaaac
     1801 tcaagagggt gttgactctg tttcgggaat tttctttatg gggcttgatg ataaggtttt
     1861 agcttttgca gactgtgctg taaatccaaa tccaaatgcc gagcaactcg ccactagtgc
     1921 ttatgtaagt gctatgactg caaagtcttt tggtatcgag ccaaggatag ctttgctttc
     1981 ttattctagt ggagatagcg gtaagggtga gagtgtagat cttgttaaag aagctttaag
     2041 aattgctaaa gaaaaatatc cagaattaaa tatcgatggc cctatgcaat ttgattgtgc
     2101 ttatgatcct aaaactgctg ctaaaaaaat gccaaattct aagatagcag gtaatgtaaa
     2161 tgtatatatc tttcctgatc ttgacgctgc aaatatttgc tataaggctg tgcaaagaac
     2221 agcaaatgct ttggcaatcg gtcctatttt gcaaggactt aaaaaacctg taaatgattt
     2281 aagtcgtgga tgtttggttg atgatatagt agatacggtt attttaagtg ctatacaagc
     2341 acaataagaa aggaaagtga atgaagattt tagttttaaa ttcaggctct tcatctatta
     2401 aatttaaatt ttttgatgat aaagtggtta aagccagtgg tttggtagaa aaaattggag
     2461 aagaaaaatc aaaagtcata ctaaaaaatg ccttaaatga tgaaacattc gaaagagaac
     2521 ttcctataaa aaatcacgaa catggattgc aaattgtcaa cgagcttttt aaagaatctg
     2581 gaattttgga agatttaaat gctttagatg gctgtggtca tcgcatagtg catggaggaa
     2641 gaaatttaag cgagcattgt ttagtggatg attatgttct taaagagata gatagggtta
     2701 gtatttttgc tcctttgcat aatcctgcgc atttagcagg tataaaaaca atgatcaaag
     2761 ctgcacctag tgttgctaat gcagctattt ttgatacagc ttttcatcgc actatgcctg
     2821 attttgctta tatgtatgct ttgccttatg atttttatga taagcacaat ataagaagat
     2881 atggtttcca tggtacttct cacgcttttg tgagtgctag ggcagcccaa ttacttggaa
     2941 aaaataaaga ggatttaaac gcaatttcag cacatcttgg aaatggtgcg agtgtttgtg
     3001 ctattgaggg aggtaaaagt atagacactt ccatgggttt tactcctctt gaaggtcttg
     3061 ttatgggaac tcgctgtggt gatttagacc ctgcaatttt gccatttatt agccatctta
     3121 agggtttaac aatagaagaa attgatactt tgcttaataa aaaaagcgga ctttatggaa
     3181 tttgcggttc taacgatttt agagatatag gagcaaaaat cgagcaaggt gatgataggg
     3241 cacgtttagc ttttgatatg ttttgttatc gccttttaaa atatataggg gcttatttta
     3301 cggttttacc tagaactgac gctattattt ttacaggcgg tataggtgaa aatgctgctt
     3361 tagttcgcca aaaagtttgt gaaagattat ctcatcttgg tgttgagctt gatatagaat
     3421 taaacaacaa aaaagcaagc tgtgaaagaa tgattagtac tgccaattct aaggtaaaga
     3481 tttttatcgt tcctacagat gaagaacttg agattgccag aatcacagaa gagttgataa
     3541 acaaaagcta agagcttttg ttttaaccca aatttaattt tctttagata gtattttaaa
     3601 ctaaaaattt aaaagtgtaa aaatatgaaa aaatttaaag attttagttg taattttctt
     3661 tttaagatat ccgatcaacc tgttcttttg cgtgatttgc ttgaggctaa tgctttgttt
     3721 aatgatggaa
//
LOCUS       DBBXRO010000146         3643 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.147, whole genome shotgun sequence.
ACCESSION   DBBXRO010000146 DBBXRO010000000
VERSION     DBBXRO010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.147"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1105
                     /locus_tag="ACJFEZ_001690"
     CDS             <1..1105
                     /locus_tag="ACJFEZ_001690"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HGG0917778.1"
                     /translation="SLIMLAAGNSTRFDMGVKKQFLRLGDDPLWLYATRNLSTFYPFK
                     KIVVTSSNTSYMKKFARNYEFVEGGATRAESLKKALEIIDSEFVMVSDVARVLVSKSL
                     FDRLIENLDKADCITPALKVADTTLFENETLQREKIKLIQTPQISRTRLLKQALNQNL
                     DFTDDSTAISAVGGKIWFVEGEENTRKITFKEDLKKLDLPRPSNEIFCGNGFDVHEFG
                     EERPLLLGGVEIHPTMGLKAHSDGDVLAHSLTDAILGAACLGDIGELFPDTDEKFKNA
                     NSMNLLKEAYKRVKEFGFELVNIDICVMAQTPKLKDFKEAIAQNIANTLNVDEFRVNI
                     KATTTEKLGFIGRKEGMAVLASANLKYFDWTKI"
     gene            1102..1989
                     /locus_tag="ACJFEZ_001691"
     CDS             1102..1989
                     /locus_tag="ACJFEZ_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HGG0917779.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDVGYSCEIINSFDERNPEKYYDI
                     VLLSTNTSNFLKAVTEFKHSIIILLISYISTDTVSNPLKLGACDYIQKPFMIEELIRK
                     IKHYQDFKKLSILNKAYKSYIKSRLQTVKIPEYNYKKLKLPVVLKSNKQSSADAFVFN
                     YINEYDITLSYVDLSVSNSVEKAMKLPTENNLLFLSNFQVLKPLEREKLLEFIKNKSV
                     ILHTNSNIEDLELPCINLSDNEKNIDSNQILTIDEYVKYIILNYQNVFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            1967..3127
                     /locus_tag="ACJFEZ_001692"
     CDS             1967..3127
                     /locus_tag="ACJFEZ_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HGG0917780.1"
                     /translation="MKSAKKNKSIIIDKNELGILSLIKEGLLGSCTHLMDEHETKQIF
                     KTGKSNNESFPYPLSFAPKVSEEFIKDIRIGSKIDLILDDEIVGNITLKSKFKNDKNF
                     SNIFSPHTCSLDDMGEICIGGEIEIYSSTIQKIKEEFHKTKENLNAHKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVVFLVESFDANGFDFDLKQNYLKKFIQNYLPPDRIFIFP
                     LKDINLFHAHLNPSLESILAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYD
                     IEVIVLPEFVFCDACRMIVSTRSCPHGCHHHLHYNSQSLKELLRAGIVPPAVFMRKEV
                     SSIILSSIFPNRFKNLQKIYNDLFATDGILEYKSDEEFYQKLLETHQMSYMV"
     gene            3137..3637
                     /locus_tag="ACJFEZ_001693"
     CDS             3137..3637
                     /locus_tag="ACJFEZ_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HGG0917781.1"
                     /translation="MQKLFLTFFYSGCAKKAPGTFGTLAALIPAFFILKYLGITTLFL
                     LSILIFIASIRVIDDYERKTGIHDDKHIVIDEVAGVFLACAIAASGANSLLNFFMAFV
                     FFRIFDITKPSIIGKIDKKTKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFDLVFWDK
                     DLINLF"
BASE COUNT         1275 a          527 c          613 g         1228 t
ORIGIN      
        1 tagcttgatt atgctagcag ctggaaattc tactcgcttt gatatgggag taaaaaaaca
       61 atttctacgc cttggcgacg atcctttatg gctttatgct acgcgaaatt taagcacttt
      121 ttatcctttt aaaaaaatag ttgttacttc tagtaatact tcttatatga aaaaatttgc
      181 tagaaattat gaatttgttg aaggtggtgc cactagggca gaatccttaa aaaaagccct
      241 agaaatcata gacagtgaat ttgtaatggt aagtgatgta gcaagagttt tagtaagtaa
      301 aagcttgttt gatcgtttga ttgaaaattt agataaagct gattgtatca ctccggcttt
      361 aaaagtcgca gataccacgc tttttgaaaa tgaaaccttg caaagagaaa aaatcaaact
      421 cattcaaact cctcaaattt cacgcactcg cttactcaaa caagccttaa atcaaaattt
      481 agatttcaca gatgatagca cagctatatc tgcagtgggt ggaaaaattt ggtttgttga
      541 gggtgaggaa aatactagaa aaataacctt taaagaagat cttaaaaagc ttgatttacc
      601 tcgaccaagt aatgaaatct tttgcggaaa tggttttgat gttcatgaat ttggagaaga
      661 acgccccttg cttttaggtg gagttgaaat tcatcctact atgggcttaa aagcacacag
      721 tgatggagat gttttagctc actctttaac cgatgcgatt ttgggtgctg cctgtctagg
      781 agatataggc gaactttttc ctgatacgga tgaaaaattt aaaaatgcaa attctatgaa
      841 tcttttaaaa gaagcatata aaagagttaa ggagtttggc tttgaacttg tcaatataga
      901 tatttgcgtg atggcacaaa ctccaaaact taaagatttt aaagaagcca tagctcaaaa
      961 tatagcaaat actcttaatg tcgatgaatt tagagtaaat atcaaagcta ccactactga
     1021 aaagctaggt tttatagggc gtaaagaagg tatggctgtt ttagcaagcg caaatttaaa
     1081 atattttgat tggacgaaaa tatgaaagtt ttaattatag aaaatgaaat ttatctagct
     1141 caaagcataa gtattaagct tagtgatgtg ggttatagtt gcgaaattat caattctttt
     1201 gatgagcgta accctgaaaa atattatgat attgttttac tttctactaa tactagtaat
     1261 tttttaaaag cggttacgga atttaaacat agcattatta ttttgcttat ttcttatatc
     1321 agcacagaca cagtttcaaa tcctttaaaa cttggtgcgt gcgattatat acaaaaacct
     1381 tttatgatag aagaattgat acgaaaaatc aaacattatc aagattttaa aaagctctcc
     1441 attcttaata aagcttataa aagctatatt aaatcaagac ttcaaacagt taaaattcca
     1501 gaatacaact ataaaaaact aaaacttcct gttgttttaa aatccaacaa acaaagctca
     1561 gctgatgcct ttgtatttaa ttatatcaac gaatacgata tcaccctttc ttatgttgat
     1621 ctatctgtga gtaattcagt agaaaaagcg atgaaacttc caacggaaaa caatctttta
     1681 ttcttgagta attttcaagt tttaaaaccg ctagagcgtg aaaaattgct tgaatttatc
     1741 aaaaacaaat cagttatttt acatactaat tcaaatatag aagatttaga gcttccgtgc
     1801 atcaatctta gtgataatga aaaaaatatc gatagtaatc aaattttaac catagatgaa
     1861 tatgttaaat atattatttt aaattatcaa aatgtctttc ctgatacaga tctttcaaag
     1921 aaattaggaa tttctcgtaa gtctttatgg gagaaaagga aaaaatatga aatcagcaaa
     1981 aaaaaataaa agcattatca tagacaaaaa cgaactaggc attctttctc ttatcaaaga
     2041 gggtttgctt ggcagttgta ctcatttaat ggatgaacat gagacaaaac aaatttttaa
     2101 aacgggcaaa tccaacaacg aaagctttcc ttatcctcta tcctttgctc caaaagtttc
     2161 agaagaattt attaaagata ttcgcatagg aagtaaaatc gacctcattc ttgatgatga
     2221 aatagtagga aatatcacgc ttaaaagtaa atttaaaaat gataaaaatt tttccaatat
     2281 ctttagccca cacacctgct ctttagatga tatgggtgaa atttgtatcg gtggagagat
     2341 agaaatttat agttccacaa tccaaaaaat caaagaagaa tttcataaaa ccaaagaaaa
     2401 tcttaatgct cataaaatta ccgctatagt ttcaagcttt gatcctttgc atagagcgca
     2461 tgaaagaatg tttcgctgga ctatagataa ggcggatttg gttgttgttt ttcttgtaga
     2521 atcttttgat gccaatggct ttgattttga tttgaagcaa aattatttga aaaaatttat
     2581 tcaaaattat ttgccaccgg atagaatttt tatcttccca cttaaagata tcaatctttt
     2641 ccatgctcat ttaaatccta gcttagaaag cattttggct aagagtcttg gatgtaccaa
     2701 acttgtcgta gggcaaaatc acacaggact tggaatgttt tatgatgata atcagcctaa
     2761 aaccatactg gatgattttt ctaaagatta tgatatagaa gtgattgttt tgcctgaatt
     2821 tgtattttgc gatgcatgtc gtatgatagt aagtactcga tcttgccctc atggatgcca
     2881 tcatcattta cattataatt ctcaatcctt aaaagaattg ttaagagcag gtattgtgcc
     2941 tcctgctgtt tttatgcgaa aagaagtttc aagtattatc ttatcttcta tttttcctaa
     3001 tcgatttaag aatttgcaaa aaatctataa tgatcttttt gcaacagatg gaattttaga
     3061 atacaaaagc gatgaagaat tttatcaaaa gcttttagaa actcatcaaa tgtcttatat
     3121 ggtttgaaag gaaacaatgc aaaaactttt tttaactttt ttttattcag ggtgtgcaaa
     3181 aaaagcaccg gggacttttg gaactttagc agctttaatt cctgcttttt ttatattaaa
     3241 atatctagga atcactacct tatttttact cagcatttta atttttattg ctagtataag
     3301 agtgattgat gattatgaaa gaaaaacagg gattcacgat gataaacata tagtaattga
     3361 tgaagttgca ggagtttttc tagcgtgtgc catcgctgca agcggcgcta attctttact
     3421 gaattttttt atggccttcg tgttttttcg catctttgat atcacaaagc cttctatcat
     3481 aggaaaaatc gataaaaaaa ccaaaggtgg attgggtgtt atgctagatg atatgctagc
     3541 aggattgttt gcagggcttt taagtgcagt gatttatggt tttttgctta aatttgattt
     3601 agtcttttgg gataaagact tgataaattt attttgaaat ttt
//
LOCUS       DBBXRO010000147         3631 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.148, whole genome shotgun sequence.
ACCESSION   DBBXRO010000147 DBBXRO010000000
VERSION     DBBXRO010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3631
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.148"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            27..1526
                     /locus_tag="ACJFEZ_001694"
     CDS             27..1526
                     /locus_tag="ACJFEZ_001694"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:1900727 - osmoregulated periplasmic glucan
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HGG0917782.1"
                     /translation="MLITLLNFNLHSFVYEKLSQNLLLTLVFIVAYFGLVHMIFSLIF
                     VKYLTKILSIFFILSSCTSLYFITFYGVLIDSDMIQNVMQTDIKEVKDLLSWRLVLLA
                     IVVLLFCVFILRIRIENNTEQGFFKKIRVRVLSALLGCSIFLIAFVPLSKTFIPFFRT
                     YNEIRMYNVPFYPIYAVYRYCVRFVKVKPEFKTIANDAYRENNHTKKLLVLVVGETAR
                     AANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSLSKRQNYSSSEYQ
                     ENVMDILQKTGVKASWIDNNSGGCKGVCDRLSDKQQLSSDWDENLLPFLKERLGNLDT
                     QNIIVLHLQGSHGPAYYKRYPSEFKKFIPTCDTNELSKCDSEALINTYDNTLLYTDYL
                     LSEIIKLLKEKKDYESSLIYLSDHGESLGENGIYLHGMPYAIAPSYQTHIPVIFWSND
                     KKLMMTAQNHKGLKLSQDNLFSTLLGYFDVKTMVYESDYDLLNQTLKAN"
     gene            1526..1882
                     /locus_tag="ACJFEZ_001695"
     CDS             1526..1882
                     /locus_tag="ACJFEZ_001695"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HGG0917783.1"
                     /translation="MKPKYHLLNNARYALEGILALLKNEMAFRLELCVIIPAIVFSFF
                     LDVSFLEHLFLITVLILILITEALNSAIEACVDLITNEWHEKAKVAKDCASAAVFFSV
                     CLALFIWGFILGKLWL"
     gene            1873..2115
                     /locus_tag="ACJFEZ_001696"
     CDS             1873..2115
                     /locus_tag="ACJFEZ_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006276 - plasmid maintenance [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HGG0917784.1"
                     /translation="MAVKIENLMREILGKKRFELLQFLCENADENGFVMIKISELEAR
                     LNQSKPTIIATFKFLEEKKLFKKLKNGFYQLCIPCD"
     gene            2217..3221
                     /gene="pyrC"
                     /locus_tag="ACJFEZ_001697"
     CDS             2217..3221
                     /gene="pyrC"
                     /locus_tag="ACJFEZ_001697"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HGG0917785.1"
                     /translation="MTLKNPLDMHLHLRDKNMLSLVAPFSAKDFRAGVIMPNLVPPLC
                     DLESLKSYKTRIINACENENFTPLMTLFFKNYDEKFLKSAKDEIFGIKLYPAGITTNS
                     KGGVSSFDIENLKPTLEAMSDLQIPLLVHGETNDFVMDRESNFAKIYENLAKNFPRLK
                     IVMEHITTQTLCELLKDYENLYATITLHHLIITLDDVIGGKMQPHLFCKPIAKHYKDK
                     EALCELAFGGYEKVMFGSDSAPHPKHEKECCGCAAGVFSASVALCVLADLFSKNSNEV
                     NLQKFISDNACKVHNLTFEKEKIIVLENQEWQVPNEYKNENEKVVPFMAGESLKFRVK
                     "
     gene            complement(3262..3630)
                     /locus_tag="ACJFEZ_001698"
     CDS             complement(3262..3630)
                     /locus_tag="ACJFEZ_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002850781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HGG0917786.1"
                     /translation="MNTVLMMISDKIPSNSLPLVQDKLKNASEDKINSLAILPFKSHI
                     IGLILGLFLGAFGIDRFYKGDIGLGIAKLITWLAGVVTIWIYIGGLILFVLWIWCIVD
                     WFLVWKGIKKDNLNKILAVL"
BASE COUNT         1226 a          502 c          607 g         1296 t
ORIGIN      
        1 ggtttggatt tgtacttttt aattccatac tcattacact tttaaatttt aatttacatt
       61 catttgttta tgaaaaatta tcccaaaatt tactgcttac tttagttttt atcgtagctt
      121 attttggttt ggttcatatg attttttcac ttatttttgt aaaatattta actaaaatat
      181 tgtctatatt ttttatttta tcatcctgta ccagtcttta ttttatcact ttttatggag
      241 ttttaattga ttcagatatg atacaaaatg ttatgcaaac tgacataaaa gaagtgaaag
      301 atttgctaag ttggcgtttg gttttattgg ctattgtcgt cttgcttttt tgtgttttta
      361 ttttaagaat tcgtattgaa aataatacag agcaaggttt ctttaaaaag atacgggtta
      421 gagttttaag tgctttgttg ggttgttcta tctttttaat cgcctttgtg cctttaagta
      481 aaacctttat accttttttt agaacttaca atgaaataag aatgtataat gttccttttt
      541 atccaattta tgccgtatat cgctattgtg ttcgttttgt aaaagttaag ccagaattta
      601 aaactatagc taatgatgct tatagagaaa acaatcacac taaaaaactt ttagttttgg
      661 tagtgggtga aaccgctaga gcggcaaatt actctttggg tggatatgct aaaaatgata
      721 ccaattttta taccaaaaaa gataatgtag tattttttga taatttttct tcatgcggca
      781 ctgctacagc ggtgagtctg ccttgtatgt tttctctttc aaagcgtcaa aactattcaa
      841 gtagtgaata tcaagaaaat gttatggata tcttgcaaaa aacaggcgta aaagcttctt
      901 ggatagacaa taactcaggc ggatgcaagg gagtttgcga tagattatct gacaagcagc
      961 aactttctag cgattgggat gagaatttat tgccattttt aaaagaaaga ctaggaaatt
     1021 tagatactca aaatatcata gttcttcatt tacaaggctc tcatggacca gcttattata
     1081 agcgttatcc aagcgaattt aaaaaattta tcccaacttg tgatactaat gaactttcaa
     1141 aatgtgatag tgaagcttta atcaatactt atgataatac tttgctttat acggattatc
     1201 ttttaagtga gattatcaaa cttttaaaag aaaaaaaaga ttatgagagt tctttaatat
     1261 acctttcaga tcatggagaa agtttgggtg aaaatggaat ttatttacac ggaatgcctt
     1321 atgctatagc gccaagctat caaactcata tccctgtcat tttttggagc aatgataaaa
     1381 aactcatgat gacagctcaa aatcataaag gcttaaaact ttctcaagat aatcttttca
     1441 gcacactttt gggttatttt gatgttaaaa ccatggttta tgagtcagat tatgatttat
     1501 taaatcaaac cttaaaggcc aattaatgaa accaaaatat catcttttaa acaatgcacg
     1561 atatgctcta gaaggaattc tagccctgct taaaaatgaa atggcttttc ggctagagct
     1621 ttgtgtgatt atccccgcta tcgtttttag ctttttttta gatgtaagct ttttggagca
     1681 tttgttttta atcactgttt taattctcat cttaatcact gaagctttaa attcagctat
     1741 tgaagcttgt gtggatttga ttacaaatga atggcatgaa aaagctaaag ttgctaaaga
     1801 ttgtgcaagt gcggcagtat tttttagtgt gtgtttagca ctttttattt ggggatttat
     1861 cttaggaaaa ttatggctgt aaaaattgaa aatttaatga gagaaatttt aggtaaaaaa
     1921 cgctttgagc tgcttcaatt tttatgtgaa aatgcggatg aaaatggttt tgtgatgata
     1981 aaaataagcg agcttgaagc aagattaaac caaagcaaac ctaccatcat cgccactttt
     2041 aaatttttag aagaaaaaaa gctttttaaa aagttgaaaa atggatttta tcaactttgc
     2101 atcccttgtg attagaaaat aaatttttat tttaagtatt ctttatctta gaaccacttt
     2161 ttattattat ttttagcttt ataggataaa atttgctgat tgatttagga gaaaaaatga
     2221 cacttaaaaa cccactagat atgcatttgc atttaagaga taaaaacatg ctaagcttgg
     2281 ttgcaccttt tagtgctaaa gattttcgtg cgggtgtgat tatgccaaat ttagttccac
     2341 cgctttgtga tttagagagt ttaaaatctt ataaaacgcg tataataaat gcttgtgaaa
     2401 atgagaattt cactccttta atgactcttt tttttaaaaa ttatgatgaa aaatttctta
     2461 aaagtgctaa ggatgaaatt tttggtatca agctttatcc tgcgggcatc accacaaatt
     2521 caaaaggtgg ggtttcaagt tttgatatag agaatttaaa acccacttta gaagcgatga
     2581 gtgatttgca aattccactt ttggtacatg gagaaaccaa tgattttgtg atggataggg
     2641 aaagcaattt tgctaaaatc tatgaaaatt tagctaaaaa ttttccgcgt cttaagattg
     2701 ttatggagca tattacgact caaaccttat gtgaactttt gaaagattat gaaaatttat
     2761 atgcaaccat tactttacat catttaatca tcactttaga tgatgttatc ggtggaaaaa
     2821 tgcagcccca tcttttttgc aagcctatag caaagcatta taaagataaa gaagcgcttt
     2881 gtgagcttgc ttttggtgga tatgaaaaag tgatgtttgg aagcgatagt gcaccacatc
     2941 ctaagcatga aaaagaatgt tgcggttgtg cagcgggtgt atttagtgcg agtgtagcac
     3001 tttgtgtttt ggctgatctt tttagtaaaa attcaaatga agttaatttg caaaagttta
     3061 tttcggataa tgcttgtaaa gtgcataatt taacctttga aaaagaaaaa atcattgttt
     3121 tagaaaatca agaatggcaa gttccaaacg aatataaaaa cgagaatgaa aaagtagttc
     3181 cttttatggc gggggaaagt ttaaaattta gagtaaaata aaaactagtt ttaaaactag
     3241 tttttatcta agttgctatt tttataatac agctaagatt ttattaagat tgtctttttt
     3301 gatgcctttc catactaaaa accaatccac aatgcaccat atccataaaa cgaataaaat
     3361 taaaccaccg atataaatcc aaatggtaac aacacctgct aaccaagtta taagtttagc
     3421 aatacccaaa cctatatcac ccttataaaa acgatcaatt ccaaaggcac ctaaaaacag
     3481 acctaagatc aaacctataa tatgactttt aaaaggtaag atagcaagag agttgatttt
     3541 atcttcactt gcatttttaa gcttatcttg cacaaggggc aagctattgg atggaatttt
     3601 gtctgaaatc atcatcaata cagtatttat a
//
LOCUS       DBBXRO010000148         3621 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.149, whole genome shotgun sequence.
ACCESSION   DBBXRO010000148 DBBXRO010000000
VERSION     DBBXRO010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.149"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(72..146)
                     /locus_tag="ACJFEZ_001699"
     tRNA            complement(72..146)
                     /locus_tag="ACJFEZ_001699"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(112..114),aa:Asn,seq:gtt)
     gene            complement(228..1478)
                     /locus_tag="ACJFEZ_001700"
     CDS             complement(228..1478)
                     /locus_tag="ACJFEZ_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HGG0917787.1"
                     /translation="MNRSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGIISEREFEEQTKNYNKMEPILEVRQIRRILFGGEVLARVEVNNGL
                     IEIISYDRQVYLNIIFDGKVNLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKALKKQIDKFAQGKLNDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     MMHELKTPITKGLITLEMLEDNKYKERLESIFNRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDNNIRIFMDESFFVNVDFKLFTTAIKNMIDNGIKHSENGF
                     IQIDIMDDYICFKNRGPELNNTLEYYTQAFTQGGSKQKSSFGLGLYIVNTILESHGMK
                     LDYDYEEGVNLFYFRNLKSIIVKE"
     gene            complement(1475..2149)
                     /locus_tag="ACJFEZ_001701"
     CDS             complement(1475..2149)
                     /locus_tag="ACJFEZ_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HGG0917788.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIISSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(2232..>3621)
                     /locus_tag="ACJFEZ_001702"
     CDS             complement(2232..>3621)
                     /locus_tag="ACJFEZ_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HGG0917789.1"
                     /translation="ASALFAANINFNETSITSNRVNPAAGDVVLSYHNSIRDAKKSVV
                     NISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRRGGNDKEVVSSLGSGVIISQD
                     GYIVTNNHVVDDADTISVSLPGSDTEYKAKLIGKDPKTDLAVIKIEANNLWAITFTNS
                     DDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDASINPGNSGGA
                     LVDSRGFLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGRIDRGFLGVTISA
                     LQGDTKKAYKNQDGALITDIQKGSSADEAGLKRGDLVTKVNDKVIKSPSDLKNYIGTL
                     EIGQKISLNFERDGENKRVDFILKGEKENPKAVQNDLIEGMTLRNLDPRFKERLQIPK
                     DVNGVFVESVKDKSRAKDSGFKEGDIIIGVGQSEIKNLKDLEQALRQVKKKEFTKIWV
                     YRNGFATLLILK"
BASE COUNT         1154 a          686 c          486 g         1295 t
ORIGIN      
        1 tatacttaat tccataactt aatatttgga tttattaaaa aataaaatat gattttatag
       61 agagttagaa gtggctccgg atgtaggatt cgaacctacg accaatcggt taacagccga
      121 ctactctacc gctgagctaa tccggaatat cttaaaaagt aaaatgtaat tatatttgat
      181 ttttaaaact ttgtcaagca tttttttaaa aaaatgcaaa aaatatttta ttctttaacg
      241 ataatactct ttaaatttct aaaataaaat aaatttacac cctcttcata atcataatca
      301 agcttcattc catgagattc taaaatagta ttgactatgt aaagtccaag tccaaagctt
      361 gatttttgct tcgagcctcc ttgggtaaaa gcttgagtat aatactctaa agtgttattt
      421 aattcaggac ctctattttt aaaacaaata taatcatcca ttatatcgat ttgtataaag
      481 ccattttcag aatgcttaat accattatca atcatatttt taatcgcagt ggtaaaaagc
      541 ttgaaatcta catttacaaa aaagctttca tccataaaaa tgcgtatgtt attatcatct
      601 cgcatagcaa tttctttggc ttcatccaaa acatctaaaa tattgtattt tttgcggttg
      661 ataaatgctg ctcctgaagt aatctgctct atggccgcaa attcattgat aagaatttca
      721 agacggttaa atatactttc taatctttct ttgtatttat tatcctctag catttcaaga
      781 gttataagcc ctttggtaat cggggtttta agctcgtgca tcatatttct taagaaaaat
      841 tggcgtgatt gattgagctt acgaatttga acgatcgctt gataaaaagc ctcacttact
      901 tgagaaattt catccacccc cgtgcttaca tcttctatat cattaagctt tccttgtgca
      961 aatttatcaa tttgcttctt taaagctttt aaaggcttca gttttttaaa tatataaata
     1021 tagagcaaca caagtataca aatcacggct acagctatgg ctttaatgat aaaatatcta
     1081 taggtttgat agtcttgatc tttgtaaaga tttaccttgc catcaaaaat gatatttaaa
     1141 tacacttgtc tatcataaga gatgatttcg atcaagccat tattgacctc gactctagct
     1201 aacacttccc cgccaaaaag aattctacga atttgtctaa cctctaagat aggctccatt
     1261 ttattgtaat ttttcgtttg ttcttcaaat tctctttcac taattatccc tgcaaaattt
     1321 aaaagccttg cgttggctat taaagaatat ttggtattta attctctagt ataattttgc
     1381 tgatcgtatt ctataagcca caaaaaccca agaataacac tgacaccagc aaaaataaaa
     1441 ataaaagtta tggtataaaa aatagatgaa cgattcattg agtcagctta tagcctatac
     1501 ctctgataga atggatatat tttggagttt ttggatcatc acccattttt tgacgaatac
     1561 ggctgatgat tacatcgatg cttttattgc ttgagtcttc actgattgaa gaacaattat
     1621 aaacaagctc ttcgcgactg acaacaccgc cttctttttt gatcaaatag cttaaaatgt
     1681 caaattccgc attggttaaa gtcagctctt gtcctttcat tgtgatgata tgcttgtatt
     1741 gatcataaac aagatcttta acgctttttg ctatggcgct ttttgtattt gaaatgcgtc
     1801 ttaaatggct tttaatgcgc gcttgaagtt ctttaggatt ataaggcttt ggcaaataat
     1861 catccgcgcc caattctaaa gcattaacct tatctgtaat atcatgtcta gcgcttgaga
     1921 taataatagg cgtatcatac tttttacgaa tttcctcaca cacttcaagt ccatcaagtc
     1981 ctggcaagga aagatccaaa attataagct gatattcttt taaagcaagt tttgaaagac
     2041 ctatataagg ctcgtgtgcg atatcaactt tcatatcaaa tttttctaaa tactcagccg
     2101 taatttcagc aagctctaaa tcatcttcta tcataaggat atttgtcatt gcattccttt
     2161 tactgtattt aatcttagtt tttaaattct aaactaaatt atataacgaa agggaaaccc
     2221 tttcataaaa attatttaag tatcaacaaa gttgcaaaac cattacgata aacccaaatt
     2281 ttagtaaatt cttttttctt cacttgtctt aaggcttgtt ctaaatcttt taaattttta
     2341 atttcacttt gtcctacgcc tataatgata tcaccctctt taaatcctga atccttagcc
     2401 ctgctcttat ctttaacact ttctacaaaa accccattta catcttttgg aatttgcaaa
     2461 cgctctttaa atcttggatc taaatttctt aaagtcatac cctcgatcaa atcattttga
     2521 acggctttag gattttcttt ttctccttta aggataaaat caaccctttt attttcccca
     2581 tctctttcaa aattgagtga aattttttga cctatctcta aagtgcctat atagttttta
     2641 agatcgcttg gacttttaat cactttatca tttaccttag ttaccaagtc cccacgctta
     2701 agtcctgctt catcagcact tgaacccttt tgtatatcgg taattaaagc accatcttga
     2761 tttttataag cttttttagt atcaccctgt aaagcagaaa tagttacacc caaaaatcct
     2821 ctatcaatcc tacccttttc aataagcttt ttagctatat ctttcaccat attcgaaggt
     2881 attgcaaagc cgatgccatt atttccaccc ccacgagaaa gaatggctga atttattcct
     2941 actaaaaatc cgcgactatc gactaaagcg ccgcctgaat ttccaggatt gattgaagca
     3001 tctgtttgga tgaaattttc atattggttt aagcctatat tgtctttatt taaagcagaa
     3061 attatcccgc ttgtaacact aaatccaaca ccaaaaggat ttcctaaggc aaaaacaaca
     3121 tctccttcca ttaaatcatc tgaatttgta aaagtaatag cccaaagatt gtttgcttct
     3181 attttaatca ctgctaaatc cgtctttgga tccttgccta taagcttggc tttatattct
     3241 gtatcactgc ctggcaaact tacactgata gtatctgcat catctactac atggttgttt
     3301 gtaacgatat aaccatcttg cgaaataatc acacccgagc ccaaagagct taccacttct
     3361 ttatcatttc ctcctcttct ttgtggaaaa tcaaaatcaa aaaattgttt aaaataaggg
     3421 tcgttaaaaa aatcatctaa aggacttgga cgattggctc ttgtaatggt ttttgaagta
     3481 gagatattta caacagattt tttagcatct cttatcgaat tatgataaga aagaactaca
     3541 tctccagccg caggattgac acgattgctt gttatacttg tttcattaaa attgatattt
     3601 gcagcaaata aagcacttgc t
//
LOCUS       DBBXRO010000149         3479 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.150, whole genome shotgun sequence.
ACCESSION   DBBXRO010000149 DBBXRO010000000
VERSION     DBBXRO010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.150"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            7..1074
                     /gene="dnaN"
                     /locus_tag="ACJFEZ_001703"
     CDS             7..1074
                     /gene="dnaN"
                     /locus_tag="ACJFEZ_001703"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HGG0917790.1"
                     /translation="MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLLFEADEDKLII
                     RASDFEIGINYKIRKIRVENGGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPKTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDRINFVGTDTRRLAVYTLEKANNQEFHISIPKKAIMEMQKLFYEKIEIYYDENML
                     IAKNDNFEFFTKLINDKFPDYEKVIPKTFKQELKFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIETGVSEEFNLNIKIKYLLDFLTSIEEEQFTLSVNE
                     PNLAFVVNSQGLSMVIMPMIL"
     gene            1106..3418
                     /gene="gyrB"
                     /locus_tag="ACJFEZ_001704"
     CDS             1106..3418
                     /gene="gyrB"
                     /locus_tag="ACJFEZ_001704"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HGG0917791.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDIEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGKSK
                     KTGTTIEFWPDNTIFEVTEFDYDILAKRFRELAYLNPKITINFKDNRVGKSESFHFEG
                     GISQFVSDLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKG
                     KLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYRYKKGQKKEIYLKDEKALNDYLIETGIESSNYEGIG
                     LNDLKDFLKIVAAYRSVLNELKKRFNVISVIRYLIENPDFIKENNEELFKIVKAFLEK
                     EGHNILNHYINENEIRIYVQTENGLEELIINDDLFSHPLYEEANYIFNKIKDRDLSFE
                     KDILDILDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAN
                     DTFNLFMGDEVEPRRDYIQTHAKDVKHLDV"
BASE COUNT         1340 a          474 c          612 g         1053 t
ORIGIN      
        1 gaaaaaatga aactaagtat caataaaaat acccttgaat cagcggtact tttatgtaat
       61 gcctatgtag aaaaaaaaga ttctagcacc atcacttcac atttactttt tgaagctgat
      121 gaggataaac ttatcattag agcgagtgat tttgaaatag ggataaacta taaaataaga
      181 aaaattcgcg tagaaaacgg tggatttgct actgcaaatg caaaaagcat agccgatgtg
      241 ataaaaagtt taaacaatga agaagtggta ttagaaacca tagataattt tttatttata
      301 agacaaaaaa gtacaaaata caaacttcct atgtttaatc atgaagattt tccaaatttc
      361 cctaaaacag aaggtaaaaa ccaatttgac attgattcaa gtgatttaag tagatctctt
      421 aaaaaaattc taccaagcat tgatactaac aaccctaaat attctctaaa tggtgcattt
      481 ttagatataa aaacagatag aataaatttc gttggaaccg atacaagacg ccttgcagtt
      541 tatactcttg aaaaagcaaa taatcaagaa tttcacatca gcattcctaa aaaagctatc
      601 atggaaatgc aaaaactttt ttatgagaaa atcgaaattt attatgatga aaatatgctt
      661 atcgctaaaa atgacaattt tgaattcttt acaaaactta tcaatgataa attccctgat
      721 tatgaaaaag ttatcccaaa aactttcaaa caagaactta aattttcaac tgaagatttt
      781 atagatagtc ttaaaaaaat cagtgttgta actgaaaaaa tgaaacttca tttcaacaaa
      841 gataaaatta tctttgaagg tataagctta gataatatgg aagcaaaaac cgaacttgaa
      901 atcgaaacag gagtaagtga agaatttaat cttaatatta agataaaata cctacttgat
      961 ttcttaactt caatcgaaga agaacaattc actttaagtg taaatgaacc taacttagcc
     1021 tttgtagtaa attctcaagg cttatctatg gttatcatgc ctatgatttt ataaaaactt
     1081 aaaatcttga gttaaaagga aaaatatgca agaaaattat ggtgcgagta atattaaagt
     1141 tttaaaaggc ttagaagctg ttagaaaacg cccaggtatg tatataggag ataccaatat
     1201 aggcggactt catcatatga tttatgaagt agtggataat tctatcgatg aagcaatggc
     1261 aggacattgt gatactatag atatagaaat cactaccgaa ggaagctgca tcgttagcga
     1321 taatggtcgt ggaattcctg tagatatgca ccctactgaa aatatgccaa ccctaaccgt
     1381 cgttttaacc gttcttcatg cagggggaaa attcgataaa gacacttata aggtttcagg
     1441 gggtttgcat ggtgtgggcg tttcagttgt aaatgcactt tctaaaaaac ttgtagctac
     1501 agttgaaaga aatggagaaa tttatcgcca agaattttca gaaggtaaag tcatcagtga
     1561 atttgatatt ataggaaaga gtaaaaaaac aggaaccacc atagaatttt ggcctgataa
     1621 tacaattttt gaagtaacag aatttgatta tgatattttg gctaaaagat ttcgtgaact
     1681 tgcatattta aatccaaaaa tcactataaa ttttaaagat aatcgtgtag gcaaaagtga
     1741 aagttttcat tttgagggcg gaatttcaca atttgttagt gatttaaata aaaaagaagc
     1801 tttaaccaaa cctatatttt ttagcgtaga tgaagaagat gtaaatgtag aagtagcttt
     1861 gctttataat gatacttata gcgaaaactt gctttctttt gtaaacaata tcaaaacccc
     1921 tgatggtgga acgcatgaag ctggatttag aatgggttta acaagagtga ttagcaacta
     1981 catagaagca aatgctagtg ctagggaaaa agactctaaa atcacaggcg atgatgtgcg
     2041 tgaaggactt atcgctgtag taagtgtaaa agtgcctgaa cctcaatttg aaggacaaac
     2101 taaaggaaaa cttggctctt cttatgtgcg tcctatagtt tcaaaagcaa gttttgaata
     2161 tcttagtaaa tattttgaag aaaatcctat cgaagctaaa gctataatga acaaagcctt
     2221 aatggcagct agaggaagag aagcagcgaa aaaagctaga gaattaacgc gtaaaaaaga
     2281 aagtttaagc gtaggaactt taccagggaa attagctgat tgtcaaagta aagatccaag
     2341 tgaaagtgaa atttatcttg tggaagggga ttctgcagga ggttctgcaa aacaaggtag
     2401 agaaagatct ttccaagcta tactgccttt gcgtggtaaa attttaaatg ttgaaaaagc
     2461 aagattagat aaaattttaa aatctgagca aattcaaaat atgattaccg cttttggctg
     2521 tggtataggt gaggattttg atctttcaaa acttagatat cataaaatca tcatcatgac
     2581 agatgcggat gttgatggat cacatataca aaccttgctt ttaactttct tcttccgttt
     2641 tatgaatgaa cttgtggcta atggacacat ttatcttgcc caaccaccgc tttaccgcta
     2701 taaaaaaggt caaaagaaag aaatttatct caaagatgaa aaagctttga atgattatct
     2761 catcgaaaca ggtattgaaa gttctaatta tgaaggaatt ggcttaaatg atttaaaaga
     2821 ttttctaaaa atcgttgccg cttatcgctc ggtattaaat gagcttaaaa agcgtttcaa
     2881 tgtgatttct gtgattagat atttgatcga aaatcctgac tttatcaaag aaaataatga
     2941 agaacttttt aaaatcgtta aagctttttt ggaaaaagaa ggacataata ttttaaatca
     3001 ttatatcaat gaaaatgaaa ttcgcattta tgtgcaaact gaaaatggtt tggaagaact
     3061 tatcatcaat gatgatttat tttcacaccc tctttatgaa gaggcaaatt atatctttaa
     3121 taaaataaaa gatcgtgatt tgagctttga aaaagatatt ttagatatct tagatgaagt
     3181 agaaaaaaat gccaaaaaag gtgcttatat ccaacgctat aaaggtttgg gtgaaatgaa
     3241 ccctgaacaa ctttgggaaa caactatgga tccaagcgta agaagacttt taaaaatcac
     3301 tatcgaagat gcacaaagtg ctaatgatac ttttaatctc ttcatgggcg atgaggttga
     3361 accaagacgc gattatatcc aaacacatgc taaagatgta aaacatttgg atgtgtaaaa
     3421 attttttagt gtcagattgt aaatttgaca ctaaattcta tctttttgtt taaaaattt
//
LOCUS       DBBXRO010000150         3351 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.151, whole genome shotgun sequence.
ACCESSION   DBBXRO010000150 DBBXRO010000000
VERSION     DBBXRO010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3351
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.151"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1570
                     /locus_tag="ACJFEZ_001705"
     CDS             <1..1570
                     /locus_tag="ACJFEZ_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0917792.1"
                     /translation="VSAAIFVVLVLSFIAMQLILNLDFKNTADKMSKSNLNTVSSSVF
                     QTMRMAMNLGDPEKIQEAIEDAKTIEGISDIKIYPSKETIELFEIKNPKISQEKLIID
                     QFTQPNLISLEQKLDNINHLRLIRPLIADESCIACHANANLGSVLGVMDVYHSLENIE
                     KDIAKTSRSYIVIFTIALIFTLVVVLFVLKMVVGNPIMELLSHAKELAQGSGNLRARI
                     RVKGRDEIAKACEYINQFIEKTQKTVSSASLNSKNVEKQSILLNSNAIELNEISTSSH
                     QKIDSSFKLGVDIGADLDEISNLSSDANKANDKSYQLLDQMIHSLLEIDKKVSDLVQN
                     ENNLALKIENMVKYAQNIQKATQMMGEIADKTNLLSLNAGIESARAGSYGKGFSVIAE
                     DIRALANNSEEFLHNVELIIKELLESIQEVTKELKENSHSIFSLNENTHLLASSANEV
                     KLCNQNSKNLVTQCTQRIKISQENIQNLLIHMRENVEASGKNEEISKILLQVADELKI
                     VCHNLESELSQFQI"
     gene            1580..2017
                     /locus_tag="ACJFEZ_001706"
     CDS             1580..2017
                     /locus_tag="ACJFEZ_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HGG0917793.1"
                     /translation="MKKTLQIVLTAAFFAGCASTSVNSKSTSKISNEFMQNQLFEIDK
                     IVVNGKTFDPKNAEENPNISFENNKFYGYAGCNRFFGSYQSNENTLEIQGDRVASTQM
                     LCHPLDVMEFENAFLSNFKGSFTISNKNGKLILNNGEMEIFFK"
     gene            2114..3091
                     /locus_tag="ACJFEZ_001707"
     CDS             2114..3091
                     /locus_tag="ACJFEZ_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HGG0917794.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWKPYLGEIIQAYKDFVKAAS
                     EFQKVLLIAPSKSDFAPFENIANVEFFVCDTNDTWIRDFGAIDILEDNRLKALDFTFN
                     AWGNKFQSELDNEVNSKLFKEKFNEKLTKIDFILEGGSIDFNGEGVMLTSSNCLLNEN
                     RNSHLDKSQIEAKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHSICE
                     DEKDEHYIPLQKMKKELEATGFNLVELPLPKPLYYEERRLGATYANFVFVNDALIMPF
                     YKDENDEIIRQRLAKALPKRKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            3088..>3351
                     /locus_tag="ACJFEZ_001708"
     CDS             3088..>3351
                     /locus_tag="ACJFEZ_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HGG0917795.1"
                     /translation="MNLQKKATLIASLCAIVLALIKFVVGITSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVSV"
BASE COUNT         1228 a          444 c          596 g         1083 t
ORIGIN      
        1 agtttctgcg gcgatttttg ttgttttggt gttgagtttt attgctatgc aattgatttt
       61 aaatttagac tttaaaaata ccgcagataa gatgagtaaa tctaatttaa ataccgttag
      121 ttcttctgtc tttcaaacca tgagaatggc tatgaattta ggtgatcctg aaaaaattca
      181 agaagccatt gaagatgcta aaacgataga aggtattagt gatattaaaa tttacccttc
      241 gaaagaaacc atagaacttt ttgagattaa aaaccctaaa atttcacaag aaaagctcat
      301 tatagatcaa tttacacagc ctaatttaat ttctttagag caaaagcttg ataatattaa
      361 tcacctaagg cttattcgtc ctttgatcgc agatgagagt tgtatagctt gtcatgccaa
      421 tgcaaatttg ggtagtgttt tgggtgttat ggatgtatat cattctttag aaaacataga
      481 aaaagatatt gcaaaaacga gtagatctta tatagtgatt tttactatag ctttaatttt
      541 tacgcttgta gtggtacttt ttgtgcttaa aatggttgta ggaaatccta ttatggaact
      601 tttaagccat gccaaagaat tagcacaagg aagtgggaat ttaagagcta ggataagggt
      661 taaagggcgt gatgaaatcg ctaaagcatg cgagtatatt aaccaattta tagagaaaac
      721 tcaaaaaaca gtaagcagtg caagtcttaa ctccaaaaat gtagaaaaac aaagcatact
      781 tttaaattct aatgctatag agcttaatga aatttcaact tctagtcatc aaaagataga
      841 ttctagtttt aagctaggcg ttgatatagg ggcggatttg gatgaaatat ctaatctttc
      901 tagcgatgca aataaagcaa atgataaatc ttatcagctc ttagatcaga tgatacactc
      961 acttcttgaa attgataaaa aagtaagtga tttagtgcaa aatgaaaaca acttggcact
     1021 aaaaattgaa aatatggtca aatatgcaca aaatatacaa aaagctacac aaatgatggg
     1081 cgaaatagca gacaaaacta atcttttatc tttaaatgca ggtatagaat ctgctagagc
     1141 gggtagttat ggtaaaggtt tttctgtcat tgctgaagat attagagctt tggctaataa
     1201 tagtgaggaa tttttacaca atgtagagct tataatcaaa gaactcctag agagcataca
     1261 agaggttact aaggaactta aggaaaattc tcatagtatt ttttcactca atgaaaatac
     1321 ccatttgctt gcaagtagtg caaacgaagt aaaactttgc aatcaaaatt ctaaaaatct
     1381 tgtgacccaa tgcactcaga ggattaaaat ttcgcaagaa aatattcaaa atttgcttat
     1441 acatatgcga gaaaatgttg aagcaagcgg taaaaatgag gaaatctcta aaattctact
     1501 tcaagtcgca gatgagttaa aaatagtgtg tcataattta gaaagtgaat tgagtcaatt
     1561 tcaaatttaa aggaaaaata tgaaaaaaac tttgcaaatt gttttaactg cagctttttt
     1621 tgctggttgt gctagcactt ctgtaaattc aaagtcaact tctaaaatca gcaatgaatt
     1681 tatgcaaaat cagctttttg aaatagataa aatcgtagtt aatggtaaaa cctttgatcc
     1741 taaaaatgct gaagaaaacc caaatatcag ttttgaaaat aataaatttt atggttatgc
     1801 aggatgtaat cgtttctttg gttcttatca aagtaatgaa aatactttag aaattcaagg
     1861 agatcgtgtc gcttcaactc aaatgctttg ccatcctttg gatgttatgg aatttgaaaa
     1921 tgcttttctt tcaaatttta aaggaagttt tacaatttca aataaaaatg gcaaattaat
     1981 ccttaacaac ggcgagatgg aaatattctt taaataacat gccacactcc ttagttagga
     2041 gtgtttttct tcgacttgac aaaaaactaa aaaatgatac aattataatt ttattatcaa
     2101 aaaaggtagt taaatgataa aatcaattcc cgaatggagt gagcaagaat atttaatgct
     2161 ttctttacct catgaaaaga gtgattggaa gccttattta ggagagatta tacaggctta
     2221 taaggatttt gttaaagcag caagtgaatt tcaaaaggtt ttacttatcg ctcctagtaa
     2281 aagcgacttt gctccatttg aaaatatagc aaatgtagaa ttttttgtat gtgatactaa
     2341 tgatacatgg atacgcgatt ttggtgctat tgatatttta gaagacaatc gtttaaaagc
     2401 tcttgatttt acttttaatg cttggggaaa taaatttcaa agcgagctag ataatgaagt
     2461 aaattctaaa ctttttaaag aaaaatttaa tgaaaagctt acaaaaatcg attttatttt
     2521 agagggtgga agtattgatt ttaatggtga aggcgtaatg cttacaagct ccaattgtct
     2581 tttaaatgaa aacagaaatt ctcatttaga caaaagccaa attgaagcaa aattaaaaga
     2641 aatttttggc ttaaaacaaa ttatttggct agaaaatggt tttataaaag gtgatgatac
     2701 agatcatcat atcgatactt tagcaagatt tatcgataaa aatactatag cgcattctat
     2761 ttgcgaagat gaaaaagatg agcattatat acccttgcaa aagatgaaaa aagaacttga
     2821 agccacaggg tttaatttag tagagctacc cttgccaaag cctttgtatt atgaagaaag
     2881 aagacttgga gccacttatg caaattttgt ttttgtaaat gatgccttga ttatgccttt
     2941 ttataaggat gaaaatgatg aaatcataag gcaaagattg gctaaggctt tacctaaacg
     3001 caagattata ggcgtagatg caagagtgtt tttacgccaa aatggctctt tacactgctc
     3061 ttgtcaaaac cgcttcaagg gtctaagatg aatttacaaa aaaaggcaac gcttatagca
     3121 agtttatgcg ctatagtatt ggctttgatt aaatttgtag tgggtataac aagcggttca
     3181 gtagctgtac tttcaagtgc gattgattct ttgatggact ttgcaatatc ggcttttaac
     3241 tttttagcct taaaaaaaag ttctcaaaaa gcaaacgaaa attataattt tggtttttct
     3301 aaaatcgaag ctttaatggg acttttagaa ggtgttttca tcgtatcagt a
//
LOCUS       DBBXRO010000151         3248 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.152, whole genome shotgun sequence.
ACCESSION   DBBXRO010000151 DBBXRO010000000
VERSION     DBBXRO010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3248
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.152"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..676
                     /locus_tag="ACJFEZ_001709"
     CDS             <1..676
                     /locus_tag="ACJFEZ_001709"
                     /inference="COORDINATES: protein motif:HMM:NF012920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HGG0917796.1"
                     /translation="NMNGENLKKLLKKHNLTQNELAEKLTAYGYRNGHGIKTAAISKY
                     ALGQRKMTAEFIEAVLKVLGETDANVLISDEPIEVQRIRITGSVSCGLPINDVYECQD
                     EFTYIPLSQNKSNLKAARANGDSMFPIIEDGDIIIYDTDSSKPRHGDLVVYTYNNEIA
                     CKIFVEKKDVGVIEFKPVNQSDSFKTTTFRIDIDDIDDLKIYKVVKIQKTPNNPKSNL
                     KLVNEN"
     gene            707..1720
                     /locus_tag="ACJFEZ_001710"
     CDS             707..1720
                     /locus_tag="ACJFEZ_001710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0917797.1"
                     /translation="MRKYNTKFKLHFARRSKYQYKRYPKRISKKAKHHKILDYNTEFD
                     LNPKNIDMLVDDVKFLSKKKRFTINFQKLKSFNIGMCLIFTSLLESCKNKKYSLNSKL
                     MPKDKYIRSMFKQTGIFDILCNEIIEERPGMLKILKINLDKDNYNMEEILLNIKSNLI
                     EFAIYNLRLQNSRVIVKKLLKVFMELLVNIAEHAKAFGQTIYLAGEIKGDKLRFAILD
                     KGIGFHHSMEQKNKDLLEKIKNRFSNLNYIELAFETNNPKYRKYSGEFAMRGNGTRRL
                     KETIKLIKDSKLQVVSKKDYYQLTSLSENSIKYENIKTHDAIGTLIYIELPIRECEKQ
                     WSK"
     gene            1720..2037
                     /locus_tag="ACJFEZ_001711"
     CDS             1720..2037
                     /locus_tag="ACJFEZ_001711"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917798.1"
                     /translation="MKIFNFEQEYTKSPFARDETHNKDKNGKDFEEKYLAKWIREKQK
                     VLIKADDLSTPFSDSFADASFCKWIRANKDEFDKYIKIDNETEDEQELHKTIKEVLDR
                     DKR"
     gene            2034..2363
                     /locus_tag="ACJFEZ_001712"
     CDS             2034..2363
                     /locus_tag="ACJFEZ_001712"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917799.1"
                     /translation="MNILDILNTLISAAAGFLISYYFYNKSKKKDILTELDLLLKDVN
                     LAYKNKNERKNTLIFIAYCLKNKTYILGDKLVYELEDVLFKNLENKTQTVVEIKDKFR
                     KYYEFVT"
     gene            2412..3053
                     /locus_tag="ACJFEZ_001713"
     CDS             2412..3053
                     /locus_tag="ACJFEZ_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HGG0917800.1"
                     /translation="MILPLLATLALADYTQYKPSEDFAKYFTKQSCSQVLDKFYYLNC
                     YDYNLKGTKAVAYRLEAENLKGEQIKKRPRFEDDTNIPKKYRTTWSDYRNSGYDRGHT
                     LSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVLNLVN
                     YDNNPQRIRNQIAIPSSYIKILKGENFKECYQVPNHEVDDEGIKKYKVNCDKI"
BASE COUNT         1417 a          368 c          492 g          971 t
ORIGIN      
        1 aaatatgaat ggagagaatt taaagaaact cttaaaaaag cataatttaa cacaaaatga
       61 gctagcagag aaattaaccg catatgggta tagaaatgga catggaatta aaaccgctgc
      121 aatttcaaaa tatgcattag gacaaagaaa aatgactgca gaatttatcg aagcggtttt
      181 gaaagttctt ggagaaactg atgcaaatgt tttaatatca gatgagccaa ttgaagtaca
      241 aagaattaga attactggct ctgtaagttg cggcttgcca attaatgatg tttatgagtg
      301 tcaagatgaa tttacttata taccattatc acaaaataaa tcaaatttaa aagcagctag
      361 agcgaatggc gatagcatgt ttcctataat tgaagatggg gacattatta tatatgatac
      421 agacagttca aaaccaagac atggagatct tgttgtttat acctataata atgaaattgc
      481 ttgcaagatt tttgtagaaa agaaagatgt tggagttatt gaatttaaac cagttaacca
      541 aagtgatagt tttaaaacga ctacttttag gattgatatc gatgatatcg atgatttaaa
      601 aatctataaa gttgtaaaaa ttcaaaagac accaaataac ccaaaatcta atttaaaatt
      661 ggtaaatgaa aattgaaacc tttaaaaatt ttatagagtc tgtaatatga gaaaatataa
      721 tacaaaattt aaattacatt ttgcaagaag aagtaaatat caatataaaa ggtacccaaa
      781 aagaataagt aaaaaagcaa aacatcataa aatattagat tataatacag aatttgatct
      841 aaatccaaaa aacatagata tgttagtaga tgatgtgaaa tttctatcta agaaaaaaag
      901 atttacaata aattttcaaa aattaaaatc ttttaatatt ggaatgtgtt taatttttac
      961 atcattgctt gaaagttgca aaaataaaaa atactcatta aactctaaat taatgccaaa
     1021 agataaatat ataaggagta tgtttaaaca aactggtatt tttgacatat tgtgcaatga
     1081 aatcatagaa gagcgaccag gaatgttaaa aattttaaaa ataaatcttg ataaagataa
     1141 ctacaatatg gaagaaatac tattgaatat aaaaagcaat ttaattgaat ttgccatcta
     1201 taatttaaga ttgcaaaatt caagagttat agttaaaaaa ttactaaagg tatttatgga
     1261 gttattagta aatattgcag aacatgctaa agcttttggc caaactatat atctagcagg
     1321 agaaattaaa ggagataaat taagatttgc aattttggac aaaggtattg gatttcacca
     1381 ttctatggag caaaaaaaca aagatctatt agaaaaaata aaaaaccgct tttcaaattt
     1441 aaattatatt gagctcgctt ttgagacaaa taatccaaaa tatagaaaat actctggaga
     1501 atttgcaatg agagggaatg gcacaagaag actaaaagaa accataaaat taattaaaga
     1561 ttctaaatta caggttgtat caaaaaaaga ttactatcaa ttaacttctt taagtgaaaa
     1621 ttctataaaa tatgaaaaca ttaaaacaca tgatgctata ggaacattga tctatatcga
     1681 attaccaatt agagaatgtg aaaaacaatg gagcaaataa tgaaaatttt taattttgaa
     1741 caagaataca caaagtcacc atttgctaga gatgagactc ataataaaga taaaaatggc
     1801 aaagattttg aagaaaaata tttagcaaaa tggattagag aaaaacaaaa agttttaatt
     1861 aaagctgatg atcttagcac tcctttttcc gattcttttg ccgatgctag tttttgcaaa
     1921 tggatcagag caaataaaga tgaatttgat aaatacataa aaattgacaa tgaaacagaa
     1981 gatgaacaag aattgcataa aacaatcaaa gaagttttag acagagataa gcgatgaata
     2041 tattagacat acttaatacc ttaattagtg cagctgctgg atttcttatt tcttattatt
     2101 tttacaataa atctaaaaaa aaagatattt tgactgaatt agacttactg cttaaagatg
     2161 tgaatcttgc atataaaaac aagaatgaaa gaaaaaatac attaatattt atagcatatt
     2221 gcttaaaaaa taaaacatat atattgggag ataaattggt ttatgaattg gaagatgtat
     2281 tgtttaaaaa cttagaaaat aaaacacaaa ctgtagttga aataaaagat aaatttagga
     2341 aatattatga atttgtcaca taaatacaag tttctatatt agaaagattt aaaaccaaat
     2401 gaaaaaaact tataatctta ccactgctag caactctagc cttagctgat tatacacaat
     2461 acaagccaag cgaagatttt gctaagtatt ttactaagca aagttgttca caagttttag
     2521 ataagtttta ttatctaaat tgttatgatt ataatctaaa aggcacaaaa gccgtagctt
     2581 atagattgga agcggaaaat ttaaaaggcg agcaaatcaa aaaacgccca cgctttgaag
     2641 atgatacaaa cattcctaaa aaatatcgca ctacatggag tgattataga aacagtggtt
     2701 atgatagagg gcacactctt tctaatgctt ctatgagaaa aacaactcaa gctcaaagaa
     2761 gcactttttt aatgagtaat attactccac aaaatccaca aatcaatcaa agggtttgga
     2821 acaagattga aaaaagagaa agacaagtag ctttgaagct tggaagttta gaagttttaa
     2881 atttagttaa ttatgacaat aatccacaaa gaataagaaa tcaaattgcc attccaagct
     2941 cttatattaa aatcttaaaa ggtgagaatt ttaaagaatg ttatcaagtg ccaaaccatg
     3001 aagtggatga cgagggtata aaaaaatata aggttaattg tgataaaata taatcctgtt
     3061 gtataaataa aggattttct atgctatctc taaatgctat aaacttatat gaagaaatgt
     3121 taaagtatga atttatatgg agtagtatta aaaattctag tttaaaaaag tttaaagatt
     3181 tacaagtaat acaacaagat tttacctctc aagatgcaaa ggaaaaaata caaaattttc
     3241 ttttaaat
//
LOCUS       DBBXRO010000152         3219 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.153, whole genome shotgun sequence.
ACCESSION   DBBXRO010000152 DBBXRO010000000
VERSION     DBBXRO010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.153"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            17..262
                     /locus_tag="ACJFEZ_001714"
     CDS             17..262
                     /locus_tag="ACJFEZ_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HGG0917801.1"
                     /translation="MALLITKDCVCCDACREECPDEAIYEHSPIYVIDADLCSECVND
                     FSEPACIVACPYECIIPDPDNVESIEELKLKNRNREF"
     gene            262..1722
                     /locus_tag="ACJFEZ_001715"
     CDS             262..1722
                     /locus_tag="ACJFEZ_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HGG0917802.1"
                     /translation="MAKKTAVVDLGSNSIRMVVFEKTSRYSFYTTCEYKRKVRLGENA
                     YNNGKILQEDSMQRAENALAFFKQCALKHKCKKIFIIGTSALRDAPNSKDFIKRIKDK
                     LNLNIRCIDGKNESYLGGLATLNLLSPFKDGTTLDIGGGSSELCLIKNNKIISCISLD
                     LGTVRLKELFYDKGKADALDDFIKPILEQIPSEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNIHDFRYMLEDEKEHILKIFNSKADALINFGIKKDRFDTIKEGIFIFLKIAEKL
                     KAKQIITSGVGIREGVYLQDLLRPKHTFPVNFNPSLKSLQDRFLQGNINNKTPYFSIQ
                     IFKVLQGLHKIHEKYQQSLLNAAKLCHLGEYLNFYFANEHSAYFILNGLNYGFSHQEK
                     VLIATLIKLNGKKVNPYNLEPYRQLLPNTHIISWLNFILSLAKILSTNENKIEIAFAN
                     NTLYIYSESKILDLPKDELKKITKPATIALAINQKP"
     gene            complement(1719..2510)
                     /locus_tag="ACJFEZ_001716"
     CDS             complement(1719..2510)
                     /locus_tag="ACJFEZ_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917803.1"
                     /translation="MKVLLLSILALPLFAVELISYNIYDRNDRVDLMLSFDSAYGGKI
                     SQKKEKNLTLLTLSDLKYSKEELKSLNSGLVDKISISSKDNNTYIMLQNKEPISLELS
                     SINDKFGVRIRAVQQGKESINPEQSNLSTNEEPILNSKKTSLEGYDYTNYILVMLVLF
                     VLLIMLWWLKRTLAFKNTGVSRDFRMVFQRFLDKNNQLIVFEYASKRYTMIVGNSNIV
                     LEEIEIPDYEPKVTEKSEKNFDSFFEENKKRIQSLIEQRQKNKKS"
     gene            complement(2510..2818)
                     /gene="fliN"
                     /locus_tag="ACJFEZ_001717"
     CDS             complement(2510..2818)
                     /gene="fliN"
                     /locus_tag="ACJFEZ_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HGG0917804.1"
                     /translation="MGSDIDFGDRHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(2818..>3219)
                     /locus_tag="ACJFEZ_001718"
     CDS             complement(2818..>3219)
                     /locus_tag="ACJFEZ_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HGG0917805.1"
                     /translation="SITHFFEHILRLHIEKAEDIVGELYGASIPVMEKSGREYHFYLF
                     FPKEFLQTIANVLVRDEKFKEDDWCDLSKECANQIIGYAKNLLNDAKGDDEYKLGIPE
                     YLGRVDFSSIILDESLTYSFENHYFRIGYCK"
BASE COUNT         1122 a          534 c          450 g         1113 t
ORIGIN      
        1 attttgaaag gtgataatgg ctcttttgat tactaaagat tgcgtatgtt gtgatgcttg
       61 tagagaagag tgtccggatg aggctattta tgaacatagt cctatctatg tgattgatgc
      121 tgatctttgt tcagagtgtg ttaatgattt ttcagaacct gcttgtatag tggcatgtcc
      181 ttatgaatgt atcatacctg atcctgataa tgttgaaagc atagaagagt taaaattaaa
      241 aaatcgtaat agagaatttt aatggcaaaa aaaaccgctg ttgtagactt aggatcaaat
      301 tccattagaa tggtggtttt tgaaaaaact tcgagatata gtttttatac tacttgtgaa
      361 tacaaacgca aagttagact tggagaaaat gcttataaca atggcaaaat tcttcaagaa
      421 gactctatgc aaagggctga aaatgctcta gcttttttta aacaatgtgc gctcaaacac
      481 aaatgtaaaa aaatattcat tataggtact tcagctttaa gagatgctcc aaattctaaa
      541 gattttatta aaagaattaa agataagcta aacttaaata ttcgatgtat tgatggaaaa
      601 aacgaaagtt atcttggcgg tcttgcaacc ttaaatttat taagtccttt taaagatggc
      661 accacacttg acataggtgg aggttcaagc gaactttgtc ttataaaaaa caataaaatc
      721 atctcttgta tttcattaga cttaggaacg gttagattaa aagaattgtt ctatgataaa
      781 ggtaaagcag atgctttaga tgattttatc aaacccattt tagaacaaat cccttctgaa
      841 ttttgcaatc aaaatctcat tgcaataggt ggaagtttaa gagccatttc aaattccatt
      901 atgcaaaaaa actcttatcc cttaaaaaat atacatgatt ttagatatat gctcgaagat
      961 gaaaaagagc atatcttgaa gatttttaac tctaaagcag atgcattgat taattttggt
     1021 atcaaaaaag atcgttttga tactattaaa gagggtattt ttatctttct aaaaatagca
     1081 gaaaaactca aagccaaaca aatcattact agcggggtag gcattcgcga gggtgtgtac
     1141 ttgcaagatt tgctacgccc taaacacact tttcctgtaa attttaaccc tagtttaaaa
     1201 tctctacaag atagatttct tcaaggaaat ataaacaaca aaacacctta tttttctata
     1261 caaattttta aagtcttaca gggtcttcat aaaatccatg aaaaatatca acaaagccta
     1321 ttaaatgccg caaaactttg tcatttgggt gaatatttga atttttactt tgctaatgaa
     1381 cactctgcat attttatttt aaatggatta aattatggct tttcacacca agaaaaagtg
     1441 ttgattgcaa ctcttattaa attaaatggc aagaaggtaa atccttataa tcttgagccc
     1501 tatagacagc ttttgccaaa cacgcatatc atttcttggt tgaattttat tcttagctta
     1561 gctaaaatac taagcacaaa tgaaaataaa atcgaaattg cttttgccaa caatacactt
     1621 tatatttata gtgagtcaaa aattcttgat ctacctaaag atgaactgaa aaaaatcacc
     1681 aaaccagcca cgatagcctt agctatcaat caaaagcctt aagatttttt attcttttgg
     1741 cgttgctcta taagactttg gatacgcttt ttattctctt caaagaaaga atcaaaattt
     1801 ttttcagatt tttctgtaac ctttggctca taatctggaa tttcaatctc ttctaataca
     1861 atattagaat tgcccactat catagtataa cgcttgcttg cgtattcaaa aactatcaat
     1921 tgattatttt tatctaaaaa tctttgaaat accatacgaa aatctctaga aacacccgta
     1981 tttttaaaag ctaaagttct cttaagccac caaagcatta taagcaagac aaataaaacc
     2041 agcattacta aaatgtaatt tgtataatca tagccttcta agcttgtctt tttagaattt
     2101 aaaatcggct cttcatttgt acttaaattg ctttgttcag gatttatgct ttctttacct
     2161 tgctgaaccg ctcttatcct aactccaaat ttatcattaa tagagcttaa ttctaaggag
     2221 attggctctt tgttctgtag catgatatat gtattattat ctttagaact gatactgatc
     2281 ttatccacaa gtcctgaatt taaacttttg agttcttctt tgctgtattt taaatcactc
     2341 aaggttaaaa gagtaagatt tttttctttt ttctgagaaa ttttaccccc ataagcacta
     2401 tcaaaagata gcattaaatc tactctatca tttctatcgt aaatattata actgattaat
     2461 tctacagcaa aaaggggcag tgcgagtatg ctcaataata aaactttcat taaatttctt
     2521 ttttgaaata ttgaagtacg gttttagaat ctagaatttc attaattcta attgctaaat
     2581 ttttctcata aaccataact tcgcccttac caaagatgcg cttattgata tacaattcaa
     2641 cactttcccc agcaggtttt tcaagatcga taaccgaacc tacttcaagt tttaaaagtt
     2701 cagctacact catattggta gtgccaagct cactaacaaa atctactgtg atatctaaga
     2761 tatcttcata agactgcaaa agtccgtgac gatctccaaa atcaatgtca ctgcccatta
     2821 tttacaatat cctattctaa aataatgatt ttcaaagcta taagttaaag attcatctaa
     2881 tataatagat gaaaaatcaa ccctacctaa atactctggt atgccaagtt tatactcatc
     2941 atctccctta gcatcattga gtaaattttt tgcatagcct atgatttgat tggcgcattc
     3001 tttacttaaa tcacaccaat catcttcttt aaatttttca tcacgaacta aaacattagc
     3061 aattgtttgt agaaattctt ttggaaaaaa taaataaaaa tgatattctc taccactttt
     3121 ttccattaca ggaatactgg ctccataaag ttcacctact atatcttcag ccttttcgat
     3181 atgaagtctt aggatatgtt caaaaaaatg tgttattga
//
LOCUS       DBBXRO010000153         3197 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.154, whole genome shotgun sequence.
ACCESSION   DBBXRO010000153 DBBXRO010000000
VERSION     DBBXRO010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.154"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            29..457
                     /locus_tag="ACJFEZ_001719"
     CDS             29..457
                     /locus_tag="ACJFEZ_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HGG0917806.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWAKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKFCKES"
     gene            complement(466..1495)
                     /gene="acr3"
                     /locus_tag="ACJFEZ_001720"
                     /pseudo
     CDS             complement(466..1495)
                     /gene="acr3"
                     /locus_tag="ACJFEZ_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847606.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter Acr3"
     gene            complement(1489..1911)
                     /locus_tag="ACJFEZ_001721"
     CDS             complement(1489..1911)
                     /locus_tag="ACJFEZ_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HGG0917807.1"
                     /translation="MKLAFICIHNSCRSQMAEALAKHKAEKMGVDIEVFSAGSDTSKG
                     VNSQAIRLIHEIYQINMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLK
                     DPSGSYDDEFKKIIQILDYKITALLQAIKTNSLKDFTC"
     gene            complement(1908..2225)
                     /locus_tag="ACJFEZ_001722"
     CDS             complement(1908..2225)
                     /locus_tag="ACJFEZ_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR/SmtB family transcription factor"
                     /protein_id="HGG0917808.1"
                     /translation="MQKFLTIISAINDESRVLVLYHLLKYQELCVCDLQKLLNMGQSR
                     LSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHSDLFENIKNLDIDIVVLENNTCK
                     DDK"
     gene            complement(2235..3182)
                     /locus_tag="ACJFEZ_001723"
     CDS             complement(2235..3182)
                     /locus_tag="ACJFEZ_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HGG0917809.1"
                     /translation="MQVFFNTFKEFLYLFVELSVLFIGISFLISIINQKYEGMFRKQL
                     SGDKISSYFKAIFLGALTPFCSCSTIPLLKAFLEARVKLSVCLAYLFTSPLINPIIFT
                     MLFVTFGLKLSLVYVLFLVIFIFIISLIFSKFKEEYFLKHTPKNSAPSIFTQNAKNIG
                     KIVFKPSSCCANTQNKTNDTKINFKKLFKESIANYKKLLPYIVIAVLIGALIHDFIPQ
                     EILQKYLSGNEILSIILAAFFGVLLYLRVETIIPIGLILLQMGISQGVIMSFLIAGAG
                     CSLPELVLLKQMFKMKFLLLFIAIILSVAISFGMLINFI"
BASE COUNT         1230 a          476 c          492 g          999 t
ORIGIN      
        1 tttattttta tcttaaaaag gagaaaatat ggcttatact ataaaaaaag tagaaaaaga
       61 aacaaaaatt agtgctcata ctttaagatt ttgggctaaa aaaggtttgt ttccttttgt
      121 tcaaaaagat gaaaatagtg tgaaatattt ttcaaaaagc gatatagaat gggcaaaatg
      181 gatagaatgg cttagaattt caggtatgcc aatagaacaa gtcaaacatt atataaaact
      241 ttgctctttg ggtataaaaa ctgccaaaga gagacaagag atgttaaagc aaacaaagaa
      301 aaaattacaa aaccagatta aaacattaaa agaaagtgaa aaagttttaa gcaaaaagat
      361 aaaaatttat gaagaaatgc ttgcaaatga agtcgatggg tttaatccag aaagcaagga
      421 ctatcaacct tgcgataagt tttgtaaaga atcatgaggc ttgattcatt ttttagaatt
      481 taaacttttg cctaatgccc attttacaag taagataagt acaggaactt ctactaaggg
      541 gcctataatg cttgcaaaag cttgttctga gtgaagccca aaagtagcaa tacaaatgat
      601 tatagctaat tcaaagttat ttccactagc actaaagcat aaagaacaag ttttaggata
      661 agaaagatga tttttcttag aaataaacca agttagaaaa aacatgaaga taaaatacaa
      721 agtcaaaaca aaggctattt ttaaagcttc taaaggcagg tgaaatactt catttgcttt
      781 gtaagaacac ataatgataa tagttgctag cagggtgata agagttatag ggctgatttt
      841 aggtaaaaag gtattttcgt accatcgttt gcttttgtat tttaaaagta gggttcttgt
      901 tataaaaccc attaaaaaag gaattcctaa ataaatcaaa acatttttac ttagagctga
      961 aaaatctata tctaaacttg tagctaaagt gctttgacct agtaattttg gtaaaaaatc
     1021 cagataaata taagccaaag tggaaaaaaa taaaatttga aaaatgctat tcatcgctac
     1081 taaagcactg gtgtattctc tatcaccttt tgctaaatcg ctccatacca ccaccattgc
     1141 gatacatctt gccaagccga tgatgataac tccttgcata tataaaggct cgtcttttaa
     1201 gaaaataaaa gctaagataa acataagcaa aagggcctat gaaccaattt aaaatcatag
     1261 aaagcaagat aactttttta gaatcaaata cctttgaaag ctttgcataa tcaaccttag
     1321 ccaaaggcgg atacatcatc aaaataagac ataaagtcaa tactacattt acagacttgt
     1381 actcaaataa attccaaaat aaagcgatat tggggaaaat gatacctaaa attaaaccca
     1441 aaaaaatagc taaaaatatc caaagcgtga gaaatctatc gataaaacct aacatgtaaa
     1501 gtccttaaga gaatttgtct ttatggcttg taaaagagct gttattttat aatctaaaat
     1561 ttgaattatt ttcttaaatt catcatcata acttccgcta ggatctttta atccaaaatc
     1621 aaaataatac cttgatttta agctaggaca agccacgcca caacccatac ttacgactat
     1681 gtctaaattt tgaggcaaag aatcaatgag tttagaataa tgctttttca tattgatttg
     1741 ataaatttca tgtataagtc ttatagcctg tgaatttaca cccttagaag tgtcgcttcc
     1801 tgcggaaaat acttcgatat ctacgcccat tttttcagct ttatgcttag ctagtgcttc
     1861 tgccatttga gaacggcagc tattgtgaat gcaaataaat gcaagtttca tttgtcatcc
     1921 ttgcaagtat tgttttctaa aactacaatg tcaatatcta gatttttaat attttcaaaa
     1981 agatcagaat gtagttttaa aagctcattg ttgataccat aatacgccca agttccctta
     2041 cgcttgacat ataaaaatcc tgcatctttt aaaattttta aatgtcttga aagtcttgat
     2101 tgccccatgt ttaaaagttt ttgcaaatca cacacgcaaa gttcttgata ttttaaaaga
     2161 tggtataaga caagcactct gctttcatcg ttgatcgctg aaatgatggt taaaaacttt
     2221 tgcatttatt ttccttatat gaaatttata agcataccaa aagatatggc tacgcttaaa
     2281 atgatagcta taaacaataa taaaaatttc atcttaaaca tttgcttaag taaaacaagt
     2341 tcgggtaaag aacaccccgc acctgcgatt aaaaaactca taatcacacc ttgagaaatt
     2401 cccatttgta aaagtatcaa gcctataggg atgatggttt ctactcttaa gtaaagcaaa
     2461 actccaaaaa acgctgctag gataatgctt aaaatttcat tgccacttag gtatttttgt
     2521 aaaatttctt gagggatgaa atcatggatc aaagctccta taagcactgc gattactata
     2581 tagggtagca attttttata gtttgcaata ctctctttaa aaagtttttt gaaatttatc
     2641 tttgtatcgt tagttttgtt ttgagtgtta gcacaacaag agcttggttt aaagactatt
     2701 ttacctatgt ttttagcatt ttgtgtgaaa atgcttgggg ctgagttttt aggagtatgt
     2761 tttaaaaagt actcttcttt aaattttgaa aaaataagag aaattataaa aataaaaatt
     2821 accaaaaaca atacatacac aagacttaat ttcaagccaa aggtaacaaa aagcatggtg
     2881 aaaatgatag gatttataag aggtgaggta aaaagataag ccaaacacac gctaagtttt
     2941 accctagctt ctaaaaatgc ttttaaaagc ggtatggtag agcaggagca aaaaggcgtt
     3001 aaagcaccta aaaatatagc tttaaaatag cttgaaattt tatctccgct cagttgtttt
     3061 ctaaacattc cttcatattt ttggttgata atgctaataa gaaaagaaat tcctataaaa
     3121 agcacagaaa gctcgacaaa tagatataaa aactctttaa aagtgttaaa aaatacttgc
     3181 attgtttttc ctaaaaa
//
LOCUS       DBBXRO010000154         3106 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.155, whole genome shotgun sequence.
ACCESSION   DBBXRO010000154 DBBXRO010000000
VERSION     DBBXRO010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3106
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.155"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            35..670
                     /locus_tag="ACJFEZ_001724"
     CDS             35..670
                     /locus_tag="ACJFEZ_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS607 family transposase"
                     /protein_id="HGG0917810.1"
                     /translation="MNKLIAIGQASKLLGVTIQTLRNWDKQGLLKPDEITKGGSRRYK
                     LESLKNINKNIKFNTDNLKTIAYARVSSHDQKDDLIRQVQVLELYCAKAGFNYEIIQD
                     LGSGMNYYKKGLTKLLNLILEGQVKRLVLTHKDRLLRFGAELVFAICEAKEVEVIIIN
                     KGDENIKFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDSMQEVINDNLS"
     gene            654..1922
                     /locus_tag="ACJFEZ_001725"
     CDS             654..1922
                     /locus_tag="ACJFEZ_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided endonuclease InsQ/TnpB family
                     protein"
                     /protein_id="HGG0917811.1"
                     /translation="MTISHKIELIPNNKAKTYFKKAFGCSRLAYNWGLAKWQEYYKQG
                     IKKTHLDLKKEFNAIKKEQFPFVYEVSKYATQQPFTHLNLAFNKFFRDLKQGKLSYPK
                     FKKKKDNQGSFYLGGDIIKFSTKNNKTYLKIPNLGKVRLREKLRFNGIINSATISQKA
                     NKYYASFSIEISDDEFHQTHKQALNSHQALGIDMGLNSFVSLSNGLEIKAPKPLDKLT
                     RKLASVSRQLSKKQHPKTKGDTTKKSNNYKKQSIKLGKLHTKITNIRSDFLHKLTTIL
                     IRHYAYFGIENLNIQGMMKNHHLAKAISDVSFYEFKRMLTYKAGYYKRVVIEADTFYP
                     SSKQCFVCKSKKEKLTLSQRMYQCENCGSILDRDYNAALNLQSLAQEKVGLVQAEFTP
                     EDLTALLDDLATNHLVTSKVETGIQQKSYL"
     gene            1973..2656
                     /locus_tag="ACJFEZ_001726"
     CDS             1973..2656
                     /locus_tag="ACJFEZ_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic/DOC family protein"
                     /protein_id="HGG0917812.1"
                     /translation="MIDKVLKFLDDGIPKNDFDRQLLASNLVGATNLIELNKKERIIT
                     LQAAKKLELNPIKGNFDYQHLKDIHKALFEDVYTWAGQDRMQMGLKEKFAKYAPNGAI
                     INFVPGKELDKYSKIIFDELAKNNYLKNSKDLNHFAKNLAKFMGEINALHPFREGNGR
                     TQRIFLNELAKNAGYKLDLNLISKHKMIHACVEASQLKPGRLEALIKDNLKNFRQNLD
                     LEQNKGMSL"
     gene            2661..>3106
                     /gene="lepB"
                     /locus_tag="ACJFEZ_001727"
     CDS             2661..>3106
                     /gene="lepB"
                     /locus_tag="ACJFEZ_001727"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HGG0917813.1"
                     /translation="MRKAIAIFAFSFAFLLILSYLIFYFGGFHFNYTRSMPLGLYKEI
                     NSSTLNKNDIVLLKIPQKKEILLKKIIAVNGDFVEVNTQGVFINESLLPNSKIFSFDS
                     EGNLLEFKPFKRKLKENELFVIGENIKSYDSRYFGVVNILQNEVKKV"
BASE COUNT         1239 a          415 c          487 g          965 t
ORIGIN      
        1 gacatttata ctaaaaattt gttagaatta tcttatgaat aaattaatcg caataggaca
       61 agcttcaaaa cttcttggtg ttacaatcca aactttacgc aattgggata agcaaggctt
      121 attaaagcct gatgaaatta ccaaaggcgg tagtcgtaga tacaaattag aatctttaaa
      181 aaatataaac aaaaacatta aatttaacac tgataatcta aaaaccattg cctatgccag
      241 agtcagtagc cacgaccaaa aagatgattt gataagacaa gttcaggttt tagagcttta
      301 ttgtgctaag gctggattta attacgaaat tatccaagat ttaggcagtg gtatgaatta
      361 ttataaaaaa ggactaacaa agcttttaaa tcttatctta gaaggacagg ttaaaagact
      421 tgttttaaca cacaaagata gactactaag atttggagct gaacttgttt ttgctatttg
      481 tgaagctaaa gaagttgaag ttattattat taataaaggc gatgagaaca ttaaatttga
      541 agaagaatta gcaaaagatg tcttagagat tatcacggtc ttttctgcta ggctttatgg
      601 tagtagaagc aagaaaaaca aaaagctttt agattctatg caagaggtta tcaatgacaa
      661 tctctcataa aatagaactt atcccaaata ataaagcaaa aacatatttt aaaaaagcct
      721 ttggttgttc tcgcttagca tataattggg gactagctaa atggcaagaa tactataagc
      781 aaggcattaa aaagacacat ttagatttaa aaaaagaatt taatgccatt aaaaaagaac
      841 aattcccctt tgtctatgaa gtaagcaaat atgctacaca acagcctttt acccatttaa
      901 atttagcctt taataaattc tttagagatt taaaacaagg caaactatcc tatccaaaat
      961 ttaaaaagaa aaaagacaat caaggctctt tttatttagg aggagatatt atcaaattta
     1021 gcacaaaaaa taataagact tatttaaaga ttccaaatct tggtaaagtt agattaagag
     1081 aaaaattgag atttaatggc ataataaact cggctaccat tagtcaaaaa gcaaataaat
     1141 attatgcctc ttttagtatt gaaataagtg atgatgaatt tcatcaaaca cacaaacaag
     1201 ctttaaattc tcatcaagct ctaggtattg atatggggct aaattctttt gtaagtttat
     1261 ctaatggttt agaaattaaa gcacctaaac cactagacaa gcttacaaga aagcttgcta
     1321 gcgttagcag acaacttagt aaaaaacaac acccaaaaac caaaggtgat actactaaga
     1381 aatctaataa ctataaaaag caatctatta agcttggcaa actacacact aaaataacta
     1441 atattagaag tgattttttg cataaactca caacaatact tattaggcat tatgcttact
     1501 ttggaataga aaatttaaat attcaaggaa tgatgaaaaa tcatcattta gcaaaagcca
     1561 taagtgatgt gagtttttat gaatttaaaa gaatgctgac ttataaagca gggtattata
     1621 aaagagttgt tattgaagct gatacctttt atcccagctc aaaacaatgc tttgtctgca
     1681 aaagtaaaaa agaaaagctc acgctttctc aaagaatgta tcaatgtgaa aattgtggtt
     1741 ctatcttaga tagagattat aatgctgctt tgaatttgca aagtttagca caagaaaaag
     1801 taggtttagt tcaagccgaa tttacgcctg aggacttgac ggctctacta gatgacttgg
     1861 caacaaatca tctagtaacc agcaaggttg agacaggaat acaacagaaa tcttatttat
     1921 agatttttat atctattcat aggattttat aggtttgtag gaacgggtgt aaatgattga
     1981 taaagttttg aaatttttag atgatggtat tcctaaaaat gattttgata gacaactttt
     2041 agcttctaat ttagtaggcg caacaaattt aatagagtta aataaaaaag aaagaataat
     2101 aactctacaa gccgctaaaa aattagagct taatccaatt aaaggcaatt ttgactatca
     2161 acacttaaaa gatatacata aagcactttt tgaagatgtt tatacttggg cgggacaaga
     2221 tagaatgcaa atggggctaa aagaaaaatt tgcaaaatat gcacccaatg gagcaattat
     2281 taattttgtt cctggaaaag agttagataa atactctaaa ataatttttg atgaacttgc
     2341 aaaaaataat tatctaaaaa actccaaaga tctaaatcat tttgcaaaaa atttagcaaa
     2401 atttatgggc gaaatcaatg ctttacaccc ctttagagaa ggtaacggca gaactcaaag
     2461 aatattttta aatgaattag ctaaaaatgc aggttataaa cttgatttaa atttaatttc
     2521 taagcataaa atgatacatg cttgcgtaga agcttcacaa ttaaaacctg gaagattgga
     2581 ggctttaatt aaagacaatc taaaaaactt tagacaaaat ttagatttgg agcaaaataa
     2641 aggaatgtcg ttataatact atgagaaaag ccattgcgat atttgccttt tcttttgcgt
     2701 ttcttttaat actctcatat cttatttttt attttggtgg ttttcatttt aattatacaa
     2761 gatcaatgcc tttgggctta tacaaagaga ttaactcttc cactttaaac aaaaacgata
     2821 ttgtgctttt aaaaatacca caaaagaaag aaattttatt aaaaaagatt atcgcagtaa
     2881 atggcgattt tgtagaagtt aacacgcaag gtgtttttat taatgaaagt cttttgccta
     2941 attctaaaat tttttcattt gatagcgaag gtaatttact agaatttaaa ccctttaaac
     3001 gcaaattaaa agaaaatgaa ctttttgtaa taggcgaaaa tataaaaagt tatgatagta
     3061 ggtattttgg agttgttaat atactccaaa atgaagtaaa aaaagt
//
LOCUS       DBBXRO010000155         3045 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.156, whole genome shotgun sequence.
ACCESSION   DBBXRO010000155 DBBXRO010000000
VERSION     DBBXRO010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3045
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.156"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            19..2338
                     /gene="hsdR"
                     /locus_tag="ACJFEZ_001728"
                     /pseudo
     CDS             19..2338
                     /gene="hsdR"
                     /locus_tag="ACJFEZ_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778499.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0015666 - restriction
                     endodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="EcoAI/FtnUII family type I restriction enzme
                     subunit R"
     gene            2328..2918
                     /locus_tag="ACJFEZ_001729"
     CDS             2328..2918
                     /locus_tag="ACJFEZ_001729"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917814.1"
                     /translation="MQDKDNIKTYYECLKELSKEELYEGLLGYGMFADRIPNFLTSEY
                     FFEFCKSNKPSFEQKEYRYIKYESMRNINVPRVLSIPNPFAYYKQCKILKEYWKKLQR
                     YFYKKTKSNKYKISRIHIRKLYEKKLIDNKYYDVEIEKIFIMNFKNYKLDGTPEQEIF
                     IGKGYKVNADISNCFPSIYTHSIPWVLIGKIGAKKK"
BASE COUNT         1223 a          412 c          560 g          850 t
ORIGIN      
        1 tttcactttg gggtaaaaat gcaaaattta tattcagaag atgatacaag ggttaagctt
       61 atagacgcaa agctttatgc tagttcttgg agtgaagaaa atatcataag gaattattat
      121 ttcaccgatg gacgcaaact cataggcaac aaaagagctg aaagaaaatt tgcagattat
      181 ttgctcaaat ttcaaaacaa caatcttgcc atcatagaag ctaaaaaaca aaacaaagac
      241 gccttagatg gcttatctca aggtatagaa tacgctaaaa ctttaaatgt gccttttgtt
      301 tatagcacta atggcgataa aatttatgag tatgatttaa gggtttcaag gggtgagtat
      361 atagaaaatt ttccaagccc taacgaactt tttcaaagag tttatggaaa tttaaaagaa
      421 tggcaataca aacttttaac tcaaagagaa ttatacatac ctcaaaaaac attaagatac
      481 taccaaaaaa tagccgtaga taaagtcata gaagctttaa tcaatgggta aagatagaat
      541 tttacttacc cttgctaccg gcacaggtaa gacgactata gcttttgctt tgtgttatcg
      601 tttgcttgaa gcaagatgga ataaagaaaa caaagaccaa aaacctaaaa tattgttttt
      661 atgcgataga gtgagcttaa gagatcaagc tttgggagaa tttaacgcag tagaaagcga
      721 ttgtaaagta atcagcgcag aagagattag aaaaaatgat ggaaaaatca tcaccaacgc
      781 aaatgttttc tttggaattt atcaaagtct agctgcaaat tctaaagatc aagaaaatac
      841 ccaagaagaa caagagagca aattttatct acaataccca aaagattttt ttgaccttat
      901 catcatcgat gagtgtcaca gaggcggagc aaacgaagaa ggaaactggg cgtgcgtact
      961 agagcacttt tcatcagcta ctcatttagg acttactgcc acacctaaaa agagtgataa
     1021 tgtagacact tacaggtatt ttggtgaaag tgcgtatgag tatagcctaa aagagggtat
     1081 agaagatggc tttttaaccc cttataaggt aaaacgcatc accaccacac ttagcgaagg
     1141 ctatgtatat aatcctgatg atctcataga aggagagcta gaaaaaggat tttataaaat
     1201 gagtgaattt gaaagaaata tccatctacc tcaatataat gattttctag ctaaagaaat
     1261 tttaaaactt atagatccta tggataaaac catcatcttt tgtgccaatc aagctcacgc
     1321 aagcgatata aaaagagcta ttgataaatt taaaagtgtt aaaagagatg attattgtgt
     1381 aagagttacg agcgatgagg gtaagatagg acttgaatat ttaaaacaat ttcaagacaa
     1441 tgacaaaagc tatcctgtaa tccttacaag ctctaaaatg ctaaccacag gcgtagatgc
     1501 tagaaatgtc cgcaacatag tacttttggc aaatataggc tctatcatag aatttaaaca
     1561 aatcataggg cgaggcacta gagtgtatga aggaaaagac ttttttacca tcatagattt
     1621 tgtaggtgcg acaaagttat tttatgatcc aaaatgggat ggcgaacaag tcaaagatga
     1681 agataaagaa gataaaagcg aaatttgggg caagcaaaat aaaaaagaat cagacaaaac
     1741 aaaagaaaca gaaagcaaaa aagcaatcac cgtgcattta aaaggcacaa aactcaaagt
     1801 gcttgacata aacacaagct atctaggaag taatggcaaa ccacttagca ctaaagaatt
     1861 tttagaattt ttgataggca agctagcaga atactacgac gatgaagtaa aacttcgtga
     1921 aatttggagc aaacaagaaa ctaggctgaa tttcttaaaa acccttgaaa aagatggagt
     1981 ggatgaaaat gccttgaaag atttgggtga aatttttgat aaaaaggatt gtgatatata
     2041 tgatgttttg gcgcatttga gttttaatgc tgagatcaaa acaagacaag aacgcgtttt
     2101 gcaagtagaa aagagtgaat ttttaaaacg cttccaaaaa gaaaaagctc tgaaattcat
     2161 agaattttta ctcggtagat atcagcaata cggcataaaa gattttgata gaagcttagc
     2221 tcctttgata gagcttagct ctttaggtaa tgtaaaagaa atagtcagtg aatttggcgg
     2281 ggtggagaat ttaaagcaaa gtgtagacga tttgcaaagg gagatttatg caagataaag
     2341 ataatataaa gacatattat gagtgtctta aagaactgtc taaggaagaa ctttatgaag
     2401 gattattagg atatggaatg tttgcagata gaataccaaa ttttttaact tctgaatatt
     2461 tttttgagtt ctgcaaatca aataagccat cttttgaaca gaaagaatac agatatatta
     2521 aatacgaaag catgagaaat attaatgttc ctagagtttt atcaatacca aatccatttg
     2581 catattataa acaatgtaaa attttaaaag aatattggaa aaaattacaa agatattttt
     2641 acaaaaaaac aaaaagtaat aaatataaga ttagtcgtat tcatattaga aagctatatg
     2701 aaaaaaaact tattgataat aaatattacg atgtagaaat agaaaaaatt ttcattatga
     2761 attttaaaaa ctataaactt gatgggacgc cggaacaaga aatttttatt ggtaaaggat
     2821 ataaggtaaa tgcagatatt tcaaattgct ttcctagcat atacacacac tcgatacctt
     2881 gggttttaat tggaaaaatt ggtgctaaaa aaaaataaag gttttacgaa attatattac
     2941 aataagatag ataatgctac acaatggctt aattatggag aaacacatgg aatcttaata
     3001 gggcctcata gttcaaactt aatctcagag attattttgg ttgca
//
LOCUS       DBBXRO010000156         2954 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.157, whole genome shotgun sequence.
ACCESSION   DBBXRO010000156 DBBXRO010000000
VERSION     DBBXRO010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2954
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.157"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..719)
                     /locus_tag="ACJFEZ_001730"
     CDS             complement(<1..719)
                     /locus_tag="ACJFEZ_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HGG0917815.1"
                     /translation="MLTWMQHHKKYLVVTIWISTIAFVGAGFLGWGAYDFNLNRSSSV
                     AVVGDEKINYNEFNVRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVEDKLLLN
                     FAKDLGLGSSENEVIQALAETKAFQDPSGDFNKTIYYELLNANNMTPKEYEKTLSNEI
                     IIGKLEQIFNLPQTDEELKMLGASYFMQDSLNIAKLEQDKENIKVNEEELKKLWNEHK
                     EDYKTKKVYEISTYYLPVDMQ"
     gene            872..1807
                     /gene="rsmH"
                     /locus_tag="ACJFEZ_001731"
     CDS             872..1807
                     /gene="rsmH"
                     /locus_tag="ACJFEZ_001731"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HGG0917816.1"
                     /translation="MKIPHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHP
                     NLKLIACDQDKEALEFSKKRLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIG
                     VSSYQLDNNKRGFNLHSDFLDMRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGY
                     FIAQKICQERQKNKIKSAKELYEIIGKTKQNHRSVSKATLVFQAIRIEVNQELEVLKN
                     FLEKLEKIKLKNCILAIICFHSLEDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGE
                     IISKKAITPSKEEIMINSRSSCAKMRLFHFKNMEK"
     gene            1807..2694
                     /locus_tag="ACJFEZ_001732"
     CDS             1807..2694
                     /locus_tag="ACJFEZ_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917817.1"
                     /translation="MLDDDFLKEKQNIRQKMLKFSRAVNQGKPLDDDLKEEISSDDIL
                     RRRFKKRSNHFLDEIEEDYELEYTKKSNIYLKEDLINVKLEEKQSLAKKIFSKIKEKN
                     KNQEPKKKKTKKLFSFLKKKEIQGIQNKNTHNTQEKHLHTDKQIEIKKIQNNKIQPTQ
                     TDPKPDIKQSLENLQKKIQTQEVKIEIEKSEIQPIKTEHDEDTQKVKNVLLEGFSNAT
                     KEDKNLNFNHLLFAVLFVSFALVLFVPQIYIRNQIYYLSREIATLRVEESVLDEENKD
                     LKRRLEIMRFQNQILDYLE"
     gene            complement(2682..>2954)
                     /locus_tag="ACJFEZ_001733"
     CDS             complement(2682..>2954)
                     /locus_tag="ACJFEZ_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917818.1"
                     /translation="LFTRLDFHISIISAVAVTACVFISYDIFKVYARKMISKKLIQKA
                     WALHFPYFSYEKYSIMAGNFYKEALKEEIPKANLEQYVLEKIIHSK"
BASE COUNT         1178 a          426 c          393 g          957 t
ORIGIN      
        1 ttttgcatat ccaccggtag ataataagta gaaatctcat atactttttt tgtcttataa
       61 tcttctttgt gttcattcca aagcttttta agctcttctt cattaacttt tatattttct
      121 ttatcttgct ctagttttgc tatatttaaa gaatcttgca taaaataact agctcctagc
      181 attttcaact cttcatctgt ttgagggaga ttgaatattt gttctagttt gccgataata
      241 atttcatttg aaagagtttt ctcatattct tttggagtca tattgtttgc attcaaaagt
      301 tcataataaa ttgttttatt aaaatcacct gaaggatctt gaaaggcttt agtttcagca
      361 agtgcttgaa taacttcatt ttcacttgaa cctaatccca aatctttagc aaaatttaac
      421 aaaagcttat cttcaaccaa agagcttaat gcagcatttt caattcccaa ttgcttagca
      481 ctctcctcat ttaagccacc gttgctaatt tgattgtaat aattaaaaat ctgattatat
      541 cttacattaa attcattata attgattttt tcatctccaa ctacagcaac actcgaactt
      601 ctattaagat taaaatcata agcaccccaa cctaaaaacc cagctccaac aaaagctatg
      661 gtgctaatcc atatagtaac aacaagatat tttttgtgat gttgcatcca agtaagcata
      721 tcattccttg ataaaaatta aactacatat tttatcgcag aagtgtttaa ttagagttta
      781 attagtggtt ttttgttaaa tattttcatt ttgattttag ttaaaatttc gttataatta
      841 tagcttataa aaattttata ggatatagga tttgaaaatt ccacacattc ccgttttgct
      901 caatgaggta aatcaagcat ttgaaaaact aaactcagga tattttttag attgtacttt
      961 gggttttggt ggccatagcg aatccttact taaagatcat ccaaacctta aacttatagc
     1021 atgcgaccaa gacaaagaag cgcttgaatt ttctaaaaag cgtcttcatg attttaaaga
     1081 tagaacagaa tttgtattaa gtaattttag tcaaatttta gaccaaattt cacacgataa
     1141 actgaacgat ctcaaaggca ttttagctga tattggagta tcttcttatc aacttgacaa
     1201 taacaaacga ggctttaatc ttcattctga ttttttagac atgagaatga atcaagatgc
     1261 taaaatttca gcttttgaga ttattaataa ttatacccaa gagcaattga gtgatatttt
     1321 caaaaaatat ggggaattaa atgatgggta ctttatcgct caaaaaattt gccaagaaag
     1381 acaaaaaaat aaaataaaaa gtgctaaaga actttacgaa ataataggaa aaacaaaaca
     1441 aaatcacaga agtgtttcta aagcaaccct agtttttcaa gctattagaa tagaagtcaa
     1501 tcaagaactt gaagttttaa aaaatttttt agaaaaatta gaaaaaatta aattaaaaaa
     1561 ttgtattcta gctatcattt gctttcattc tttagaagat aggatagtaa aaaactattt
     1621 taaaaaatgg gctaaaaatt gtatctgtga tgaaagagct tttaggtgcg aatgtggaaa
     1681 caatcattct ttaggagaaa ttataagcaa aaaagctata actccaagca aagaagaaat
     1741 tatgattaat tctcgttcaa gttgtgcaaa aatgcgcctg tttcatttta aaaatatgga
     1801 aaaataatgc tagatgatga ttttttaaaa gaaaaacaaa acatacgcca gaaaatgctt
     1861 aaattttctc gcgctgttaa tcaaggtaag cctttagatg atgatttaaa agaagaaatc
     1921 tctagtgatg atattttaag acgccgcttt aaaaaacgct caaatcattt cttggatgaa
     1981 atagaagaag actatgagtt agaatataca aaaaaatcaa atatatactt aaaagaagat
     2041 ttgataaatg ttaaattgga agaaaagcag tctttagcta aaaaaatttt ttccaaaata
     2101 aaagaaaaaa acaaaaatca agaaccaaaa aagaaaaaaa caaaaaaact tttttctttt
     2161 ctgaaaaaaa aagaaattca aggtatacaa aataaaaaca cacacaatac tcaagaaaaa
     2221 catttgcata cagacaagca aatagaaatc aaaaaaatac aaaataacaa gattcaaccc
     2281 acgcaaactg acccaaaacc cgatataaaa caaagtctag aaaatttaca aaaaaaaata
     2341 caaactcaag aagtaaaaat agagattgaa aaatccgaaa ttcaacccat taaaacagaa
     2401 catgatgaag atacacaaaa ggttaaaaat gtattactag aaggatttag taatgctact
     2461 aaagaagata aaaatctcaa tttcaatcac ttactttttg ccgtattatt tgtcagcttt
     2521 gctcttgttt tatttgtacc acaaatttat ataagaaatc aaatttacta tcttagccga
     2581 gaaattgcca ctttaagagt agaagaaagc gtacttgatg aagaaaataa agatttaaaa
     2641 agacgcttag aaatcatgcg ctttcaaaat caaattttag attatttaga atgaatgatt
     2701 ttttctaaaa catattgttc taaatttgcc tttggaattt cttcttttaa ggcttcttta
     2761 taaaaatttc cagccataat agaatatttt tcatatgaaa aataaggaaa gtgcaaagcc
     2821 catgcttttt gtattaattt ttttgaaatc attttacgag cataaacctt aaaaatatca
     2881 taagaaataa aaacacatgc ggtaaccgct acagcgctga taatactgat atgaaaatca
     2941 aggcgagtaa aaag
//
LOCUS       DBBXRO010000157         2894 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.158, whole genome shotgun sequence.
ACCESSION   DBBXRO010000157 DBBXRO010000000
VERSION     DBBXRO010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.158"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1997
                     /locus_tag="ACJFEZ_001734"
     CDS             <1..1997
                     /locus_tag="ACJFEZ_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HGG0917819.1"
                     /translation="HKDNHPLNFKFKSGVQVKENYNLDSFIQLSAASCFMNIGYLDKL
                     LFDEKLKPNFEDAKFINEYLLDNINLKSAFLPTVKYFYRKREDGNSTLDNSNKYSDLY
                     LLVSRRGCLKLLQENKFYDIFIQNVCLYHFFWQIKTLVNSPEKLSFMSESEKQRYLEL
                     LDQNFSYIDKNTIMEFNLAGCWFFHKVGILNCFKNEKPPFQIAYIEDYDPYKEQILLT
                     YYTGDDEDIESILVDGEEVYADYKKIVKYDFLDRAFCYQKRLWVHIPKNAKDKLEMFI
                     NDEQSMIGKYDEYFLNIKNIRQEFQKRLPKSNIWLLMDRDYEADDNAEHLYRYIMQNH
                     PEQKIVFALRKESLDWERLEKEGFNLVEFGSLEFERIIKKASKVISSHADGYLTRYIT
                     SKQQFIFLQHGVIKNDLSKWLNSKKIDLFITSTKAEYDSIANDYNHYKFGKKEVVLTG
                     LARHDALLKNNQCNARQIVIMPTWRANIVGVALGSSKRGLQSDFTQSEYFKKWNLLLN
                     SNILQKLCEKYDYTVVFNPHRNIIPYLKEFNIPSYIKIASQNESLQKLFCNSSLMITD
                     YSSVAFEMAYLNKPVIYYQFDHEEFFSSHTLQKGYFDYEKDGFGPVVENEENLLKQLE
                     NLLQNDCNPFGIYKDNIDLTFAFKDGKCCERIYKILRQII"
     gene            1994..>2894
                     /locus_tag="ACJFEZ_001735"
     CDS             1994..>2894
                     /locus_tag="ACJFEZ_001735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917820.1"
                     /translation="MSNKRLAIHLYGMIRTYKRTYESFLKNVIKANELDGWEIDIFMH
                     IWDVFNLVDNSTWHKKNNYFPTMNNKKLTNEDIEDIKAIYSPARFQIDSDTREYGRYE
                     SIKRAMKLREEYESEYNIKYDWFLTTRTDIFFMNPLKISHYIDFYSQHVEFKYFGIAD
                     KMNFCVSYPFRGGGIQVMDHRHPNESDILWFSNYCSNQGMDPLISYKDKNIVNVFIKY
                     QLNVDCFQVREITKQLQPNITVSKMTIDQYEDKVTLLQNQIKDKENQIKKIQSGLKDI
                     SHRKQELEILDLEYGISLKKKHIE"
BASE COUNT         1132 a          295 c          476 g          991 t
ORIGIN      
        1 tacataaaga taatcatcca ttaaatttta aattcaaaag cggtgtacaa gttaaagaaa
       61 attataatct tgatagcttt atacaattat ctgctgctag ttgttttatg aatattggat
      121 atcttgataa attattattt gatgaaaaac taaaacccaa ctttgaagat gctaaattta
      181 taaatgaata tttgttggat aatatcaatc taaaaagcgc tttcttacca acagtcaaat
      241 atttttatag aaaaagggaa gatggaaatt ctactttaga taattccaat aaatattctg
      301 atttatattt attagtttca cgtagaggtt gcttaaaact tctgcaagag aacaaatttt
      361 atgatatttt tattcaaaat gtttgtttat accatttttt ttggcaaatt aaaactcttg
      421 ttaattctcc tgaaaaatta tcttttatga gcgaaagcga aaaacagaga tatttagaac
      481 tgttagatca aaatttttcc tatatagata aaaatacaat aatggaattt aatttagcag
      541 gttgctggtt ttttcataaa gtgggaattt taaattgctt taaaaatgaa aaaccaccat
      601 ttcaaatagc ttatatagaa gattatgatc catataaaga acaaatttta cttacttatt
      661 acactggaga tgatgaggac atagaaagta ttcttgtaga tggagaggaa gtatatgcag
      721 attataaaaa gatagttaag tatgattttt tagatagagc gttttgctat caaaaaagat
      781 tatgggttca tattccaaaa aatgctaaag ataagttaga aatgtttatc aatgatgagc
      841 aaagtatgat tggcaaatat gatgagtatt ttctaaatat taaaaatatc agacaagaat
      901 ttcaaaaaag actaccaaaa agtaatattt ggcttttgat ggatagggat tatgaagcag
      961 atgataacgc agagcattta tataggtata taatgcaaaa tcatccagaa cagaaaatag
     1021 tttttgcatt aagaaaagaa agtttagatt gggaaagatt ggaaaaagaa ggatttaatc
     1081 tagtagaatt tggaagttta gagtttgaaa gaattataaa aaaagcttca aaggttataa
     1141 gttcccatgc tgatggttat ttaacaagat atattacatc caaacaacaa tttatttttt
     1201 tgcaacatgg ggtaataaaa aatgatcttt ctaagtggct taattctaaa aagatagact
     1261 tgtttataac ttcaacaaag gccgaatatg attctatagc aaatgattat aatcactata
     1321 aatttggaaa aaaagaagtg gttttaacag gtcttgcaag gcatgacgct ttattgaaaa
     1381 ataatcagtg taatgctcgg caaattgtta taatgcctac atggagagca aatatcgttg
     1441 gtgtagcttt aggttctagt aaaagggggt tgcaaagtga ttttacacag agtgaatatt
     1501 ttaaaaaatg gaatttatta ttaaatagca atatcttgca aaaattatgt gaaaaatatg
     1561 attatactgt agtttttaat ccacatcgta atattatccc ctatttaaaa gagtttaata
     1621 tcccttctta tattaaaata gctagccaaa atgaaagttt gcaaaaatta ttttgtaatt
     1681 catctttaat gataactgat tattctagcg tagcttttga gatggcgtat ttaaataaac
     1741 cagtgattta ttatcaattt gatcatgagg aattttttag ctctcatact ttacaaaaag
     1801 gatattttga ttatgaaaaa gatggttttg gtcctgttgt ggaaaatgaa gaaaatttat
     1861 taaaacagct tgaaaactta ttgcagaatg attgcaatcc ttttggtatt tataaggata
     1921 atatagattt aacttttgct tttaaagatg gtaagtgttg cgagagaatt tataagatat
     1981 taaggcaaat aatatgagca ataagagatt ggcaattcat ttatatggaa tgatacgtac
     2041 atataaaaga acttatgaaa gttttctaaa aaatgtaatt aaagctaatg agttagatgg
     2101 atgggaaatt gatattttca tgcatatatg ggatgttttt aatctcgttg ataatagtac
     2161 gtggcataaa aaaaataatt attttccaac tatgaataat aaaaaattaa ccaatgaaga
     2221 tattgaagat attaaggcta tatattctcc tgctaggttt caaattgatt ctgatactag
     2281 agagtatggc agatatgaga gtattaagcg agcgatgaag cttagagaag agtatgaaag
     2341 tgagtataat ataaagtatg attggttttt aaccactaga acagatattt tttttatgaa
     2401 tccattaaaa atttctcatt atattgattt ttactctcaa catgttgaat ttaaatattt
     2461 tggtattgcg gataaaatga atttttgcgt atcttatcct tttagaggag gaggaataca
     2521 agttatggat cataggcatc ctaatgaaag tgacatatta tggttttcta attattgttc
     2581 taatcaaggc atggaccctt tgatatccta taaagataag aatatagtta atgtatttat
     2641 caaatatcaa ttaaatgtcg attgttttca ggtgagagaa ataacaaaac aacttcaacc
     2701 aaatattaca gtaagtaaaa tgactataga tcagtatgaa gataaggtta ctttgttgca
     2761 aaatcaaatt aaagataaag aaaatcaaat taaaaaaata caatcagggc taaaggatat
     2821 ctcacataga aaacaagaat tagaaatttt agatttagag tatggcattt ctttaaagaa
     2881 aaaacatatt gaag
//
LOCUS       DBBXRO010000158         2857 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.159, whole genome shotgun sequence.
ACCESSION   DBBXRO010000158 DBBXRO010000000
VERSION     DBBXRO010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2857
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.159"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(2..1339)
                     /locus_tag="ACJFEZ_001736"
     CDS             complement(2..1339)
                     /locus_tag="ACJFEZ_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HGG0917821.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     ILHGEDKPGAKLSVGIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFVPGVLAIAIAVALGFVIAPMLM"
     gene            complement(1356..2762)
                     /gene="aspA"
                     /locus_tag="ACJFEZ_001737"
     CDS             complement(1356..2762)
                     /gene="aspA"
                     /locus_tag="ACJFEZ_001737"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HGG0917822.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFNISHERLKDFPR
                     FVRALARVKKAAAMANYELGLLDKDIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIALELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMMGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPNYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
BASE COUNT          942 a          582 c          414 g          919 t
ORIGIN      
        1 attacattaa cataggagcg attacaaagc ctaaagctac agcaattgca atagctaaaa
       61 ctcctggtac aaagaaagag tgattaaata taaatttacc aattctagtc gttcctgtat
      121 catccatttg cacagcacca agtaaggttg gataagttgg aagcacaaaa agtgccgaaa
      181 ctgctgcaaa acaagctaca agcatataag aatcatgcgg atttgctgct gaaattccta
      241 aagcggtgat aattacaggt acaatggcct ttgcggttgc tgcttgagaa tataaaagca
      301 tgcttgcaaa gaaaaatgca actgctaaca tagcaggggt ttgtttaacc cagtcgcctg
      361 ctacttcttt aatagaagct tcgtgtcctg caacaaaagt atttccaagc catgctacac
      421 caaaaacgca aacacaagca gtcataccac ttttaaatac actggtatca agaattttac
      481 ctggttcaac tttacaaagc caagtgatca aagttgctgc agtaagtaaa aagctcataa
      541 tagctgcatc tcttggaacc acaacaggat caatccattt aatattgctt gaaattgcgg
      601 ttgcataaag tacaactgcc aaaacagtga tcaaaaaaat tcctactgaa agtttagcac
      661 ccggtttatc ttcaccatgt aaaatagctc ctgcatcttt aacaagtcct gcttttaagc
      721 gttcttgata aacgctatct ttgcttaaat ccataggagt gattaaactc actataaaag
      781 ctgtaagcat acaagctata aaagttgtac tgatccaaat tccaattaaa gttggataat
      841 tccatccaag tggctctaaa actccgctca tataaaccac agctgcactt acaggagaag
      901 cagtgattcc aatttgcgaa gaaacaacca ttaatgaaag tggaacacta ggttttatgt
      961 tttgagattt tgcaacatca actacaacag gcattaaaga aaatactgca tttcctgttc
     1021 ctgctaagat tgtaagcaac catccacaag ctggagctaa ataatttata aatttagggc
     1081 ttgatcttaa aattttttct gtcaccctta ccatataatc aagtccacct gcttgttgca
     1141 tagcagaaat tgctgcaata gctgcagcaa taattaaaat aacatcccaa ggaatattac
     1201 caggtttcat acctaaaaca agtcctagta taactacacc taatcctcca gcataaccta
     1261 tagcaatgcc gcctaggcga ataccgataa aaatcgcccc aagaaggacg attacttgca
     1321 aaattatcat tatatccata ttaaatccta aaatgctatt ttttagcttc catgtgaggg
     1381 tttagcatat ttgatggagt taaaatttca tcaatttgtt ctttacttaa aagccctctt
     1441 tcaagcgcaa tatcagccac tctttttcca gtgttcattg cctctttagc tatagaagct
     1501 gaattttcat aaccaatata aggatttaaa gctgttacta tacctactga attatagaca
     1561 aagtctgaac aaattttttc atttgcggta ataccatcta tacatttatc agctaaagta
     1621 tacattgctt tttctagcat tacaacagaa ttaaataagc tatatgctac aactggttca
     1681 aaaacattaa gttgcaattg tccaccctca caagcaaaag ttacagttac gtctgctcca
     1741 ataacaaaat aacaaacttg attaactact tcaggaataa caggatttac cttacctggc
     1801 atgatagaac tacctggttg catttttgga agattaatct cattaagacc acattttgga
     1861 ccactactta aaagtcttaa gtcattacat actttagaaa gttttgttgc aacacgtttt
     1921 aaaacacctg aaatttgtac ataagctccc gtatcttgag ttgcttcgat aagatcttct
     1981 gccacagtgt attcaaagcc ggttacttct cttatttttc tttctactac ttttggataa
     2041 ttaggatgag aattaatacc tgttcctata gctgttccgc ctaaattgat ttctaaaatc
     2101 agttttctag cttctaaaac tctttgtata tcttcaccca tcattactgc aaaagtttta
     2161 aactcacgac ccaaagtcat aggtactgca tcttgaagtt gggttctacc catttttaat
     2221 acatctttaa attcttctgc ttttctctca taagcttttt taagatgttc catagctttt
     2281 gctaaatcac ttagataatc atgcaaagca agatgcaaag cagtaggata agcatcattt
     2341 gtactttgac ttaaattcac atgatcattt ggatgaagat attggtattc acctttttta
     2401 tgacccataa gctcaagtgc tatattggct atcacttcat tggcattcat atttgtactt
     2461 gttccagctc caccttgtat catatcaact acaaattgat cgtaatatcc gccctctaaa
     2521 attttatcgc aagctttaat aatagcatct tggatatctt tatctaaaag acctaattca
     2581 taatttgcca tagcagctgc ttttttaacc cttgctaaag ctcttacaaa gcgtgggaaa
     2641 tcctttagcc tctcgtgtga aatattgaaa ttttccaccg ctctaaaggt ttgcactcca
     2701 taataaacct catcagaaat ttctaattcc ccgataaaat cgtgctcttt tcttgttccc
     2761 atttgaaacc tttcttaatt taatttttca tacaagcttt attacttgta ctcatatcag
     2821 tataatcata ttgtaatttt agttaataat tggttaa
//
LOCUS       DBBXRO010000159         2850 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.160, whole genome shotgun sequence.
ACCESSION   DBBXRO010000159 DBBXRO010000000
VERSION     DBBXRO010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2850
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.160"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..827
                     /locus_tag="ACJFEZ_001738"
     CDS             <1..827
                     /locus_tag="ACJFEZ_001738"
                     /inference="COORDINATES: protein motif:HMM:NF017783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-2,3-sialyltransferase"
                     /protein_id="HGG0917823.1"
                     /translation="EIDYSLLPKEYDIFRCNHFYAEDKYYTGKKIKAAFFVIPYFFNE
                     YYTMQKMLQNGDYECENIVCKMYNFQDRKEKIFRENFKYFFPAAINGYDAFFYKLKEL
                     SNMIDFDFCYEYNTTEMLTGTYVICCAVACGYKEIYLAGMDFGDEKYNYFSEKIEKIK
                     ESKKRTTKMHHKSIDLKILDFLQQQYNVKIFSICPNSSINAFIPLHPIQNNENIFKPI
                     ERPKDAIKTQLTPPIKAVRRYKRLYLESNIIIKFFHELVQVPRRIRHYYSKTRYTR"
     gene            complement(834..968)
                     /locus_tag="ACJFEZ_001739"
     CDS             complement(834..968)
                     /locus_tag="ACJFEZ_001739"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917824.1"
                     /translation="MIKNQDIDLLTWNESKDLFYNITIKAFFDPQVKIILSGEKGQYR
                     "
     gene            complement(1154..1426)
                     /locus_tag="ACJFEZ_001740"
     CDS             complement(1154..1426)
                     /locus_tag="ACJFEZ_001740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917825.1"
                     /translation="MDVHYLAEKNYFDIGHDRREESIFLNLKDLLKLAVIRDEEIRPL
                     QTKLWIDFKNLNEYNMQKSLQTLLGICKETGFNIKNLIVESPNLSF"
     gene            complement(1523..2395)
                     /locus_tag="ACJFEZ_001741"
     CDS             complement(1523..2395)
                     /locus_tag="ACJFEZ_001741"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HGG0917826.1"
                     /translation="MLIQIQQFLKFLHFQIMKIAPSLGLNKNIVNIMSEGGYYTYWIS
                     NQESVSTLGNAPESMARLSNKAIFLDNFFTGQTLARDEQILEELKKLSHKEKEFHILH
                     LQGTHMEYAKRYSKVFEKFSIKDLKENCLDNLNGSAKLNDRQAKIKSHYLNAIYYNDF
                     VVSEICNYFKDEEAIVFYLSDRGDEVYDFRDFFGYTETIGSRYMAEIPFMIFTSDKLK
                     QNHPDIINKIKKAQNLLFMSDDFLHAFLDLLGLDVEDLENNRSLFSDNYNKDRIRLFA
                     NKNYDEELKLCGSD"
     gene            complement(2304..2492)
                     /locus_tag="ACJFEZ_001742"
     CDS             complement(2304..2492)
                     /locus_tag="ACJFEZ_001742"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HGG0917827.1"
                     /translation="MSLYNYKLKTTPKLEALRNSENLFVFTDVIAPHAHTNPAISKIF
                     TFSNYENSSIAWFKQKYC"
     gene            complement(2502..>2850)
                     /locus_tag="ACJFEZ_001743"
     CDS             complement(2502..>2850)
                     /locus_tag="ACJFEZ_001743"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917828.1"
                     /translation="NMYIKWFFIFSIVLFLIPYNGLLFLPNEYHILDISKIIIFLVCL
                     ISVVKKPHKYFIDDFLLYSWFEAIKTIRGNANEYLMQLNDLERELKKQNKTYKVINSK
                     NIPKIVVIMGEST"
BASE COUNT         1050 a          413 c          327 g         1060 t
ORIGIN      
        1 aagaaattga ttattctcta cttccgaaag aatatgatat attccgttgc aatcattttt
       61 acgcagaaga taaatattat acaggaaaaa aaataaaagc tgcatttttt gttattcctt
      121 atttttttaa tgagtattat actatgcaaa aaatgctcca aaatggtgat tatgaatgtg
      181 aaaatatagt ctgtaaaatg tataattttc aagatagaaa agagaaaatt tttcgtgaaa
      241 atttcaaata ttttttccca gcagctataa atggatatga tgctttcttt tataagctaa
      301 aagaattaag taacatgata gattttgact tttgctatga atataacaca acagaaatgc
      361 ttactggcac ttatgttata tgttgcgctg ttgcatgtgg ctataaagaa atttatttag
      421 ctggcatgga ttttggagat gaaaaatata actattttag cgaaaaaatt gaaaaaataa
      481 aagaaagcaa aaaacgaact accaaaatgc atcataaaag tattgattta aaaattttgg
      541 attttctaca acagcagtat aatgtaaaaa ttttttcaat ttgtccaaat agctctataa
      601 atgcatttat acctctacat ccaatacaaa acaatgaaaa tatttttaaa cccatagaac
      661 gtccaaaaga tgctattaaa acccagctta ctccaccaat taaagctgta agaagatata
      721 aacgacttta tttggaatcc aatataatta ttaagttttt tcacgaactt gtgcaagttc
      781 caagacgcat aagacattat tactcaaaaa caagatatac aagataggga taactatcta
      841 tattgtccct tttctccact taatataatc ttaacttgag gatcaaaaaa ggcttttatg
      901 gtgatattat aaaataaatc tttactttca ttccaagtaa gtaaatcaat gtcttgattt
      961 ttaatcataa atttagattc ttttaaaaaa tgatataaat attccctata aggaaaactt
     1021 atagcgttaa aattatcagt atcgattgct ttttgaattt gtttttttat ttgatcagaa
     1081 ttttgtaaaa gatttgcact tgttatttca aataaataat aacttgtata aaaaccatgg
     1141 cttttaaata tgcctaaaaa cttaaatttg gactttcaac aatcaaattt ttaatattaa
     1201 agccagtttc tttacatatg cctaaaagcg tttggagtga tttttgcata ttatattcat
     1261 taagattttt aaaatctatc cacaatttag tttgcaaagg tcttatttct tcatctctaa
     1321 tcacagctaa ttttagtaaa tcttttaaat ttaaaaatat tgattcctcc ctcctatcat
     1381 gtcctatatc aaagtaattt ttttctgcta aataatgcac atccacttca aaactttgat
     1441 acttttcttt aaaatcatta aattttttta aatcatttgt cctatgaagc caaattttac
     1501 taggagattt aaaaggatat tgtcaatcac tgccacacaa ctttagctct tcgtcataat
     1561 ttttatttgc aaacaatcta attctatctt tattataatt atcgctaaac aagctgcgat
     1621 tgttttctaa atcttccaca tctaaaccta aaagatctaa aaatgcatgc aaaaaatcat
     1681 cgctcataaa aagtaaattt tgtgcttttt tgattttatt gattatatct ggatggtttt
     1741 gttttaattt atcacttgta aaaatcataa aaggaatttc agccatatat cttgaaccaa
     1801 ttgtttcagt ataaccaaaa aaatctctaa aatcataaac ttcatcacca cgatcgctaa
     1861 gataaaaaac aatagcttcc tcatctttaa aataattaca aatttcgctt acaacaaaat
     1921 cattataata gatagcattt aaatagtgtg attttatctt tgcttgccta tcatttagct
     1981 ttgcacttcc atttaaatta tctaaacaat tttcttttaa atctttaatg ctaaattttt
     2041 caaatacttt agagtaacgc ttggcgtatt ccatatgtgt tccctgtaaa tgcaagatat
     2101 gaaattcttt ttctttgtga gaaagttttt ttaattcctc tagtatctgc tcgtctcttg
     2161 caagagtttg tcctgtaaag aaattgtcta aaaatatagc tttattagat aaccttgcca
     2221 ttgattctgg cgcattacca agcgtagata cagattcttg attactaatc caataggtat
     2281 aatatccacc ctcgctcata atattaacaa tatttttgtt taaaccaagc gatggagcta
     2341 ttttcataat ttgaaaatgt aaaaatttta gaaattgctg gatttgtatg agcatgaggt
     2401 gctataacat cggtgaaaac aaaaagattt tcactatttc ttaaagcctc taattttggt
     2461 gttgttttta atttataatt atagagactc atataattcc tttaagttga ttctcccatt
     2521 ataacaacaa tttttggaat atttttagaa ttgataactt tgtaagtttt attttgtttt
     2581 tttaattctc gttctaaatc attaagttgc attaaatact catttgcatt tcctcttatt
     2641 gtttttatag cctcaaacca actataaagt aaaaaatcat ctataaaata cttatgtggc
     2701 ttttttacaa ctgaaatcaa acatacaaga aaaatgataa ttttagaaat atctaaaata
     2761 tgatactcat taggtaaaaa taacaaacca ttataaggga ttaaaaataa aactatacta
     2821 aaaataaaaa accacttaat atacatatta
//
LOCUS       DBBXRO010000160         2843 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.161, whole genome shotgun sequence.
ACCESSION   DBBXRO010000160 DBBXRO010000000
VERSION     DBBXRO010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.161"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            32..2062
                     /locus_tag="ACJFEZ_001744"
     CDS             32..2062
                     /locus_tag="ACJFEZ_001744"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HGG0917829.1"
                     /translation="MPLSRLNEEQYLAATANFGHNLIIASAGTGKTSTIVARISYLLS
                     QGVSPQKIMLLTFTNKASKEMISRLGKYFDKNITGKILAGTFHSTAYTLLKSANKDVV
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDIYSLFQNKAYDQDFYHWFCVNY
                     EDQSIYAEIYEDILKEYSEEKKRFNYVDFNDLLLNLKTLLNEKKYEFDEILVDEYQDT
                     NALQSSLIEAFESKSLFCVGDYDQSIYAFNGADINIIGGFKQRFKDAQIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRKDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGIEVALREQGIASVRKGSGSFFESLEVKAFSAMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGSLIRGFLEPDKSVNLQNHQKRNYQLG
                     LFADLEELASENRFKFESEFNAHPILKLSKINDLCAKNLEKIYFFLKKAMETKHSLAL
                     VNLICENSFYKEICEELAIKRATNKAGQVDLLRKKENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSNGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMSMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTAFTPSRFLIEAGLCKGELTID"
     gene            2118..2843
                     /locus_tag="ACJFEZ_001745"
                     /pseudo
     CDS             2118..2843
                     /locus_tag="ACJFEZ_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814911.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
BASE COUNT         1025 a          358 c          554 g          906 t
ORIGIN      
        1 tttctataat tcgtgctttt taaggaaaaa aatgccactt tctagattaa atgaagagca
       61 gtatttagct gctactgcaa attttggaca caatctgatc atagcaagcg cggggacggg
      121 aaaaacttct accatagttg caagaatttc ttatctttta agccaaggtg tatcgccgca
      181 aaaaatcatg cttttgactt ttactaataa agccagtaaa gaaatgataa gccgtttggg
      241 gaaatatttt gacaaaaata ttacaggaaa aattttagca ggaacttttc atagcacagc
      301 ctataccttg cttaaaagcg caaataaaga tgtggtttta aaacaggcca gtgagttaaa
      361 aaccctactt aaaagtgttt atgaaaaaag aacctttaga catttaagtg atataaaacc
      421 ttatcagtca agctatttat atgatatata ttctttattt caaaacaagg cttatgatca
      481 agatttttac cattggtttt gcgtaaatta tgaagatcaa agtatttatg cagaaattta
      541 tgaagatata ttaaaagaat acagtgaaga aaaaaagcgt tttaattatg tagattttaa
      601 cgatttactt ttgaatttaa aaactctttt aaatgaaaaa aaatacgaat ttgatgaaat
      661 tttggtagat gaatatcaag atactaatgc gcttcagagt tctttaatcg aggcttttga
      721 gagtaagagc ttattttgtg tgggggatta tgatcaaagt atttatgctt ttaatggtgc
      781 agatattaac ataataggtg gatttaagca gcgttttaag gatgctcaaa ttttttctct
      841 aaacaaaaac taccgttctt caagaagtat tctagctttg gcaaataagg taattttaaa
      901 caacgaaaga ctctatccaa aggagcttat agttacaaga aaagatgaat ttaaagcccc
      961 ttctttactg acttttgaag aattgtttga tcaatatcaa aatatagcca aaatgatact
     1021 tactagcgga gtgagcttgg aagaaattgc tgttattttt cgcaataatt cgagtgcaga
     1081 tggtatcgag gtggccttaa gagagcaggg gatcgcaagt gtgagaaaag gcagcgggag
     1141 tttttttgaa agcttggagg ttaaagcctt tagtgctatg cttgctcttg tggtaaatcc
     1201 taaggatatc atggcattta ttcatttggt tcagtatacc aaaggagtag gcggagtttt
     1261 agcaaaggaa atttttgatg ctcttttaaa attaggtcat ggtagcttga taaggggttt
     1321 tttagaacct gataaaagtg taaatttgca aaaccatcaa aaaagaaatt accagcttgg
     1381 gctttttgca gacttagaag aactagccag tgaaaatcgt tttaaatttg agagtgagtt
     1441 caatgctcat cctatcttaa aactttcaaa gattaatgat ttatgtgcta aaaatttaga
     1501 aaaaatttat tttttcttaa aaaaagctat ggaaacaaaa cattctttag cactggttaa
     1561 tttaatttgt gaaaattctt tttataagga aatttgcgaa gaattagcca tcaaaagagc
     1621 gacaaataaa gcagggcaag tggatctttt aagaaaaaaa gaaaatttag aaaagataga
     1681 aacgaaattt aatgttttaa aagaactcac taaaaattat agcgatattt ataagtatta
     1741 taatttttta accctaggtg caagcgagat gagtaatggc aagggtgtaa atttgcttag
     1801 cgtgcatgca agcaagggtt tggaatttga tttggtattt gtgatcgatc ttgcacaagg
     1861 gcgttttcct aatcaaaaac ttatgagcat gggcggaagc ttggaagaag aaagaaggct
     1921 gttttatgtt gcggtaacaa gggctaaaaa tatactttat cttagctatg caaaatacga
     1981 caaaaataaa aaaactgctt ttacaccttc gcgttttctt atagaagcag ggctttgcaa
     2041 gggagagtta accatagatt gataacattt tctttcaaaa taaatatcat tgaaagaaag
     2101 gtttaaaata tgaaaaaata tttatttttt taagtttagt cgcagcaagt tttttaaatg
     2161 ctgaagtttt aatttatggt cctggcggtc ctgcgccggt tatgaaagaa ctagcattga
     2221 aatttgaaga aaaaactaaa gaaaaagttg tagtgactgc aggtcctacc ccatcgtggt
     2281 ttaaaaaggc tagaaaagat gcggatttga ttttttcggg taatacttct atgatggatg
     2341 gatttatcaa aagaattcct agcttgaatt tagaagattt ggttgtttta aatgcccgtc
     2401 cttcaggtat catcgtgcgt cctaataacc caaaaatatc aaaagttttg aggatatttt
     2461 aaaagataat gtaaatgtta tggttgttga tggtgcaggt caagttggac tttatgagga
     2521 tatggcttta aaagatggta aaagagaaaa tttggtcaag ttgcgtaaaa atattaaagt
     2581 ttatgctaaa aattctaaaa tagctataga tgagtggaac aacaatccaa acatagacgc
     2641 tttaattatt tggtcgcatt gggctaaggt tttaggagat aaggctttgt ttatcgaaga
     2701 tgaaaaagca gcagtttatt gcacagctga aatcattcct accaaaaaaa ggacttcaaa
     2761 ataaacaagc tttagaattt gtgaaattta ttcaaagtaa agaagcccaa aaaatttgga
     2821 aaaaacatgc ttggaatgaa gtt
//
LOCUS       DBBXRO010000161         2836 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.162, whole genome shotgun sequence.
ACCESSION   DBBXRO010000161 DBBXRO010000000
VERSION     DBBXRO010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.162"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            3..2825
                     /gene="uvrA"
                     /locus_tag="ACJFEZ_001746"
     CDS             3..2825
                     /gene="uvrA"
                     /locus_tag="ACJFEZ_001746"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HGG0917830.1"
                     /translation="MNDTIKIIGAKENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVGEILKFPKGAKIIIYAPLVREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEDIELSKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLEESFGEIEIEVLNPDEVGLNKHYHFSEHSACFACKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDESLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKLPFAELSEEQKRLVLYGNAKTIDFFWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCAGHRLKPESLAVKVASKGLGEILDMSIEDSTSFFANKKNFSYLSEQERL
                     ISEPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFAGTYKELLKSKSETALYMNGKKQISQLQNREQKEWLELKNVNINNIKDLSVSFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKVGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCHGKRYNDATLEIKYKGKNISEILNMSVLEASEFFAAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKIISTGSVE
                     KVAKDHKKTKSYTGYYLDLELKNAKS"
BASE COUNT         1038 a          446 c          567 g          785 t
ORIGIN      
        1 ttatgaatga tacgataaaa atcattggcg caaaggaaaa taatcttaaa aatattcatc
       61 ttgaaattcc aaaaaataaa ctcattgttt ttacaggatt aagcggtagt ggaaaatcaa
      121 cccttgcttt tggcacactc tatgccgaag gtcaacgccg ttatatagaa agtttgagtg
      181 cttatgcaag acaattttta gacaaggtag gcaaacccga tgtggataaa atcgaaggtt
      241 taacccctgc tattgcgatt gatcaaaaaa ccacttctaa aaatccgcgt tctacagtcg
      301 gaaccatcac tgaaatttat gattatttaa gacttttata tgcaagagtg ggcattcagc
      361 attgccatca atgcggacaa aaaatctcat ctatgagtgc aagtgatata gtaggagaaa
      421 ttttaaaatt tccaaaagga gctaaaatca tcatctacgc tcctttggtg cgtgaaaaaa
      481 aaggaactta tgcggattta cttgaaaatt tgcgcaataa aggctatgta agagcgcaaa
      541 ttgatggggt tttagtaaga cttgatgaag atatagaact ttcaaaaact aaaaaacata
      601 cgataaaact cgtcattgat agactcgaaa tacaagaaga tctactttct cgccttgcaa
      661 gcgatataga aaaaggtttg gaagaaagct ttggagaaat cgagatagaa gtcttaaatc
      721 ccgatgaagt aggacttaat aagcactatc actttagcga acactccgct tgctttgctt
      781 gtaaaatttc ctttgttcct cttgagcctt taagtttttc ttttaactct ccaaaagggg
      841 cttgtgaagc ctgtgatgga cttggaattc gctataccct agatatgaaa aaaatcatcg
      901 atgaaagcct aagtcttgaa aatggcgcgg taaaaataat gtatggattt aacaaaagct
      961 attattataa atttttaatt gctttttgcg agcaaaatga aattcctatt aaactccctt
     1021 ttgctgaact tagcgaagaa caaaaacgcc ttgtgctata cggaaatgca aaaaccattg
     1081 actttttttg gaaaagaaat cgcctcaaac gcacctttga aggtgtggta aaaatggctt
     1141 atgaaatgct aaaagatgaa aaagacttag cagaatacat gagtgaaaaa atttgcaaag
     1201 attgtgcagg tcatcgttta aaacctgaaa gtttagccgt aaaagtagcc tctaaaggac
     1261 taggcgaaat tttagatatg agtatagaag atagcactag cttttttgca aataagaaaa
     1321 atttctctta tttaagcgag caagaaagac ttatctctga acccatatta aaagaaatca
     1381 acgaaagact tttcttttta tatgatgtag gactaggcta tttatcttta ggacgcgatg
     1441 caaggacgat tagcggaggt gaggcacaaa gaattcgcat cgcttcacaa attggcagtg
     1501 gtttaagtgg ggtgatgtat gttttagatg aacctagtat cggacttcat gaaagagata
     1561 cagcaaaact cattaaaacc ttaagaaatt tacaacaaaa aggcaatact ctaattgtcg
     1621 tagagcacga taaaatgact atagaagaag ctgattttat cgtagatatt ggcccaaaag
     1681 caggaaaatt tggaggcgaa gtggtatttg ctggaactta taaagaactt ttaaaaagca
     1741 aaagtgaaac cgcactttat atgaacggca agaagcaaat ttcacagctt caaaacagag
     1801 aacaaaaaga atggctagaa cttaaaaatg taaatatcaa taatatcaaa gatctaagcg
     1861 tttcttttcc tttgcaaaat ttagtcgcga tcacaggtgt ttcaggatct ggaaaaagct
     1921 ctctcatact tcaaacctta ctgccttttg cacaagaaga attaaaccgc gccaaaaaag
     1981 taaagaaatt aggtggggtg cagattgaag ggcttgaaaa actagataag gttatttatc
     2041 ttgatcaaag tcctatagga cgaaccccgc gatcaaatcc tgctacttat acaggtgcca
     2101 tggatgaaat tcgcaatctt tttgctgcta ccaaagaagc taaaatgcga ggctataaag
     2161 tggggcgttt ttcttttaat gttaagggtg gaagatgtga gaaatgcagt ggcgatggag
     2221 agattaaaat agaaatgcac ttcttgcccg atgtaatggt ggtttgcgat acttgccatg
     2281 gcaaacgcta taatgatgcc acactagaga ttaaatacaa aggtaaaaat atcagtgaaa
     2341 ttttaaatat gagcgtttta gaagcaagtg aattttttgc agctgtgcca aaaatcaaac
     2401 aaaaacttga taccttagta aaagtcggac ttgattatct taccctagga caaaatgcaa
     2461 cgactttaag tgggggtgaa gcgcaaagga taaaacttgc aaaagaatta agccgcagtg
     2521 acacaggaaa aacgctttac atacttgatg agccgaccac agggctacat tttgaagatg
     2581 tcaataaact cattttagtt ttacaacact tagtcgatct taaaaattct gtttttgtga
     2641 tagagcataa tttagatgtg attaaaaatg ctgattatat catcgatatg ggtccagaag
     2701 gcggagtaaa gggtggaaaa atcattagta caggaagcgt ggaaaaagtt gcaaaagatc
     2761 ataagaaaac aaaatcttat acaggatatt atttggattt agagcttaaa aacgcaaaga
     2821 gctaaaatga cacagg
//
LOCUS       DBBXRO010000162         2736 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.163, whole genome shotgun sequence.
ACCESSION   DBBXRO010000162 DBBXRO010000000
VERSION     DBBXRO010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.163"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..727
                     /locus_tag="ACJFEZ_001747"
     CDS             <1..727
                     /locus_tag="ACJFEZ_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HGG0917831.1"
                     /translation="FKELNLLNKKLLKTKEKILKNTQKNKKQSDKISLKNTQLASVIS
                     AISHELKNPLSVIDLSLEMLKDENLKDEKLKNELLEKISRQSLKLNALTHKLNFVFNL
                     NHEALQMQEFDLFTLCEKIVKNPGFERVILRGKSTRVKADEFLIEQVIINLLSNALKY
                     SQKEVILIAQDQKISVLDFGKGIEKNQLKFITKKFYKIDTKSNNSFGLGLFLVKKILS
                     IHKSYLEISSTVSQGSKFSFKLH"
     gene            736..2667
                     /gene="abc-f"
                     /locus_tag="ACJFEZ_001748"
     CDS             736..2667
                     /gene="abc-f"
                     /locus_tag="ACJFEZ_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protection-like ABC-F family protein"
                     /protein_id="HGG0917832.1"
                     /translation="MALIDLIDASKKFGEKIVLNEANFSANEGEKIAIIGKNGEGKSS
                     LLKAFLGTLALDSGRVVRQNGKSIAMLSQTVDFNANLSVKEAIKIELEEIYNTLKEYE
                     ASQSKLEKEPTNKEYLKQMDDLIALIDSKDAWNIEAKITRVLKEFSLLDYSDRLVCTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEDLLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVDQGKLSVFKGGYTNYLEKKTQILESLAKSHETLLKHLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFTGEKIPNRKKMLFEL
                     KNVSKNLGEKALFADFSSRILQGERIAIVGKNGCGKSTFLKMLLGELKQDSGEIKRGE
                     IKIGYFDQARSLVNSDKTLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     SILSGGEKNRVALALLFTEEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFENGAKINILHTLYTEYLENEKEMQEFDDYVSSLDLQEQTRMQKE
                     KSSKKLSYKENEILKNHPEKIEMLEKQISKLNSDLSNPSVYQEIGINTLYEELEQAQK
                     ELEKLESEYFEVLEKSENL"
BASE COUNT         1073 a          340 c          484 g          839 t
ORIGIN      
        1 ttttaaagag ctaaatttac taaacaaaaa acttttaaaa acaaaggaaa aaatcttaaa
       61 aaatactcaa aaaaacaaaa aacaaagtga taagatttct cttaaaaata ctcaattagc
      121 aagtgttatt tctgctatct ctcatgagct taaaaatcct ttaagtgtga ttgatcttag
      181 cttagaaatg cttaaggatg agaatttaaa agatgaaaaa ctcaaaaacg aattactaga
      241 aaaaatttca cgccaaagcc taaagttgaa tgctttaaca cataagctta attttgtttt
      301 taatctcaac cacgaagcct tgcaaatgca agaatttgat ctttttactt tgtgtgaaaa
      361 aattgttaaa aacccaggtt ttgaaagagt gattttacgc ggaaaaagca ctagagtaaa
      421 agcggatgag tttttaatcg agcaagtgat tattaactta ctttctaatg ctctaaaata
      481 cagccaaaaa gaggttattt tgattgcgca agatcaaaag attagtgttt tggattttgg
      541 caagggtata gaaaagaatc aattaaaatt tattacgaaa aaattttata aaattgacac
      601 taagagcaat aattcttttg gacttgggct ttttttggta aaaaaaattt taagcataca
      661 taaaagctat ttagaaattt ctagcactgt atcgcagggt tctaaattca gttttaaact
      721 tcattaagga aaaaaatggc acttattgat ttaattgacg cttcaaaaaa atttggggaa
      781 aaaattgttt taaatgaggc aaattttagc gctaatgaag gcgaaaaaat agccatcata
      841 ggaaaaaatg gagaaggaaa atcaagtctt ttaaaagcat ttttaggcac tctagctcta
      901 gatagcggca gagtggtaag gcaaaatgga aaaagtatag ccatgctttc gcaaaccgtt
      961 gattttaacg caaatttaag cgttaaagaa gccataaaaa tcgaacttga agaaatttat
     1021 aatactttaa aagaatatga agcatcgcaa agcaaactcg aaaaagagcc tacaaacaaa
     1081 gagtatttaa aacagatgga tgatttaatt gctttaatcg atagcaaaga tgcttggaat
     1141 atcgaagcta aaatcacgcg tgttttaaaa gaattcagcc tattagatta ctctgatcgt
     1201 ttggtttgca ctttaagcgg tggtgaaatt cgcagagtag gtctttgtat acttttactt
     1261 aaaaatcctg atattttatt gcttgatgag cctacaaacc accttgatgt ttatatgaca
     1321 agctttttgg aggatttgtt aaaaaattca aaaatgtgtg tgatttttat ctcgcatgat
     1381 agatatttca tcgatgcaat tgcgcataaa tgtgtagaag ttgatcaagg taaacttagt
     1441 gtgtttaagg gtggttatac gaattaccta gagaaaaaaa ctcaaatttt agaaagttta
     1501 gctaaaagcc atgaaacact tttaaagcat ttaaaaagcg aggaagaatg gcttagaaga
     1561 ggtgttaaag caagacttaa aagaaatgaa gggcgcaagg agcgtatttt taaaatgcgt
     1621 gaagaagcta aaaaaaatcc tggtgccatc aagcgtttaa agcttgaaat ttcaagggca
     1681 gctttaaatt ttacaggaga aaaaattcct aatcgtaaaa aaatgctttt tgagcttaaa
     1741 aatgtaagta aaaatttagg agaaaaagct ctttttgcag atttttcaag tcgtatttta
     1801 caaggtgaac gcattgctat agtaggcaaa aatggttgtg gaaagtctac ttttttaaaa
     1861 atgcttttag gagaattaaa gcaagatagt ggagagatca agcgtggaga gattaaaata
     1921 gggtattttg atcaagctag aagtcttgta aattcagata aaaccttgct tgaaattttt
     1981 tgccctaatg gaggcgacag ggttgaagta cgcggaaaaa atatgcatgt ttatgggtat
     2041 ttaaaaaatt tcttatttcc taaagaattt ttagataaaa gcgtttccat tttaagtggc
     2101 ggagaaaaaa atcgcgttgc tttggcttta ctttttacag aagaatatga tgttttaatc
     2161 ctagatgagc ctacaaatga tcttgatata gcgactatta atattttaga agagtacttg
     2221 cttagctttg aaggagccat tttgctagta tctcatgata gatattttgt agataaaatt
     2281 gctaccaaac tttatgcttt tgagaacggc gctaagatca atattttgca tacgctttat
     2341 actgaatatc ttgaaaatga aaaagaaatg caagaatttg atgattatgt ttcaagtctt
     2401 gatttgcaag agcaaactcg tatgcaaaaa gaaaaaagta gcaaaaaact aagctataaa
     2461 gaaaatgaaa ttttaaaaaa tcatcccgaa aaaatcgaaa tgcttgaaaa acaaatttct
     2521 aaactcaata gtgatctttc aaacccaagc gtatatcaag aaataggcat aaacactctt
     2581 tatgaagagc tagaacaagc acaaaaagaa ttagaaaaat tagaaagcga atattttgaa
     2641 gttttggaaa aaagtgaaaa tctataaatt tttatcaata aaatatgaaa tttattgaca
     2701 aaaattatta aaatttatta taatttgact tcaaat
//
LOCUS       DBBXRO010000163         2689 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.164, whole genome shotgun sequence.
ACCESSION   DBBXRO010000163 DBBXRO010000000
VERSION     DBBXRO010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.164"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            15..1439
                     /locus_tag="ACJFEZ_001749"
     CDS             15..1439
                     /locus_tag="ACJFEZ_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HGG0917833.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSAAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTLQGI
                     KNLSNKEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDADKLGFNPFDLT
                     KIWPHSVVPLMDIGEMILNQNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRARSEVNTYNVAGAMNFDSYRNGAAYYEPNSYEESPKEDK
                     SYLEPDLVLEGNAQRYAPLDDDFYTQPRALFNIMNQNQKEQLFENIAASMEGVEEKII
                     TRALGHFEKISPDYAQGIKKALGK"
     gene            1496..1963
                     /locus_tag="ACJFEZ_001750"
     CDS             1496..1963
                     /locus_tag="ACJFEZ_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HGG0917834.1"
                     /translation="MMTLSLEEEKRFAELCKMAFNFARNNEYENLKIMIEAGLNVNLK
                     THKGDTLLMLAAYNNSYECAKMLLEKGALVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYSFAIMFGRKDVAEFLLKSSKKSLSKRLSLGILKLFKK"
     gene            complement(1967..2635)
                     /locus_tag="ACJFEZ_001751"
     CDS             complement(1967..2635)
                     /locus_tag="ACJFEZ_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HGG0917835.1"
                     /translation="MDEKQKEQFIKLTNFLGQVLGKQYEVVFHVLSKEGAYIAAIANS
                     HVSGRTLESPLSAFASELVQNKAYLKEDFLCDYKALIGKSKLVRGSTFFIKNSDELVG
                     ILCINHDTSMMRDLVCRIIDIEKLGDMSEFLNQDKENNTSVDSLGNIETLSHSIEEIL
                     AQSIDMNYLNSDYQLSMAQKEEITKTLYQKGIFNIKGSVPIVARLLKISEPSVYRYLK
                     NFKS"
BASE COUNT          980 a          437 c          435 g          837 t
ORIGIN      
        1 tttaggagaa aataatgaaa aaattaacta acgacttcgg aaacattata gccgataatc
       61 aaaactcttt aagcgcaggt gcaaaaggcc ctttacttat gcaagattat cttttacttg
      121 aaaaacttgc tcatcaaaat agagaaagaa ttccagaaag aacagtgcat gcaaaaggaa
      181 gcgcagctta tggcgaaata aaaattacag cagatttaag tgcttatacc aaagctaaaa
      241 tttttcaaaa aggtgaagtt actccattgt ttttgcgttt ttcaacagta gctggcgaag
      301 caggtgcagc cgatgctgaa cgcgatgtta gaggttttgc tattaaattt tataccaaag
      361 aaggaaactg ggatttagta ggaaacaata ccccaacatt cttcatccgt gatgcttata
      421 aatttcctga ttttatccac actcaaaaaa gagatccaag aacgcattta agaagtaata
      481 atgccgcttg ggatttttgg agtttgtgtc ctgaaagctt acaccaagta actattctta
      541 tgagtgatag aggaattccg gcaagttatc gtcatatgca cggttttgga agccatactt
      601 atagctttat caatgacaaa aacgaaagat tttgggtgaa attccatttt aaaaccctac
      661 aaggtattaa aaatcttagc aataaagaag ctgctgagct tatcgccaaa gatagagaaa
      721 gccaccaaag agatctttac aatgctatag aaaataaaga tttcccaaaa tggaaagttc
      781 aagttcaaat tcttgctgaa aaagatgctg acaaactagg ctttaatcct tttgatttaa
      841 ctaaaatttg gccacatagc gtagtgcctt taatggatat aggcgaaatg atcttaaatc
      901 aaaatccaca aaattatttt aatgaagtag aacaagcagc ttttagccca agcaatatag
      961 tacctggtat aggttttagt cctgataaaa tgctacaagc tagaattttc tcatatcctg
     1021 atgcacaaag atatagaata ggaactaatt atcatctttt acctgtaaat cgtgctagaa
     1081 gtgaagtaaa tacttacaat gttgcaggtg ctatgaattt tgatagctat agaaatggtg
     1141 ctgcgtatta tgagccaaac agctatgaag aaagcccaaa agaagacaaa agctatcttg
     1201 aacctgattt agttttagaa ggtaatgcgc aaagatatgc tcctttagat gatgattttt
     1261 acactcaacc aagagcgtta tttaacatca tgaatcaaaa ccaaaaagaa caactttttg
     1321 aaaatatagc agcttctatg gaaggtgtag aagaaaaaat cattactaga gctttaggac
     1381 attttgaaaa aatttcacct gattatgcac aaggtattaa aaaagctttg ggaaaataat
     1441 ttttacttgc cactttttag gtggcaaact aaagattata aacaaaggaa aaacgatgat
     1501 gacacttagc ttagaagaag aaaaaagatt tgccgagctt tgcaaaatgg cttttaattt
     1561 tgctagaaat aacgaatacg aaaatcttaa aatcatgata gaagcaggac tgaatgtgaa
     1621 tttaaaaaca cataaaggcg ataccttgct tatgcttgca gcttataata attcttacga
     1681 atgcgcaaaa atgcttttag aaaagggtgc gcttgttgat gaaaaaaatg atcgaggaca
     1741 aacaccttta gcaggagttt gctttaaggg ctatttacct atgtgcgagc ttttagtaaa
     1801 atatggagca aatatagatg aaaataatgg cttaggtatg acaccttata gttttgctat
     1861 catgtttggc cgtaaagatg tagccgagtt tttactcaaa agctctaaaa aaagcttaag
     1921 taaacgcctt tctttaggaa ttttaaaatt atttaaaaaa taatttctat gatttaaaat
     1981 tttttaaata cctatagaca ctaggctctg aaatttttaa gagtctagcc actataggca
     2041 cagaaccctt gatattaaaa ataccctttt gatataaagt ttttgtaatc tcttcttttt
     2101 gtgccatgct aagttgataa tccgaattta aataattcat atcaatgctt tgagctaaaa
     2161 tttcttctat agaatgactt agggtttcta tatttcctaa actatctaca ctggtattat
     2221 tttctttgtc ttgatttaaa aattcactca tatcgcctaa tttttctata tctataatcc
     2281 tacaaaccaa gtctctcatc atgctcgtat cgtgattgat acacaaaatt cctaccaatt
     2341 catcagaatt ttttataaaa aatgtcgaac ctctaacaag ttttgatttt ccaatcaaag
     2401 ccttataatc acacaaaaaa tcttctttta aataagcctt attttgcaca agttcacttg
     2461 caaaagcact caagggagat tcaagagttc taccgctgac atgactattt gcaatagctg
     2521 ctatataagc accctcttta gaaagaacat gaaaaaccac ttcatactgc ttacctaaaa
     2581 cttgtcctaa aaaattcgtg agctttataa attgctcttt ttgtttttca tccatgaaaa
     2641 tattcctaaa ataataaaat ttagaatcca aagcttaaat tttaacttt
//
LOCUS       DBBXRO010000164         2669 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.165, whole genome shotgun sequence.
ACCESSION   DBBXRO010000164 DBBXRO010000000
VERSION     DBBXRO010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.165"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            39..710
                     /locus_tag="ACJFEZ_001752"
     CDS             39..710
                     /locus_tag="ACJFEZ_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HGG0917836.1"
                     /translation="MEKLAVINGVGVELEVQGADQVTCTSLSVAEVFNKNHKNIIRKI
                     NEFPKDNFTKLNFEPSKYIDSTGRILPCYKITRDGFSLLVMGFTGEKAYKWKIEFIKA
                     FNEMEKRLRNIEYEKHDKLAFRQSLGYKSQLAQQKQKYENEIKALKYDLEQSKNNFKD
                     KLNCILAKNGLYAFDFKTFKNYALKLEKMLKDLKNDENKENKLLLRMQNDFLECLELY
                     KSVNI"
     gene            788..1822
                     /locus_tag="ACJFEZ_001753"
     CDS             788..1822
                     /locus_tag="ACJFEZ_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5309 family protein"
                     /protein_id="HGG0917837.1"
                     /translation="MALPSMGHTAPATENVKLKQSIYETIIKIGATETPILNKIGTSK
                     VTNPLTHSWLTDTFEEPKKNANLELSKFVGETKNTAQKTTNATQIFITEAMVSKALLK
                     ANQYGGNEMEYQIGKKTKEHKMDMEYALFGLGRDSDVKKSVFKDYVQAQEATSGEMAG
                     FFHYIAKGKDSFADGKRGNVLAFDEAGDWSGTATELTEDKLNQILQTIWNSGVTPKDV
                     FLGADLKGAINKFATRILGNETKLAGQVVSLETDFGTVNFHMHRLLSPKYGLGDVLIA
                     GDFEYMKHGLYIPTMIEDVPTDITAKAKRFYTQSTLEVRNADAFAIGVGLTSGNNAKA
                     KAVLKAAKGA"
     gene            1822..2226
                     /locus_tag="ACJFEZ_001754"
     CDS             1822..2226
                     /locus_tag="ACJFEZ_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002796938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917838.1"
                     /translation="MLCATAKKLIIAKVKNSYKMIEDDEVLKAYFMEAFYYILSKCVP
                     SVLLKNVEQGEKVFRQVRNNHFLIIPDEPDFDNEKEHLMIDEALSFAVINYVCYLITR
                     CEEKDFLALCDKIINEYIANDGKELDNERTWL"
     gene            2207..2401
                     /locus_tag="ACJFEZ_001755"
     CDS             2207..2401
                     /locus_tag="ACJFEZ_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917839.1"
                     /translation="MREHGCECNFTNKFNRALTYKDYAQSINSADFIAYLDDKKWLLA
                     MDDLLFFCEKRIKDSDYYEG"
     gene            2404..>2669
                     /locus_tag="ACJFEZ_001756"
     CDS             2404..>2669
                     /locus_tag="ACJFEZ_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917840.1"
                     /translation="MGTSLNELKTGREKLEIINQVLARISNVATALDNTRIEEIVGLK
                     EQVNNFYNQILELKNLVVKNSELTQSNTDFTKNKRNEIEKISNE"
BASE COUNT         1080 a          315 c          483 g          791 t
ORIGIN      
        1 taataagtaa aaactaatca aaacaaaaag gacaaaaaat ggaaaaatta gctgtaatta
       61 atggtgtagg tgtagagttg gaagtgcaag gagccgacca agttacttgc acttctttaa
      121 gtgtggctga agtattcaat aaaaaccaca aaaatattat acgcaaaata aatgaatttc
      181 caaaggataa ttttactaag ctcaattttg agccgagtaa atatattgat agcacgggta
      241 gaattttacc ttgctacaaa atcactcgtg atggtttttc tttgcttgtt atgggtttta
      301 caggcgaaaa ggcttataaa tggaaaatcg agtttatcaa agcttttaat gaaatggaaa
      361 aaagattaag aaatattgaa tatgagaagc acgataagtt agcttttaga caaagcttag
      421 gttacaaatc tcaattagca cagcaaaagc aaaaatatga gaatgaaatt aaagctttaa
      481 agtatgattt agaacaaagt aaaaacaatt ttaaagataa attaaattgt atattggcta
      541 aaaatggttt atatgccttt gattttaaaa cttttaaaaa ttatgcctta aaactagaaa
      601 aaatgttaaa agatttaaaa aatgatgaaa acaaagagaa taaactactt ttaagaatgc
      661 aaaatgattt cttagaatgt ttagaacttt ataaaagtgt aaatatctaa tttgtttcaa
      721 aacacactat atttgaaata gctatttttg gaaaaatcct taaaactaaa ctaaggagaa
      781 ttcaaaaatg gctttacctt caatgggaca tacagcaccc gcaacagaaa atgttaagtt
      841 aaaacaatca atatacgaaa cgattattaa aattggagct actgaaacac caattttaaa
      901 taaaataggc acttcaaagg ttacaaatcc tttaacccat agttggctta cagacacttt
      961 tgaagaacca aaaaagaacg caaatttgga attgagcaaa tttgtagggg aaacaaaaaa
     1021 cacagctcaa aaaactacaa atgctactca aatattcatt accgaagcca tggtatcaaa
     1081 agctttgtta aaagcaaatc aatatggtgg caatgaaatg gagtaccaaa taggcaaaaa
     1141 aaccaaagaa cataaaatgg atatggaata tgctttattt ggtctaggta gagatagtga
     1201 tgtaaaaaaa tcagttttca aagattatgt tcaagcacaa gaagcaacaa gtggagaaat
     1261 ggctggattt tttcattata tcgctaaagg aaaagatagc tttgctgatg gaaagcgtgg
     1321 aaatgtatta gcttttgatg aagcaggaga ttggagcgga actgcaacag aactaacaga
     1381 agataaactt aatcaaattt tgcaaaccat ttggaatagc ggagttacgc ctaaagatgt
     1441 ctttttagga gctgacttaa aaggagctat caataaattt gctacaagaa ttttaggcaa
     1501 tgaaacaaaa ctagcaggac aagtagtaag ccttgaaaca gattttggaa cggtaaattt
     1561 ccatatgcat agattattaa gccctaaata tggtttgggt gatgttttaa ttgctggaga
     1621 ttttgagtat atgaaacatg ggctttatat tcctactatg attgaagatg ttccaactga
     1681 tattactgca aaagcaaaaa gattttatac gcaaagcact ttagaagtaa gaaatgctga
     1741 tgcttttgct ataggcgtgg gattaactag tggaaataat gcaaaggcta aagcggtttt
     1801 aaaagcagca aaaggtgcat aatgctttgt gctacggcta aaaaactcat tatcgctaaa
     1861 gttaaaaatt cttacaaaat gatagaagat gatgaagttt tgaaagccta ttttatggaa
     1921 gcattttatt atattttatc aaaatgtgtt cctagtgttc ttttaaaaaa tgtagaacaa
     1981 ggcgaaaaag ttttcaggca agttagaaat aatcattttt tgattattcc tgatgagcct
     2041 gattttgaca atgaaaaaga acatttaatg atagatgaag cacttagttt tgctgtgatt
     2101 aattatgttt gttatttgat tacaagatgc gaagaaaaag actttctggc attatgtgac
     2161 aagataatta atgagtatat agctaacgat ggcaaggagc ttgataatga gagaacatgg
     2221 ttgtgagtgc aattttacaa ataaatttaa tcgagctttg acctataaag actatgctca
     2281 aagtataaat agtgctgatt ttatagctta tttagatgat aaaaaatggc ttttagccat
     2341 ggatgatctg cttttctttt gtgaaaagag aattaaagat agtgattatt atgaaggtta
     2401 aaaatgggaa caagcttaaa tgagttaaaa acaggtagag aaaaacttga gattataaat
     2461 caagttttgg caagaatttc aaatgttgct actgctttgg ataataccag aatagaagaa
     2521 attgtaggac taaaagaaca agttaataat ttttataatc aaattttaga gcttaaaaat
     2581 ttagttgtaa aaaatagcga gcttactcaa agcaatactg attttactaa aaacaaaaga
     2641 aatgaaattg aaaaaataag caatgaaat
//
LOCUS       DBBXRO010000165         2639 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.166, whole genome shotgun sequence.
ACCESSION   DBBXRO010000165 DBBXRO010000000
VERSION     DBBXRO010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.166"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            149..532
                     /locus_tag="ACJFEZ_001757"
     CDS             149..532
                     /locus_tag="ACJFEZ_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA transfer protein"
                     /protein_id="HGG0917841.1"
                     /translation="MKKTKQVNIRLTLEEYNLLTEKAQSHGLTLSRYLRDLSMNYPIT
                     CIVDQKVAHDVLNIAGDIGRLGGLFKHWLVRNEDNKVNFSNKRTYNDIDEIVDQILDL
                     QILLKEQAKRIIQNDNQKDSKQKAE"
     gene            495..>2639
                     /gene="traI"
                     /locus_tag="ACJFEZ_001758"
     CDS             495..>2639
                     /gene="traI"
                     /locus_tag="ACJFEZ_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI/MobA(P) family conjugative relaxase"
                     /protein_id="HGG0917842.1"
                     /translation="MIIKKIPSKKQNKSSFKNLSNYILDKDNNNAKVLVDYMLDKNNE
                     MDKVEGYHFTNCSFDNDEDNINEIINTQKLNTTTKQDKTLHLVVSFQEDENPTLEILQ
                     AIEEEIAKSLGMEDHQRLSVVHSNTNNLHIHIAINKVNPHTLKVINPYNDVRILQETA
                     MKLEKKYNLKLDNHISQKDKQSNKYNIHTMNCNFETWVKEKLSKQVDLMLKDEKTTFK
                     DIKQFLAEYDLEFRERRKGFVIASKSEKLFCKASSIHRGLSKQALEKRFKELDLKQEK
                     ENTQNIKEEKHEIKEQYQRPNKETSKTLWEKYLRIENEKKAELDKELRMLKLRRNEFK
                     TSIPSMKFNKNTFAHVKNQRMIFKNKQKELYQKYKRVSYRDFLISESLSGNEEATRAL
                     RRTKTKINENENTLSSTQEKPKIFENVDYITKEGYAVYKSGFNKAIDKGEMLKVSLIN
                     DKDDKEFLLNSLLMAIDRFGNHLNITGDDKFKRNILEVANDYNLNVSFSDQRMQKIQE
                     ENNNKRQEMKTRKVLKNIIELKIKLTEQDKDIDENIKEKELKALKFSLKKISNSTPSI
                     FKGELKKLGFSYKEIDSMDTESVCIEIDGFIVNSANKEGLIAMNEEIKQTLIDDEEIK
                     RFEKFEHLFLNTNKITDIAKGFYTNRKIDADEYIKRFSMQESKINKVANAISMLSDKN
                     IDIMEKYAKKLEKDLKYQYLKKVEVIENNDINL"
BASE COUNT         1191 a          285 c          406 g          757 t
ORIGIN      
        1 caaattatag tgtattttaa taaaatgatt gaaatgtttg aaaaatagct tatattttgt
       61 tataattgct tggagtaata agacaggata tgtatttgct atacaaatac aaagttttat
      121 cgctaaagct ctaaaatagg acgccaaaat gaaaaaaaca aaacaggtaa atattagact
      181 gactttagaa gaatataacc ttttaacaga aaaagcacaa agtcacggct taacactttc
      241 aagatatttg cgtgatttat cgatgaatta tcctattact tgcatagtag atcaaaaagt
      301 cgcacacgat gttttaaata ttgcggggga tataggaaga ttgggcggac tttttaaaca
      361 ttggttggtt agaaacgaag ataataaagt caatttttca aacaaaagaa cttataatga
      421 tattgatgag attgtagatc aaattttaga tttacaaata cttttaaaag aacaagccaa
      481 aaggataata caaaatgata atcaaaaaga ttccaagcaa aaagcagaat aaatcaagtt
      541 ttaaaaattt atcaaactat attttagaca aagacaataa taatgcaaaa gtattggttg
      601 attatatgct tgataaaaac aatgaaatgg ataaagtgga aggttatcat tttacaaatt
      661 gttcttttga taacgatgaa gataatatta atgagattat caatactcaa aagcttaata
      721 ccacaacaaa acaagataaa accttgcatt tagtagtttc ttttcaagaa gatgaaaacc
      781 ctactttaga aattttacaa gcaattgaag aagaaatcgc aaagtcttta ggaatggaag
      841 atcatcaaag attaagcgtg gttcattcca acacaaataa tcttcacata catattgcaa
      901 ttaataaagt taatccgcat acactaaaag ttattaatcc ttacaatgat gttagaattt
      961 tacaagaaac agcgatgaaa cttgaaaaga aatataattt gaagttagac aatcatattt
     1021 cacaaaaaga taagcaaagt aataaatata atatccacac tatgaattgt aattttgaaa
     1081 cctgggtaaa agaaaagctt tctaaacaag tagatcttat gttaaaagat gaaaaaacta
     1141 cttttaaaga tattaaacaa tttttagctg aatatgatct tgaatttaga gaaagaagaa
     1201 aaggttttgt tattgcttct aaaagtgaaa aattattttg taaggcaagt agtattcaca
     1261 gggggttgtc taaacaagct ttagagaaaa gatttaaaga attagattta aaacaagaaa
     1321 aagaaaatac gcaaaatatt aaagaagaaa aacacgaaat aaaagaacaa tatcagcgac
     1381 caaataaaga aacttctaaa acattatggg aaaagtattt aagaattgaa aatgagaaaa
     1441 aagcagagct tgacaaagaa cttagaatgt taaagcttag gcgaaatgaa tttaaaactt
     1501 caataccatc aatgaaattt aataaaaata cctttgcaca tgttaaaaac caaagaatga
     1561 tttttaaaaa taaacaaaaa gagctttatc aaaaatataa aagagtgtct tatagagatt
     1621 ttttaattag tgaatcctta tcaggaaacg aagaggctac aagggctttg cgaagaacta
     1681 aaacgaaaat caatgaaaat gaaaatactc tatcatcaac ccaggaaaaa cctaaaatat
     1741 ttgaaaatgt agattatata acaaaagaag gttatgctgt atataaaagt ggttttaata
     1801 aagccataga caaaggagaa atgctaaaag tatctcttat caatgataaa gatgataaag
     1861 aatttctttt aaattctttg cttatggcaa ttgatagatt cggaaatcat cttaatatta
     1921 caggagatga taaatttaaa agaaatattt tagaagtcgc aaatgattat aatttaaatg
     1981 taagtttttc agatcagaga atgcaaaaga tacaagaaga aaacaataac aagcgtcaag
     2041 aaatgaaaac tagaaaggtt ttaaaaaata ttattgaatt aaaaatcaaa ctcacagaac
     2101 aggataaaga tatagatgaa aatattaaag aaaaagaatt gaaagcttta aaattttcac
     2161 ttaaaaaaat atcaaactct acaccttcaa tatttaaagg cgagctgaaa aaattaggct
     2221 ttagctataa agaaatagat tccatggata ctgaaagtgt ttgtattgaa attgacggct
     2281 ttattgtaaa ttctgccaat aaagaaggac ttatcgcaat gaatgaagaa attaaacaaa
     2341 ccttgatcga tgatgaagag ataaaaaggt ttgaaaaatt tgaacattta tttttaaata
     2401 ctaataaaat aacagatatt gccaagggat tttatacaaa tagaaaaatt gatgctgatg
     2461 agtatataaa aagattttca atgcaagaaa gcaaaattaa taaggtggca aacgctattt
     2521 ctatgttaag cgataagaat attgacataa tggaaaagta tgcaaaaaaa cttgaaaaag
     2581 atttaaaata tcaatacttg aaaaaggtgg aagtaattga aaataatgat attaatttg
//
LOCUS       DBBXRO010000166         2553 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.167, whole genome shotgun sequence.
ACCESSION   DBBXRO010000166 DBBXRO010000000
VERSION     DBBXRO010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.167"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..843
                     /locus_tag="ACJFEZ_001759"
     CDS             <1..843
                     /locus_tag="ACJFEZ_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HGG0917843.1"
                     /translation="FLLFIFLGLFNSFLCAKTLQPSENLNLPLISVSIAPQAFFVKKI
                     AGDTLNINILSTNTHKPKSKSNPMKKLEKSELYFTIGLEFEKKLTDKLEQKFPKVKII
                     DMQKDIPLAKTSSSNSKEILDPFTWLDPILVQNIALNTYNALVQKYPQNKSLYKHNLD
                     KFLTELDVLNLQISSKLQKVKNKEFITYHPAWSYFAKRYDLVQNHIEFLGKKLKNKDI
                     KNLGALIKEKNIKVIFVQTRFPEKTAKTLEKEYNVKIYKIDYLSYDWENELLKTANAF
                     YENL"
     gene            856..1710
                     /locus_tag="ACJFEZ_001760"
     CDS             856..1710
                     /locus_tag="ACJFEZ_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HGG0917844.1"
                     /translation="MLFFEISNINYAYNNETILKNINLSYDSKDFLSIIGPNGAGKST
                     LVKLILGLLKTKKTISFHGIKKNEIGYVPQHTLANPNFCPRVIEIVLMGLVNKKIFGF
                     YSKKDKNKALEALASVGMQDFWDRKINELSGGQKQRVFIARALVDECKMLILDEPTAS
                     VDSKSAIQIFELLSSLHEKGIGILLICHDINLVLAYSDKIAYLNKELFLHTNTKEKDK
                     SVFLKHLYENHSHFCDVEMSLNSCFCDEENCEKKKICEQEFARRNLKKSNFKKENFCL
                     KFSKESHV"
     gene            1703..2509
                     /locus_tag="ACJFEZ_001761"
     CDS             1703..2509
                     /locus_tag="ACJFEZ_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HGG0917845.1"
                     /translation="MFEILNFTFFQNALLAAVLVSIACGVVGTLVMINRLFSIAGGIT
                     HGAFGGIGIAFYFSLPILISTGIFTLFLAFLVAFLSKHYEHRSDSIVAVIWAFGMAFG
                     IILIDLSPGYSTDLMAYLFGNILAVGMQDLWLMAIVDGVVIVLMLLFYRQFEALSFDV
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGIILIMALLSIPSFIAENFTKKLGLI
                     MILASVLSMIFCILGLIISYYFNLSSGACIIAVACFGFLIHLLAKFLLKR"
BASE COUNT          899 a          368 c          418 g          868 t
ORIGIN      
        1 ttccttcttt ttatattttt aggacttttt aattcctttc tttgcgctaa aaccttacaa
       61 ccaagtgaaa atctaaattt acctttaatc agcgtaagca tagccccaca agcttttttt
      121 gttaaaaaaa tagcaggtga tactctaaat ataaacatct tatccacaaa tacacacaag
      181 ccaaaatcca aatcaaaccc tatgaaaaag cttgaaaaaa gtgagcttta ctttaccata
      241 ggcttagaat ttgaaaagaa attaacagat aaactagaac aaaaatttcc aaaagttaaa
      301 atcatagaca tgcaaaaaga tattcctcta gctaaaacta gttctagcaa ctccaaagaa
      361 attttagatc cttttacttg gcttgatccc attttagttc aaaacatagc cttaaatacc
      421 tacaatgctc tagttcaaaa atatcctcaa aacaaaagct tatacaagca taatttagat
      481 aaatttttaa cagagttaga tgtcttaaat ttacagatct cttcaaaatt acaaaaagta
      541 aaaaataaag aatttataac atatcatccc gcttggtcat attttgccaa gcgttatgat
      601 cttgtgcaaa atcatataga atttttagga aaaaaactaa aaaataaaga tataaaaaat
      661 ttgggtgcgt tgattaaaga aaaaaatatt aaagttattt ttgtacagac tcgttttcct
      721 gaaaaaacag caaaaacttt agaaaaagaa tacaatgtaa aaatttacaa gatagattat
      781 ttatcttatg attgggaaaa tgaactttta aaaacagcaa atgcttttta tgaaaattta
      841 tagttaggtt ttttaatgct tttttttgaa atatcaaata ttaattacgc ttacaataac
      901 gaaacaatct taaaaaatat caacttaagc tatgatagta aagattttct ttctatcatc
      961 ggccctaatg gtgcgggaaa atctacgctt gtaaaactca tcctagggct tttaaagact
     1021 aaaaaaacta tcagttttca tgggattaaa aaaaatgaaa tcggctatgt ccctcaacac
     1081 actttagcaa accctaactt ttgcccaagg gttatagaaa tcgttttaat gggacttgtc
     1141 aataaaaaaa tttttggttt ttatagtaaa aaagataaaa acaaagcctt agaagctcta
     1201 gcaagtgtag gtatgcagga tttttgggat agaaaaatca atgaattaag cggaggtcaa
     1261 aaacaacgcg tttttattgc tagagcttta gtcgatgaat gtaaaatgct gatcttagat
     1321 gagcctacag caagcgttga tagcaaatcc gcgattcaaa tttttgaact cctaagttct
     1381 ttgcatgaaa agggcatagg aattttactc atttgccacg atatcaatct cgtgcttgct
     1441 tatagtgata aaatcgcgta tttaaacaaa gaactctttt tgcataccaa taccaaagaa
     1501 aaagacaaaa gcgtattttt aaaacacctt tatgaaaatc attcgcattt ttgcgatgta
     1561 gaaatgagtt taaattcttg cttttgcgat gaagaaaatt gtgagaagaa aaaaatttgt
     1621 gaacaagaat ttgcaagaag aaatttaaaa aaatcaaatt ttaaaaaaga aaatttttgt
     1681 ttgaaatttt caaaggaaag ccatgtttga aattttaaat ttcacctttt ttcaaaatgc
     1741 tttattggct gcggttttag tcagcattgc ttgtggagtc gtaggtacgc ttgtgatgat
     1801 aaatcgactc ttttccatag caggaggcat cacgcatggg gcttttgggg gtattggtat
     1861 agcgttttat ttttctttgc ctatattgat cagcacaggt attttcacgc tctttttagc
     1921 ctttttggta gcatttttat cgaagcatta tgagcacaga agcgatagca tagtcgctgt
     1981 gatttgggct tttgggatgg cttttgggat catacttata gatttaagtc caggttatag
     2041 cacggatttg atggcttatc tttttggaaa tattttagca gtaggaatgc aagatctatg
     2101 gctgatggcg atagtagatg gggtggtgat tgttttaatg cttttatttt atagacaatt
     2161 tgaagcttta agctttgatg tcgaatttgc aaaagtgcga gggataaata caagcttttt
     2221 tcattatctt ttaatcgcac ttatggcatt ttgcatagtg atttctatac gccttgtggg
     2281 gattattttg atcatggctt tacttagcat acctagcttt atagctgaaa attttacaaa
     2341 aaaactaggt ttaataatga ttttagcaag tgtattgagt atgatttttt gcattttagg
     2401 gcttataata agctattatt ttaatctctc aagcggtgct tgtatcatag ctgtagcttg
     2461 ctttggcttt ttgatacact tgctagcaaa gtttttacta aaaaggtaaa ggtgcaaaaa
     2521 tcacttgcac ttttatattt aatgaaaaaa tat
//
LOCUS       DBBXRO010000167         2494 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.168, whole genome shotgun sequence.
ACCESSION   DBBXRO010000167 DBBXRO010000000
VERSION     DBBXRO010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.168"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            138..836
                     /locus_tag="ACJFEZ_001762"
     CDS             138..836
                     /locus_tag="ACJFEZ_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HGG0917846.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQPIMQQQTPQASSYQSVSLTSNSEFLKEIKSAIDEALIY
                     PRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYE
                     KTFHIKIPLVYKLS"
     gene            complement(928..1890)
                     /locus_tag="ACJFEZ_001763"
     CDS             complement(928..1890)
                     /locus_tag="ACJFEZ_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided endonuclease InsQ/TnpB family
                     protein"
                     /protein_id="HGG0917847.1"
                     /translation="MRDKNKGFPKFKNSKFAKQSFNWNNQAYKIKDSDTTKFKIFRLM
                     NTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNISLISSKDFDIKKAVD
                     IDLNINEITLSSGELIATNSKLLSRAEYDLAFKRLQRKQSRRILKTKKEKTKLSHNFK
                     KTQLKLNKIYEKSSNIKKDSYHKITSKLIQEFDLLAVEDLQIKNMSKRAKLKNIKAKS
                     GLNKSILNISFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVY
                     LCEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(2191..2283)
                     /locus_tag="ACJFEZ_001764"
     CDS             complement(2191..2283)
                     /locus_tag="ACJFEZ_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917848.1"
                     /translation="MLETLKKYAENQGIEDNCPKKIYNQKEKKP"
BASE COUNT          865 a          386 c          301 g          942 t
ORIGIN      
        1 acaagcttga ttatttgatt gttatttttc tctgtgaaat ttgtttcaaa atttatcttt
       61 ttaaacaatt taccatagaa tgtgtttaag aaataaagat atttaaatca aaaaataaaa
      121 tcataacgga gtaaaagatg aaaacattta taagcaatca taaaaaccaa tcttctttta
      181 tcactttatt tgtttttaca cctttatttt ttgtttttct ttattctaaa gattttttac
      241 acatacaacc caatgaaact attaaagaaa ataaatttaa tatggcaatc aaacattttg
      301 tacaaaattc ctccgatatg aaaccgacac aacccacaca aactatacaa gagccttcga
      361 atgtgcaacc caaagaacct gtgcaagaaa taaaaaaaat aaaaccgaga aaagaaaaac
      421 ctatcgctaa acctaaaaaa ataatccctc cagcaaatgc aaaggcaata agtcaaccca
      481 aaaaagatac aaacatgcag caaccaatca tgcagcaaca aactccacaa gccagctctt
      541 accaaagcgt atctttaact agcaatagtg aatttttaaa agaaataaaa tcagcaatcg
      601 atgaagccct aatctaccct agacaagcta gaaaaatgcg tatgagtggg gaggttcttg
      661 tagaatttac ctggacaaaa gaaaagaaat tagaaaattt aaaaatactt aaaccttcaa
      721 aatatgattt tctaaataaa agtgctttag aaactatacg catagcttct aaaaaatttc
      781 cacaatatga aaaaactttt catataaaaa taccattggt atataaatta agctaaatct
      841 ttcacaatat actctatttt taatgcaaat cactccagct ttgctaacgc ttagaagtag
      901 aagcttccta gctaaagcta actagtatta gctaattcga aaggctttga gtttatagtc
      961 ctcaaggcta attcctaacc caaacgactt taatccacgc tttaagatat tatttgcagc
     1021 attaatatct ctatgtaaag tgttgccaca tttttcacaa agatacactc tatctttaaa
     1081 cataagattt tttttgatat ttccacatac actacaagtt ttgcttgtat attgtggatt
     1141 gacttttata aagaatttac cattatgctt tgctttatac tctagatatt gagagaattg
     1201 atagaatgaa atattaagaa tagatttatt taaaccactt ttagctttta tattctttaa
     1261 tttagctctt ttagacatat tcttaatttg caaatcttcg actgctagca agtcaaattc
     1321 ttgtatgagt tttgaagtta tcttgtgata actatccttt ttgatatttg aacttttttc
     1381 atagatttta tttaatttta attgtgtttt tttgaaatta tggcttaact ttgttttctc
     1441 cttttttgtt tttaatattc tcctactttg ttttctttgc aatcttttaa atgctaaatc
     1501 atattcagct ctactaagta gctttgagtt agtagctatt aactctccac tgcttaaggt
     1561 aatctcattg atatttaaat caatgtcaac tgctttttta atatcaaaat ctttgctaga
     1621 tattaaagaa atatttgatt catcataaat gatactaaaa gctaaatagt atttattgtg
     1681 atttttgata atagtgattt gattaaactt ataagtattt ggtaaatctc tgtgataacg
     1741 cattttaaaa aatgtattca taagtctaaa tatcttaaac ttagtagtat cactatcttt
     1801 gattttgtag gcttgattat tccaattaaa gctttgcttt gcaaatttag agtttttaaa
     1861 tttgggaaag cctttgtttt tatctctaat tgcttgctct aaggcacgag aagattaatc
     1921 cttgcttgtt gggttacaac acttttatag cttaattctc ttgcttttat aaggctagtt
     1981 ttattgatta tctatcttac ttgcctttaa ataactccta tcttttttat ctaaattctt
     2041 atttttatcc cactgctctt gctgtaaatt taaacaaata ttataggctt gatatagatg
     2101 aaacattgat gattaataag cttttgttgt tctttgttta ggtagaattc tatatttaaa
     2161 acctttggtt atttgcattg ctttgttcca ttagggcttt ttttcttttt ggttatatat
     2221 ttttttaggg caattatctt ctatgccttg attttctgca tattttttaa gagtttctag
     2281 cattattccg cataggtatt ctataaaaaa ttactgatta tgtcaaataa cctaactaga
     2341 gccgtacaac taacactgta agcaattcat ctcccactta agaagtgaga gttttattga
     2401 ataaaaaaga taaatttaaa gcaaataatc tttttttaga caacactaaa cccttgcatg
     2461 tatttacagc aatatttatt tcatcataaa caac
//
LOCUS       DBBXRO010000168         2433 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.169, whole genome shotgun sequence.
ACCESSION   DBBXRO010000168 DBBXRO010000000
VERSION     DBBXRO010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.169"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(9..476)
                     /locus_tag="ACJFEZ_001765"
     CDS             complement(9..476)
                     /locus_tag="ACJFEZ_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HGG0917849.1"
                     /translation="MFNIVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAV
                     RRAGLDYWEKLEPVIWESLDIFLEHNLIYKDRFFFATTKSNKFYFQAKFQENDFLFFG
                     SESYGLPMELMQLNWDNAITIPMKACGRSLNLATSVGIVSYEALRQNFDRFSL"
     gene            complement(479..1468)
                     /locus_tag="ACJFEZ_001766"
     CDS             complement(479..1468)
                     /locus_tag="ACJFEZ_001766"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HGG0917850.1"
                     /translation="MSLIKINQKAYESNLKIIAEKIGSFSRLICVFKDNAYGHGAKIL
                     APIASTLGVNFVAVKNEKEAYELEDFFDNILILSHHPHGKENSKFIYALNDIDKINAY
                     QNDTRIHLKIDTGMHRNGVCVEDLNEALLKIKCSALKLEGIFTHFAGADEMDASFFIQ
                     REKFSKAKDIAKQIYKNLIFHSHNSPALFRAVKIPEDELCRTGLAQFGYGDESLKKVL
                     SLYAHRLSHRELQIGQSVGYGGAFSATEKIKIATYDLGYADGLFRYDGKGDLLLANKQ
                     KILGKISMDSFSCQDFGKEICVFDNADVWADFFNTINYEILVKLHPDIPRVLV"
     gene            complement(1468..2433)
                     /locus_tag="ACJFEZ_001767"
     CDS             complement(1468..2433)
                     /locus_tag="ACJFEZ_001767"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase family protein"
                     /protein_id="HGG0917851.1"
                     /translation="MLAFYFICISALGASDLVKIYLNQGLDAVGVAIEKELTNKDFWL
                     DEIGDRNISLGYYNDDVAIVLTNKTDKILRVYSYSDGKIKQDFEQKAIITGLMGDKQV
                     EGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYPLDGT
                     RLDEFKTRGCIALFNENLEEFAKVVQDKKVFAMTEEKEKVRAKKEDIAALLADLFAWK
                     LAWTDSDINTYLNFYDEKQFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINISPYP
                     NVENETMYRISFYEDYYTKNYQFKGDKILYVKIDSKGKMKILAEQ"
BASE COUNT          821 a          458 c          293 g          861 t
ORIGIN      
        1 aagtaagatt ataaactaaa acgatcaaaa ttttgacgca aggcttcata agaaacaatg
       61 ccgacacttg tggccaaatt taaacttcta ccacaagctt tcatagggat tgtaatggca
      121 ttatcccagt taagctgcat taattccatc ggtaaaccat agctctcgct accaaaaaat
      181 aaaaaatcat tttcttgaaa tttggcttga aaataaaatt tattactttt tgttgtcgca
      241 aagaaaaaac gatctttgta aatgagattg tgttcaagaa agatatctaa actttcccaa
      301 attacaggct caagcttttc ccaataatca agccctgctc tacgcactgc tttttgagaa
      361 atatcaaaaa ctatgggttt gacaatatgc aatttaaaac ccgcattaaa acacattcta
      421 cctatactgc cagtattttg aggaattcta ggatgaatta aaacaatatt aaacatattt
      481 acaccaatac tcttgggata tcaggatgga gttttactaa aatttcataa ttgatagtat
      541 tgaaaaaatc tgcccaaaca tctgcattat caaacacaca tatttccttt ccaaaatctt
      601 gacaagaaaa actatccatt gaaattttac ctaaaatttt ttgtttattg gctagcaata
      661 aatctccctt gccatcataa cgaaacaaac catctgcata acccaaatca taggtagcta
      721 ttttgatttt ttctgtcgca ctaaaagctc caccataacc tacactttga cctatttgta
      781 attctctatg acttaatcta tgagcatata aacttaaaac tttttttaga ctttcatcac
      841 cataaccaaa ttgcgctaag cctgttctac aaagctcatc ttcgggtatt tttacagctc
      901 taaataaagc cggggaatta tgcgagtgaa atatcaaatt tttataaatt tgtttagcaa
      961 tatctttagc tttagaaaat ttttcccttt gaataaaaaa acttgcatcc atttcatctg
     1021 cacctgcaaa atgtgtaaat ataccctcta gcttcaatgc agaacatttg attttcaaca
     1081 aagcttcatt taaatcctca acgcaaactc cattgcgatg cattcctgtg tctattttaa
     1141 gatgtattct tgtatcgttt tgataagcat tgattttatc tatatcattt agagcataaa
     1201 taaatttaga attttctttg ccatgtggat ggtgagaaag aattaaaata ttatcaaaaa
     1261 aatcttcgag ctcataagct tctttttcat ttttaactgc tacaaaatta acgcccaaag
     1321 tactagcaat cggagctaaa atttttgctc catgcccata agcattatct ttaaaaacgc
     1381 aaatcaatct tgaaaagcta cctatttttt cagctataat ttttaaattg ctttcataag
     1441 ctttttgatt gattttaatt aaagacatta ttgttctgct aagattttca tttttccctt
     1501 gctatcaatt ttaacatata agattttatc ccctttaaat tgatagtttt tagtataata
     1561 atcctcataa aatgaaattc tatacatagt ctcattttct acattcggat aagggctgat
     1621 atttatatcc gaaaatttaa tctttttgtc ttcttttcta gaaaaaatag actttttcat
     1681 agaagcaaat tgttcaaatt tcattttatc aaaacgctta aattgtttct catcgtagaa
     1741 atttaaataa gtatttatat cgctatctgt ccaagctagc ttccaagcaa aaagatctgc
     1801 aagtaaagca gctatatctt cttttttggc tcttactttt tctttttcct ctgtcatagc
     1861 aaatactttt ttatcttgta ctacttttgc aaattcttca agattttcat taaataaggc
     1921 tatgcaacca cgcgttttaa attcatccaa tcttgttcca tctaaaggat agccatgtat
     1981 ccaaatccct ccgcctgttt tgccttgaac tttatcaagt aaattaggat aagttgttgc
     2041 aaacgcaaaa ggaccataat aaggatcccc tggattaaat ttgcgtccaa gttcataaaa
     2101 gcctactgga gtttttaaat ccccctcaac ttgtttatcc cccataagtc ctgtaatgat
     2161 agctttttgt tcaaagtctt gtttaatctt cccatcacta taagaataaa cacggagaat
     2221 tttatctgtc ttatttgtaa gcacaatagc aacatcatca ttgtaatatc ctaaagagat
     2281 atttctatcg cctatttcat ctaaccaaaa atctttattt gttaattctt tttcaattgc
     2341 tacacctaca gcatctaaac cctgatttaa ataaattttt accaaatcag aagccccaag
     2401 agctgaaatg catataaagt aaaatgctaa aat
//
LOCUS       DBBXRO010000169         2425 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.170, whole genome shotgun sequence.
ACCESSION   DBBXRO010000169 DBBXRO010000000
VERSION     DBBXRO010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.170"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            2..2338
                     /locus_tag="ACJFEZ_001768"
     CDS             2..2338
                     /locus_tag="ACJFEZ_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HGG0917852.1"
                     /translation="MCTLFSFELTLNTGRENNQAFAVLHASNDLDFTCQKITIEDKIH
                     FECEIIGVVDNKLSNQSFTAFDLKFIKEPQKIKMIILPKMSARMFDLSQNIYIDKELD
                     SSSAHKSKSFTFIFTPELERAKDYDGLDFNINFPHESLPYVGALDLNSDPVIIPQSAD
                     INTYLRIKNEYDKANYTQVVIDAQNAINRYRGSIFMNEFILYKLRAQSQIYTQDPSMR
                     DQQVLEKMIDEAKNWNRTFTSDKNFPEVLHIMLRTYIALSQRADIEYTMSILNNEQPN
                     SYFTQLARLDYADYIYPLNEKERAIDIYEDIYFNTKNLDLAARAAMSLIKDYLANNQI
                     DKAVQYVNTILKANPEYFPKDMFRSLELAKLFNQHKQYDISASIYEDVFVKMPKIDDR
                     YEQVLKDLALTLAMTSRSSDANKYLDLYMDNYLDGKYLDEIRKANDEVFFALADNNAT
                     FLHQRYANLIKEYAQKDENIVNKALSEDVALYYKEGNLSAVLTYKDQIENKKLTNSAK
                     LLEQAAIQLLNNDLKADNCINAVNIFTQFNAYEIGQKIENKKQMLACLMRTSNMQQAM
                     DYIDKNHNEDSIFYGLQKASILYDNKQYPLALNIAREIANSRILKSDEENFKAYYLQF
                     LSYLKMDDYNMAIKILQILESFPMNFTMVEAYDNLLIYANDHNMQTTILTYAPKAIDY
                     QNLKGINLFSPNLEFIYLDTLAKTNQNQEALAVLIDLLKLKLSDEDRARALYIQSMTY
                     ERMQNTQAQKESLKQCLELKTTSNWQNLCRDKNQILAQ"
BASE COUNT          903 a          336 c          385 g          801 t
ORIGIN      
        1 tatttgcact cttttttctt ttgaattaac cctaaacaca ggccgcgaga acaatcaagc
       61 ttttgcggtc ttacatgcta gtaatgactt agattttact tgtcaaaaaa ttactatcga
      121 agataagata cattttgaat gcgagattat aggcgtagta gataataaat taagcaatca
      181 aagctttact gcttttgatt taaaatttat caaagagcct caaaagatta agatgattat
      241 cttgcctaaa atgagcgcaa gaatgtttga tttatcacaa aatatttata tagataaaga
      301 actagactct tctagtgcac ataaaagtaa aagttttact tttatattta ctcctgaact
      361 tgaacgcgca aaagactatg atgggcttga ttttaacatc aacttcccgc atgaaagctt
      421 gccttatgtc ggagctttgg atttaaattc agatcctgtc atcatccctc aaagtgctga
      481 tattaatacc tatttgcgta taaaaaatga gtacgataag gctaattata ctcaagtggt
      541 tatagatgct caaaatgcta tcaatcgcta tcgtggtagt atttttatga atgagtttat
      601 actttataag cttagagcac aaagccaaat ttacactcaa gatccaagta tgcgcgatca
      661 gcaagttttg gaaaaaatga ttgatgaggc taaaaattgg aatcgtactt ttacaagcga
      721 taagaatttt ccagaagtct tgcatattat gctaagaacc tatattgctt tatcgcaacg
      781 cgctgatata gaatatacta tgtcgatttt aaataatgag caacccaata gttattttac
      841 tcagctagca agacttgatt atgctgatta catctatcct ttaaacgaga aagaaagagc
      901 tatagatatt tatgaggata tttattttaa caccaaaaat ttagatttgg cagcaagggc
      961 ggcaatgagc ttaatcaaag attatcttgc caataatcaa atcgataaag ctgtgcaata
     1021 tgtcaataca attttaaaag ccaatcccga atattttcca aaggatatgt ttagatcttt
     1081 agagcttgct aagcttttta atcagcataa acaatatgac ataagtgcaa gtatttatga
     1141 agatgttttt gtaaaaatgc ctaaaattga tgatagatat gagcaggttt taaaggatct
     1201 agctttaacc ctagctatga cttcaagatc aagtgatgct aacaaatatc ttgatttata
     1261 tatggataat tatttagatg gaaaatattt agatgaaatt agaaaagcaa atgatgaggt
     1321 tttctttgcc ttagcggata ataatgctac atttttacat cagcgttatg caaacctgat
     1381 taaagagtac gctcaaaaag atgaaaatat agtcaataaa gctttaagcg aagatgttgc
     1441 gctttattat aaagagggta acttaagtgc agttttgacc tataaagatc agatagaaaa
     1501 taagaaatta acaaattctg caaaattatt agagcaagca gctattcagc ttctaaacaa
     1561 tgatttaaaa gccgataatt gtatcaatgc tgttaatata tttacacaat ttaatgctta
     1621 cgaaattgga caaaagatag aaaataaaaa acaaatgcta gcttgtctta tgagaacttc
     1681 aaatatgcaa caagcaatgg attatatcga taaaaatcat aatgaagatt ctatttttta
     1741 tggtttgcaa aaagcatcta tactttatga taataaacaa tatccattag ctttaaatat
     1801 agctcgagaa atagcaaatt ctagaatttt aaagagtgat gaggagaatt ttaaagctta
     1861 ttatttgcaa tttttgtctt atttgaaaat ggatgattat aatatggcta ttaaaatttt
     1921 acaaatttta gaaagctttc ctatgaattt tacaatggtt gaagcttatg ataatttatt
     1981 aatttacgca aacgatcaca atatgcaaac aacgatttta acttatgcgc ccaaggctat
     2041 cgactatcaa aatttaaaag gaattaatct ttttagcccc aatttagaat ttatttatct
     2101 tgatacttta gcgaaaacca atcaaaatca agaagcttta gcagtattaa tagatttgtt
     2161 aaaattaaag ctttcagatg aagatagggc tagagcttta tatatacaaa gtatgactta
     2221 tgaaagaatg caaaatactc aggcgcaaaa agaaagtcta aagcagtgtt tggagcttaa
     2281 aactacttct aattggcaaa atttatgtcg agataaaaat caaattttag cccaataagc
     2341 ttaatttgat tttctatgca ttgagatgat ttttgttttg tgattgctta gcttggattt
     2401 tttaaatcat cataataaaa actaa
//
LOCUS       DBBXRO010000170         2386 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.171, whole genome shotgun sequence.
ACCESSION   DBBXRO010000170 DBBXRO010000000
VERSION     DBBXRO010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.171"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..770)
                     /locus_tag="ACJFEZ_001769"
     CDS             complement(<1..770)
                     /locus_tag="ACJFEZ_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0917853.1"
                     /translation="MLINQSFEIDSCDDVELNIKRTSKLEYRISYDDEKEIKAIVFVI
                     GGYGANANIYFLDSYRNYIAKNFDVVAVHVFYHCFCQRRSDVEKYSTLADFTKDDLKL
                     IEKVLRKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGE
                     YQNFGIMAAIDHINALKDLVKRFPKLADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFKSKDTNGDMYMQGDHFFV"
     gene            831..2339
                     /locus_tag="ACJFEZ_001770"
     CDS             831..2339
                     /locus_tag="ACJFEZ_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HGG0917854.1"
                     /translation="MITHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNNKPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKILFC
                     GEIMPNKQLNIWRKHLPDALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQISVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
BASE COUNT          871 a          356 c          333 g          826 t
ORIGIN      
        1 ctcacaaaaa aatgatcgcc ctgcatatac atatccccat tagtatcttt gcttttaaat
       61 tccaactctc taccaataat ataattaagc ggtggaacag ccgaacccga attatcaatc
      121 acgccatcca cataccaagg agctattttt gctatgagca aggctaagta tcctccataa
      181 gacccccctc cataaatttt tggtaaatct gcaagttttg gaaagcgttt aactagatct
      241 tttaaagcat tgatatgatc aatagctgcc ataatgccaa aattttgata ttctccacgc
      301 gaaggaataa aagttgcact tagtctttct tcaaaatcat aaggcaatcg atttaacatt
      361 tttaattctg tcataatctc gctcaaatat tcacaatgac taactacagt attattggct
      421 aattgatcac atggaatatt gtatttacga agcacttttt ctattaattt taaatcatct
      481 tttgtaaaat ctgctaatgt tgaatacttt tcaacatccg aacgcctttg acaaaaacaa
      541 tgataaaaaa catgcactgc tacaacatca aaatttttag caatataatt tctataagaa
      601 tctaaaaaat atatatttgc attagctcca taacctccta tgacaaaaac tatagcttta
      661 atctcttttt catcatcata gctaatgcgg tattcaagtt tgctagttct ttttatattt
      721 aattctacat catcacaaga atcgatttca aagctttggt ttatgagcat ataaaggcct
      781 tttttattaa tttatcgata ttatattaca aaaaattaaa aaggtaaatc atgataactc
      841 atatctatga ttttttagaa aaaagtttaa tcaaatttag tgaaaaaact gcttttgtag
      901 aaccctttgc caaagaaaga aaggaaatca cttacaaaga ctttgatctt ttttctaaga
      961 aactagccag tgaaatttta aaaactttaa aaaataataa acctactcaa gctcctgttt
     1021 taatcatctt acctaagggg attgattgtt taatttcatt ttttggagtg gcactcagtg
     1081 gaaattttta taccctttta gatgagaaaa gtcctaaaga aagagtagaa aaagttatag
     1141 aagttttaaa acctaaactt tttatcactt caaaggattt aaattttaat ttagatttgc
     1201 ctacgcttta tacacaagac tttgaaagtt ttaatataga tgagagtttg ctaaaaaatg
     1261 ctaaagaaaa acacatagat actaatttac tctatgtttt ctttactagc ggaagcacag
     1321 gtattcctaa aggagtaagc atagcacata agagtgtgat tgattatact ttttgggtgt
     1381 gtgagacttt taaatttgat gagaatgaaa ttttagccaa tcaagcacca ttttattttg
     1441 acaatagcat tttagatatt ttttcaagtg taaaatcagg agcaacttta caccttttac
     1501 ctaatcatct ttttgccttt ccaaataaaa ttttagaatg tcttgaaaaa gaaaaagtaa
     1561 gcactatatt ttgggtacct tcggtgctga tttattttgc aaatactgaa gctttgaata
     1621 attttagttt aaacgcctta aaaaagatac ttttttgtgg tgaaatcatg cccaataaac
     1681 agctaaatat ttggcgtaaa cacttacccg atgctttatt tgccaacctt tatggcccta
     1741 cagaaatcac tgatgtatgt tctttttata tcatcaatcg tacttttaaa gatgaagaac
     1801 ttttacctat aggcaaagca tgtaaaaaca cagaactttt agtttttgat gaaaatatga
     1861 atttcataag tcctaaacaa ataagtgtta aaggggagct tttcgtgcgt ggaacttctt
     1921 tgtctttagg gtattataat gacaaagaaa aaaccaaaca agcttttatt caaaatcctt
     1981 tacatgataa ttatttagat ttactctata aaacaggaga tatcgtttct tataatgaat
     2041 ttggagagct tttatgctac ggaagagcag ataatcagat aaaatatatg ggacatagaa
     2101 tagaacttgg agaaatagaa agcgtgataa attctcatgt gaatattaaa aacagtgctt
     2161 gtatttttaa agaagatatt atttgttttt atgaaagtga agaagaaatt aattttaaag
     2221 attttttgaa agataaatta ccttcttaca tgatcccaaa aaattttatt aaactcgaca
     2281 aatttaagct taatcaaaat ggtaaaattg atagaaaggt tttaaaagaa cttgtttaaa
     2341 aaagcttttt ataaaggatt taagttaagt aattactatg acaatt
//
LOCUS       DBBXRO010000171         2334 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.172, whole genome shotgun sequence.
ACCESSION   DBBXRO010000171 DBBXRO010000000
VERSION     DBBXRO010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.172"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            18..1037
                     /gene="mutY"
                     /locus_tag="ACJFEZ_001771"
     CDS             18..1037
                     /gene="mutY"
                     /locus_tag="ACJFEZ_001771"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HGG0917855.1"
                     /translation="MQKQMIQNLQDKLLLWYDKNGRKNLPWRNLESKDCDERLKDIDR
                     AYGVYISEIMLQQTQVKSVLEKFYFPFLQKFPTLQSLAKANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFEGKLPKKLDELKNLSGIGTYTAGAIACFAYDQKVSFVDGNIRRV
                     LSRLFALENPKMSELERKAKELLNLADAFNHNQALLDIGALICVSKNAKCGICPLYDF
                     CQGKFNTELYPGIKKTSYENANLSLFVFEWDKKFAIQKSQDKLYKGMYNFPFFKEEEG
                     EISKNMKLLGEFKHHYTKYKLNIKVYHQILKEENKNYQFKSLKELESTALSILSLKAL
                     RLIKL"
     gene            complement(1023..2285)
                     /locus_tag="ACJFEZ_001772"
     CDS             complement(1023..2285)
                     /locus_tag="ACJFEZ_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0917856.1"
                     /translation="MQELTRAKKIRSIVAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPIVQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVVSVVLMALGSFMIAAL
                     PSKDVVGDFAIILLLLARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMLFFFSIDEMKDYAWRILFVVGGILALGSLLVRKAMNESATQIHKHE
                     DRGTLKALFTSSWKQFLMVLGITAGGSLAFYTITTYTKTFMENSGMDKTLVNNLFLGA
                     LFILMIIQPLFGYIGDKIGHKRSLIIFCILAFVGIYPIFNLISSNAQNNASLVFILVV
                     LLFIILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAIFGGSAPWVALQFKNAGME
                     NGFFVYIAVLTLLMFIATLCLPKKSELN"
BASE COUNT          856 a          387 c          403 g          688 t
ORIGIN      
        1 ttgttatact ctaacccatg caaaaacaaa tgattcaaaa tttacaagat aaattacttc
       61 tttggtatga taaaaatgga cgcaaaaatt tgccgtggcg caatttagaa agtaaagatt
      121 gtgatgaaag attaaaagat attgatagag cttatggagt ttatatcagt gaaattatgc
      181 tccagcaaac tcaggtaaaa tcagttttag agaagtttta ttttcctttt ttgcaaaaat
      241 ttcctacctt acaaagttta gctaaggcaa acgaagatga gcttttaaag gcttggcagg
      301 ggcttgggta ttacactcgt gctagaaatt taaaaaaagc agctttagag tgtgtggata
      361 aatttgaagg caaattaccc aaaaaacttg atgaattaaa aaatttaagt ggtataggaa
      421 cttataccgc aggagccatt gcttgttttg cttatgatca aaaagtttct tttgtagatg
      481 gcaatatacg ccgtgtgctt tcacgccttt ttgccttgga aaatccgaaa atgagtgagc
      541 ttgaaagaaa ggctaaggag cttttaaatt tagcagatgc ttttaatcac aaccaagcct
      601 tacttgatat aggtgcttta atatgtgtga gtaaaaatgc aaaatgtgga atttgcccct
      661 tgtatgattt ttgccaagga aaattcaata cagagcttta tcctggaatt aaaaaaacat
      721 cttatgagaa tgcaaactta agtctttttg tatttgaatg ggataaaaaa tttgctatac
      781 aaaaaagtca agataagctt tataagggta tgtataattt tccttttttt aaggaagagg
      841 aaggcgaaat ttctaaaaat atgaaattgt taggagagtt taaacatcat tatacaaagt
      901 ataaattaaa tattaaagtt tatcatcaaa ttttaaaaga ggaaaataaa aattatcaat
      961 ttaaaagctt aaaagaatta gaaagtaccg cactttcgat actttcttta aaggctttaa
     1021 gattaattaa gctctgattt tttaggcagg cacaaagttg ctataaacat aagcagagta
     1081 agcacggcga tataaacaaa aaagccattt tccattcctg catttttaaa ttgtaaggcc
     1141 acccaaggtg cagatccccc aaagatggca ttagatatcg cataacccaa gcctgtgcct
     1201 aaggctctta catgttcagg gaaaagtttg gctttaaaaa ttccagccac tgaagtataa
     1261 aaacttagaa taataaataa aagcaccact aagataaaca ctaaagaagc attgttttga
     1321 gcattgcttg atataagatt gaaaatagga taaattccta caaaagctaa gatacaaaag
     1381 atgattaagg atcgcttatg tcctatctta tcgccgatat atccaaaaag cggttgtata
     1441 atcataagta taaataaagc acctaaaaag agattattaa ccagtgtttt atccatacct
     1501 gaattttcca taaaagtttt ggtataggta gtgatagtat aaaacgccaa agatccacct
     1561 gcagtgatac caagtaccat taaaaattgt ttccaagagc ttgtaaataa agctttgagt
     1621 gtccctctat cctcatgttt gtgaatttgt gtcgcgcttt cattcatcgc tttacgcaca
     1681 agaagagagc caagggctaa aattccaccc acaacaaaaa gtattctcca agcataatct
     1741 ttcatttcat caatgctaaa aaagaaaagc attatactga tactagctac tgctaaaagc
     1801 tgtccgccta tgagggttac gtattggaaa gaagagtaaa aaccccgctt gccttctgtg
     1861 gcaagttcgg aaagataggt cgctgctatg ccgtattccc cacctacact tagtccctgt
     1921 atgagtcttg caagtaaaag caagataata gcaaaatccc ccaccacatc tttactaggt
     1981 aaagctgcta tcataaaaga gcctaaagcc attaaaacca cagatacaac catggatttt
     2041 ttacgaccca ctttatcagc taaagaacca aaaagccaag agcctatagg acgcataaaa
     2101 aagcccgcag caaagactcc aaaagcattg atttgctgca cgataggatt atcagaggtt
     2161 gaaaaagtat gagcaaaata agttgctgta aaagcataaa tataaaaatc aaaccattct
     2221 accaaatttc cgctacttgc agctacaata gaacggattt ttttcgctcg agtaagttct
     2281 tgcataaaat ttccttcatt ttaaagtttt aattttttca agtataatgt ggat
//
LOCUS       DBBXRO010000172         2322 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.173, whole genome shotgun sequence.
ACCESSION   DBBXRO010000172 DBBXRO010000000
VERSION     DBBXRO010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.173"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            24..2114
                     /gene="cfrA"
                     /locus_tag="ACJFEZ_001773"
     CDS             24..2114
                     /gene="cfrA"
                     /locus_tag="ACJFEZ_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HGG0917857.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIISASGFAQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGRTPGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNNGREVVGQAN
                     QPFLGQNRDIVAEDIILDTKSVIPLGQNHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDDLRLTFGARYNHHEIFGNNVSPRAYLVYNPTDELTFKGGISTGFRTP
                     YANRLINGTYNYSGQGKFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISSQSYNNSEPIPGIGTCDADRCSRAINHGKVEYKGVELGAGISPLDNLNVNFAYTY
                     LDTEVKEAQDRSVIGKPEQDSLKHNIMLKTEYSFYNKFTPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFDKSFTNGWESYASGSGSTWVNTYNRI
                     EEGRRMYISINGNF"
BASE COUNT          830 a          311 c          438 g          743 t
ORIGIN      
        1 caatatttaa caaaaggaga aaaatgaaaa aaatatgtct atcagtttgc gccattggtc
       61 tcttaagctc caatgccata tcgcaaaatg tagagctaga cagttcgatc attagtgctt
      121 ctggatttgc tcaagatatt aaagaagctc ctgctactat caatgttatt agtaaaaaag
      181 aattacaaag taagccttat agagatgttg cagaggctat cgcagatatc ccaggcgttg
      241 atttatatgc tagcaaggga aaaacaggtt cttataatat cactatgagg ggtattactg
      301 gatatacttt ggttttgatt gatgggcgtc gtcagggtat tggcggagag gtgggcccta
      361 atggttttaa tgaaatttca aattctttct tacctccgat ttctagtata gaaaggatag
      421 aagttataaa aggtcctatg agtactttat atggctctga agctttaggc ggggtggtaa
      481 atatcattac caaaaaagta agtgataaat gggaaacttc tgtaagtttg gatgctcttt
      541 taaatgaaaa taaagattgg ggtaatactt atggaacgag tatttattct agtggtcctt
      601 tgatgaatga caaattgggt ctaacacttc gatttagaga attttacaga cagcaatcta
      661 atgttgaatt tacaaatgga agtggacaaa gagttcaagg ggatcaagct caaagtccta
      721 caaaggcaaa taatttcaac ataggaacaa gaattagtta tttagctaat gattataata
      781 cttttatatt tgatatagat ttttcaagaa atcattacga taataaacaa ggtcaattag
      841 gaactattac aagtccaggt agaacaccag gtagcttaac gggtggttat gcagatatta
      901 tggaagttga taaatttgtg acttatttaa gtcatgaggg tgtttatgaa aacttttcta
      961 tcacttctgg tttgcagtat aatagagtaa gcaataatgg acgcgaagtt gtaggacaag
     1021 ctaatcagcc atttttagga caaaataggg atatagtcgc agaagatatt atcttagata
     1081 caaaatctgt cattccttta ggacagaatc atattttaag cgcaggtggt gaatataggc
     1141 ttgaaaaaat gcaagataaa atagctaatc cgaccaattt tgatcagtat ttattggcaa
     1201 tttttgcaga ggatgagtat agtataaaag atgatttaag acttactttt ggagcaagat
     1261 ataatcatca tgaaattttt ggaaacaatg tttcaccaag agcttatctg gtttataatc
     1321 ctaccgatga acttactttc aaaggtggta tatctacagg ctttagaacc ccttatgcaa
     1381 atcgtttgat aaatggaact tataattata gcggtcaagg taaatttcct atatatggaa
     1441 atcctgattt aaaagaagag acatctttaa actatgaaat agcagctatt tacaataatg
     1501 atttatttta tgtttcagca acaggttttt taacgaattt taaagataaa atttcaagtc
     1561 aaagttataa taatagcgaa ccaatcccag gtattggcac ttgtgatgct gatagatgtt
     1621 ctagagcaat caatcatggc aaggttgaat acaaaggtgt agaacttgga gcagggataa
     1681 gccctcttga taatttaaat gtaaattttg cttatactta tcttgatact gaagttaaag
     1741 aagcacaaga tagaagtgtg ataggtaaac ctgaacaaga tagtttaaaa cacaatatca
     1801 tgttaaaaac cgaatacagc ttctataata aattcactcc ttggataaaa ggcgagtggc
     1861 aaatagatcg ctatatgggt gatactaata tcaatagaga atattacaag gatatctttt
     1921 tagcttccat gggtgtgcgt tatgatatca acaaacaatg gagtatcaat gcagctattt
     1981 ataatctttt tgacaaaagc tttacaaatg gctgggaatc ttatgcaagt gggagtggta
     2041 gcacttgggt aaatacctat aaccgcatag aagaaggaag aagaatgtat atttctatca
     2101 atggtaactt ttaagctttg atagaagaac caaagagctt tcaaaggctt ctttggtttt
     2161 ttattttaat atcttatacc tttaaaaaac tagacaatca attcaattta aaattttcat
     2221 cttattttta tcattgcatt ttcaatctta aaagatagct tatccttata aaaaagtaac
     2281 taataaaact ttagtcatat tgactaaata aaattaagta ta
//
LOCUS       DBBXRO010000173         2320 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.174, whole genome shotgun sequence.
ACCESSION   DBBXRO010000173 DBBXRO010000000
VERSION     DBBXRO010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.174"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            13..819
                     /locus_tag="ACJFEZ_001774"
     CDS             13..819
                     /locus_tag="ACJFEZ_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HGG0917858.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(816..2192)
                     /locus_tag="ACJFEZ_001775"
     CDS             complement(816..2192)
                     /locus_tag="ACJFEZ_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HGG0917859.1"
                     /translation="METLSQTFAERKPPLYKRMFKSLGFWVIVGIVAGIVLGYVNKEM
                     AIASKPGVDYFISALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LALGIFMANIMQPGHGMNLDPKQLDTTSVQKYISQTTEVSASSEIMHILQDAMPRDII
                     TPFTEGKTMQVLVIAIITALIISLMRIEDRQAIQRVLEVIQNFVFKILQVIMYFSPVA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT          840 a          363 c          354 g          763 t
ORIGIN      
        1 aatataagaa taatgagggg tattttttat ataatagcat tgttttcttt actcaatgcc
       61 gatgaactta cagaggcttt agcaaaaaat aataatcaaa attcttggga gcactttgat
      121 tataaaaata ccaaagaagc tccaaaaatt caagaagaga atgtggattt taaaagcact
      181 tttgatagct tactttcaaa aactttagaa aataataatg gtatagataa aacagatggg
      241 aatttagatt ttcaaaacga aaacgcgcag gttaaaaatt taagttctct ttatgagggg
      301 gagaataatt ctttgctttt tcaaaaagaa ctttttgtgg ctcaagataa ttataattac
      361 tcagggggtt taatcaatcg ttatgaaaaa gatgattttt tatttggagt taatggtttt
      421 attgataaac aaaaagaaca aaaagatact aaaagctttg gtacagagtt tggttatagt
      481 aaatttataa aggcttatag taattattat atacccaatg aagcagaaaa aaatttacag
      541 cttggaatga gttttgtaat tccaacttat accgcttttg cttttgatat aagtaaggat
      601 aatgataaaa ctaattatca agtatcttac tctccttata gtgtatttag tttaaattta
      661 ttgcgtcgtg attatagtgc aagagagact gttgatgata ctgttgttca agttggattt
      721 agttttaatt tcaatgaaag ttttttaaaa caatttagga aaaaagataa tactttagag
      781 gaggttaatc gatatgattt cctccaaaga actcactagt tcattccagc attatgaaat
      841 ttttctggat tatccatagc atagcggaat ttttcccaat caatttgttt atcccagatg
      901 gcaacgatta aggctgctac tgaatttcca caaagatttc caaccgctct catttcagac
      961 ataaatttgt caacacctaa aagaacacct atcgcagcta ctggtagaac ttgtgctaag
     1021 gttgcatttg cttcagaaat ttccatattt cctaaagctg caagcgtact tccaagcact
     1081 ataaaacctg atccagttac acccactgca ccttttgaag ctatcattaa tactattaaa
     1141 atgctgattt cgtgtgctaa acttaaattt acattgaagg cttgtgctag aaagattaag
     1201 ctcatagcta gataaatatt tgtacaatca agattaaaac tatatcccgt tggtaaaaca
     1261 agtccgactg ttgctttaga aagccctgct ttttctagtt ttctcattaa aggagcaagt
     1321 gcagactcgc ttgaactggt tgcaaaaacg atcaatactt ctcttgagat aaatctcata
     1381 aatttgaaga tatttacttt tgcaaaataa caaatcagac ctaagattcc aaatataaaa
     1441 acaagacatg aaatcagcat tactaaaagt aaatatgcta agttgatcaa agagccaatt
     1501 ccgtattgag ctatgagtac agccattgct gaaaaagcag caactggact aaaatacatg
     1561 ataacttgta aaattttaaa gacaaagttt tgaattactt caagaactct ttgaatagct
     1621 tgtctatctt ctattctcat taaagaaata ataagagctg taatgatagc aataactaaa
     1681 acttgcatag ttttgccctc ggtaaaagga gttatgatat cccttggcat agcatcttgt
     1741 aaaatatgca tgatctctga acttgcactt acttcagttg tttgagaaat gtatttttgc
     1801 acgcttgtag tatcaagttg ttttggatca agattcatcc cgtgaccagg ttgcattatg
     1861 tttgccataa aaatacctaa agcaagcgct aaggtactta caacttcaaa ataaataact
     1921 gctttagcac ctatacttcc aactttttta aggctttcaa ggctaatgat acctaaaact
     1981 agggtaacaa aaataatagg accaataaga acttttaaag cgcttataaa ataatcaact
     2041 ccaggtttac tcgctatagc catttcttta tttacatagc caagcacaat gcctgcaaca
     2101 atacctacaa taacccaaaa acccaaactt ttaaacatgc gtttatataa tggaggtttt
     2161 ctttctgcaa aggtttgact taaagtttcc aaaataactc cttataattc cacttttaga
     2221 gattaagtta attctaaaag tttagcaaaa aataaataga acatagttta aataattaaa
     2281 acaagttttt agtaaaatca atttttttaa tcgtgttact
//
LOCUS       DBBXRO010000174         2280 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.175, whole genome shotgun sequence.
ACCESSION   DBBXRO010000174 DBBXRO010000000
VERSION     DBBXRO010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2280
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.175"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            18..281
                     /gene="rpsT"
                     /locus_tag="ACJFEZ_001776"
     CDS             18..281
                     /gene="rpsT"
                     /locus_tag="ACJFEZ_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HGG0917860.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAAKNDK
                     NAANEALKIANKSIHAMVSRGFLKKQTASRRVSRLALLVNKIA"
     gene            298..1365
                     /gene="prfA"
                     /locus_tag="ACJFEZ_001777"
     CDS             298..1365
                     /gene="prfA"
                     /locus_tag="ACJFEZ_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HGG0917861.1"
                     /translation="MLASKLDPFLKRFEELNSLLSGSDIISDISKMTALSKEQKNLEP
                     IVLKAKEYLKTLDSIEENKTLLNDAELGELAKEELKNLEELKPKLEEELKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGAGAFSRLKYEGGTHRVQRVPQTESQGRIHTSAITIAVMPEVDDIEIEINPNDL
                     KIDVMRSSGHGGQSVNTTDSAVRITHLPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAQESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAILQDGLF
                     DEVIEPLIAHYQAESLQEQNL"
     gene            complement(1396..2151)
                     /locus_tag="ACJFEZ_001778"
     CDS             complement(1396..2151)
                     /locus_tag="ACJFEZ_001778"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004392 - heme oxygenase (decyclizing)
                     activity [Evidence IEA];
                     GO_process: GO:0042167 - heme catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HGG0917862.1"
                     /translation="MSFESIISHMNDHHQSNLIDLCKKFGAVKDPKGVRLVGVDFEGL
                     DIAYNDKENLRIEFPKKANEETLKDAIIELCMSAKTKKDLSGVAREAKEFMLSFNSVS
                     LATLSADKEVVCSYAPFVNTPWGNYIYISEVSEHFNNIKENPNNIEIMFLEDESKAAS
                     VILRKRLRYKVKASFIERGEVFDKIYDEFEKQTGGEGGIKTIRNMLDFHLVKLEFQKG
                     RFVKGFGQAYDIENENVTHVGANSSPHKFPHKH"
BASE COUNT          813 a          408 c          369 g          690 t
ORIGIN      
        1 tcaaaaaagg aaaataaatg gcaaaccaca aatctgctga aaaaagagca agacaaacta
       61 tcaaaaaaac agaaagaaat agattttata gaacaagact taaaaacatc actaaagccg
      121 taagagaagc tgctgctaaa aacgataaaa acgctgctaa tgaagcttta aaaattgcaa
      181 acaaaagcat tcacgctatg gtaagtcgtg gctttcttaa aaaacaaaca gcgtctcgtc
      241 gtgtaagtcg cctagctctt ctagtaaata aaattgcata atctttcata atttttaatg
      301 ttagctagta aactagatcc ttttttaaaa cgctttgaag agttaaattc tcttcttagt
      361 ggttctgata tcatcagtga tatcagtaaa atgactgcgc tttctaaaga gcaaaagaat
      421 ttagaaccca tcgtcttaaa agctaaagaa tacctaaaaa ctctagatag catagaagaa
      481 aacaaaactt tgcttaatga tgctgagctt ggagaacttg caaaagaaga gttaaaaaat
      541 ttagaagaat taaaacccaa acttgaagaa gagcttaaaa ttttgctatt acccaaagat
      601 ccgaatgatg aaagaaatat ttttcttgaa attcgtgcag gaacaggcgg agatgaagct
      661 tctttatttg taggcgatct tgttaaagcc tatgcaagat atgctgaaaa tcgtggctat
      721 aaacttgaaa tcgttagttc tagcgaagga agtgtgggcg gttttaaaga aattatcatg
      781 ctagttaaag gtgcaggagc tttctcaaga cttaaatatg agggtggaac acatcgcgtt
      841 caacgcgttc cacaaaccga atctcaagga cgcatacaca cttctgctat aactatagcg
      901 gttatgcctg aagtagacga tatagagata gaaatcaatc ccaatgatct taaaatagat
      961 gttatgcgct cttcaggaca cggggggcaa agtgtaaata ctacagattc tgctgtgagg
     1021 atcactcacc ttcctacagg tatagttgta gtcaatcaag atggaaaaag ccagcataaa
     1081 aataaagaaa gtgctatgaa agtcttaaaa gcaagacttt acgaaatgca agaaagcgag
     1141 cgtttggctc aagaaagcga agcaagaaaa tcccaagtag gaagcggcga tagaagtgag
     1201 cgcatacgca cttataattt tccacaaaat cgtatcagcg accatcgcat caatcttacc
     1261 ctatatcgtt tagatgctat tttacaagat gggctttttg atgaagttat cgaacctttg
     1321 atagcacatt atcaagcaga atcattacaa gagcaaaatt tatagtttca ttagtcttga
     1381 aaacaagact aatgattagt gtttatgcgg gaatttgtgc gggctgctat ttgcaccaac
     1441 atgggttaca ttttcatttt ctatatcata agcttgtcca aaacctttta caaaacggcc
     1501 cttttgaaat tcaagtttta caagatggaa atcaagcata ttgcgtatgg tttttattcc
     1561 gccttcgccg cctgtttgtt tttcaaattc atcataaatt ttatcaaaca cttccccacg
     1621 ctcgataaaa ctagccttaa ccttataacg caatctttta cgaagtataa cagaagctgc
     1681 cttgctttca tcctctaaaa acattatttc tatattgttt ggattttctt tgatattatt
     1741 aaaatgctcg cttacttcac tgatataaat ataatttccc catggagtat ttacaaacgg
     1801 tgcataagaa caaaccacct ctttatctgc acttaaagtc gctaaagaaa ccgaattaaa
     1861 actcaacata aactcttttg cttctcttgc cactccgcta agatcttttt tagtctttgc
     1921 actcatacaa agttcgataa tagcatcttt aagggtttct tcgtttgctt ttttaggaaa
     1981 ttctatgcgt aaattttctt tatcattata agctatatcc aagccctcaa aatcaactcc
     2041 gaccaatctt actcccttag gatccttcac tgccccaaat tttttacaaa gatcgatcaa
     2101 attggattga tgatgatcgt tcatatgaga aataatactt tcaaaactca ttatctttat
     2161 cctttcttta aatttataga acaaaatata agttaaaaat ggtatcaatt atcaaattaa
     2221 aaattactta aaaagattaa aatcgtttaa ttttcaaaaa tttattctaa tttaagctta
//
LOCUS       DBBXRO010000175         2090 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.176, whole genome shotgun sequence.
ACCESSION   DBBXRO010000175 DBBXRO010000000
VERSION     DBBXRO010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.176"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..231
                     /locus_tag="ACJFEZ_001779"
     CDS             <1..231
                     /locus_tag="ACJFEZ_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0917863.1"
                     /translation="LTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHI
                     KAQENALIKNILPLEEKLKERKLDKWMERVRR"
     gene            228..2087
                     /locus_tag="ACJFEZ_001780"
     CDS             228..2087
                     /locus_tag="ACJFEZ_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0917864.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVKNAIIVSTGPSLIKQLPLLKKYANKATIFCADSAYVILGKYGIKPDYV
                     CMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWTKEKLNITTYNCTEGGARIEG
                     TIEKPFLWACENLLDKDLNKPFDFPKFLDKKLAKEKLEKTKKYLQKSILESKEFIKKT
                     QTQLQKLRYTLEKNDKNFQTLEKIKNDLLNLFKEFKKLKLFNELCQATYFHNECEILK
                     FEVLNTNKQKENLIDFLKIQHNWFIQGLGYLDTQNKTIEKSLENWNFDDIIKK"
BASE COUNT          846 a          271 c          298 g          675 t
ORIGIN      
        1 ctaacacaat ttgaacttaa tcttgctaga atttatgtct taaatcctaa aaccaaagaa
       61 gatgctttta ataaaagtat tctttggata aaagaacatt tagaatttat ggaattagtt
      121 tatggacata ttaaagcaca agaaaatgct ttgataaaaa atatacttcc tttagaagaa
      181 aaacttaaag aaagaaaatt agataaatgg atggaaaggg tgagaaggtg agagaagagc
      241 tttttttaaa aaatactcaa gctttgtttg aggtcgatga gtttttagct tgtacactaa
      301 gatcacttaa atacttaact tttgcactta tccaagatga aaatggaata aattttaaaa
      361 aagatgatat ttttctttat gaaaatccca ataaagagct tttggaaaac cttactctgt
      421 ttaaaaccga atataacaaa tatcctgttt tgttttttta tggctttgga aatggaatgt
      481 tttataaaac tttatgtaaa aacaaacaac ataaacacat tatcattttt gaagacaatc
      541 ttgaaatttt aactttagct tttcatttat ttgattttag cgaagaatta aaaaaagaac
      601 aactaatact tttttatact ccaaatatta atacagcaca actcaccaca ctttttactt
      661 atgaaatcat tcaaaaaagt gtaaaaattt ttaatctttt tatccataat gatttttatc
      721 aacaatttta tagcactcaa atacaaaata taaatactca actgatagaa atgatacgat
      781 ttatcgtttt aaacaaaggt aatgatccac atgattcttt agttgggatc aaacataccc
      841 tagataatct ccctaaaatg ttaaatcatg gaatttttca agaatttctc aaagaaagaa
      901 gagctaaggt taaaaatgct atcattgttt ctacaggacc aagtcttata aaacaacttc
      961 ctttattaaa aaagtatgct aataaagcta cgattttttg tgcagatagt gcttatgtta
     1021 tccttggaaa atacggtata aagcctgatt atgtttgcat gctagagcgt gatgatatag
     1081 tttctaaatg ttttgataat gattttggcg attttaacaa aggcatactt ttcatacttg
     1141 cttctgtggt tcacaaagaa gtattagatt ttttagaaaa agatcaaaga acttatatgc
     1201 ttgtacatcg ccctttaaat tttgcagcta gtttaaaact tgatgaatat ggatatcttg
     1261 gagtaggaca tagtgtttca aatatgatct atgaactagc aggagcttta agatttgaaa
     1321 atatcatttt tataggacag gatttagctt atggcgagga tggaagttca catcctaaag
     1381 agcatataca tggaagtcaa ggtgaagaaa tcagaggaga aaaatataca ctagcttatg
     1441 ggggaaaagg caaagtaaga acacaactta cttggaattt atttcgtcaa gcttttgaaa
     1501 aagatatatt ttggacaaaa gaaaaactca atatcaccac ctacaactgc accgaaggtg
     1561 gagcaaggat agaaggaact atagaaaaac cttttttatg ggcttgtgag aatttacttg
     1621 ataaagattt aaataaacct tttgattttc caaaatttct agataaaaaa ctagccaaag
     1681 aaaaattaga aaaaacaaaa aaatatctcc aaaaaagcat tttagaatcc aaagaattta
     1741 taaaaaaaac tcaaactcag cttcaaaagc ttagatacac tttagaaaaa aatgacaaga
     1801 attttcaaac tcttgaaaaa atcaaaaatg atcttttaaa tctttttaaa gaatttaaaa
     1861 aactcaagct ttttaatgaa ctttgtcaag ctacttattt tcataacgaa tgcgaaattt
     1921 taaaatttga agttttaaac acaaataagc aaaaagaaaa tttaatagac tttttaaaaa
     1981 tacaacacaa ttggtttatc caaggtttag gataccttga tactcaaaac aaaaccatag
     2041 aaaaaagttt agaaaattgg aattttgacg atataatcaa aaaataatta
//
LOCUS       DBBXRO010000176         1970 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.177, whole genome shotgun sequence.
ACCESSION   DBBXRO010000176 DBBXRO010000000
VERSION     DBBXRO010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.177"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1111)
                     /locus_tag="ACJFEZ_001781"
     CDS             complement(<1..1111)
                     /locus_tag="ACJFEZ_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917865.1"
                     /translation="MTINSANPYQNLALSNPLQNSQALNLIKDKKGSNLEENENNLEN
                     LNYIFNTTSYASEFSFRIDEKGFFEKDLNKIANIPESYNINIKSVRNIAKELTRQDAT
                     LNYNKIDLPYLLNSYYSSLKSVNLEFSENDNANLSRDMISKFATGFSTENGEFLGKIS
                     RIYNNQEELNSALNKTLSLNTLMLDNKITNFHFDRALNNTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNDNELNFFMKPASLDLNAHTNFQKILRGEMDIKDYIKQQNEQK
                     MSFDLYLYVNGVDKKTASQDKLSVFFQQYVNYQKDMDLREFANSSSIFQIYIDENHSE
                     FNSLKEEYQSQNKDLEKLDNANNMRSSSIENFLDRR"
     gene            1264..1455
                     /gene="rpmI"
                     /locus_tag="ACJFEZ_001782"
     CDS             1264..1455
                     /gene="rpmI"
                     /locus_tag="ACJFEZ_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HGG0917866.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1549..1902
                     /gene="rplT"
                     /locus_tag="ACJFEZ_001783"
     CDS             1549..1902
                     /gene="rplT"
                     /locus_tag="ACJFEZ_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HGG0917867.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSKFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
BASE COUNT          680 a          266 c          320 g          704 t
ORIGIN      
        1 gacgacgatc taagaaattt tctatggagc tagaacgcat attattagca ttatctagct
       61 tttctaaatc tttattttgg ctttgatatt cttctttaag agagttaaat tcgctatgat
      121 tttcatcaat ataaatttgg aagatagagc ttgaatttgc aaattctctt aaatccatat
      181 ctttttgata attgacatat tgttgaaaaa aaactgaaag cttatcttga gaagcggttt
      241 ttttatctac tccattcaca taaagatata aatcaaagct cattttttgt tcgttttgtt
      301 gtttgatata gtcttttata tccatttccc ctctaaggat tttttgaaaa ttagtatgag
      361 cattgagatc caaactcgca ggtttcataa aaaaattaag ctcgttatca ttttgtgttt
      421 tgatatcatg ataaataaaa ttcatcaaaa gccctgattt tgaaacttca gcatttttgg
      481 ttaggtaagg ttttaaaatt tcattagatg aggtattgtt taaagctcta tcgaagtgaa
      541 aattagtaat tttgttatct agcattaaag tatttaggct tagagttttg tttagcgcgg
      601 agtttaattc ttcttgattg ttgtaaattc ttgaaatttt gcctaaaaat tccccatttt
      661 cagtagaaaa tccggtggca aattttgaaa tcatatcgcg acttaaatta gcattatcat
      721 tttcgctaaa ttctaaattg acagacttta gcgagctata atagctgttt aaaagatagg
      781 gtaggtctat tttgttataa tttaaagttg catcttgtct tgttaattct ttggctatat
      841 ttctaacact tttgatgttg atattataag attcaggtat attagcgatt ttatttaaat
      901 ctttttcaaa aaaacctttc tcgtctatcc taaagctaaa ttcacttgca taagaagtgg
      961 tgttaaaaat ataatttaaa ttttctaaat tgttttcatt ttcttctaaa tttgaacctt
     1021 ttttatcttt gattaaattc aaagcttggc tattttgtaa aggattggat agggccaaat
     1081 tttgataagg gtttgccgaa tttatagtca ttttaaatct ttcaaaaata ttgctagttt
     1141 tttataagca aaaggtgtgc caagtttttt aaatacaaaa ttcagtcaaa aattagcaaa
     1201 aatttgctag catttagctt ttctttttga aaaaatttaa aaatttatcc gaaaggaaag
     1261 cgtatgccaa agatgaaaag cgtaaaaagc gcagttaaac gctttaaagt aggtaaaaat
     1321 aaaatcaaaa gaggctctgc ttttagaagc catattttga ctaaaaaacc tgcaaaaaga
     1381 atgcgtgatc ttcgcacagc taaatatgtg cacagcacta atgtaaaagc tgtagaaaaa
     1441 atgctaggaa tttaagtttt tgacataagt cattcaaact ctccttaagt tgctaaaaat
     1501 ttaagggcaa gctccaaaat ggacgccact ttatgaaagg aaataaaaat ggcaagagta
     1561 aaaacaggtg ttgtaagacg ccgcagacat aaaaaagttc taaaattagc acgcggtttt
     1621 tatagcggac gccgcaaaca ttttagaaaa gcaaaagaac aattagaaag aagtcttgtt
     1681 tatgcgtatc gtgatagacg ccgcaagaaa agagattttc gccgtctttg gattgtgcgt
     1741 atcaatgctg cttgcagatt aaacgattta agttattcta aatttatcaa tggacttaaa
     1801 aaagcaggca ttgagcttga tagaaaaatt ctagctgatt tagcaatgaa tgatgctgct
     1861 gcttttgcaa aaatcgcaga agctgcaaaa aaagcgcttt aatttaatga gttaagattt
     1921 aaatcttaac tcatgattgt caatataaac tgcatttaaa ttttaaaata
//
LOCUS       DBBXRO010000177         1955 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.178, whole genome shotgun sequence.
ACCESSION   DBBXRO010000177 DBBXRO010000000
VERSION     DBBXRO010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.178"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(5..1123)
                     /gene="truD"
                     /locus_tag="ACJFEZ_001784"
     CDS             complement(5..1123)
                     /gene="truD"
                     /locus_tag="ACJFEZ_001784"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HGG0917868.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANNFTEKELAQIYSISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     ERFKARDISAMGLLIGAKAYEASQGLALNLENEIFKDALEFKAKMQGSRRFMWSYLED
                     VKWRYDEQKAHFCMEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(1092..1913)
                     /locus_tag="ACJFEZ_001785"
     CDS             complement(1092..1913)
                     /locus_tag="ACJFEZ_001785"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HGG0917869.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAIVMNAKPKYALLGLALPNSLGEDEIKALQKGFLKTAKKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT          639 a          378 c          226 g          712 t
ORIGIN      
        1 catttcattc aaacaaattt ttatgcaaaa tttcttctaa aactacagta gcgtaagagc
       61 ctttttgcaa gaaaaactcc atgcaaaaat gggctttttg ctcatcataa cgccatttaa
      121 catcttctaa atacgaccac ataaagcgtc ttgagccttg cattttagct ttaaattcca
      181 aagcgtcttt aaaaatttca ttttccaaat ttaaagccag tccttgacta gcctcataag
      241 ctttagcacc gattaaaagt cccatagcac tgatatctct tgccttaaaa cgttcaagtt
      301 cagcacttaa atcctcgcat aaaaagcatt ttccaaaagg ataatgcccc aaaacctcgc
      361 cttttaaaag cttaaaaaac tgctcttgtt ttttaagttc tttagcttct tctttggaga
      421 tgctataaat ttgtgccaat tctttttcgg taaaattatt tgcaaaatgc gataattcca
      481 ctcttttact caaataacga ttaaaaagct cgctttgaaa agcagagatt aaaaactcct
      541 tcattttgac atttttcatc tttttaccac gtaaaatttc aagcccttct ttgtaattgt
      601 ccccaaattt tccaaagcgt tgataaccaa aataatttgc aaacccctgt ttatctaaat
      661 ttatcaaagc ctgctctaat tttaaagcat cactaggtaa aacttttttt aagcgtataa
      721 aaaaagaatt tccttttaaa tgccctattc ttagcttgtt ttcatgggta aaaatttcta
      781 aaattttaag tttaggatga gaaaaatttg acaaaaaact ctcaaatttt ttaggcatag
      841 aaaggtattg aaaggttgat ccttgcttat ctttaagccc tgcataacca aaatctctta
      901 ttttaacccc gcttgtttcg cttaaaattt ttaaagcttc atttgtggtt aaatcttttt
      961 tattgatatg caaaataaga tgttcaccct taccgctaaa ttcatacaaa ggcctttcac
     1021 gcactacaaa atcatcgcta tttttactaa aatacgcatt aataggactg tgttttaaac
     1081 tatacaaagg cttaaaaatg gtgttctctt cctctaaatt catattttcc tttcactgct
     1141 tttccaaaga tatttaattt cacgccgtgt tttttggcta ttgtttttat attttgacgc
     1201 tctttttcat caaaagcaaa caaaatttca tattcttctc cgctataaag cgtataatca
     1261 tcaagctttt taaaccaaga aataccgcat ttatttaagg ctaaaagtct tgataaatcc
     1321 ttgcttaaac catctgaaat atccatagca caagaaatta aaggtgcgac ttcataaaaa
     1381 aaactagctc ttaattttgg ttttataaat acatggtttg gttttaaagt gcccccattt
     1441 tgtaaaattt caagcccttt taaacttcgt cctaattttc ccgtataagc aagtaaatgc
     1501 ccctttttta aaccttttct aaaaacagct ttatcgttaa tctttgaaat gatagtaaga
     1561 ctaatgtcta ttttatcatt gcttatagta tcaccgccta taattttgat attaaatttt
     1621 ttagccgttt ttaaaaaacc tttttgcaag gccttaatct catcttcacc taggctattt
     1681 ggcaaagcaa gccctaaaag tgcgtatttt ggcttagcat tcatcacaat agcgtctgaa
     1741 atatttacaa gcattgcttt tgtagcaatt tgctctaagc taaaccactc tcttttaaaa
     1801 tgcacatttt caaaaaacaa atccttacta aaacaccaat catcaataat agctccatca
     1861 tcgccgtttt tttcatttaa aaaagctttg attataaaat cttccttatt catgaaaaga
     1921 ttttataaaa tttcctttta aattctagtg aattt
//
LOCUS       DBBXRO010000178         1954 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.179, whole genome shotgun sequence.
ACCESSION   DBBXRO010000178 DBBXRO010000000
VERSION     DBBXRO010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.179"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(48..1253)
                     /locus_tag="ACJFEZ_001786"
     CDS             complement(48..1253)
                     /locus_tag="ACJFEZ_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HGG0917870.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLAIFFTLWYQKLYEELVVVKGTSL
                     RENHRNIIINILNSRFVPMNESASNIAQSTGLKFAIFDKKQAIFDNLDFDFRKAKVEL
                     KGRGIYDGKVFFLDRMNTDNYFLKHTNEDNANTESRLKILIQGEDVKKDLIWIRIKVF
                     SFAIMAFCILGLIAYILVKIALKPLEDKIITLNRFIKDSTHELNTPLSVILMSIEQLE
                     NQKLEHNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLELNKQELDLKALIEERLEYFKI
                     FFEQKKISLKLNLHQASIFASKNQISKLIDNLLSNAIKYNKKGGEISIELKTGFLSIA
                     DTGCGISKSNLKHIFDRYARFNTDQGGFGIGLSLVKKICDDNDIKIICESVENQGSVF
                     ELSWSAKKI"
     gene            complement(1246..1911)
                     /locus_tag="ACJFEZ_001787"
     CDS             complement(1246..1911)
                     /locus_tag="ACJFEZ_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HGG0917871.1"
                     /translation="MAARILLLEDDLSLSEIIEEFLIDEGYEVYLCTNAKEALELAYE
                     KHFDLWILDVKVPLGDGFSLLKELRACGKQTPAIFMTSLNTTEDLKEGYNAGCDDYIR
                     KPFELAELSIRIQVLLKRAFSHKNEDYEDLGNGFKFSFTSQILYHFDKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWEYDEEPSELSLRAYIKNLRKILGKEKIINQRGRGY
                     CYG"
BASE COUNT          671 a          345 c          227 g          711 t
ORIGIN      
        1 tatagagagt ttcaagcaag tggatgcaaa aattttattg tcctttttca aatcttcttt
       61 gcactccagc ttaactcaaa aacactccct tgattttcta cagattcgca aatgatttta
      121 atatcattat catcgcaaat ctttttcacc aaagaaagcc ctatgccaaa acctccttga
      181 tcggtattaa atctcgcata tctatcaaaa atatgcttaa gatttgattt tgaaattcca
      241 caacctgtgt ctgcgatact taaaaaacct gtttttaact ctatcgaaat ttccccacct
      301 tttttgttgt atttgattgc attacttaaa agattatcta tgagtttaga aatttggttt
      361 ttagaagcga aaatacttgc ttgatgtaaa ttaagcttta gactgatttt cttttgctca
      421 aaaaatattt taaaatattc tagcctttct tcaatcaatg cttttaggtc aagttcttgt
      481 ttgttaagct ctaaggtatt gggaaaatta taaaaaacaa gatctgaata cacttgagat
      541 aaactttttg cagctaattt tatccttgtg aatttggtat tatgctctag tttttgattt
      601 tcaagttgtt ctatactcat caaaatcaca cttaaagggg tgttaagctc atgggttgaa
      661 tctttgataa accgattaag agtgataatc ttatcctcta gtggctttag ggcaattttt
      721 actaaaatat aagctatcaa acccaatatg caaaaagcca taatagcaaa agaaaaaacc
      781 tttattctaa tccaaataag atccttttta acatcctcac cttgaattaa aattttcaat
      841 ctactttcag tatttgcatt atcttcattt gtatgtttta aaaaataatt atctgtattc
      901 atacgatcaa gaaaaaatac ttttccatcg taaattcccc tgcccttaag ttcaaccttt
      961 gcttttctaa aatcaaaatc caaattatca aaaatagctt gttttttatc aaaaatagca
     1021 aatttaagtc cagtactttg agcaatattg ctagcacttt cattcatagg aacaaaacga
     1081 gaatttagga tatttataat gatatttcta tgattttctc ttaaagaagt accttttaca
     1141 accactaatt cttcatataa tttttgatac cataaggtaa aaaagattgc taaaaaaata
     1201 cccgtagtag ttaaataaat caataaaatt tgcctaatga cttttttagc catagcaata
     1261 tcctctaccc ctttgattga taattttttc ttttcctaat attttgcgta aatttttaat
     1321 atacgctctt aaactaagct cgctaggttc ttcatcatac tcccaaagct cttcaaagat
     1381 tctttctgta cttaaaaaat tatttttatt ttttaaaagc aaagataata gcttgatctc
     1441 tttactgggt agagttaaag ccttatcaaa atgataaaga atttgtgagg taaagctgaa
     1501 tttaaaccca ttccccaaat cttcataatc ttcattttta tgagaaaaag ctctctttaa
     1561 caaaacttga atacgaattg aaagttctgc aagctcaaaa ggcttgcgta tataatcatc
     1621 acaacctgca ttataaccct ctttcaaatc ttctgtcgta tttaaagaag tcataaaaat
     1681 agctggagtt tgttttccac aagctcttaa ttcttttaat aaagaaaatc catcacccaa
     1741 aggaacctta acatctagta tccacaaatc aaaatgtttt tcataagcaa gttctaaggc
     1801 ttctttagca ttggtgcata aataaacttc ataaccctca tcgattaaaa attcttctat
     1861 aatctcactt aaacttaaat catcttctaa aagcagaatt ctagctgcca caagacacct
     1921 ttctttgata tttcttgaaa ttgtatcaaa aaat
//
LOCUS       DBBXRO010000179         1928 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.180, whole genome shotgun sequence.
ACCESSION   DBBXRO010000179 DBBXRO010000000
VERSION     DBBXRO010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.180"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            62..505
                     /locus_tag="ACJFEZ_001788"
     CDS             62..505
                     /locus_tag="ACJFEZ_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917872.1"
                     /translation="MFKKLLSVVALGTLLSSSAFAEDILAKVSNGAISDNSAGVKVLS
                     LDEMKEVKGGYYFKRDSAFDYGAGSLSSYGYVVMNDSFHQDSNAVTQSLGYSSGYIVA
                     KYRYVNNQKDYYLQYFSSKYGSGTNIWAYANSPAYKILNEFRSKY"
     gene            610..>1928
                     /locus_tag="ACJFEZ_001789"
     CDS             610..>1928
                     /locus_tag="ACJFEZ_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HGG0917873.1"
                     /translation="MSIFSINDNSNYNSILSQAKANKESKENSKISFANAFLKQNASK
                     LNEIQNANSQTLARSEILSNNNALSNNSNSTNISNSSNTNLSINNATKTSSPNYDISS
                     EFKNSIYTLKYKQADLNTDTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIER
                     KAENNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIVNHTFNDTNKTSFTETDI
                     NSMPKGISELSSDKTIGIMPKNYDKLTITNYYNTQERYNEAEQLGMFGHINIGLQPLN
                     FTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTGVLPREGSAT
                     LNPIAKSYAEAMAKESFDGSLTSLDDIMTGKVDFASLLKGYAQDGWLDADIYAMDKGV
                     AWQNTSIGYGGAWFDNQFNQAKANGWKASNQSIDSYVNSIMDRLNNL"
BASE COUNT          740 a          243 c          320 g          625 t
ORIGIN      
        1 tgatttaggg catttattat gataaaatga attatattac attttaaaac aaggagctaa
       61 aatgtttaaa aaactattga gtgttgtagc tttaggtact ttattgtcaa gttctgcttt
      121 tgcagaggat attcttgcta aagtcagtaa tggagcaatt agtgataata gtgcaggtgt
      181 taaagtcctt agccttgatg agatgaaaga ggttaagggt gggtattatt ttaaaagaga
      241 tagtgccttt gattatggtg caggttctct aagttcttat ggatatgttg tgatgaatga
      301 cagttttcat caggattcaa atgcggttac acaatcatta ggttattcta gtggttatat
      361 cgtagccaaa taccgctatg taaataatca aaaagattat tatttacaat atttttcaag
      421 taaatatggt tcaggcacaa atatttgggc ttatgcaaat agccctgctt ataaaattct
      481 aaacgaattc agaagtaaat attaattctc actctctgtt ccattttatt ccaaagtgga
      541 acagatcttg cttatattat tttaatatat ttaggttgaa ggcaaaaaaa tctaaattaa
      601 ggaattaata tgagtatctt tagcatcaat gataactcga actataattc tatactttca
      661 caagcaaaag ctaataaaga aagtaaagaa aattctaaaa taagttttgc taatgctttt
      721 ttaaaacaaa atgctagtaa attaaatgaa attcaaaatg caaattcaca aactctagca
      781 agaagtgaaa tattaagtaa caacaatgca ttaagcaata attcaaattc tactaatata
      841 tcaaatagta gtaatactaa ccttagtatt aataatgcta ctaaaacaag ttctcctaat
      901 tatgatatat ctagtgaatt taaaaactct atttatactc taaaatacaa acaagctgat
      961 ttaaacactg atacagccta tggttatagt gtggataaag atggttatat gggaagtgat
     1021 tttaacaaag ctgcgggact tcctgaagat tttaagatac ataaatctac tttagatgag
     1081 atagagagga aggctgaaaa taactcttat acttcagata taaaaaaata tttaggtata
     1141 gataaatatt atacaaacat agatatggct gaaaccataa aacaatacta taatcaattt
     1201 aatcaaattg ttaatcatac ttttaatgat accaataaaa caagtttcac tgaaacagat
     1261 ataaattcta tgcctaaggg aattagtgaa ttatcatctg ataaaactat aggtattatg
     1321 ccgaaaaatt atgataagct aacaataaca aactattata atacacaaga acgatataat
     1381 gaagcagaac aattaggaat gtttgggcat attaatatag gcttacaacc attaaatttc
     1441 actccgcaaa gtatgcaaac tcaaaattta gataaagaca ctgcaataga tacttttaat
     1501 cctgatatgt cagtttatcc acaaaatgaa gatggaagtt attctaaaga agctttgttt
     1561 atgagctttt taaaatcaac aggtgtattg ccaagagaag gtagtgcaac attaaatcct
     1621 atagctaagt cttatgctga agctatggcc aaagaaagct ttgatggatc attaacttcc
     1681 ttagatgaca ttatgacagg taaggttgat tttgcaagtt tgttaaaagg ctatgcacaa
     1741 gatggttggc ttgatgcaga tatatatgca atggataaag gagttgcttg gcaaaataca
     1801 agcataggtt atggtggagc ttggtttgat aatcagttta atcaagcaaa ggctaatggt
     1861 tggaaagcaa gtaaccaaag tatagactct tatgttaatt ctataatgga tagacttaat
     1921 aatctttt
//
LOCUS       DBBXRO010000180         1822 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.181, whole genome shotgun sequence.
ACCESSION   DBBXRO010000180 DBBXRO010000000
VERSION     DBBXRO010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.181"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(126..>1822)
                     /locus_tag="ACJFEZ_001790"
     CDS             complement(126..>1822)
                     /locus_tag="ACJFEZ_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HGG0917874.1"
                     /translation="EFKPKKEYVCKLLSDEGVKFVIPEYQRPYRWGIDECETLWNDIL
                     EVFGDGENISEYFLGSIVAYQNDKNELEIIDGQQRITTFTLFFRAFYEHFQSERANVK
                     TSYLEGFGKCIWEYDLDHGLDYSKSHLSSRVITDCDNIILNELLNKEINLENLQKSNS
                     RYAKNFNFFYDKLLEFKTTRPLQWEMLCKMFLSKTLFTLIVICDSQESAMTIFNTLNS
                     RGLPLSNADILKGYIYKRVSHKNEFANEWKELEAKIDESNNIKNLDFLFLQFMHVIRA
                     ENKDFDTTTHSVLNFFTKSDKKVYYGAIDNWLYRDNTMYFIKSLANFWDKPENYLSDL
                     SNKYMKILNLFQNDSWKAFVSFLVWRNKDNIDNKDEFSKEFDKYLPILIQYVTLAFLN
                     GNASINVIKEIVFKMNVKLKINESFPAKQNIPSFENFLEVSRNFDSRKTKYILFLYAY
                     VYDDFKQVIDSGSLEVEHILPKQWQNANFNEWDEQSHFEYLENIGNKILLPKKSNIKC
                     IDNFFAKKQIEYSNSNNANLKEVLDLSKRTKNIWTKEDIDNRAQAIYSKMVEFLQG"
BASE COUNT          630 a          299 c          182 g          711 t
ORIGIN      
        1 ataaccaaaa agaatatata aattgtgtgt ataaatatta taagattata aaatcattat
       61 ctgagataga tttataaaat actacttatt ttattccaag agataaaaca tctcttggat
      121 aagatttacc cttgtaaaaa ttctaccatt tttgaataaa tagcttgagc tctattatca
      181 atatcttctt ttgtccagat attttttgtg cgttttgaca aatccaaaac ttcttttaaa
      241 tttgcattat tagaattact atattctatt tgctttttag caaaaaaatt atcaatgcat
      301 tttatattgc tttttttagg tagtaaaatt ttatttccta tattttccaa atactcaaaa
      361 tgagattgct cgtcccattc attaaaatta gcattttgcc attgctttgg taaaatatgt
      421 tcaacctcca aagaaccaga atctataact tgcttaaaat catcataaac ataggcatat
      481 aaaaacaaaa tatacttggt ctttcttgaa tcaaagtttc tacttacctc tagaaaattc
      541 tcgaaactag ggatattttg ttttgctgga aaactctcat ttattttaag ctttacattc
      601 attttaaata caatttcttt aattacatta attgatgcat taccatttaa aaatgctaaa
      661 gtaacatatt gaattaatat tggtaaatat ttgtcaaact ctttactaaa ttcatcttta
      721 ttgtctatat tatctttatt tctccaaact agaaaactaa caaatgcttt ccatgaatcg
      781 ttttgaaata aatttaaaat tttcatatac ttatttgaca aatcacttaa ataattttca
      841 ggtttatccc aaaaatttgc caaactcttt ataaaataca ttgtattatc cctataaagc
      901 caattatcta ttgctccata atatactttt ttatcggatt ttgtgaaaaa atttaataca
      961 ctgtgagtcg tagtatcaaa atccttattt tcggcacgaa ttacatgcat aaattgcaaa
     1021 aacaagaaat ctaaattttt tatattatta ctttcatcaa tttttgcttc caattctttc
     1081 cactcattag caaattcatt tttatgtgaa actcttttat agatatatcc ttttaaaata
     1141 tcagcattgg aaagcggcaa tcctcttgag tttaatgtat taaatatagt catagcagac
     1201 tcttgactat cacagattac tattagcgta aaaagtgttt ttgataaaaa cattttgcat
     1261 aacatttccc attgcaatgg tctagttgtt ttaaattcta atagcttatc atagaaaaaa
     1321 ttaaaatttt tagcatacct tgaatttgat ttttgtaaat tttcaagatt gatttctttg
     1381 tttaataact cgtttaatat gatattatca caatccgtaa tcactctact acttaaatgg
     1441 cttttgctat aatctagacc atgatctagg tcatattccc aaatacattt accgaaacct
     1501 tctaaatagc ttgtctttac attagctcgc tctgactgaa aatgttcata aaacgccctg
     1561 aaaaataatg taaaagtagt aattctctgt tgtccatcta taatttctag ttcattttta
     1621 tcgttttgat aagcaacaat ggaacccaga aaatattcac ttatattttc cccatcgcca
     1681 aagacttcca aaatatcatt ccaaagagtc tcacattcat ctatacccca tctatacggt
     1741 ctttgatatt caggaattac aaatttaacc ccttcgtcac ttaacaattt gcatacatat
     1801 tctttctttg gtttaaattc ca
//
LOCUS       DBBXRO010000181         1821 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.182, whole genome shotgun sequence.
ACCESSION   DBBXRO010000181 DBBXRO010000000
VERSION     DBBXRO010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.182"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..527
                     /locus_tag="ACJFEZ_001791"
     CDS             <1..527
                     /locus_tag="ACJFEZ_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TaqI-like C-terminal specificity
                     domain-containing protein"
                     /protein_id="HGG0917875.1"
                     /translation="PNLKKHLDKFQNVITSDNKPYGLHRARDEKFFTGSPRIVALRKC
                     VGEPKFSYVDFDCYVSATFYVIKTQRINVKYLTAILNSKLIAFWLKHKGKMQGNNYQI
                     DKEPLLNIPIVDTNSKNKKLADELINLADEILKAKEQDKNANTQELENKINSLVYKLY
                     NLTEEEIKIIENKE"
     gene            530..1564
                     /locus_tag="ACJFEZ_001792"
     CDS             530..1564
                     /locus_tag="ACJFEZ_001792"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917876.1"
                     /translation="MENLTEEQKKLFYKFIENIKDENSLKQLEQFLDLIENNAIQNSL
                     KDIAEFNSVYKGNGNNEEMSIKEMVEDIKISQKDIDEIYWKIFDVRSEGENEKNKSSA
                     LIEIEKAKEYANKMQNDYMKFYDKKDSQGNITEEGIISKLKQACNDIETNKDKIEEFE
                     EFYNKIFIGVEADENGKGGRLSLEKYLDEKQTEIKKLISSKKQDLESCLSDYKDKFEN
                     LYKEKNDKIDKLLPGATSVGLSKSYKNQKEEIDKSLMKWNWVFWISISIFIGGAIFYF
                     YHSFDEKFDYVSIFRYFPFWIFSGFFIFYSTKQIAEYKRLRNEYAYKEALNDTYVGYE
                     RAVEKSDNKI"
     gene            1585..1710
                     /locus_tag="ACJFEZ_001793"
     CDS             1585..1710
                     /locus_tag="ACJFEZ_001793"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917877.1"
                     /translation="MLKAAEFNPSSTLGKSKGEHPFKSMMEKTKQKANIDESEEW"
BASE COUNT          795 a          173 c          288 g          565 t
ORIGIN      
        1 atccgaattt gaaaaaacat ttagataaat ttcaaaatgt tatcacttct gataataaac
       61 cttatggttt gcaccgagca agagatgaaa aattttttac aggaagtcct agaatagtag
      121 cacttagaaa atgcgtaggt gagcctaaat ttagctatgt tgattttgat tgttatgtgt
      181 cagcaacttt ttatgtgatt aaaactcaaa gaattaatgt taaatattta actgctattt
      241 taaattcaaa gcttatagca ttttggctaa agcataaagg aaaaatgcaa ggcaataatt
      301 atcaaatcga caaagagcct ttgttaaata ttcccatagt ggatacaaat tctaaaaata
      361 aaaaattagc tgatgagctt ataaatttag ccgatgaaat tttaaaagcc aaagaacaag
      421 acaaaaacgc aaatacccaa gaactagaaa ataaaatcaa ttctttggtt tataaacttt
      481 acaatctcac cgaagaagaa ataaaaatca tagaaaataa ggagtgaaaa tggaaaattt
      541 aactgaagag caaaaaaagt tattttataa atttattgaa aacattaaag atgaaaattc
      601 tttaaaacaa ttagagcaat ttcttgatct aatcgaaaat aatgctatac aaaattcatt
      661 gaaagatatt gcggaattta attctgttta taaaggaaat ggcaataatg aggaaatgtc
      721 tataaaagag atggttgaag atataaaaat atctcaaaaa gatatagatg aaatttattg
      781 gaaaattttt gatgttagat ccgagggtga aaatgaaaaa aataaaagca gtgctttaat
      841 tgaaattgaa aaagctaaag aatatgcaaa taaaatgcaa aatgattata tgaaatttta
      901 tgataaaaaa gattctcaag gtaatataac cgaggagggt attatttcaa aattaaaaca
      961 agcttgtaat gatatagaaa caaataaaga taaaatagaa gaatttgaag aattctataa
     1021 taaaattttt attggtgttg aagcagatga aaatggaaaa ggcggaagat tatctcttga
     1081 aaaatattta gatgaaaaac agactgaaat aaaaaaatta atttcatcca aaaaacaaga
     1141 tttggaaagt tgtttaagtg attataaaga taaatttgaa aatttgtata aagaaaaaaa
     1201 tgataaaata gataaattat taccaggtgc aacttctgta ggattatcta aatcttacaa
     1261 aaaccagaaa gaagaaatcg ataaatcgtt aatgaaatgg aattgggtat tttggatttc
     1321 tatctcgatt tttataggtg gagctatatt ttatttttat cattcttttg atgaaaaatt
     1381 tgattatgtt agtattttta gatattttcc attttggata tttagtggat tttttatctt
     1441 ttatagcact aaacaaatag ctgaatataa aagattgcgt aatgaatatg cctataaaga
     1501 agctttaaat gatacttatg ttggttatga acgagcagtt gaaaagagtg ataataaaat
     1561 ttaaaagata aattattaga aataatgctt aaagccgcag aatttaatcc tagtagcact
     1621 ttagggaaat caaaaggcga acatcctttt aagagtatga tggaaaaaac aaaacaaaag
     1681 gctaatatcg atgaatcaga agaatggtaa cggattaaat agtataaaaa aaattatttc
     1741 taaatgttgc aatacagata attttgatat aagcgaacaa aaaaatgata aggatgtttt
     1801 aattttcaaa atttgctcca a
//
LOCUS       DBBXRO010000182         1816 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.183, whole genome shotgun sequence.
ACCESSION   DBBXRO010000182 DBBXRO010000000
VERSION     DBBXRO010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.183"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1345
                     /locus_tag="ACJFEZ_001794"
     CDS             <1..1345
                     /locus_tag="ACJFEZ_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917878.1"
                     /translation="EKDISNGVNFVKDKYPELNEFNKNFEIIKIKLEEYYNIAVDFNA
                     GLKKIEENKNLTKSYLDLSIELKQQILQELEHAQSIKEDLHSNIELVNKLVSNIVATK
                     NEIISITNNFKNVKSEVQNIVNDAEATIKLKINTILFENQRLNQNMIDLLKRCEKLED
                     EIVGKYEDILKIEDLINSSTGIINDLREAVKQSEQISEDMRSFTAIIKDFKTEISNLK
                     ADLESYGERLKGQLDLKLAQANSSVDAKISSIETLKNQIEAYVEANKNTVDVALANFI
                     ERSKIANEDLGRLAEVARTELANDKTAIESYLLELKKSIVDEMKEVSNSVTDETSGIL
                     AQKNQIELIITQGKSDLDTLINNFNSNYQNKLNEFNSNTNEKLASINSLSEESITNIQ
                     NKTDENISRLDTASEEKLAKFDEIIKDNLGGIYSHIFSIENVLFDKKIIKLSYKE"
     gene            1349..>1816
                     /locus_tag="ACJFEZ_001795"
     CDS             1349..>1816
                     /locus_tag="ACJFEZ_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917879.1"
                     /translation="MADLEQVVNDLNLASQSLQELREKYDGALDLLDNKNTEITGALD
                     SAKSDALQEIQTISDTAISQISQLKDTSLNLVNEAKNTATTEISNKKEEHKQELETKK
                     NEYINEIDAKANEYDIANINAQVQAMDTKITKQINGAKTELNSKIDNKVTKTGN"
BASE COUNT          832 a          217 c          285 g          482 t
ORIGIN      
        1 agaaaaagat ataagcaatg gagttaattt tgttaaagac aaatatcctg aacttaatga
       61 gtttaataaa aattttgaaa ttataaaaat aaaacttgaa gaatattaca acatagctgt
      121 tgattttaat gcaggtctta aaaaaataga ggaaaacaaa aatcttacca aatcctattt
      181 agatttatcc atagaactta agcaacaaat cttacaagaa ttagaacacg cacaaagtat
      241 taaagaagat ttgcattcta atatagagct tgtaaataaa cttgtttcaa atatcgtggc
      301 aacaaagaat gagattatat ctataaccaa taattttaaa aatgtaaaat cagaagttca
      361 aaatatagtt aatgatgctg aagcaacaat aaaacttaaa ataaacacta ttctttttga
      421 aaatcaaaga ttaaatcaaa atatgattga tctactaaag cgttgcgaga agctagagga
      481 tgaaatagta ggaaaatatg aagatatttt aaaaatagaa gatcttataa actcatcaac
      541 tggaattata aatgatttga gagaagcagt aaaacaaagc gaacaaataa gcgaagatat
      601 gagaagtttt acagctatca tcaaagactt taaaacagaa atttctaatc taaaagcaga
      661 tttagaaagc tatggcgaaa gattaaaagg acaacttgat ttaaaattag cacaagcaaa
      721 ctcaagtgta gatgctaaga tttcaagcat tgagactcta aaaaatcaaa ttgaagcata
      781 tgtagaagct aataaaaata ccgtagatgt ggctttagct aactttatag aaagatctaa
      841 aatagctaat gaagatttag gaagattggc tgaagtagca agaacagaac tcgctaatga
      901 taaaacagct attgaaagct atttgctaga acttaaaaaa agtatcgttg atgaaatgaa
      961 agaagtgtca aatagcgtta cagatgaaac aagtggaata ttagctcaaa aaaaccaaat
     1021 agagcttatc ataacacaag gaaaatcaga tttagatact ttaatcaaca actttaactc
     1081 aaattatcaa aacaaactta acgaatttaa ttctaatact aatgagaaat tagcttctat
     1141 taattcactc agtgaagaaa gtataacaaa tatacaaaat aaaacagatg aaaatataag
     1201 cagattagat acagccagcg aagaaaaact agctaaattt gatgaaatta taaaagataa
     1261 tttgggtgga atttattctc acattttttc aatcgaaaat gttttatttg ataaaaaaat
     1321 aattaaatta agttataagg agtaaagaat ggcggactta gagcaagttg taaatgattt
     1381 aaatttggca tcacaaagct tacaagagtt aagagaaaaa tatgatggtg ctttagattt
     1441 actagataat aaaaatacag aaataacagg tgcgctagat agtgcaaaat ctgatgcgct
     1501 acaagaaata caaactataa gcgatacagc tataagtcaa atttcgcagt taaaagacac
     1561 atccttaaat ttggtcaacg aagctaaaaa tacagctaca actgaaatat caaataaaaa
     1621 ggaagagcat aaacaagagt tagaaactaa gaagaatgaa tatattaatg aaattgatgc
     1681 aaaagctaat gagtatgata ttgccaatat taatgcgcaa gttcaagcta tggataccaa
     1741 aataaccaag cagatcaatg gtgcaaaaac ggaattaaat tcgaaaatag acaataaggt
     1801 aacaaaaact ggaaat
//
LOCUS       DBBXRO010000183         1776 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.184, whole genome shotgun sequence.
ACCESSION   DBBXRO010000183 DBBXRO010000000
VERSION     DBBXRO010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.184"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            39..245
                     /locus_tag="ACJFEZ_001796"
     CDS             39..245
                     /locus_tag="ACJFEZ_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HGG0917880.1"
                     /translation="MPIVNIKLAKPALSKEQKAELIADITELLSTKYNKSKERVVVML
                     EDIESYDIGFGGESVEAIKAKANK"
     gene            242..700
                     /gene="bcp"
                     /locus_tag="ACJFEZ_001797"
     CDS             242..700
                     /gene="bcp"
                     /locus_tag="ACJFEZ_001797"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HGG0917881.1"
                     /translation="MSVLKVGDEAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTP
                     GCTTEACDFSANYDKFCDKNAVIIGVSPDGVTSHDKFIAKFNLKHILLSDSEKEVAKA
                     YGAWGLKKNYGKEYEGIIRSTFVIDEAGKIAQIYSNVRVKDHALKVLESL"
     gene            700..>1776
                     /locus_tag="ACJFEZ_001798"
     CDS             700..>1776
                     /locus_tag="ACJFEZ_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HGG0917882.1"
                     /translation="MLVHICCSVDSHYFIEELRKEYPKEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLKAVKGYEDEPEKGARCEICFDLRMGSSVEFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPINAQILPASIEARIALYKKVNLLEKKG
                     IKFEIIRQKFLNYRLLSALIKLDKKAVKSHILFYSHFKNHYTRFSLDEKNLNENLKNG
                     IYKSTKDEISFIEFWRFNSDFKNKWKSFEDFLKHPLKIEEEIKWRNKHFGAYDLSPVI
                     VLEKILPTRYEIVAKSEIYYDVKEV"
BASE COUNT          700 a          196 c          345 g          535 t
ORIGIN      
        1 taaagtttga aataattata aaaatcaaag gagaaaaaat gccaattgta aatattaaac
       61 tagcaaagcc agctttaagt aaggagcaaa aagctgaatt gatagccgat ataactgagc
      121 ttttaagcac aaaatacaac aaaagcaaag aaagggtagt ggtgatgtta gaagatatcg
      181 aaagttatga cataggtttt ggtggtgaaa gcgtagaggc cattaaggca aaggcaaata
      241 aatgagtgtt ttaaaagtag gggatgaggc gccacaattt gaacttttaa atcaagatgg
      301 ggtgaaaatc gctcttaaag attttattgg taaaaaagtg attttatatt tttatcctaa
      361 ggacaatact ccaggttgca ccacagaagc ttgcgatttt agtgcaaatt atgataagtt
      421 ttgtgataaa aatgcagtga ttatcggtgt aagtcctgat ggtgtgacaa gtcatgataa
      481 atttattgct aaatttaatt taaagcacat attattaagt gatagcgaaa aagaagtggc
      541 aaaagcttat ggagcttggg gacttaagaa aaattatggt aaagaatatg aaggcattat
      601 aagatcgact tttgttatcg atgaagcggg aaaaattgcc caaatttata gcaatgtccg
      661 cgtaaaagat catgcactaa aagtgcttga aagtctttaa tgttggtgca tatttgttgt
      721 agtgtagaca gtcattattt tatagaagag cttagaaaag aatatcctaa agaaaaaatt
      781 ataggatatt tctatgatcc taatatccat cctttaagcg aatatgaatt aagattttta
      841 gatgtaaaaa gatcttgtga taagctcggt atcaagcttt ataagggcga gtatgagtat
      901 gaaaaatggc taaaagctgt aaaaggctat gaagatgagc cagaaaaagg tgcaagatgt
      961 gaaatttgtt ttgatctaag aatgggttca agtgtagaat ttgcagccaa aataggagaa
     1021 aaaaagctta caacaacact tttaacaagc cctaagaagg atttagagca gttaaaaaat
     1081 gctttgcaaa aagagtgtga gccttatggg gtggaatttt tagctcctga ttttcgtaaa
     1141 aatggaggca ctcaaaggca atttgcttta gcaaaaaaag aaatgcttta tcatcaaaat
     1201 tattgtggtt gtatttatgg gcttaaaaag caaaagcaag ataaaaactt tattgatgaa
     1261 ttaatgtcac ctattaatgc tcaaatttta cccgcaagca tagaagctag aatagctctt
     1321 tataaaaaag ttaatttatt agaaaaaaag ggtataaaat ttgaaatcat aagacaaaaa
     1381 ttcttaaact accgactttt aagtgcttta ataaagcttg ataaaaaagc cgttaagagt
     1441 catattttat tttattctca ttttaaaaat cattatacaa gatttagttt agatgagaaa
     1501 aatttaaatg aaaatttaaa gaatggaatc tataaaagca cgaaagatga aatcagcttt
     1561 atagaatttt ggcgctttaa ttctgatttt aaaaacaaat ggaaaagttt tgaagatttt
     1621 ttaaaacatc ctttaaaaat agaagaagaa attaaatggc gaaataaaca ttttggagct
     1681 tatgatctta gccctgttat agtgcttgaa aaaattttac ctacaagata tgagattgta
     1741 gccaagagtg aaatttacta tgatgttaag gaagtt
//
LOCUS       DBBXRO010000184         1771 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.185, whole genome shotgun sequence.
ACCESSION   DBBXRO010000184 DBBXRO010000000
VERSION     DBBXRO010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.185"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            11..562
                     /locus_tag="ACJFEZ_001799"
     CDS             11..562
                     /locus_tag="ACJFEZ_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HGG0917883.1"
                     /translation="MRIKLPHIPYITNKIMLDIAHSSFVEIKDNIEKLNPCIKQILED
                     DLMNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFGVILNSEDRHNHL
                     AHRILEELIENDYINFVVSENRVKNLIFSSIDDYLKIYEKLEDEVYEKINNYKTKPIP
                     GSEEYELIFEKLYQEELRKKGMF"
     gene            566..1684
                     /gene="carA"
                     /locus_tag="ACJFEZ_001800"
     CDS             566..1684
                     /gene="carA"
                     /locus_tag="ACJFEZ_001800"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HGG0917884.1"
                     /translation="MKAYIYIENDIFLTAKAFGKGGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSPTFSNFRAQKSLQEYLEE
                     HGKIGVYGLDTRYLVKMLRDSGNLRAVISTEISSKEELKAALEKSAKIDEINFVKEVS
                     TKKSYAHKHGVWNNATQSYNKAKKNTKKVAVIDYGVKANILNELVEVGLEVEVFPYNT
                     KAEELIKLYQKGQIQGVFLSNGPGEPKILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLENKSVEITAQNHNYNVPEELCEVAIITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            1681..>1771
                     /locus_tag="ACJFEZ_001801"
     CDS             1681..>1771
                     /locus_tag="ACJFEZ_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HGG0917885.1"
                     /translation="MNFLPLNFDFLAIFSVAFLSSFGHCYSMCG"
BASE COUNT          673 a          219 c          322 g          557 t
ORIGIN      
        1 aggcttgaaa atgcgtataa aattgccaca tataccttat attacaaata aaataatgtt
       61 agatattgca cattcctctt ttgttgaaat taaagacaat attgaaaagt taaacccttg
      121 cattaaacaa attttagaag atgatcttat gaatgaaaga aagctagatg aaagagttaa
      181 agagctttta gaacaacaag aagatgaaat ggagcttatg caagtagatc gtaaaaatat
      241 gttttggctt gttaagaaaa aattagctcc tgaatttggt gtgattttaa attctgaaga
      301 tagacacaat catttagcgc atagaatttt agaagaactt atagaaaatg attatattaa
      361 ttttgtggta agcgaaaata gagtgaaaaa tttaattttt tctagcatag atgactatct
      421 taaaatttat gaaaaattag aagatgaggt ttatgaaaaa ataaacaatt ataaaacaaa
      481 acctattcca ggtagcgaag aatatgagct tatttttgaa aaactttacc aagaagagct
      541 tagaaaaaaa ggaatgtttt aaattatgaa agcttatatt tatatagaaa atgatatttt
      601 tttaactgct aaggcttttg gcaagggtgg aacttttttt ggcgagcttg tatttaatac
      661 ttctttaaca ggttatcaag agataatatc tgatccttct tatgcagggc aatttatcgt
      721 attttctatg ccagaaattg gtatagtggg aaccaatgaa aatgacaacg aaagtaaaga
      781 aatttttgca agtggcgttt tgatgagaga attaagccct actttttcta attttcgtgc
      841 tcaaaaaagc ttacaagaat acttagaaga acatggaaaa ataggagttt atggactaga
      901 cactcgctat ttggtaaaaa tgttaagaga cagcggaaat ttaagagcag ttatctcaac
      961 tgaaatctct agcaaagaag aattaaaagc agctttggaa aaatctgcaa aaatagatga
     1021 gattaatttt gtaaaagaag taagtactaa aaaatcctac gctcacaaac atggagtttg
     1081 gaataatgct acccaaagtt acaataaggc taaaaaaaat acaaaaaaag ttgctgttat
     1141 tgattatggt gtgaaagcaa acattctcaa tgagcttgtg gaagtgggtt tagaagtaga
     1201 agtttttcct tataatacca aagcagaaga acttatcaag ctttatcaaa aaggtcaaat
     1261 tcaaggtgta tttctttcaa atggaccagg agagccaaaa attttaaaac aagaaattgc
     1321 tgaaattaaa aaattagccg aggctaaaat tcctatgctt ggaatttgtt tagggcatca
     1381 gcttttaagt aatgcttttg gatatgaaac ttataaaatg aaatttggac aacacggagc
     1441 taatcatcct gtgatcaact tagaaaacaa aagtgttgaa atcactgctc aaaaccataa
     1501 ttataatgtt cctgaagagc tttgcgaagt agcaattata acgcatagaa atctttttgg
     1561 agataatgtc gagggtgtaa ggtataaaga ctatcctatt atttcggtgc agcaccatcc
     1621 tgaaagttca tcaggtccgc acgaaagtaa atatattttt aaagaattta tgaatttaat
     1681 gtgaatttcc ttcctctaaa ttttgacttt ttggctatat ttagtgtagc ctttttatcg
     1741 agctttgggc attgctattc tatgtgtggg g
//
LOCUS       DBBXRO010000185         1742 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.186, whole genome shotgun sequence.
ACCESSION   DBBXRO010000185 DBBXRO010000000
VERSION     DBBXRO010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.186"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(23..694)
                     /gene="hsrA"
                     /locus_tag="ACJFEZ_001802"
     CDS             complement(23..694)
                     /gene="hsrA"
                     /locus_tag="ACJFEZ_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HGG0917886.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLASWNLPDGDGAELVNTIKHKSPRTSVMIMSAKADKDTEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            complement(773..1090)
                     /locus_tag="ACJFEZ_001803"
     CDS             complement(773..1090)
                     /locus_tag="ACJFEZ_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HGG0917887.1"
                     /translation="MQSHINIKMQFKCIIGILKFERKKKQKVCIYLTAKANDFLDYAK
                     VSKKIKKYYKKEQFLTLEESLEFVCAKLHRKFPQIYYIKIKTYKPEIIKNARVGVKLK
                     KFY"
     gene            complement(1075..1686)
                     /gene="plsY"
                     /locus_tag="ACJFEZ_001804"
     CDS             complement(1075..1686)
                     /gene="plsY"
                     /locus_tag="ACJFEZ_001804"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HGG0917888.1"
                     /translation="MENLIIYAIAYLLGSIPFGLILAKQFAQINIQNQGSKSIGATNV
                     LRVVKEKDPALAKKLAIATIVLDFAKATIPLLVLKFLNYDLNLLWTVAVLTVFGHCFS
                     IYLLFEGGKGVATGAGAMIVLLPLELITAFIVWFIVGKIFKISSLASLLALLVFIGSS
                     FIFNYDMQTIKTHAPVFIIAFIIIYKHLPNIKRLVFKEECKVI"
BASE COUNT          597 a          268 c          239 g          638 t
ORIGIN      
        1 tgcaccaaag ggtgcaaaat gcttaggatt ttttaggaaa acagaagcga taccctctgc
       61 gtctaacagt ttctatagta gagatattta aaggtttgtc cattttttgg cgtatttgat
      121 tgatcgctac ttcaattaca ttaggcgtaa caagttcagg ttcttcccaa atagcatcta
      181 aaagttgttc tttagataca atttgatctg aatgtcttgc taaatgagtt aaaacttcaa
      241 aaggctttcc tttaagttct atatcttggc ctttataggt tattttctct tcatcagggt
      301 caataactaa atcttctatt ttgattacat ttgtaccacc aagtctaagt cttgcttcta
      361 ttctggccaa taaaatatca aaatctaaag gtttttttac aaaatcatct gctccagctt
      421 tgagtgcttt aatttctgta tctttatctg cttttgcaga catgatcatc acagaagttc
      481 ttggagactt atgcttaatt gtattgacaa gttctgcacc atcgccatca ggcaaattcc
      541 agcttgcaag tactaagtcg tagtgtctta taccgataaa atattcaccg tctttgaaat
      601 tttctgaaga gtcagtttga taaccaaatt cattaagatt atctataata gttttattaa
      661 ggctaatctc atcctctata actaaaatcc tcatcattat atccttcatt aagaaatttt
      721 taaaaaagta taacatagtt taagtaaatg tttagatatc tttaaacaaa atttaataaa
      781 atttttttaa ttttacacca actcttgcat ttttgattat ttcaggttta taagttttga
      841 ttttaatata gtaaatttgc ggaaattttc tatgtaattt cgcacaaaca aattctaaag
      901 attcttctag ggtaagaaat tgttcttttt tatagtattt tttgattttt tttgatacct
      961 tggcataatc taaaaaatca tttgctttag ctgtaagata aatacaaacc ttttgttttt
     1021 tcttgcgttc aaattttaat attcctataa tgcatttaaa ctgcattttg atatttatat
     1081 gactttgcat tcttctttaa aaaccaatct tttgatattg ggtaagtgtt tataaatgat
     1141 tataaaagct ataataaata caggtgcatg cgtttttata gtttgcatat cataattaaa
     1201 gataaaagaa cttcctataa aaactaataa agccaataaa gacgctaagg atgaaatttt
     1261 aaaaatttta cccacgataa accaaactat aaatgctgtt atgagttcca aaggtaaaag
     1321 tactatcata gcacccgctc cagttgcaac ccctttgccg ccttcaaata aaagatagat
     1381 ggaaaagcaa tgtccaaata ccgttaaaac tgcgacagtc caaagtaaat ttaaatcata
     1441 atttaaaaat ttaagtacga gtaagggtat agttgctttt gcaaagtcta aaacaatagt
     1501 agcgattgca agttttttag ctaaagctgg atctttttct ttaacaaccc ttaatacatt
     1561 ggttgcgcct atactttttg agccttgatt ttgtatattg atttgagcaa attgcttggc
     1621 taaaattaaa ccaaaaggaa tagagcctaa aagataagca attgcataaa tgattaaatt
     1681 ttccattatt aaccttaaga aataattgaa gcattatatg caaaaaaaat aaataaatca
     1741 aa
//
LOCUS       DBBXRO010000186         1683 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.187, whole genome shotgun sequence.
ACCESSION   DBBXRO010000186 DBBXRO010000000
VERSION     DBBXRO010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.187"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            301..>1683
                     /locus_tag="ACJFEZ_001805"
     CDS             301..>1683
                     /locus_tag="ACJFEZ_001805"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HGG0917889.1"
                     /translation="MAVIFSIFCIWINIKILNLKLKEIQIKPIFFIFLNILLIYAYVV
                     ALRGHFTYNALRVSSYEFSTIKAFNEISTNPLMAFSWAYKEYKNQQEFKSVDTKQLNQ
                     LEEKLFPMFDTTLPHQNHAKNHIYVNIMESFGLNLAEFSTKKIDLFGNLKKHFEQDIV
                     FTRFLSSANNTIESLNRLIFLSPNTISNGLYQKEELAFTPLQIYKNAGYRIIFVYSGN
                     ASWYNLGNYFKNQGADQIIDENTLMQDFPQAKETKHKYGIADEFMYKKIYSIFENAKS
                     PTLVISLSISTHRPYIHKSKKQLIDTENLDEKILNQFIIDNSTEALNTYAYANDEFGM
                     FLDRIKESKFKENIIIAATGDHRFRDIKMDINSQKAFAYSVPFYLYLPKYLKNDIYYD
                     KNRVGSHKDIFPTLYNLTLNNTKYLSLGGRNMLAPIKNQKLEFGFNEVVWIDQDGVYD
                     GNKGYYFENNA"
BASE COUNT          604 a          211 c          237 g          631 t
ORIGIN      
        1 tttagtgcta tttttttacc tttatttttg tgcggtttat tttcttatat aggtttagcc
       61 tttaaaaata gaaaatataa tatcatgggg ggggtaatct ctaaatttta tttttacctt
      121 tctagtcttt atatagcttt tatatctttt attgttttaa tttccacttt tatacattat
      181 tattattttc aactctatgc gagtaaaatt gatattttta tttttggttt aaaagatgac
      241 gatactaaag ctatactatc tatagtcttt tctgattatc ctattataag aatgcttctt
      301 ttggctgtga tttttagtat attttgcatt tggatcaata ttaaaattct taatttaaaa
      361 ttaaaagaaa tacaaataaa gccaatattt tttatctttt taaatatttt actaatctat
      421 gcttatgttg tggcattgcg aggacatttt acttacaatg ccttaagggt ttcaagctat
      481 gaatttagca ctataaaggc ttttaatgaa atttcaacaa atcctttgat ggctttttct
      541 tgggcatata aagagtacaa aaatcaacaa gaatttaaaa gtgtagatac aaaacagctt
      601 aatcaattag aggaaaaact ttttcctatg tttgacacta ctttaccaca tcaaaatcat
      661 gccaaaaatc acatttatgt taatatcatg gaaagttttg gtttaaattt ggcggagttt
      721 agcactaaaa aaattgatct ttttggaaac ttaaaaaaac attttgagca agatattgtt
      781 tttactaggt ttttatctag tgcaaataat actatagaaa gccttaatcg tttgattttt
      841 ttaagcccaa atactatttc aaatggttta tatcaaaaag aagagttggc cttcacacct
      901 ttgcaaattt acaaaaacgc aggatataga ataatatttg tttatagtgg taatgcttct
      961 tggtataatc ttggaaatta ttttaaaaat caaggtgcgg atcaaatcat agatgaaaat
     1021 acacttatgc aagattttcc acaagctaaa gaaacaaaac ataaatatgg catagctgat
     1081 gagtttatgt ataaaaaaat atattctatt tttgaaaatg ctaaaagtcc cacgcttgtc
     1141 atctctctta gtatttccac tcataggcct tatatacaca aaagtaaaaa acagcttatt
     1201 gatacagaaa atctagatga aaaaatatta aatcaattta ttattgataa ttccacagaa
     1261 gctttaaata cttatgcgta cgcaaatgat gaatttggaa tgtttttaga tcgcataaaa
     1321 gaaagtaaat ttaaggaaaa tattattatt gctgctacag gcgatcacag gtttagagat
     1381 attaagatgg atataaactc tcaaaaagct tttgcttata gtgtgccttt ttatttatat
     1441 cttccaaagt atttaaaaaa tgatatttat tatgataaaa accgcgtagg ttcacataag
     1501 gatatttttc caacgcttta caatcttact cttaataaca caaaatattt aagcctaggt
     1561 ggaagaaata tgctagcacc tataaaaaat caaaaattag aatttggttt caatgaggtt
     1621 gtttggattg atcaagatgg agtatatgat ggaaataaag gttattattt tgaaaataat
     1681 gct
//
LOCUS       DBBXRO010000187         1634 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.188, whole genome shotgun sequence.
ACCESSION   DBBXRO010000187 DBBXRO010000000
VERSION     DBBXRO010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.188"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..422
                     /locus_tag="ACJFEZ_001806"
     CDS             <1..422
                     /locus_tag="ACJFEZ_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917890.1"
                     /translation="FGDYKIFKDRRNLTSEVYAIVDFTQYELENLNKGLCGAGEDKCQ
                     NPSRDRLFAWLQVSANSPADYRPVYKVKRQIKYSNLGQPYVLFTYGVAVYNVNNGQIY
                     QYNSSPMLNNNRIIREFAHQYKSVIEDAMGGWNPRLF"
     gene            443..1219
                     /locus_tag="ACJFEZ_001807"
     CDS             443..1219
                     /locus_tag="ACJFEZ_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917891.1"
                     /translation="MISLNSHYPNINYPNNALSIKKDENNEYAYAKKDEPKSEEDAYW
                     EDFVQKYFGEMLSKEYANKYGYNGDPDVKEVENSLLERMRKDKLTEEEWEILNGAYDI
                     DNIEFIPRDKIARIREANLLKTLTSASEFARIWVAEKDERKKRFIDALDVKPLTQEEI
                     DRFLNKQQSSNSTQESNENGQNPDEKPFKAIQSESQNKETYKDDSKMNELVKKLLENK
                     FGKSEELELLFGVKFSDDNTGEFNKILSLNSTPKSIDIKA"
     gene            complement(1402..1572)
                     /locus_tag="ACJFEZ_001808"
                     /pseudo
     CDS             complement(1402..1572)
                     /locus_tag="ACJFEZ_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          632 a          220 c          267 g          515 t
ORIGIN      
        1 tttttgggga ttataaaatt tttaaagaca gacgcaattt aacctcagaa gtttatgcta
       61 ttgtagattt tacgcaatat gaactcgaaa atcttaacaa aggtttgtgc ggtgcaggag
      121 aagataaatg tcaaaatcct agtagagaca gattatttgc ttggttgcaa gtcagtgcga
      181 attcccctgc tgattatcgt cctgtatata aggtaaaaag acaaattaaa tattcaaatt
      241 taggacagcc ttatgtttta tttacttatg gggttgctgt ttataatgta aataatggac
      301 aaatctatca gtataattcc tctcctatgt taaataacaa tagaattata agagaattcg
      361 cccatcaata taagagcgtg atagaagatg ctatgggtgg ttggaatcca agattgtttt
      421 agtattttaa aaaaggattt ttatgataag tcttaattct cactatccta atatcaatta
      481 tccaaataat gctttaagta ttaaaaaaga tgaaaataac gaatatgctt atgctaaaaa
      541 agatgagcca aaaagtgaag aagatgctta ttgggaagat tttgtgcaaa aatactttgg
      601 agaaatgctt agtaaagaat atgcgaacaa atacggctat aatggagacc cagatgttaa
      661 agaagttgaa aattccttgc ttgagcgaat gcgaaaagat aaattaactg aagaggaatg
      721 ggaaattctt aacggagcgt atgacattga taatattgaa tttattccaa gagataagat
      781 tgccagaata cgcgaagcca atcttctaaa aactcttaca agtgcgagtg aattcgcaag
      841 aatatgggtt gctgaaaaag atgaaagaaa aaaacgattt attgacgcac ttgatgttaa
      901 accacttact caagaagaga tagataggtt tttaaataaa caacaaagct caaattctac
      961 ccaagaaagc aacgaaaatg gtcaaaaccc agatgaaaaa cccttcaaag ccatacaaag
     1021 cgaaagtcaa aacaaagaaa cttacaaaga tgatagtaaa atgaatgaac ttgtaaaaaa
     1081 actgctagaa aataaatttg gtaaaagtga agaattggaa cttctttttg gtgtgaaatt
     1141 tagtgatgat aacacaggag aatttaataa aattctttct ttaaattcta caccaaaaag
     1201 tatagatatt aaggcttgaa acattaaaaa ctttgattta aaatacaatc aaataaaaag
     1261 atttttataa ctttgggctt ctttagcctt taaaactctt tgtttatcca agtagaaaag
     1321 ctcttcggca ttgtctttga gtttttgcaa ggaatttata tccttaaatt ttctaactct
     1381 aaatcctatt atttttccat ttgttatatt aggataaaga gaatacgagt ttgcatttcc
     1441 tgtgctaagt aaagaaaagc ttgtaatgct tcttaagcct atttgctttt taaataaact
     1501 gtctatattt agctcatcac tagcaaaaac acaattaact aaaaccataa atgctaagaa
     1561 aatttttttc attgtcaatc cttacatttt aaataatcag ctcaagttaa ttttaaaatt
     1621 taatccttga tatt
//
LOCUS       DBBXRO010000188         1537 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.189, whole genome shotgun sequence.
ACCESSION   DBBXRO010000188 DBBXRO010000000
VERSION     DBBXRO010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.189"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>1537
                     /locus_tag="ACJFEZ_001809"
     CDS             <1..>1537
                     /locus_tag="ACJFEZ_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0917892.1"
                     /translation="NGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGI
                     LFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLQTSSLDIEFFSNF
                     CSSKPFFQFSRIYFLELMSHYYERFHEDVLGLNKKLAENFKNSIVFHGNDPLDALQGI
                     EQFVYNLPQMITHPSYKELLSKRKGVSDTAIIVSTGPSLTKQLPLLKKYASKATIFCA
                     DSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLT
                     KKTDNFTIVSTYASFIQYLKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAY
                     AENGNSHPDDYQNSANYESQMYEHILTEAYGGKEKIKTHHVWLMFKRNLEQDVQKIQK
                     YLDTKVYNCTEGGARIKGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKA
                     YYKVCQSIEHCRDFSKILSNDFEKIQSVYLSLNEKEEYLNLAIEKIDEFKNKLEDIKQ
                     MQD"
BASE COUNT          574 a          183 c          225 g          555 t
ORIGIN      
        1 ataatggggg ggggtataat gaaaatttac tttatcaaga tcccattaaa gaattgcaaa
       61 ctatgctaaa cacttataat gataaatatc tactttatcc tgtattatat ttttatggtt
      121 ttggaaatgg aattttattt aaagctttat tgcaaaataa aaatcatcaa catattgttg
      181 tttttgaaaa agatatagaa atcatttgga taatgtttca tatcttagat ttttcaaatg
      241 aattgcaaaa ttcaagattg atggttttgc aaacaagttc tttggatata gaattttttt
      301 ctaatttttg ctctagcaaa cctttctttc aattttctag aatttatttt ttagaactaa
      361 tgagtcatta ttatgaaaga tttcatgaag atgttttagg attgaataaa aaattagcag
      421 aaaattttaa aaattctatt gtttttcatg gcaatgatcc ccttgatgct cttcaaggta
      481 tagaacaatt tgtttataat cttcctcaaa tgattaccca tcctagttat aaagaattac
      541 tttctaaaag aaagggtgta agtgatacag ctatcattgt ttctacagga ccatctctta
      601 ctaaacaatt gcctttatta aaaaaatatg ctagtaaagc tacgattttt tgtgcggatt
      661 cttcttatcc tattttagct aaacatggta taaagcctga ttatgtttgt atgctagaaa
      721 gaactgaaat tactgctgag tttttcaatc atgattttgg agaatttgat aatggaattt
      781 gttttattat caaatccata gtacatccta atgccataaa ttacctaacc aaaaaaaccg
      841 ataattttac tatagtttca acctatgcaa gttttataca atatttaaaa ttagattatt
      901 ttggatattt taacatggga tttagtgttg cacatatggc ttgttatctt tccttacatt
      961 taaatcataa aaacatcatt tttataggac aggatttagc ttatgctgaa aatggcaatt
     1021 ctcatcctga tgattatcaa aattcagcta attatgaaag tcaaatgtat gaacatattt
     1081 taaccgaggc ttatggtggg aaagaaaaaa tcaaaactca ccatgtctgg cttatgttta
     1141 aacgaaattt agagcaagat gtgcaaaaaa tacaaaagta tttagatact aaagtttaca
     1201 actgcaccga aggtggagca aggataaaag gaaccataga aaaacctttt ctatgggctt
     1261 gtgagaattt acttgataaa gatttaaata aaccttttga aaaattagaa cctttaagtt
     1321 taaataaaca aaatgagttt ttacttaagg cttattataa agtttgtcaa agtattgaac
     1381 attgtagaga ttttagtaaa atactcagca atgattttga aaaaatacaa agtgtatatt
     1441 tgagtttaaa tgaaaaagaa gaatatttaa atttagctat tgaaaaaata gatgagttta
     1501 aaaataaact tgaagatata aaacaaatgc aagattt
//
LOCUS       DBBXRO010000189         1526 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.190, whole genome shotgun sequence.
ACCESSION   DBBXRO010000189 DBBXRO010000000
VERSION     DBBXRO010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.190"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            46..1476
                     /gene="glnA"
                     /locus_tag="ACJFEZ_001810"
     CDS             46..1476
                     /gene="glnA"
                     /locus_tag="ACJFEZ_001810"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HGG0917893.1"
                     /translation="MGKFVNNVNEFFDFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     SEETFEAGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIIDTTHCSKYEVDTE
                     EGEWNDDKDFADSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYIVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKDGVNLFYDKEGYGGLSQTAINYIGGVLKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARVEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRYNAFLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT          515 a          230 c          284 g          497 t
ORIGIN      
        1 aatatgatac aattttcata aattatctta aagaaggagt aaaagatggg caaatttgtt
       61 aacaatgtta atgaattctt tgatttttgt aaacaaaacg aagttctttt tgtagatttt
      121 cgctttactg atatgatagg aacttggcat catatcacct ataatcttca tgcaattagc
      181 gaagaaactt ttgaagcagg aattccattt gatggtagtt caattcatgg atggcaacct
      241 attgaaaaat cagatatgat tttaaaacct gatgcgcaaa gtgcattttt agatcctttt
      301 acagctgatc ctactattat agttttttgc gatgtttatg acatttataa aggacaaatg
      361 tatgaaaaat gtccaagaag tatagcaaaa aaagcaatgg aacatcttaa aaatagtggc
      421 atagctgata ctgcttattt tgggcctgaa aatgaatttt ttgtttttga cagtgtaaaa
      481 attatagata caactcattg ttctaaatat gaagtggata cagaagaagg agagtggaat
      541 gatgataaag atttcgcaga tagctacaat acaggtcatc gtccacgaaa caaaggcgga
      601 tattttcctg ttcaacctat agattctttg gtagatattc gctctgaaat ggttcaaact
      661 cttgaaaaag taggacttaa aacctttgtt caccatcacg aagttgcaca agggcaagcg
      721 gaaattggag taaattttgg cacacttgtg gaggctgcag ataatgtaca aatctacaaa
      781 tatattgtca aaatggtagc tcatttaaat ggcaaaactg caacttttat gccaaagcct
      841 ctttatggtg acaatggaaa tggtatgcat gttcatatga gtctatggaa agatggtgtg
      901 aatttattct atgacaaaga aggttatgga ggacttagcc aaactgctat taattacata
      961 ggtggggttt taaaaaatgc tcgttctgtt gcagctttta ctaatccaag ctcaaattca
     1021 tacaaaagaa tagttccagg ttttgaagct ccttgtattt taacttattc ttgccaaaat
     1081 agaagtgcaa gttgtcgcgt gccttatggt ataggtaaga attcagctcg tgttgaaatt
     1141 cgtttccctg atagcaccgc taatccttat ctagcttttg ttagtctttt aatggcagga
     1201 cttgatggaa tcaaaaacaa aaccattcct gtaggaccta tggatgaaaa cttatttgat
     1261 cttactttag atgaaattcg tgaaaaaggc atagagcaac taccacacac tctaagagga
     1321 agtcttgaag ctttaattcg ttacaacgct ttcttaaaac ctgtaatgag cgatattttt
     1381 atagatgatt atcaacattt gaaatttgaa actcaagttt ggcctgttga agcgcgtcca
     1441 actgcatacg aatttaaaac ttgctattct tgctaaataa aaagcaaagc gtaaattttt
     1501 aaacgctttg ctttatttat tgataa
//
LOCUS       DBBXRO010000190         1511 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.191, whole genome shotgun sequence.
ACCESSION   DBBXRO010000190 DBBXRO010000000
VERSION     DBBXRO010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.191"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            231..860
                     /locus_tag="ACJFEZ_001811"
     CDS             231..860
                     /locus_tag="ACJFEZ_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917894.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRRKEYEIYGPMV
                     DRVYLDNAIYVKVMASGRDVKTDNVPIKTGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVLIKTNLGEASAALKFNITIEYTKEN
                     QKLTRENTKSAGSFRDTRTYINLVVDKNTDSQICEKLLDDVERYFIGGG"
     gene            complement(884..>1511)
                     /locus_tag="ACJFEZ_001812"
     CDS             complement(884..>1511)
                     /locus_tag="ACJFEZ_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HGG0917895.1"
                     /translation="SVIVGIALFSSSALAAEESGFFIGADAAYVQTKVKGDLKHNKTG
                     AVFNGDLSSSIPILGLRMGYRFNDLHRLYAAYNYSDEFSDIIRTPNLRIEGDFNTHKF
                     LLGYDFTPEIFKRVRAVAGGYLGYAKTSIDLKTSLLSLSQDFDGFVYGAKIGAIFELG
                     ASNEIEVGFKAEQIEYNTRNYYQEAIGSNFYDPRQTNYGLYLGYTYKF"
BASE COUNT          566 a          238 c          222 g          485 t
ORIGIN      
        1 gtttaggatg agtgagagtt gcagcatcag gttaaagtga ttttctttat ttttttgctc
       61 tttgacttga attgaatttg aatttttaaa aacctgtgtc attgtcgcct ccttcataaa
      121 attatatagt ttcgaattta gcatattttt agttaataca caaaataaaa atttacaaat
      181 taagaaattt attgttataa ttgtaatttt aagtaacaaa aaggatgttg atgttaaaag
      241 agcttttaga aatcaaaaaa gaaatggagc ctgttatcca tgaagctaat gtaaaattaa
      301 atgtattggc tcgtgaagta atagttcgta gaaaagagta tgaaatttac ggacctatgg
      361 tagatcgtgt ctatcttgat aatgcaattt atgttaaagt tatggcaagt gggcgcgatg
      421 tcaaaactga taatgtccca atcaaaacag gtttttacat ggtttttgtt gctcctgaaa
      481 aagaaagtac aaaagatatc aaaaataaac tcaaagtagc ttatgaagga cttgataaca
      541 aatttatcgc tacacttata cgatcttgcc aacgctttaa agagatcata aacaaaaccc
      601 aagctacact tgctaaagct tcgaaaatga atgttttaat aaaaaccaac ctaggagaag
      661 caagcgcggc tcttaaattt aacatcacca tagaatacac caaagaaaac caaaaattaa
      721 cacgcgaaaa tacaaaatcg gcaggaagtt ttagagatac tagaacttat atcaatcttg
      781 tagtagataa aaatactgat tctcaaattt gtgaaaaatt gctagatgat gtagaaagat
      841 attttatcgg tgggggttga aatcctaccg ataaaatact tcattagaat ttgtaagtat
      901 aacctaaata taaaccataa tttgtttgtc ttggatcata aaaattcgac cctatagctt
      961 cttggtaata atttctagta ttgtattcga tttgttctgc tttaaaacct acttcgattt
     1021 cattagaagc gcctaattca aatatagcac ctatttttgc tccgtaaaca aaaccatcaa
     1081 aatcttgaga taaagataat aaagatgttt ttaaatcaat acttgttttt gcatagccta
     1141 aatatccacc cgcaacagct cttactcttt taaaaatttc tggagtaaaa tcatagccta
     1201 gcaagaattt atgtgtgtta aaatcaccct ctattctaag attaggagtt cttataatat
     1261 cactaaattc atcagaataa ttataagcag catacaatct atgtaaatca ttaaaacgat
     1321 aacccattct taaacctaaa ataggaatgc tactagataa atcaccatta aaaacagcac
     1381 cggttttatt atgttttaaa tcccctttaa ctttagtttg aacataagct gcatccgcac
     1441 ctataaaaaa acctgattct tctgcagcta aagctgaact tgaaaatagc gcaataccca
     1501 caattacact t
//
LOCUS       DBBXRO010000191         1497 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.192, whole genome shotgun sequence.
ACCESSION   DBBXRO010000191 DBBXRO010000000
VERSION     DBBXRO010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.192"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..779
                     /gene="fdhD"
                     /locus_tag="ACJFEZ_001813"
     CDS             <1..779
                     /gene="fdhD"
                     /locus_tag="ACJFEZ_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HGG0917896.1"
                     /translation="PLFTTQILKYKGKDLFTCDDTLVREIKLEIFINDEKVGALMATP
                     VDEQALAVGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVISG
                     CGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLFVD
                     EKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPVLV
                     SRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            772..>1497
                     /locus_tag="ACJFEZ_001814"
     CDS             772..>1497
                     /locus_tag="ACJFEZ_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HGG0917897.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLK"
BASE COUNT          572 a          171 c          305 g          449 t
ORIGIN      
        1 aacccttatt tacaactcaa attttaaaat ataaaggcaa agatttattt acttgtgatg
       61 atactttagt gcgtgaaatc aagcttgaaa tttttatcaa tgatgaaaaa gtaggcgctt
      121 taatggcaac tcctgtagat gagcaagctt tggcggtggg gtatttgatg agtgaaaata
      181 tcattgctaa ggtgtctgat atagaaagca tagaaacaaa agatgatggt atgagtgtgc
      241 atattaaagc aaagattgat aaagaaaatt tagcaaagct taatgctgaa ggtgtagtta
      301 taagtggttg cggtagagca catactgcca atatcgatcc agaagctatt gaagcgagta
      361 aaattagttc tgatgcaaaa tttagcaaag atgaaatttt aaaacaaatg agtacttttt
      421 atactcaatg cgagctttac gagaaaacag gctgtgtgca tacggctaag ctttttgtag
      481 atgagaaaac tttttttata ggcgaagata tagcccaaca taataccata gataaagctt
      541 taggaaaagc acgtttagct ggggttgatt taagtcaatg ttttttaatg gttagtggaa
      601 ggctaagttc tgaaatggta gctaaagcag ttatgcataa aattccagtg cttgtttcac
      661 gcacggctcc tacttgttta ggggttatga tagcaagaaa atttgattta acgctttgtg
      721 gttttgctag agaaaataag atcaatattt atagtggaga atttagaatt catggataaa
      781 aatcaagaaa aagaaatcat ctcatacatg agagaattgt taaatagcaa tgaaaaatta
      841 gattgtggta cggcttttaa aattgcaaag aaatttaata taaatataga aaaaatcgga
      901 caattagccg atgaaaatca catgagaatt gataattgcg agttggggca atttggacat
      961 ttagattttg aaaaagcaaa gattgaagtg cttaaaaaaa tagaacctag tttagatgaa
     1021 aagcgtagaa ttttttgtaa agatgcaaga gatattgcta aagaaggttg tggacttaaa
     1081 agtatgcgtt cagctttaaa aacttataag gttgatgtaa agtattgtca acttggttgt
     1141 tttaaagaaa aaaaaggtaa gcaatttata gtaagaacaa aaacttggat tgaaaatgcg
     1201 gatggagatt tgctttttgg tcgaggaaaa acagaacttt tagaacttat cggacaaaca
     1261 ggtagtttat tacatgcttc taaacttatg gggattaatt ataaaaaagc ttggatgcat
     1321 ttacaaacct tacaaaaaaa ttctcaagaa attttagtta gcacaagaca aggacgctct
     1381 aaagaatcag gaacaaaact tactcctaga gctatggaat tgatggaaaa ttactctatt
     1441 ttgcaaaaag acatagaaga atacgctaat aaacgcttta aagaattgtt tttaaaa
//
LOCUS       DBBXRO010000192         1480 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.193, whole genome shotgun sequence.
ACCESSION   DBBXRO010000192 DBBXRO010000000
VERSION     DBBXRO010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1480
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.193"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..483)
                     /locus_tag="ACJFEZ_001815"
     CDS             complement(<1..483)
                     /locus_tag="ACJFEZ_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917898.1"
                     /translation="MIPSFIASFDVAVGRKRLRERKGYLKLSNTIAYGGLSVDALALY
                     IQLAKLSEKTIISEIYLREFIKVKNNQRMSLNRLRIAKKELIELRLLEIKKVRNGSLN
                     FYEWILKDENYQVKKHFNKSLSLLKSGNEKLSKTLKNNASSIDRKLTTENEKNQNSLY
                     I"
     gene            complement(480..857)
                     /locus_tag="ACJFEZ_001816"
     CDS             complement(480..857)
                     /locus_tag="ACJFEZ_001816"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917899.1"
                     /translation="MKLVFLIYIASILDDINRVFFTAGILTLACGIFSIILYYGSKFE
                     HNEEFANIGIKGMKIFIPISIITGSIAILTPSKQTAYLMAGAYIGNQVATSEFVNNRL
                     EKIIEIIDLNLDKQIKELQGFKK"
     gene            complement(854..1288)
                     /locus_tag="ACJFEZ_001817"
     CDS             complement(854..1288)
                     /locus_tag="ACJFEZ_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917900.1"
                     /translation="MKMIKINSSFIRPHTIKSFSVYAEQEFIVLKIFNGINYIQHFKI
                     FQNKELDYHYIFGAKQNSKTVMILDEIDNLMQKLAANTSLEVKRLLSKRKGSIFKNET
                     MFLDCELFNFLAKSEEKNNIELLVKEYHKEQRKIGFFKRFFL"
     gene            complement(1285..>1480)
                     /locus_tag="ACJFEZ_001818"
     CDS             complement(1285..>1480)
                     /locus_tag="ACJFEZ_001818"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917901.1"
                     /translation="FGGANSSWYAKLNGNRKVDIKTALKLKDEFNIPLEAWGNSEIFS
                     KTMKGVTNIPKRGRKRKDRE"
BASE COUNT          464 a          236 c          165 g          615 t
ORIGIN      
        1 tatatatagg gaattttgat ttttttcgtt ttcagtggtt aattttctgt cgattgatga
       61 agcattattt ttaagagttt tgcttagctt ttcattacca cttttaagca aagataaaga
      121 tttattaaaa tgttttttga cttgataatt ttcatctttt aaaatccatt cataaaaatt
      181 taaagatcca tttctaacct ttttaatttc taaaagccta agctcgatta attctttttt
      241 ggcaattctt aatctattta aactcattct ttgattattt ttaactttta taaactctct
      301 tagatagatc tcacttataa tcgttttttc actaagttta gctagttgta tatataatgc
      361 cagagcatca acactaagcc ctccataagc tatagtgttt gataatttca aatagccttt
      421 tctttctctc aatctttttc gcccgacagc cacatcaaag cttgctataa aacttggtat
      481 cattttttaa atccttgtaa ttctttgatt tgcttatcaa gattcaaatc tataatttct
      541 atgatttttt ctaatctatt atttacaaat tcactagtag caacttgatt tcctatataa
      601 gcaccagcca tcaaataagc agtttgtttg cttggagtaa gaattgcaat agatcctgtt
      661 attatgctaa taggaataaa gattttcatt ccttttattc ctatatttgc aaattcttca
      721 ttgtgttcaa atttgctacc atagtagaga ataattgaaa aaataccaca agcaagagtc
      781 aaaatgcctg cggtaaagaa tacgcgattg atatcatcaa gtattgatgc tatgtaaatc
      841 aaaaaaacta atttcataaa aaaaaccttt tgaaaaatcc tatttttctt tgctctttgt
      901 gatattcttt tacaagtagt tctatattat ttttttcttc gcttttcgct aaaaaattaa
      961 ataattcaca atctaaaaac attgtttcat ttttaaaaat agaacccttt ctttttgata
     1021 aaagtctttt aacctcaagg ctggtatttg ctgcgagttt ttgcattaag ttatctattt
     1081 catctaatat cataactgtt tttgaatttt gttttgctcc aaaaatataa tgataatcca
     1141 actctttgtt ttgaaatatt ttaaaatgct gtatataatt tattccatta aaaattttaa
     1201 gaacaataaa ttcttgctca gcataaacac taaaactttt aattgtatgt ggtctaataa
     1261 aagaagagtt gattttaatc attttcattc tctatccttt ctttttcttc cacgcttagg
     1321 tatgtttgta actcccttca tggttttact aaaaatttca gaatttcccc atgcttccaa
     1381 tggaatatta aattcatctt ttaattttaa tgcggttttt atatcaactt tcctattgcc
     1441 gttaagtttt gcataccaag agctattggc tcctccaaat
//
LOCUS       DBBXRO010000193         1406 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.194, whole genome shotgun sequence.
ACCESSION   DBBXRO010000193 DBBXRO010000000
VERSION     DBBXRO010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1406
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.194"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>1406)
                     /gene="dcuC"
                     /locus_tag="ACJFEZ_001819"
     CDS             complement(<1..>1406)
                     /gene="dcuC"
                     /locus_tag="ACJFEZ_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HGG0917902.1"
                     /translation="TLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKA
                     PSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLAN
                     KPLGKIKNKYLILSGTFIVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCV
                     LSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVMVIAILIPFYFAWI
                     DKRDKEKGVLNDEVEIPPIIDPKCPTFYILFPWLPVVFLFIAYFFTIKLDVVTANFLS
                     ISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNI
                     LANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLG
                     VAPITFVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVL
                     VAFYLAQTNPLPKEQNTT"
BASE COUNT          531 a          249 c          226 g          400 t
ORIGIN      
        1 tgtagtgttt tgttcttttg gcaaaggatt ggtttgtgct agataaaagg ctacaagcac
       61 atttacaagc atagcgataa gtaaaagagg agtggttcgt tttataatat ccattggagc
      121 tacttttgca aatccagcta aagctatgat tccgcctgct attggtgaag ctgcacgacc
      181 taaacaagat gcaatttcta taggtaaaac aaaagtgata ggggcaacgc ctaattttgt
      241 agctatatca ggagctaatt tcccaaaagc attaaaagca gcaatcccac ttcccataat
      301 cactgtagca aaataaacta aaaagcttaa aatagctata ctcaaaagaa ttccaaacca
      361 tgcaaaattt cctgttccaa gatttgaaac cgcgttagca aggatattaa ctccaccaag
      421 tgctttaatg ccttcagcaa atactccagc ggcgatgatt atgcttacga ctgagataaa
      481 aatttcagcc atagctttta aaatcaccat catatcttcg cctaattttc tagcatttct
      541 gtgtcttgca aattcaacaa gaaaaactaa agaaatgctt aaaaaatttg ctgttacaac
      601 atcaagcttg atagtaaaaa aatatgctat aaataaaaat acgacaggca gccaaggaaa
      661 gagtatataa aaagtaggac atttaggatc aatgattggt ggaatttcaa cttcatcatt
      721 taaaacacct ttttctttat ctcttttatc aatccaagca aagtaaaaag gtattaagat
      781 agcaataacc atcacataag caatcacgct ataaatttga taatttaaaa aaagccccac
      841 gacattatcg ctttgtccta ccatatctgc catattgatt gaatttccat cttttggacc
      901 ataatcaagc gcaatcaaag aaagcacaca tacagctgta ataggacgga ttttaagtga
      961 gattaaaaca ggataaatac atgctaataa aagcaaaaga agtccagcat agctagaaat
     1021 aacaattttt aaggccattc caacgataaa agttccgctt aaaatcaaat atttattttt
     1081 gatttttcct aaaggtttgt ttgctaaaaa agcgagttta gccgaagcat tgatatgttt
     1141 catataagca gcaaaacctg ccacactcat gataataagt cctactccag aaagctgact
     1201 tttaaaagtc gctgtgataa aagcatagct atcaagtaaa acattcaaaa agcttgcatg
     1261 ttctctgctc ggggcttttg gtataggtgt tcctgtgatg taaaaagcaa aaataagcaa
     1321 gataatacct gaaagaaaaa atacaaaaat aggattgtat tttttaagta tataataagc
     1381 aacgacaatt accgctaaaa gtgtag
//
LOCUS       DBBXRO010000194         1374 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.195, whole genome shotgun sequence.
ACCESSION   DBBXRO010000194 DBBXRO010000000
VERSION     DBBXRO010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1374
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.195"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(194..1165)
                     /locus_tag="ACJFEZ_001820"
     CDS             complement(194..1165)
                     /locus_tag="ACJFEZ_001820"
                     /EC_number="1.11.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015087275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HGG0917903.1"
                     /translation="MKKYISSCLAICCLSSAIYANDVKYNAQKIADIFYQLNADPKNP
                     KVKVNHAKGFCAMGTFEPAQSINKEIDVPLLTYKSLPIQVRYSLGGAFKDDKSKTRGM
                     AIRITDPQDSASWTMVMLNTEINFAKNPKEFGQFFEMRLPVNGKVDQEKISKMMQEVD
                     SYRNFAAYTDKIGISKSVANTPFFSIHTFYFKQADGENYLPARWKLVPSEGVAYLNEA
                     QMKSASSDFLKEDFKDRVKTNKPVEYKMYLVYANKNDIINETTALWSGKHKESLVGTF
                     KVNALSDEDCNFDVYFPSDVPQGVNPPQDPLFDVRNEAYAITFGMRQ"
BASE COUNT          474 a          234 c          145 g          521 t
ORIGIN      
        1 tatttttata tttttactct aaaatcacat ttttatattt caaaaatgct aaattatcac
       61 ttgtatttta tatctcataa aacctatatt tttcataaac ataaaaaaat gaatccccaa
      121 agcttaatct taagacaagc tttggcaaaa cagtataagt tcttaaaaga ctttaaccct
      181 tgaaagtaaa gatttattga cgcatgccaa aagtgatagc ataagcctcg tttcttacat
      241 cgaacaaagg atcttgtggc ggatttactc cttgaggtac atctgaaggg aaatatacat
      301 caaaattaca atcttcatca ctcaaagcat taactttaaa agttccaact aagctttctt
      361 tatgcttacc actccataaa gctgtcgttt cattaataat atcattttta tttgcatata
      421 ctaaatacat tttatattct actggcttat tagtctttac gcgatctttg aaatcttctt
      481 ttaaaaaatc actacttgcg cttttcattt gcgcctcatt taaatacgcc acaccttcac
      541 ttggaactaa tttccatctc gctggcaaat aattttctcc atctgcttgt ttaaaataaa
      601 aagtatgaat actaaaaaat ggagtatttg ctacactttt actaatacca attttatcag
      661 tatatgcagc aaaatttcta taggaatcaa cctcttgcat cattttactt attttttctt
      721 gatcaacttt accatttaca ggaagtctca tttcaaaaaa ctgaccaaat tctttaggat
      781 tttttgcaaa atttatttct gtatttaaca taaccatagt ccaagaagca gaatcttgag
      841 gatcagtaat tctaatagcc atgcctcttg ttttgctttt atcatcttta aaagctccac
      901 ctaaagaata ccttacttga attggtaaac ttttgtatgt caataaaggc acatcaattt
      961 ctttattaat agattgtgct ggctcaaaag ttcccatagc acaaaaacct tttgcatgat
     1021 taacttttac tttgggattt ttaggatccg cattgagttg ataaaaaata tccgctattt
     1081 tttgtgcatt atattttaca tcatttgcat aaatagcact acttaaacaa caaatagcca
     1141 aacagctact aatatatttt ttcattataa actcctagtt tcaaaatttt taagtaggca
     1201 ttgtaatatt taactataaa cgataatttg cattattaat gaaaattgtt ataaattcaa
     1261 atatccttat tatgctaata ttttaagttt gcatttttaa aatatacaac atctaaatag
     1321 taactataga aattttaaaa ttaactttta tatcttaact ttattatttc aagt
//
LOCUS       DBBXRO010000195         1361 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.196, whole genome shotgun sequence.
ACCESSION   DBBXRO010000195 DBBXRO010000000
VERSION     DBBXRO010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1361
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.196"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            48..1079
                     /locus_tag="ACJFEZ_001821"
     CDS             48..1079
                     /locus_tag="ACJFEZ_001821"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004067 - asparaginase activity [Evidence
                     IEA];
                     GO_process: GO:0006528 - asparagine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HGG0917904.1"
                     /translation="MCVWVFLSIGVCMAEAKPKIAILATGGTIAGSIDSAVATTGYTA
                     GVVGVDVLIKAVPQIQDLANISGEQVANIDSSNMRDEIWLKLAKKINKLFDEGVDGVV
                     ITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALAADKEAK
                     NKGVMVAMNDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNISKAHTKN
                     SPFDVSKLTSLPKVDILYTYSNDGSAIAAKALFDNGTKGIVVAGSGAGSIHEDQKNTL
                     KELIKQGLDVVVSSRVAAGRVAVSDADKKLGFISAEDLNPQKARVLLMLALTKTNDPK
                     KIQEYFLKY"
BASE COUNT          457 a          202 c          264 g          438 t
ORIGIN      
        1 tgaaacttaa ttttaataaa taagggggct ttgtgaaaaa gttacttttg tgtgtatggg
       61 tatttttatc tataggagta tgtatggcag aagccaaacc aaaaattgct attttggcaa
      121 cgggcggaac tatagcaggt tctattgata gtgctgtggc tactacaggc tatacagcag
      181 gtgttgtggg tgtagatgtt ttaatcaaag cagtgccaca aattcaagat ttggctaata
      241 tcagcgggga acaagtagca aatattgaca gctctaatat gcgtgatgaa atttggttaa
      301 agcttgctaa aaaaatcaat aagctttttg atgagggtgt agatggtgta gtcattactc
      361 acggtactga taccatggaa gaaaccgctt attttttaaa tttgaccatt aaaagtgata
      421 agcctgtagt tttagttggt gctatgcgtc catcaactgc tataagtgcc gatggcccaa
      481 aaaatcttta caatgctgta gcattagctg ccgataaaga agctaaaaat aaaggcgtta
      541 tggtggctat gaatgataaa attttaagtg ctaggggcgt ggtaaaaacc catagtttaa
      601 atgttgatgc tttttcttct cctgattttg gagatttggg ctatatagta gatggaaaag
      661 ttttcttcta taataacata agcaaagcac acacaaaaaa tagccctttt gatgtaagta
      721 aactcacaag cttgccaaag gtagatatac tttatactta ctcaaatgat ggtagcgcta
      781 ttgctgcaaa agctttattt gacaatggaa ccaaaggtat tgttgtagca ggaagtggcg
      841 caggaagcat acatgaagat caaaaaaata ctttaaaaga actcatcaaa caagggcttg
      901 atgttgttgt aagttcaagg gttgcagcag gacgcgttgc ggtgagtgat gcggataaga
      961 aattgggttt tatcagtgct gaagatttaa atccacaaaa agctagagtt cttttgatgc
     1021 tagctcttac aaaaacaaat gatcctaaaa aaatccaaga atacttttta aaatactgaa
     1081 tttaggcatt tctaaaagtt tagagaggat atttatcttc tctaaattca gtattttcat
     1141 ccttttaacc cccaaccacc caaaaataag gctaaatttc tagccttatt taatcctcct
     1201 ttaagcttaa ttggttatac tttcatttcc tttttcagaa aaggacttaa gatctttaaa
     1261 ttatagtcta aagttaacta aagttaaatt aagattttat aaaccctatg tttctagttt
     1321 taaattaatc tttaatccta gctaaagcaa tctaagttta t
//
LOCUS       DBBXRO010000196         1357 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.197, whole genome shotgun sequence.
ACCESSION   DBBXRO010000196 DBBXRO010000000
VERSION     DBBXRO010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.197"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            430..846
                     /locus_tag="ACJFEZ_001822"
     CDS             430..846
                     /locus_tag="ACJFEZ_001822"
                     /inference="COORDINATES: protein motif:HMM:NF019313.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase fold protein"
                     /protein_id="HGG0917905.1"
                     /translation="MENNQNKQEKLESVNIDKPIEKKEEDLFSRNSVAEQLNTIIKNY
                     KEEDSITFGIIGDWGSGKTSFVNMILEDFKDDENFIIVKFNPWNISTRKKLISDFFTT
                     LAKEIRKASFPKFKIKNLKKYILMQNLNFYLKYLIN"
     gene            882..>1357
                     /locus_tag="ACJFEZ_001823"
     CDS             882..>1357
                     /locus_tag="ACJFEZ_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase fold protein"
                     /protein_id="HGG0917906.1"
                     /translation="MIADPVASVAMSRASSIINNFNKLLSAEKKGLDEIKNEINTALL
                     NIDIKIIVVIDDLDRLADTDIQEIFQLVRSIADFKNTIYILSYDEEIVSKALDKIQKD
                     KGGKYIEKIVQVPIKLSKVSQENLKDIFIKKLKTIHIKHEALDKDEFIKKIKENNFA"
BASE COUNT          574 a          161 c          167 g          455 t
ORIGIN      
        1 ccatttgtac cataagctac tataaatatc agacttataa aatatagata aaataggcat
       61 ttgtagctat ataaagccta aattaaagtt ttttccatta aaatccattt tgaaactttt
      121 ttcctaactt ttctcctaac tttttatttt ttattccaaa aagttaggaa aaatcgatac
      181 aaagaaccta ttttaaacta caaatgatat ttttcaaaaa acatccaact atctctagat
      241 gattttagta aaaacctaaa caatagatct taaaaaatta tagatagctt tttatctttc
      301 cttatttaaa gcaaaaaacc aaaaatattt tttaccctct caagagtgat tagaatacct
      361 ttggttcttt ttatcataaa acatagttaa aattatatat aatctcaaaa accaaaagga
      421 gcttatttta tggaaaataa tcaaaacaaa caagaaaaat tagaaagcgt taatatagac
      481 aaacctatag agaaaaaaga ggaggatttg ttcagtagaa attcagtagc agaacaacta
      541 aatacaatta ttaaaaatta taaagaagaa gatagtatta cttttggaat tataggtgat
      601 tggggtagtg gaaagacctc tttcgttaat atgattttgg aggattttaa agatgatgaa
      661 aatttcatta tagtgaaatt taatccttgg aatatctcta ctagaaaaaa acttatcagc
      721 gattttttta caacgcttgc caaagaaatt cgtaaagctt catttccaaa atttaaaatt
      781 aaaaatttaa aaaaatatat tctcatgcaa aatttaaatt tttatctgaa gtacctaata
      841 aactagaaga tttatcattg ttatttaaaa tgtcatctta tatgattgca gatccagttg
      901 cttcagtggc aatgtctcga gcttcaagta ttattaataa ttttaacaaa ctattaagtg
      961 cagagaaaaa gggtttagat gaaatcaaaa atgaaattaa caccgcttta ttaaatatag
     1021 acataaaaat aatcgtagtc attgatgatc ttgatagatt ggccgataca gatatacaag
     1081 aaatttttca acttgtaaga tctatagctg attttaaaaa taccatatat attctttctt
     1141 atgatgaaga gattgtttct aaagctttag ataaaattca aaaagataaa ggtggtaaat
     1201 atatagaaaa aatagttcaa gttcctatta aattgtctaa agttagtcaa gaaaacttaa
     1261 aagatatatt tataaaaaaa ctaaaaacaa ttcatataaa acatgaagca ttggataaag
     1321 atgagtttat taaaaaaata aaagaaaata attttgc
//
LOCUS       DBBXRO010000197         1346 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.198, whole genome shotgun sequence.
ACCESSION   DBBXRO010000197 DBBXRO010000000
VERSION     DBBXRO010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.198"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            122..>1346
                     /locus_tag="ACJFEZ_001824"
     CDS             122..>1346
                     /locus_tag="ACJFEZ_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HGG0917907.1"
                     /translation="MTLLCLFRFNVLLSLLISALVAGIFSHIEIMETMSILIDGMKGN
                     LKTALSYILLGAIAAAISRTNLTAYLIKVVSRFISHKKYLLLLSIALISCFSQNLIPI
                     HVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLPIGFGLNFQDLLRENLE
                     KNGVNVNLADVTNAMYYAAICMVLGLFLALFVFYRKPREYQEIEIQKMDFDNIKMGRK
                     EWGVLVGLILTLVLQIFTMNLPLSGLLGFISMVILGGVEYKSVNDIFDDGLKLMGFIA
                     FVMLVAAGYGEVLKQSGAVNELVNSVVPWMQENKFLAVFLMLLIGLIITMGIGTSFGT
                     IPIIATLFCPICLELGFSAALIIFILGVAGALGDAGSPASETTMGTSVGLSVDKQHDH
                     IKDTCIPTFIFYNGPL"
BASE COUNT          381 a          178 c          257 g          530 t
ORIGIN      
        1 taattcattg ataattttta tctcatttta aaaaattttt ctttagaatt aagcttttat
       61 aaattcacaa ggaaaaattt tgaccctgct tacaaatcct atcatcatca gtgtagtttt
      121 gatgacttta ctttgtttat ttcgttttaa tgtacttttg agtcttttga tttctgcttt
      181 agttgctgga attttttctc atattgagat tatggaaact atgagtattt taatcgacgg
      241 aatgaaggga aatttaaaaa ccgctttaag ttatatactt ttaggtgcta ttgctgctgc
      301 gatttcaagg acaaatttaa cagcttattt gattaaggta gtcagtcgtt ttatctctca
      361 taaaaaatat cttttgcttt tgtccatagc tttgatttct tgtttttcgc agaatttaat
      421 tcctattcat gtggcgttta ttcctttgct aatcccacca cttctaagtc tttttaataa
      481 attaaaaatc gatcgtaggg ctgttgcttg tgctttaacc tttggactta cgacacctta
      541 tatggttttg cctataggtt ttggacttaa cttccaagat cttttaagag aaaatttgga
      601 aaaaaatggg gttaatgtca acttagcaga tgtaacaaat gcgatgtatt atgctgctat
      661 ttgtatggtg ttaggacttt ttttagcgct ttttgtattt tatagaaaac caagagaata
      721 tcaagaaata gaaattcaaa aaatggattt tgataatatc aaaatgggac gcaaagaatg
      781 gggcgtttta gtagggctta ttttgacttt ggttttacaa atttttacga tgaatttacc
      841 tttatcaggg cttttgggct ttatttctat ggtgattttg ggcggagttg aatataaaag
      901 tgtcaatgat atttttgatg atggacttaa attaatgggc tttatcgctt ttgttatgct
      961 tgtagcagcg ggttatggag aagttttaaa acaaagcggt gctgtaaatg agcttgtaaa
     1021 ttccgtagtg ccttggatgc aagaaaataa atttttagcg gtatttttaa tgcttttaat
     1081 aggtcttatt attaccatgg gtataggtac ttcttttggg actattccta tcatagctac
     1141 acttttttgt cctatttgtt tagaacttgg ttttagcgca gctcttatta tatttatctt
     1201 aggagtagca ggggccttag gagatgcagg aagtccagca agtgaaacga cgatgggaac
     1261 gagtgtggga ttaagtgtag ataagcaaca cgatcatata aaagatactt gtattcctac
     1321 ttttattttt tataatgggc ctttgc
//
LOCUS       DBBXRO010000198         1312 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.199, whole genome shotgun sequence.
ACCESSION   DBBXRO010000198 DBBXRO010000000
VERSION     DBBXRO010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1312
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.199"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(96..172)
                     /locus_tag="ACJFEZ_001825"
     tRNA            complement(96..172)
                     /locus_tag="ACJFEZ_001825"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(136..138),aa:Ile,seq:cat)
     gene            complement(223..>1312)
                     /locus_tag="ACJFEZ_001826"
     CDS             complement(223..>1312)
                     /locus_tag="ACJFEZ_001826"
                     /EC_number="2.4.99.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HGG0917908.1"
                     /translation="DRRILTHFDYMQPILFVPIILISFFLIFEANAFLAEKQFVYACV
                     GIAAFSVFFLLPIRKLMWLIPIAYWVNIFLLLSTDIFGVEKLGAKRWLEIPFTHFTIQ
                     PSEIFKPSFILMLAYLIYQDPPPKNGYKLKQFLKLSFFIILPFLLIAQEPDLGSAMVL
                     LIVGFGVLFIMGVHYKIWLSIIIAIGISSPIIYTHLLKPYQKQRIHDFISEKPSYQVA
                     QSMIAIGNGGLIGKSQDEATQTHFNFLPISTSDFIFAYLIERFGFLGGFVLILLYTLL
                     IFHLLSLNQKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFSYGGS
                     SFTIFMIFFGILQHLITFRYFWVDNKNK"
BASE COUNT          508 a          202 c          220 g          382 t
ORIGIN      
        1 gagtgttaaa taagtaaagt atttgtttaa aatattattt gttaattgaa taagtttgat
       61 ttgtttttgg attatatatg aaataattaa agtagtggtg gatttagcag gactcgaacc
      121 tgcgaccaac cggttatgag ccggttgctc taaccaactg agctataaat ccgccttaat
      181 ttttaaagat aaaattatac cttatttttg cttaaaatta ttttatttat ttttattgtc
      241 tacccaaaag tatctaaagg taatcaaatg ctgtaaaatt ccaaagaaaa tcataaaaat
      301 cgtaaaagaa cttccaccat agctaaaaaa aggcaaaggg ataccgacaa caggcgcaaa
      361 tcctatagtc atcgaaatat ttaccgcagc ataaataaaa ataaacaatg ctacgcagtt
      421 tatggcaacc ctagcaaaat aatcatcctt aagcttttga tttaagctta gtaaatgaaa
      481 gatgagtaga gtataaagta aaatcaatac aaatcccccc aaaaagccaa atctttctat
      541 aagatatgca aagataaaat cacttgtaga gataggcaaa aagttaaaat gcgtttgtgt
      601 agcttcatct tgagattttc ctataaggcc gccattgcct atggctatca tggattgtgc
      661 gacttgatag cttggttttt cggagataaa atcatgaatt ctttgttttt ggtagggctt
      721 taacaaatgc gtataaatga tgggagagct tataccgatg gcgatgatga tactaagcca
      781 aattttataa tgcacaccca tgataaaaag cacgccaaaa cctacgatta aaagcaccat
      841 agcacttcct aaatcaggct cttgagcgat caataaaaaa ggcaaaatga taaaaaaact
      901 aagctttaga aattgtttta gtttatagcc atttttaggc ggtggatctt gatagatgag
      961 ataagcaagc attaaaataa aactaggttt aaaaatttca gagggctgga tggtaaaatg
     1021 agtaaaagga atttcaagcc atcttttagc acccaacttt tcaacaccaa aaatatctgt
     1081 acttaaaagc aaaaagatat tgacccaata agctatgggt ataagccaca tcagtttgcg
     1141 aataggcaat aaaaagaata cgctaaatgc ggcaattcct acacaggcat agacaaattg
     1201 tttttcggct aaaaaagcat tggcttcaaa gattaaaaaa aacgaaatta aaataatagg
     1261 tacaaacaaa ataggttgca tataatcaaa atgtgttaaa attcttctat ca
//
LOCUS       DBBXRO010000199         1303 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.200, whole genome shotgun sequence.
ACCESSION   DBBXRO010000199 DBBXRO010000000
VERSION     DBBXRO010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.200"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            55..792
                     /locus_tag="ACJFEZ_001827"
     CDS             55..792
                     /locus_tag="ACJFEZ_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HGG0917909.1"
                     /translation="MQENHNFISFVLLDEAKFDFLKLKKILEDDFDIWIADENFTQDG
                     VIFSFKNMIVTLNLIKNPIPNNEAEYYANFNFMWKDALEQTQKHKAHLLVSVLSQSES
                     KLDQAKLFTQISSACLQDEHTLGFYTGGVVLEPKFYIENAKMLEDNRLPIYNWIYVSA
                     YPGDNGNNAYTYGLRNFDKLELEVCDANIEEKELFFTLYDIILHILTYDLSLKDGDTL
                     KFEDGRILSFKKSQGIGVENESLKIIF"
     gene            861..1277
                     /locus_tag="ACJFEZ_001828"
     CDS             861..1277
                     /locus_tag="ACJFEZ_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002833266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HGG0917910.1"
                     /translation="MKLKLGLAALLGATVLFARDIIVPASELPRNAQDFISKNFKTAQ
                     IALVKKDIDSYDVTLNDGTEIDFIITGEWKDVDGKYKALPNSILPNIMPKISASSNAQ
                     IIEVSREINGYKFELSNQLKIYTDAQGNILGQKFDY"
BASE COUNT          485 a          160 c          218 g          440 t
ORIGIN      
        1 ggcttaaaaa tttaggttat aattttttaa atactttaac tcttaaggaa aagcatgcaa
       61 gaaaatcata attttatttc ttttgttctt cttgatgaag ccaagtttga ttttttgaaa
      121 ttgaaaaaga tacttgaaga tgattttgat atatggattg ctgatgaaaa ttttactcaa
      181 gatggagtaa ttttttcttt taaaaatatg atcgttactt taaatttgat taaaaatcct
      241 atacccaaca acgaagcaga atattatgct aattttaatt ttatgtggaa agatgcttta
      301 gagcaaaccc aaaaacataa agcacatctt cttgtatccg ttttaagtca gagtgaatca
      361 aagctagatc aagctaaact ttttactcaa atatcatctg cgtgtttgca agatgagcat
      421 actttgggat tttatacagg aggagttgtt ttagagccta agttttatat agaaaatgca
      481 aaaatgctag aagataatcg tttgcctatt tataattgga tttatgtaag cgcttatcca
      541 ggtgataatg gcaataatgc ctacacctat ggtcttagaa atttcgataa attagagctt
      601 gaggtttgtg atgcaaatat agaagaaaaa gagcttttct tcactttgta tgacattatt
      661 ttgcatattt taacttatga tctaagttta aaagatggtg atactttaaa atttgaagat
      721 ggtagaatac tttcttttaa gaaaagtcaa ggcataggtg ttgaaaatga gagtttaaaa
      781 attatttttt agtttcacat tcacttcaca aagataagtt aaacttctct caaccaaaac
      841 acaaacaaaa aggagaaaaa atgaaattaa aattaggttt agcggcttta ttgggtgcta
      901 cggtgctttt tgctagagat ataattgttc ctgcgagtga acttccaaga aatgcacaag
      961 attttatatc taagaatttt aaaactgcac aaattgcttt agtaaaaaaa gatatagatt
     1021 cttatgatgt gactttaaat gatggaacag aaattgactt tattatcact ggagagtgga
     1081 aagatgtaga tggaaaatac aaagctctgc caaatagcat tttgccaaat attatgccaa
     1141 aaatcagtgc ttcatcaaac gctcaaatca tagaagtaag cagagaaatc aacggatata
     1201 aatttgaatt aagcaatcaa ttaaaaattt atactgatgc acagggtaat atcttaggac
     1261 aaaaatttga ttattaattc taaaagcatg taaatttgga gac
//
LOCUS       DBBXRO010000200         1255 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.201, whole genome shotgun sequence.
ACCESSION   DBBXRO010000200 DBBXRO010000000
VERSION     DBBXRO010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1255
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.201"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            13..1245
                     /locus_tag="ACJFEZ_001829"
     CDS             13..1245
                     /locus_tag="ACJFEZ_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HGG0917911.1"
                     /translation="MINLLQGWEWKSLGEIFNIERGGSPRPIKEFLTDKEDGINWIKI
                     GDIKNQKYLYKTEEKIIQEGLKKSKLVIEGDLLVSNSMSFGKPVIVKLQKGAIHDGWL
                     LLKEKINLNKEYFYYLFSSNFMYNFLSYQASGSTVKNLNIDKLKQIEIPLPPLKEQER
                     IVGILDESFAKIDESIKILEQDLLNLDELMQSALQKAFNPLKDNAKENYKLPQGWEWK
                     NLGEIANTSSGGTPSRNKKEYWENGNIKWLKSGELNDGYIDFIEENITEEAIKNSSAK
                     IFQKGTLLIAMYGATAGKLGILNLDSTTNQAICAFLHKDKNIKFLEKFLFYFLFFLRD
                     KIIKDSFGGAQPNINQTYIKNLQIPLPPLKEQEQIASHLDELSSHVKNLKQNYQAQIK
                     NLQELKNSLLDKAFKGNL"
BASE COUNT          520 a          166 c          206 g          363 t
ORIGIN      
        1 ttgcaaaata aaatgataaa tttactgcag ggttgggaat ggaaaagctt aggagaaatt
       61 tttaatattg aaagaggggg ctctcctaga cctattaaag aatttttaac agataaagaa
      121 gatggtataa attggattaa aatcggcgat ataaaaaatc aaaaatatct ctataaaaca
      181 gaagaaaaaa tcatacaaga aggacttaaa aaaagtaaat tagtcattga gggagattta
      241 ttggtttcaa attcaatgag ttttggcaaa cctgttattg taaaattaca aaaaggtgca
      301 attcacgatg gttggctatt gttaaaagaa aaaattaatc taaataagga atatttttac
      361 tatttatttt ctagtaattt tatgtataac tttttatcct accaagcctc tggttctact
      421 gtaaaaaatt taaatataga taaactcaaa caaattgaaa tcccactacc cccactcaaa
      481 gagcaagaaa ggatagtggg aattttagat gagagttttg caaagataga tgagagtata
      541 aaaatcttag agcaggattt gctaaattta gatgagttaa tgcaaagtgc cttgcaaaaa
      601 gctttcaatc ccttaaaaga caatgccaaa gaaaactata aactcccaca aggttgggaa
      661 tggaaaaact taggggaaat tgcaaatact agcagtggcg gaaccccatc aagaaataaa
      721 aaagaatatt gggaaaatgg aaatatcaaa tggctaaaga gtggggaatt aaatgatgga
      781 tatattgatt ttatagaaga aaatattaca gaagaagcta ttaaaaactc gtcagctaag
      841 atatttcaaa aagggactct acttattgct atgtatggag caacagctgg aaaactagga
      901 attctaaatt tagattccac tacaaatcaa gcaatttgtg catttttaca taaggataaa
      961 aatattaaat tcttggaaaa atttcttttt tattttctat tttttctaag agataaaatc
     1021 atcaaagatt ctttcggtgg agctcaacct aatataaatc aaacctatat aaaaaattta
     1081 caaatccccc tacccccact caaagagcaa gagcaaatcg cttcgcattt agatgagctt
     1141 tcttctcatg taaaaaattt aaagcaaaac tatcaagcac agataaaaaa cttgcaagag
     1201 cttaaaaatt cattgctaga taaggctttt aaaggaaatt tataaatgtt aaaaa
//
LOCUS       DBBXRO010000201         1253 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.202, whole genome shotgun sequence.
ACCESSION   DBBXRO010000201 DBBXRO010000000
VERSION     DBBXRO010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.202"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..770)
                     /locus_tag="ACJFEZ_001830"
     CDS             complement(<1..770)
                     /locus_tag="ACJFEZ_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917912.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRH
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDSAGEFNKILSLNSTPK"
     gene            complement(784..>1253)
                     /locus_tag="ACJFEZ_001831"
     CDS             complement(784..>1253)
                     /locus_tag="ACJFEZ_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002911952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917913.1"
                     /translation="TYLKRLSDNEVIAFAKPDWNLELTLFQDSNGDQYYWNREGLVRF
                     GGMCGIDTTNCLVNGKHTYTNQQRLWETMSIVGDDPYRNFLGYTVKRNIGISNLGKRF
                     VYFSYGVAVINEQSGSWYRVKSSPVLNNYRVVKEISSNYKDFLERYLGGYSIK"
BASE COUNT          381 a          218 c          158 g          496 t
ORIGIN      
        1 ctttttggtg tagaatttaa agaaaggatt ttattaaatt cccctgcact atcatcacta
       61 aatttcatac caaaaagaag ttctaattct ttactagtgc taaatttacc ttctaatagt
      121 ttttttacaa gttcgtttct tgtgctatca tctttgtaag tttctttgtt tttactttcg
      181 ccttgaatgg ctttgaaggg tttttcactt tgttgagtga taatttcatc atcactagaa
      241 agcaacattt tatcacccat agccatttcg tattctttca caaattcatc gtgtctttgc
      301 ttaaaatcta tgtatttagt tttaaactca tttaagctta aatctttact tataagtgcg
      361 tcaaattctt tataaaattc atcggctttt ttgatgatgt cgtagcccaa atgaaacatc
      421 ttagaataag aaacaaaaaa acctaacatc attttctcag tagttgggtc ccattttgta
      481 taagcaggat taaaatcttt taaaggggat ttttctattt tattggggtc ttttaaagca
      541 tttgacttca taaagttgtt aaattcttgc atatcttttt tgctaatact ttcatcaagt
      601 ccgaatattt taggattata ctcaaatttt tttccacgat aaggcaaagc accttctcct
      661 gttataacgg ctactccgtg tttgttgatt ttaaaatcaa tatttttatc ttgtttaaaa
      721 tttgaagtgt tataatcata gtttaaattt gagtttagac tatttatcat tagtttttcc
      781 tctttacttg atagaatacc caccaagata tctttctaaa aagtctttat agtttgaact
      841 gatttcctta actactctgt aattattcaa aacaggactt gattttactc tataccaaga
      901 acctgattgt tcgttgatta cagccactcc ataagaaaaa tacacaaatc ttttccctaa
      961 attagaaata ccaatatttc ttttcacagt atatccaaga aagttacgat aagggtcatc
     1021 gcccactata ctcatagttt cccaaagtct ttgttgattt gtgtatgtat gttttccatt
     1081 aactaagcaa tttgtggtat ctataccgca cattccacca aatcgaacaa gtccttctct
     1141 attccaataa tattgatctc cgttactatc ttgaaataaa gttaattcca aattccaatc
     1201 aggtttggca aaggctataa cttcattatc actaagtcgt tttaaatagg tta
//
LOCUS       DBBXRO010000202         1246 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.203, whole genome shotgun sequence.
ACCESSION   DBBXRO010000202 DBBXRO010000000
VERSION     DBBXRO010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.203"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..373)
                     /locus_tag="ACJFEZ_001832"
     CDS             complement(<1..373)
                     /locus_tag="ACJFEZ_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HGG0917914.1"
                     /translation="MKKVFLDTNIFIDFFEETRENNQQAKQLIYFLISNDIKIIFSED
                     MISTVAYILKKENLGKFTHFIKTISLEKEFEIVSFGVSVINMACDYYDKYRGDFEDYL
                     QYFCAEKEGCCAIYTMDKNFPN"
     gene            complement(370..>1246)
                     /locus_tag="ACJFEZ_001833"
     CDS             complement(370..>1246)
                     /locus_tag="ACJFEZ_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917915.1"
                     /translation="NKNNKQQVVYRKDNLSTDCITGEVIERNQIIVRKVQTRESFIKL
                     FTENIHYIINLEPQEKTLFFTLLSSVDYKNVVRFDKSMKQNIILDKVLSRAGMYRALN
                     GLIEKKVIFKIDRDFVKSYAGVGSDDCYLFNPNLVGRGSWNDLKNLRHTITREWDFEN
                     LEVRENLEIEEEYLGLDEIKNNQKQYQVKEINQEHDETTKVKNTEIVIEEKNNSANNQ
                     YSFDKKEEPSINKKVLISNDTQPSLFDENQKEQEARLFIEKFGGMFSGAYHPTKSAKE
                     LKREKLDQDLKEGKI"
BASE COUNT          403 a          189 c          119 g          535 t
ORIGIN      
        1 aatttggaaa atttttatcc atagtataaa ttgcacagca accttctttt tcagcacaaa
       61 aatattgcaa atagtcttca aagtctcctc gatatttatc ataataatca caagccatat
      121 taatgacact tacaccaaaa gaaacgattt caaattcttt ttctaatgaa atggttttta
      181 taaaatgagt aaatttacct aaattttctt ttttaagaat gtaggctaca gtagaaatca
      241 tatcttcaga aaaaattatt tttatatcat ttgatattaa aaaataaatt agttgcttag
      301 cttgttgatt attttctctt gtttcttcaa agaaatcaat aaagatattt gtatctaaaa
      361 aaaccttttt catattttac cttcttttaa atcttgatct agtttttctc tttttagctc
      421 tttggcggat tttgtagggt gatatgcacc gctaaacatt ccaccaaatt tttctataaa
      481 tagtctagct tcttgttctt tttgattttc atcgaataaa gaaggttgtg tatcattaga
      541 gattaagact tttttattta tgctcggctc ttctttttta tcgaagctat attgattatt
      601 tgcagagtta tttttttctt caataacaat ttctgtattt tttactttag tcgtttcatc
      661 atgctcttga tttatttctt ttacttgata ttgcttttga ttgtttttta tttcatcaag
      721 acctagatat tcttcttcta tttctaaatt ttctctaact tctaaatttt caaaatccca
      781 ttctctagta atagtatgtc ttaaattttt taaatcattc caagatccac gtcctactaa
      841 atttggatta aataaataac aatcatcact accaacacca gcatacgatt taacaaaatc
      901 tcgatctatt ttaaaaatta ctttcttttc tattaatcca tttaaagctc tatacattcc
      961 agctctactt aaaactttat ctaaaataat attttgtttc atagatttat caaatcttac
     1021 aacattttta taatctactg aagaaagcaa tgtaaaaaat aaagtttttt cttgaggttc
     1081 taaattaata atataatgaa tattttcagt aaaaagtttg ataaaacttt ctcttgtttg
     1141 aacttttcta acaataattt gatttctttc tataacttct ccagtaatac aatcagtaga
     1201 tagattatct tttctataaa ctacttgctg tttgttattt ttatta
//
LOCUS       DBBXRO010000203         1226 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.204, whole genome shotgun sequence.
ACCESSION   DBBXRO010000203 DBBXRO010000000
VERSION     DBBXRO010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.204"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            1..618
                     /locus_tag="ACJFEZ_001834"
                     /pseudo
     CDS             1..618
                     /locus_tag="ACJFEZ_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            618..1223
                     /locus_tag="ACJFEZ_001835"
     CDS             618..1223
                     /locus_tag="ACJFEZ_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HGG0917916.1"
                     /translation="MKTELEIFSTRYSCRNFKNEKLKKEDLDTILEIARLSPSSLGLE
                     PWRFLVVQDDNKKEELAQICNQQQHVKDCGVLIIIVSRLDFLDYFEDKLRKRDMSEAE
                     IQKRLDTYMPFLQSLSQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLLLDTKKEKSTLVIALGYSNDEKIPQKNRFEFDKIVQFL"
BASE COUNT          449 a          168 c          227 g          382 t
ORIGIN      
        1 tgaattttaa agaactaatt tcaaaacgca gagcttgtaa actttttaat gataaaaaaa
       61 tcagtgaaga agatttgcat tttatcttag aaagcggagt cttagcccca agctcgcatg
      121 gatttgagcc ttggaaattt atcatactag acaaaaaaga agacaatcaa aagcttgcta
      181 aactttgttt tgatcaagca agcgtagcaa gtgcgagtca taatatcatt tttagcaaga
      241 aaagacttgc aaagcaagga tgaatttgca caaaaacaag tgcgtcgttt ctcaggttct
      301 agcgaagaaa attttcaaaa aattttagaa atttatactc ataaaaccaa tgcaatgaat
      361 gataatgaac tctatcatta tgcacaactt caatgctatc ttgcaatgat gcaaatgtcg
      421 ctagctgcga tgagtttggg ggttgattct tgtatgatag ggggctatga aaaagataag
      481 gtggatgatt ttcttaaact tgagtatcct tttgaaacgg ctgtgatctt atctttgggc
      541 tatcaagctc acgagccaaa ataccctact caacgtttaa aatttgatga agtggttgaa
      601 ttttataagg agaagtgatg aaaacagaac ttgaaatttt tagcacaaga tattcttgta
      661 gaaattttaa aaatgaaaaa cttaaaaaag aagatttgga tactatttta gagatagcaa
      721 gattaagtcc tagttcttta gggcttgagc cttggagatt tttagtggtg caagatgaca
      781 ataaaaaaga agagctggct caaatttgca atcaacaaca acatgtaaaa gattgcgggg
      841 tgttaattat cattgtttca aggcttgatt ttttagatta ttttgaagat aagcttagaa
      901 aaagagatat gagtgaagca gaaattcaaa aacgcttaga tacttatatg ccttttttac
      961 aatcccttag tcaagaacaa aaaatatcct atgcaagaga acaagctcat atagcacttg
     1021 cgagtatact ttatagtgcc aatgctttaa atatagcaag ttgtaccata ggcggttttg
     1081 ataaagaaaa actcgattct tatcttttgc ttgatactaa aaaagaaaaa tctactttgg
     1141 tgatagcttt agggtattct aatgatgaaa aaattccaca aaaaaatcgc tttgaatttg
     1201 ataagatagt tcaatttctt tgattt
//
LOCUS       DBBXRO010000204         1188 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.205, whole genome shotgun sequence.
ACCESSION   DBBXRO010000204 DBBXRO010000000
VERSION     DBBXRO010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.205"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            8..331
                     /locus_tag="ACJFEZ_001836"
     CDS             8..331
                     /locus_tag="ACJFEZ_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917917.1"
                     /translation="MKRGFAKIEFFANLEYLKQEYNKGYVVSKILYEKAKQDKNISMV
                     YSQFNKYFNEVFKNKIEKREITQENNQSLALENKEPIKVKIDTKSKKVFDAKFGKDIK
                     EDDLL"
     gene            727..1027
                     /locus_tag="ACJFEZ_001837"
                     /pseudo
     CDS             727..1027
                     /locus_tag="ACJFEZ_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790816.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          479 a          140 c          177 g          392 t
ORIGIN      
        1 atttgcaatg aaaagaggtt ttgcaaaaat agaattcttt gctaatttag aatacttaaa
       61 acaagaatat aataaaggct atgtagtttc taaaatactt tatgaaaaag caaagcaaga
      121 taaaaatata tcaatggttt attcacaatt taataaatac ttcaatgaag tttttaaaaa
      181 taaaatagag aaaagagaaa taacacagga aaataatcaa tctttagctt tggaaaataa
      241 agagcctatc aaagtaaaaa ttgatacaaa atcaaaaaaa gtatttgacg ctaaatttgg
      301 aaaagatatc aaagaagatg atttattata aatctgaaac ttctgcaatt ctagcattaa
      361 aacaattcaa atagccagtc ttacaccaaa aataaaaata tttaagaaaa taaaaaactt
      421 aaacaattaa attctcattt taccattact ttaagtttca aagaaaaata ctctaaactt
      481 aaaaagaaat atttttattt ataaaaagcc tatattatcg ataatcaaag caattaaacc
      541 ttaatttgaa aactctactt ttcaaatcat aacttctttt tggtgtatat agcaaattgc
      601 acctaagtag gtgctataat ttgcgtagat atggggtgcg gggtgtgcag tcgcctagag
      661 cgacaaacga acttgacccc gccctattgt tgtaagaaga gtaagagacg cttagtctct
      721 tcaaatttgc aaatgagcgt tagcgaaatt tgctgtaaaa aattttttgt tttcaagagt
      781 agattaagaa ggaaaagact taaaaaaatg ctttcaaata taggtataat agtgctttga
      841 taaggttttt aattttccca ccagtgggaa aaaactgctc gtggtgggaa aattattttt
      901 agaaaaaatt atgtttccaa ataaattggg aaaaaattgc tttttttact taaatatgtt
      961 tcattttttg ggaaaattgg aaattgtttt tgaatttgta agaatagata tagaagagat
     1021 agcttaatta aaaatgcttt taaatatata ttttatagtg ctttgaagca cttttaatct
     1081 gtctcatcag tgagacaaat agtctcatca gtgagacaag ttagctcacc tgtgagacgg
     1141 attgaagtta ctttgtctca aattatgata caatatttta tattttat
//
LOCUS       DBBXRO010000205         1184 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.206, whole genome shotgun sequence.
ACCESSION   DBBXRO010000205 DBBXRO010000000
VERSION     DBBXRO010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.206"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>1184
                     /locus_tag="ACJFEZ_001838"
     CDS             <1..>1184
                     /locus_tag="ACJFEZ_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HGG0917918.1"
                     /translation="FNDVNHKTKILLDNDVAIVKHSKIRQYDLLDKVFLYEKRIWLKL
                     KNDTKTLDICINSQKLKLVFNDRCINDLSLVLKVLAKQKKQRSKNSNLWLFADMSWRA
                     DDNAEHLYRYIMQNHPKQKTAFILSKNSTDYPRLKKEGFRLVDPRSFYFKYLIYKADK
                     IISSHIDRYIFNALGGDTLKTKDFIFLQHGVIKDDLSRWLNQRKIDTFITSTKAEYES
                     IAGDFNHYKFSTKEVVLTGLARWDALIKNNVLNTKQIVIMPTWREYLSGKVQKYGVRA
                     RNPEFVKSLYFQKWQEFLCSKELEKLSVRYGYNIIFTPHPQVRIYLEDFNLPSYIITS
                     YKENMQELFCRSSLMITDYSSVAFEMAILNKPVLYYQFDKDEFFVRHSYTKGYFDYNK
                     DG"
BASE COUNT          456 a          140 c          191 g          397 t
ORIGIN      
        1 attttaatga tgttaatcat aaaactaaga ttttattaga taatgacgtg gctattgtaa
       61 agcattctaa aataagacaa tacgatttat tggataaagt tttcttatat gaaaaaagaa
      121 tatggcttaa gcttaaaaac gatactaaaa cgcttgatat ttgtataaat tcgcaaaaac
      181 taaaacttgt ttttaatgat agatgtataa atgatttaag cctagtttta aaggttttag
      241 ctaagcaaaa aaaacaaaga tcaaaaaact ctaatttatg gctttttgcc gacatgagtt
      301 ggagggctga tgataatgct gagcatctat atagatatat catgcaaaat catcccaaac
      361 aaaaaaccgc ttttatttta agcaaaaatt caactgatta tccaagactt aaaaaagaag
      421 gttttagatt ggttgatcca agaagctttt attttaaata tctgatttat aaagctgata
      481 aaattatttc ttctcatata gataggtata tttttaatgc tttgggcgga gatactttaa
      541 aaactaaaga ttttatcttt ttgcaacatg gagtaataaa ggatgattta tccagatggc
      601 ttaatcaaag aaaaatagat acatttatca caagcacgaa agcagaatat gaatctatag
      661 caggtgattt taatcattac aaatttagca ccaaagaagt agttttaaca gggttggcaa
      721 gatgggatgc cttgattaaa aacaatgttt taaatactaa acaaattgtc attatgccaa
      781 catggcgaga gtatttaagt gggaaagtgc aaaaatacgg ggttagagct agaaatcccg
      841 aatttgtaaa atcactttat tttcaaaaat ggcaagaatt tttatgcagt aaagaattag
      901 aaaaactatc agtgcgatat ggatataaca ttatttttac accgcatccg caagtaagaa
      961 tatatttaga agattttaat ctaccttctt atataattac ttcttataaa gagaatatgc
     1021 aagaattatt ttgtagatca tctttgatga taacggatta ttcaagtgtt gcatttgaaa
     1081 tggcaatttt aaataaacct gtgctttatt atcaattcga taaggatgag ttttttgtaa
     1141 gacattcgta cactaaaggc tattttgatt ataataaaga tggt
//
LOCUS       DBBXRO010000206         1181 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.207, whole genome shotgun sequence.
ACCESSION   DBBXRO010000206 DBBXRO010000000
VERSION     DBBXRO010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.207"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            12..647
                     /locus_tag="ACJFEZ_001839"
     CDS             12..647
                     /locus_tag="ACJFEZ_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004288266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HGG0917919.1"
                     /translation="MDHHKLIPLWDERYNINHQKIDTQHQRLFEPAAQVENAVFKFVK
                     RDELKEILTELFAYMKEHFHDEEEFMQEIQYPRLYEHKQMHKNIIHEMFQLIQNIKST
                     NDLKEKLYSIMSKWLSRHILSHDVMIIAWVNENLKKDENKALELNDLPPKQTLTQEEN
                     FEFIYSCPCKIDHRLSFKEHESITNEGKVMRCKKCQELLFFIRSQEKTYKG"
     gene            651..989
                     /locus_tag="ACJFEZ_001840"
     CDS             651..989
                     /locus_tag="ACJFEZ_001840"
                     /inference="COORDINATES: protein motif:HMM:TIGR02481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HGG0917920.1"
                     /translation="MLPKWDKIYSVHNGRIDNQHKKLFELAAKVEHIFDKPVHRDEIK
                     ALLTDFFNYMKYHFDDEEKYMQFIRYPDFERHRQIHKEIIQSMIKIIQNIKTTNDLRE
                     KLYIMVKNGF"
     gene            1010..>1181
                     /locus_tag="ACJFEZ_001841"
     CDS             1010..>1181
                     /locus_tag="ACJFEZ_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family non-heme iron protein"
                     /protein_id="HGG0917921.1"
                     /translation="MRVEQWRLGSLSSENGADITFEEIKDDEDEAVIYFYACECIGQI
                     HDVPSGIHKKIQN"
BASE COUNT          477 a          179 c          188 g          337 t
ORIGIN      
        1 gagttaaatc aatggatcat cataagctaa ttcccctttg ggatgaacgc tataatatca
       61 accatcaaaa aatcgatacc caacaccaaa gactcttcga acctgcagca caagttgaaa
      121 atgcagtttt taaatttgtt aagcgcgatg aattaaaaga aattttaacc gaactctttg
      181 cttatatgaa agaacatttt catgatgagg aagaatttat gcaagaaatt caatatccac
      241 gcctttacga gcacaaacaa atgcataaaa atatcataca tgaaatgttt caattgatac
      301 aaaatataaa atctacaaat gatttaaaag aaaaactata ctctatcatg tcaaaatggc
      361 tttctaggca tattttaagc catgatgtta tgattattgc ttgggtaaat gagaatttaa
      421 aaaaagatga aaataaagca cttgagttaa acgatttgcc accaaaacaa accctaacac
      481 aggaggaaaa tttcgaattt atctattctt gtccttgcaa gatagatcat aggttaagct
      541 ttaaagagca tgaaagtatt accaatgaag gcaaggttat gagatgtaaa aaatgtcaag
      601 agcttttatt ttttattaga agccaagaaa aaacttataa gggataaagc ttgcttccaa
      661 aatgggataa aatctatagc gttcataatg gcagaataga caaccaacac aaaaagctgt
      721 ttgaacttgc agccaaagtt gaacatatat ttgataaacc cgttcataga gatgaaatta
      781 aagctttgct tacagatttt ttcaactata tgaaatacca ttttgatgat gaagaaaaat
      841 atatgcaatt cattcgttat ccagactttg aaaggcatcg ccaaattcat aaagaaatca
      901 tccaatccat gataaaaatc attcaaaaca taaaaaccac caacgaccta agagaaaaac
      961 tttatatcat ggtaaaaaat ggcttttaga acacatactt tatgaagata tgagagtaga
     1021 acaatggaga ttaggttctt taagctctga aaatggagct gatatcactt ttgaagaaat
     1081 taaagatgat gaagatgagg ctgtaattta tttttacgct tgcgagtgca tagggcaaat
     1141 tcatgatgta ccttctggaa ttcataaaaa aatacaaaat g
//
LOCUS       DBBXRO010000207         1159 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.208, whole genome shotgun sequence.
ACCESSION   DBBXRO010000207 DBBXRO010000000
VERSION     DBBXRO010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.208"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..363
                     /locus_tag="ACJFEZ_001842"
     CDS             <1..363
                     /locus_tag="ACJFEZ_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917922.1"
                     /translation="VRGGAFQSVGNCLSGTNSCLSLAVSQTITGTHYRDFKAILTNEE
                     PHSTNYHIGFVAQKNWSISSLGKPYSFLTYSAIIFDRASGTMYKQSSQVLNNNGIVRE
                     LSYRYKNQFDRQLGGLSR"
     gene            413..>1159
                     /locus_tag="ACJFEZ_001843"
     CDS             413..>1159
                     /locus_tag="ACJFEZ_001843"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917923.1"
                     /translation="MINTAYINNHHKGGYSTQKLKDISQATTQSLGISKNYKIDATQM
                     QTLVKNLSQNKHFDTIDFTKTLENAYKVFSNLMQFSKNELPLGFEMDKNSFEILKIYD
                     KAQDLENNFLNENNSYKGSKVVINLKDLNSKDKSFMNFANVVFNQFGGGYLIEGQSNI
                     SGKLMGFDKNMDKNQIQDLNDFIKNNSFIANGSMEKLMEALDLFSSNLSIEEFKQKWL
                     NLTINLEPSNKTIEQIVREDLKAKEEQKPRT"
BASE COUNT          468 a          152 c          191 g          348 t
ORIGIN      
        1 gttaggggag gtgcgtttca atctgtcggt aactgtttaa gtgggacaaa ttcttgctta
       61 agtcttgccg taagtcaaac tataacagga actcattata gagattttaa agctattctt
      121 acaaacgaag agcctcatag cacaaattat catatagggt ttgtcgctca aaaaaattgg
      181 tctatatcta gtcttggaaa accttatagt tttcttacat actctgccat cattttcgat
      241 agagcttctg ggacaatgta taaacaaagc agtcaagtat taaataataa tggaattgtt
      301 agggagctta gttatagata taaaaatcaa tttgataggc aattaggcgg attatcaagg
      361 taaaaaccat aaagccgatt taaattaaga taaatcagca aggagtgaga gtatgataaa
      421 cacagcttat ataaataacc atcataaagg tggttattct actcaaaaat taaaagatat
      481 atctcaagca acaacgcaaa gcttgggaat ttcaaaaaat tataaaattg atgcgacaca
      541 aatgcaaaca ctagttaaaa atctttctca aaataaacat ttcgacacta tcgattttac
      601 caaaacgcta gaaaacgcct ataaagtgtt ttctaattta atgcaatttt ctaaaaatga
      661 acttccgcta ggttttgaaa tggataaaaa tagttttgaa attttaaaaa tttatgacaa
      721 ggcacaagat ttagaaaata attttttaaa tgaaaataat tcttataaag gaagcaaagt
      781 ggtcataaat ttgaaagatt taaactcaaa ggataaatct tttatgaatt ttgcaaatgt
      841 agtttttaat caatttggtg gcggttatct tattgaagga caaagcaata taagcggtaa
      901 gttaatggga tttgataaaa atatggataa aaatcaaatc caagatttaa atgactttat
      961 aaaaaataat tcttttatag ctaacggctc aatggaaaaa cttatggaag cactcgattt
     1021 gtttagtagc aatttaagca tagaagaatt taaacaaaaa tggctaaatt taacaataaa
     1081 tttagagcca agcaataaaa ccatagagca aattgtaaga gaagatctta aggctaaaga
     1141 ggagcaaaaa cctcgcact
//
LOCUS       DBBXRO010000208         1119 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.209, whole genome shotgun sequence.
ACCESSION   DBBXRO010000208 DBBXRO010000000
VERSION     DBBXRO010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.209"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..527)
                     /locus_tag="ACJFEZ_001844"
     CDS             complement(<1..527)
                     /locus_tag="ACJFEZ_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HGG0917924.1"
                     /translation="MYVTPSYLDLTTNLPCFTYATPLYKEGKFIGVLAIDILVKDLQR
                     EFENLPGRTFVFDSENSIFVSTDKELLKPGYDVSPVANIAKDKKDYEPFRYARPLDGT
                     QRFGVCAKVLGEYTACVGEPIDYIEEPVFKIAYIQIAIVIITSIISVLLLYFIVSRYL
                     SPLASIQVGLNSFFN"
     gene            complement(600..935)
                     /locus_tag="ACJFEZ_001845"
     CDS             complement(600..935)
                     /locus_tag="ACJFEZ_001845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HGG0917925.1"
                     /translation="MSNFLGIITFIFVKDEVFNQVVKSESNYVRTTKNSMEAFKARNT
                     AALESLAKNILKLPYEQISNQEALMRYVGKDLKVFRDAGGFLAVYIAQPDGELVVTDP
                     DSDEKGLNF"
BASE COUNT          408 a          197 c          145 g          369 t
ORIGIN      
        1 aagttgaaga aggagttaag tcctacttgg atagaagcaa gtggggatag atagcgtgat
       61 acaataaaat aaagtaaaag aacgctaata atacttgtaa taattactat agcaatttgt
      121 atataagcaa ttttaaacac aggctcttct atataatcaa taggttctcc tacacaagct
      181 gtatattctc ctaacacctt agcacataca ccaaatcttt gagttccatc aagtggtctt
      241 gcataacgga aaggctcata gtctttttta tctttagcga tattcgcaac agggctaaca
      301 tcataacctg gttttaaaag ctctttatca gtagaaacga aaattgaatt ttcgctatca
      361 aacacaaaag ttcttcctgg taagttttca aattctcttt gcagatcctt taccaaaata
      421 tcaattgcta aaactccgat aaattttcct tctttataaa gcggtgtagc ataagtaaaa
      481 caaggtaggt tagtagttaa atcaagataa gaaggagtta catacaagcc atttgctttt
      541 acagctcctt taaaataatc ccttgttcta gcatcataat tgtctgcttt accataaatt
      601 cagaaattta aacctttttc atcagaatca ggatctgtaa caacaagttc accatcaggc
      661 tgagcaatat aaactgctaa aaaccctcca gcatctctaa acacctttaa atccttacct
      721 acataacgca ttaaagcttc ttgattgctg atttgttcat aaggaagttt taaaatattt
      781 ttagccaagc tttcaagagc tgcggtattt cttgctttaa aagcctccat agaattttta
      841 gtagttctta cataattact ttcagactta accacttgat taaaaacctc atccttaaca
      901 aagataaatg ttataatccc taaaaaatta gacacacaat tgctatcaaa tttgcaataa
      961 gtgagacttt aattttgaca cttttcacag attttacacc tttctttaat aaattttaaa
     1021 agagaatttt tgatgttgta attataaata agcaaattta aacttaaatt aaaaaatata
     1081 ccctataaaa caataatttc atatagatgt gctataaaa
//
LOCUS       DBBXRO010000209         1111 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.210, whole genome shotgun sequence.
ACCESSION   DBBXRO010000209 DBBXRO010000000
VERSION     DBBXRO010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.210"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            43..>1111
                     /locus_tag="ACJFEZ_001846"
     CDS             43..>1111
                     /locus_tag="ACJFEZ_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HGG0917926.1"
                     /translation="MIKKIEHYKNILISNFKGLIFTASIVFFAMYLSSVQSIKDTTHL
                     AAAAFAIIIGALLSPWFFKYQHHLQAGVHFSAKKLLRLGIILYGFNITLTELLSVGLK
                     GFILSMIVIFFIFILALIVGVKVFKLDKETSMLVGAGSAICGAAAVLALESSLKSDPF
                     KGILAVGTVVIFGLVFMFLYPIVFSLDLFPYFNQHAMGIFMGATLHEVANVVGAAEMA
                     KDMANFDQSASNIAIIIKMMRVILLVPFLLIITYFFAKNQHSSKEKTEKNISIPYFAF
                     IFLGVIVINTYLASRENFLGISTSDIISFGKLLCTLCIVFAMAALGLQIDFKKFLKSG
                     SRVFGLAFVLGLVLVFGGYFLT"
BASE COUNT          333 a          130 c          198 g          450 t
ORIGIN      
        1 tttaattgta attttataat tgcaaattaa aggagaaaac atatgataaa aaaaatagag
       61 cattataaaa atatactgat ttcaaatttt aaaggtttga tttttacagc ctctatagtg
      121 ttttttgcaa tgtatctttc aagtgttcaa agtattaaag atacaaccca tttagcagca
      181 gctgcttttg ctattattat aggagcatta ctttcacctt ggttttttaa ataccaacat
      241 catttacaag caggagtgca ctttagtgct aaaaaacttt taagattggg tattatctta
      301 tatggtttta atattactct aaccgaactt ttaagtgtgg gattaaaagg ctttatactt
      361 tctatgatag ttatattttt tatttttatt ttagctttga ttgtgggtgt aaaggttttt
      421 aaactagata aagaaacttc catgctagta ggtgctggaa gtgctatttg tggagcagca
      481 gctgttttag ccttagaatc aagcttaaaa agtgatccct ttaaaggaat tctagccgtt
      541 ggtacagtgg tgatttttgg gcttgttttt atgtttttat atcccatagt tttttcttta
      601 gatctttttc cttattttaa tcaacatgct atgggtatat ttatgggtgc aactttacat
      661 gaggtagcca atgttgtagg agctgctgaa atggcgaaag atatggcaaa ttttgatcaa
      721 agtgcttcaa atattgccat tattataaag atgatgagag tgattttgct tgtgccattt
      781 ttattgatta taacttattt ttttgctaaa aatcagcatt caagcaagga aaaaacagaa
      841 aaaaatataa gtattcctta ttttgcattt atttttttag gagtgattgt tataaatact
      901 tatttggcaa gtagggaaaa ttttcttgga atttctacaa gtgatattat atcttttgga
      961 aaattacttt gtactctttg tattgttttt gctatggctg ctttaggact tcaaatcgac
     1021 tttaaaaaat tcttaaaaag tggctcaaga gtttttggtt tagcttttgt tttgggattg
     1081 gttttggttt ttggaggata ttttctgacc c
//
LOCUS       DBBXRO010000210         1107 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.211, whole genome shotgun sequence.
ACCESSION   DBBXRO010000210 DBBXRO010000000
VERSION     DBBXRO010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.211"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            27..1058
                     /gene="pseI"
                     /locus_tag="ACJFEZ_001847"
     CDS             27..1058
                     /gene="pseI"
                     /locus_tag="ACJFEZ_001847"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HGG0917927.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFMRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIASLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIEFG
                     DALKQGDFQ"
BASE COUNT          424 a          173 c          201 g          309 t
ORIGIN      
        1 aggaaattta ccaaagaaag aaaaacatgc aaataggaaa ttttaacacc gataaaaaag
       61 tttttatcat agcagaactt agtgcaaatc acgcaggaag tcttgagatg gcacttcaaa
      121 gcataaaagc agccaaaaaa gcaggtgctg atgcgataaa aatccaaacc tacactccag
      181 atagcctcac gctaaatagc gacaaagaag attttatcat caaaggagga ctttgggaca
      241 aaagaaaact ttatgagctt tatgaaagtg caaaaacccc ttatgaatgg cattctcaaa
      301 tctttgaaac cgcacaaaat gaaggcatac tttgtttttc aagtcccttt gctaaagaag
      361 atttggaatt tctaaaacgc tttgatccta tagcctataa aatcgcttct tttgaagcta
      421 atgatgaaaa tttcatgcgt ttaatcgcca aagaaaaaaa acctactatc gtttcaacgg
      481 gcattgctac agaagaagaa ctttttaaaa tctgtgaaat ttttaaagaa gaaaaaaatc
      541 ctgatttaat ctttttaaaa tgcacttcgg cttatcctac tgccatagaa gatatgaatt
      601 taaaaggcat agcaagttta aaagaaaaat ttaatgttga agtgggacta agtgatcata
      661 gctttggttt tttagcccct gttatggcag tagcacttgg agctagagtg atagaaaagc
      721 attttatgtt agataaaagc atagaaagtg aagacagtaa atttagtctt gattttgatg
      781 aatttaaagc tatggtagat gcagtaagac aagctgaaag tgctttaggc gatggtaagt
      841 tagatctaga tgaaaaggcg cttaaaaacc gtgtttttgc aagaagctta tatgcaagta
      901 aggatatcaa aaaaggtgaa atgttcagcg aagaaaatgt aaaatccgta cgtccttctt
      961 ttggactaca tcctaaattt tatcaagaac ttttaggaaa aaaagccact aaagatatag
     1021 aatttggcga tgctttaaaa caaggagatt tccaatgacc ttcaccccta ctcaaaaaga
     1081 actctttaac aaaaacattg agtcttt
//
LOCUS       DBBXRO010000211         1077 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.212, whole genome shotgun sequence.
ACCESSION   DBBXRO010000211 DBBXRO010000000
VERSION     DBBXRO010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.212"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..963
                     /locus_tag="ACJFEZ_001848"
     CDS             <1..963
                     /locus_tag="ACJFEZ_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HGG0917928.1"
                     /translation="VKKLNKKVIAITNFYFIEQIYKLKCANLINMIDYLVCSEEFELE
                     KPNKALINRALELYKDLIDEEEIVMIGDSVVDNFLGRGCRINYYPYNCSKLLISISGK
                     SGSGKTTLSKAIDEIYESFIISTDGYHKYERHSKMWERITHYNPKANNLIQLAMDIKH
                     IYQDIGNKLHIPIYDHKSGVIIKSNEIKVKDLDIVIIEGLHTLYQEVIGDFVKIKIYI
                     DSDEADNQKINRDSKERNYEYSKIISTIQKREEDYKKYLKKQKDNANFLILIREGIFK
                     IQLKDILLNDYLQKEYIGKYEDLIHTVKDIFSLILRNRWIIKND"
     gene            956..>1077
                     /locus_tag="ACJFEZ_001849"
     CDS             956..>1077
                     /locus_tag="ACJFEZ_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HGG0917929.1"
                     /translation="MINDRERLDSCIKDYQKLCKIFGNILDAPSKGGNISIKDN"
BASE COUNT          453 a          102 c          181 g          341 t
ORIGIN      
        1 gtaaaaaaat taaataaaaa agttatagct attactaatt tttattttat agaacaaatt
       61 tataagttaa agtgcgcaaa tcttataaat atgattgatt atttagtatg ctctgaagaa
      121 tttgaacttg aaaaaccaaa taaagctctt atcaacagag ccttggagtt atataaagat
      181 ttgatcgacg aggaagagat tgtaatgatc ggagactctg ttgtagataa ctttttgggg
      241 agagggtgta ggatcaatta ctatccttat aattgctcta aattattgat ttctatttct
      301 ggaaaaagtg ggagtggaaa aaccacttta agtaaagcta ttgatgaaat atatgaaagt
      361 tttattatta gcacggacgg ctatcacaaa tatgaaagac attctaaaat gtgggagagg
      421 atcacgcatt ataatccaaa agcaaataat cttattcaat tggctatgga tataaaacat
      481 atttatcaag atatcggaaa taagttgcat ataccaatat atgatcataa aagtggagtg
      541 attattaaat ccaatgagat taaagttaaa gatttggata tagtaattat agaaggttta
      601 catactttat atcaagaggt aataggtgat tttgtaaaaa taaaaatata tattgattca
      661 gatgaagcag ataatcaaaa aatcaatagg gatagcaagg aaagaaacta cgaatactca
      721 aaaattatta gtactataca aaaacgagaa gaggactata agaagtatct caaaaaacaa
      781 aaggataacg ctaacttttt aattttaatt agagagggta tttttaaaat tcaattaaaa
      841 gatatactat taaacgatta tttacaaaaa gaatatattg gtaaatatga agatttaatt
      901 cacactgtca aagatatttt tagtttaatt ttacgaaatc ggtggataat aaaaaatgat
      961 taatgataga gaaagactag atagttgtat taaagattat caaaagctat gtaagatttt
     1021 tggaaatatt ttagatgcac catcaaaggg tggaaatatt tctatcaaag ataatga
//
LOCUS       DBBXRO010000212         1025 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.213, whole genome shotgun sequence.
ACCESSION   DBBXRO010000212 DBBXRO010000000
VERSION     DBBXRO010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.213"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..687)
                     /locus_tag="ACJFEZ_001850"
     CDS             complement(<1..687)
                     /locus_tag="ACJFEZ_001850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917930.1"
                     /translation="MKKKLAIQLFGHMRTYEQTYEKFKENIINVNLQDGWEIDLFIHT
                     WNKFNSSSKSWHESLNLFSNNDYLKEEDKIKIQKLYNPKVLSIEFLNEGEHGGLLSKI
                     RGNELRKQYSQEHNNKYDYILYTRPDLLFISPFRIDIFLSIYLQGAYKNIGLPKKHTF
                     CCNNFFRGRKVADPRVLNEADLIYFSSFEQNFFRPEENRDFLNISLDYTLHKDFFIQR
                     EKFIHGWRSHP"
     gene            complement(690..>1025)
                     /locus_tag="ACJFEZ_001851"
     CDS             complement(690..>1025)
                     /locus_tag="ACJFEZ_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917931.1"
                     /translation="QNQLSYKLGQAMIVNSKSILGYIRMPFVLSYIHDKHKQEQKIYQ
                     EKIKKDPSLKLPPLESYPDYKEALKEKECLTYKLGEALIKASKTWYKGGYVKMLLEIG
                     KLKKDSFGV"
BASE COUNT          339 a          167 c          121 g          398 t
ORIGIN      
        1 tggatgactt ctccatccat ggataaattt ttccctttga atgaaaaaat ccttatgtaa
       61 tgtataatct aaagatatat ttaaaaaatc tctattttct tctggccgaa agaaattttg
      121 ctcaaaacta gaaaagtaaa tcaaatctgc ttcatttaaa actctaggat ctgctacctt
      181 gcgtcctcta aaaaaattat tacaacaaaa tgtatgcttt tttggcaatc ctatattttt
      241 atatgcaccc tgcaaatata tagataagaa aatgtcaatt ctaaaaggac ttataaaaag
      301 tagatctggt ctagtataaa gaatatagtc atatttatta ttatgttctt gcgaatattg
      361 ctttctcaat tcattaccac gaattttaga tagcaaacca ccatgttcac cttcatttaa
      421 aaattctata cttaaaacct tgggattgta taatttttga attttaattt tgtcttcttc
      481 ctttagataa tcgttattag aaaataaatt aagactttcg tgccaactct tgctggatga
      541 attaaattta ttccaagtat gaataaacaa atctatctcc caaccatcct gaagattgac
      601 attaataata ttttccttaa atttttcata tgtttgctcg tatgttctca tatgaccaaa
      661 tagctggata gcaagtttct ttttcattat tatactccaa aactatcttt ctttaatttt
      721 ccaatctcaa gcaacatctt aacatatcca cccttatacc aagttttgct agccttaatc
      781 aaagcctctc ccaacttata agttaaacac tctttttctt ttagagcttc tttataatca
      841 gggtaagatt ctaaaggagg tagttttaaa gaaggatctt tttttatctt ttcttgatag
      901 attttttgtt cttgtttatg tttatcatgt atataagata gtacaaaagg cattcttata
      961 taacctagta tagatttaga atttactatc atagcttggc ctaatttata agagagttga
     1021 ttttg
//
LOCUS       DBBXRO010000213         1011 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.214, whole genome shotgun sequence.
ACCESSION   DBBXRO010000213 DBBXRO010000000
VERSION     DBBXRO010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1011)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.214"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            32..>1011
                     /locus_tag="ACJFEZ_001852"
     CDS             32..>1011
                     /locus_tag="ACJFEZ_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HGG0917932.1"
                     /translation="MNNIKIKLSVIANSIAIFALSILSIISFYFTKDSLYQSTLHAET
                     DLLKATQISIEDFRSRNISLLNTLEKDILNLPYEALNSQDNIVNNVGAILKYYRNSGN
                     LLAVYIGLDNGENIVSDDLSEKKNTNITINGKANNYNATTREWYKEARNSNQTYITPA
                     YIDVVSNEYAITYSKALYKDGKFIGVLGLDVLLISLQDEIARTPGNTFVFDHKDRVFA
                     ATNKALLDPSVDHSPVLNAYKAHGDNNFFSYKLNNEERLGTCTKVFAYTACITESTDV
                     INKPIFKAAYIQVIALIIMISISIILLYFIVSKYLSPLAAIQTGLTSFFD"
BASE COUNT          371 a          154 c          144 g          342 t
ORIGIN      
        1 gctaaaaata acaaaaatta aaaggaaaaa catgaataat atcaaaataa aactttctgt
       61 tattgcaaat tcaattgcaa tttttgcttt aagtattttg agcatcatta gtttctactt
      121 tacaaaagat tctttgtatc aaagtacgct tcatgctgaa acagaccttc ttaaagcaac
      181 acaaatttct atagaggatt ttagatccag aaatatatct ttgcttaata ctcttgaaaa
      241 agatatatta aatttaccct atgaagcact aaattctcaa gataacatag ttaataatgt
      301 aggagccata ttaaaatact accgcaatag tggaaatttg cttgctgttt atattggttt
      361 agataatggt gaaaatatcg tgagtgatga tctaagcgag aaaaaaaata ctaatataac
      421 tataaatgga aaagccaaca actataatgc aactactagg gaatggtata aagaagctag
      481 aaatagtaat caaacgtata taaccccagc ttatattgat gttgttagta atgaatacgc
      541 cattacttac tctaaagctc tttataagga tggtaaattt attggtgttt taggattgga
      601 tgttttatta attagtttac aagatgaaat cgctagaact ccaggcaata cctttgtttt
      661 tgatcataaa gatagagttt ttgcagccac caacaaagct ttattagatc cttcggtaga
      721 ccattctcct gttttaaatg catataaagc tcatggtgat aacaacttct tctcttataa
      781 gttaaataat gaagaaagac ttggaacttg tactaaagtc tttgcttata cagcttgtat
      841 taccgagagt acagatgtaa taaataaacc tatatttaaa gcagcatata tacaagttat
      901 agccttaatt attatgatat ctattagcat catcctcctt tatttcatcg tatcaaaata
      961 cctctctcca cttgcagcta tccaaacagg tttaacttca ttctttgatt t
//
LOCUS       DBBXRO010000214         1005 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.215, whole genome shotgun sequence.
ACCESSION   DBBXRO010000214 DBBXRO010000000
VERSION     DBBXRO010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.215"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..569
                     /locus_tag="ACJFEZ_001853"
     CDS             <1..569
                     /locus_tag="ACJFEZ_001853"
                     /inference="COORDINATES: protein motif:HMM:NF024573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0917933.1"
                     /translation="IDEIFYENPDSNKILNYHVDKWIKEILDLEISFTTNESIDIILN
                     GFKDKNFSNYFLPSNISTGLNFATKIIIIGLSLKKGDIFIIENPEIHLHPKAISKFAD
                     FFAFLVSKGIQVIIETHSNYLLSKLRYINFKKEFKDEDCIIYYKDQQTDFVPIFIHSG
                     KFTNINREKINFPTGFFDTDLDKLMEIR"
     gene            566..>1005
                     /locus_tag="ACJFEZ_001854"
     CDS             566..>1005
                     /locus_tag="ACJFEZ_001854"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917934.1"
                     /translation="MKFSLVLDDEVLIEFEKFKNSLECDKNIIENLFKYYKPTHLINL
                     KQIQKLEESNLVIDSDIKSAFLQSGYANLTLEKLSQKTTLKIILTNDKNKSFPYLYIK
                     DEKIENNLCATFKQKESREKAFEYFKNLFLEANSIFIYDQYLTQ"
BASE COUNT          424 a          116 c          116 g          349 t
ORIGIN      
        1 gtattgatga aattttttat gaaaatcccg atagtaataa aattttaaat tatcatgttg
       61 ataaatggat aaaagaaata ttggatttag aaatttcttt tacgacaaat gaaagtatag
      121 acattatact caatggattt aaagataaaa atttttctaa ttatttcctg ccatctaata
      181 tatccactgg cttaaatttt gctactaaga ttattattat tgggttatct ttaaaaaaag
      241 gagatatatt tataatagaa aacccagaaa ttcatttgca tccaaaagct atctctaaat
      301 ttgcagattt ctttgcattt ttggtttcaa aaggaattca agttatcatc gaaactcatt
      361 ctaattatct tttgagtaaa ttaagatata taaatttcaa aaaagaattt aaagatgaag
      421 attgtattat ttactataaa gatcaacaaa cagattttgt accaattttt attcattctg
      481 gaaaatttac caacataaat agagaaaaaa ttaattttcc tacaggattt tttgacacag
      541 atttggataa attaatggaa ataagatgaa attttcactt gtgcttgatg atgaagtatt
      601 aatagaattt gaaaaattca aaaattctct tgaatgcgac aaaaatatca tcgaaaattt
      661 attcaaatac tataaaccaa cacatttaat caatttaaag caaattcaaa aattagaaga
      721 atcaaatcta gttatagaca gtgatataaa aagtgctttt ctccaaagtg gatatgctaa
      781 tctaacctta gaaaaactct cacaaaaaac tactctaaaa atcattttaa caaatgacaa
      841 aaacaaatct tttccatatc tttatataaa agatgaaaaa atagaaaaca atttatgtgc
      901 aacatttaaa caaaaggaat ctagagagaa agcttttgaa tattttaaaa atttgttttt
      961 agaagctaat agtattttta tatatgatca gtatttaaca caaga
//
LOCUS       DBBXRO010000215          987 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.216, whole genome shotgun sequence.
ACCESSION   DBBXRO010000215 DBBXRO010000000
VERSION     DBBXRO010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.216"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>987
                     /locus_tag="ACJFEZ_001855"
     CDS             <1..>987
                     /locus_tag="ACJFEZ_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0917935.1"
                     /translation="NSRLMVLNTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYER
                     FHEDILGLNKKLAENFKNSIVSHGNDPKDALQGIEQFVYNLPQMITHPSYKELLSKRK
                     GVSDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVLSLERIP
                     LTSEFFNNDFGEFDKDILFVLKSYVHPHTTKYLQKNNRNFMLVSTYASFIQYLKLDYF
                     GYFNMGKSVANMSYLLTEYLNYKNIILIGQDLAYAKDGFSHTKDYKNLDKHEGHFQRD
                     KGKFQCLAYGGNGKVESSEIWTMFRLIFENDINYFQKFFNITTYNCTEGGARI"
BASE COUNT          357 a          132 c          141 g          357 t
ORIGIN      
        1 aattcaagat tgatggtttt gaatacaaat aaactagaaa ttcaagatta taatgaactt
       61 tgttcttcta aacctttctt tcaattttct agaatttatt ttttagaact gatgagtcat
      121 tattatgaaa gatttcatga agatatttta ggattgaata aaaaattagc agaaaatttt
      181 aaaaattcta ttgtttctca tggtaatgat ccaaaagatg ctcttcaagg catagagcaa
      241 tttgtttata atcttcctca aatgattacc catcctagtt ataaagaatt actttctaaa
      301 agaaagggtg taagtgatac agctatcatt gtttctacag gaccatctct tactaaacaa
      361 ttgcctttat taaaaaaata tgctagtaaa gctacaattt tttgtgctga ttcttcttat
      421 cctattttag ctaaacatgg tataaagcct gattatgtgc tttctttgga aaggattcct
      481 ttaacttctg aattttttaa caatgatttt ggggaatttg ataaggatat tttgtttgtt
      541 ctaaaatcct atgtccaccc tcatactaca aaatatcttc aaaaaaataa tagaaatttt
      601 atgcttgtat ctacatatgc aagttttata caatatttaa aattagatta ttttggatat
      661 tttaacatgg gcaaaagtgt agcaaatatg agctacctac ttacagaata tttaaactat
      721 aaaaacatta ttctcatagg acaggattta gcttatgcaa aagatggatt ttcccatact
      781 aaagattata aaaatcttga taaacatgaa ggacattttc aaagagataa gggcaaattt
      841 caatgtttag cttatggagg taacggaaaa gttgaaagct ctgaaatttg gactatgttt
      901 cgactaattt ttgaaaatga tattaattat tttcaaaaat tctttaatat caccacctac
      961 aactgcaccg aaggtggagc aaggata
//
LOCUS       DBBXRO010000216          940 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.217, whole genome shotgun sequence.
ACCESSION   DBBXRO010000216 DBBXRO010000000
VERSION     DBBXRO010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.217"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..682
                     /locus_tag="ACJFEZ_001856"
     CDS             <1..682
                     /locus_tag="ACJFEZ_001856"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917936.1"
                     /translation="YFLQMLHLIKKQMLFFTELEDQFLKGEVGKSSIKLDFEYYILYS
                     QFLQIDRESLISGRNYELVFCFLLYYRALLNKNNTQKIVAKIINAIRCQERLPEKIHY
                     KEKIICMDNHHRDLSQILSSCVVEFYNSIDLYNTFRKNIGFENRKKIAIEMLNRASEH
                     YGFFELNRGGITYKEAKISCAPIPVLNEFHHAMSHLCEVFLKDDARYTNLERTIPHFK
                     RGMMDIYI"
BASE COUNT          399 a          131 c          136 g          274 t
ORIGIN      
        1 atatttcctg caaatgttgc atttaataaa aaaacaaatg ctttttttta ctgaattgga
       61 agatcagttt ttaaaaggag aagtcggcaa aagtagcata aaattagact tcgaatacta
      121 tattttatat tctcaatttt tacaaataga tagagaatcc ttaatttctg gaagaaacta
      181 tgaacttgtg ttttgctttt tactttatta tagagcttta ttaaataaaa acaatactca
      241 aaaaatcgta gcaaaaataa tcaatgctat acgctgtcaa gaaagattac cagagaaaat
      301 acattataaa gaaaaaataa tttgcatgga taatcaccat agagatcttt ctcaaatatt
      361 aagctcgtgt gttgtggaat tttataattc aattgatcta tacaatacct tcagaaaaaa
      421 tataggattt gaaaatagaa aaaaaatagc gatagaaatg ctaaatcgcg catcagagca
      481 ctatggtttt tttgaattaa atagaggagg aataacatat aaagaagcaa aaatctcttg
      541 cgcccccata ccagttttaa atgaatttca tcatgccatg tcgcatttat gcgaagtatt
      601 tttaaaagat gatgcacgat ataccaatct agaaagaaca atccctcact ttaaacgcgg
      661 aatgatggat atatatatat aaaacaatca tcagagattc tcttatatta aaccaagatg
      721 ctttaggagt caaacaagaa gctctaaaaa taagagaatt agaatatcaa accataggaa
      781 aacccaaaaa agtaacaaaa aatcctacct taaacctaat cagcaaaaaa gaagaaaaag
      841 ttatcccagg atataaagaa ttatgtgaaa gaattgtcag acaaagtaaa aatacaaact
      901 aaaagcgata tgaattaagc tttagtatgc agttttggct
//
LOCUS       DBBXRO010000217          925 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.218, whole genome shotgun sequence.
ACCESSION   DBBXRO010000217 DBBXRO010000000
VERSION     DBBXRO010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.218"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            114..707
                     /locus_tag="ACJFEZ_001857"
     CDS             114..707
                     /locus_tag="ACJFEZ_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917937.1"
                     /translation="MIFLHRQNNLEFSIENYGIEIDLRYNENLVLNHDLLEKNSLYPF
                     FEEKIQFMKNIPIICNIKESGLEERVIELLGDNFEYYFLDSQIPDILRLSKNGYQGKF
                     IIRISDVESYNERLMSVAKPKYVWVDYSQFSNFDIQNYREFIYGIKPKLGQVEPILVS
                     PELYDLSYIEFIEPIQSILPKGFSVCTKKPELWSFYV"
     gene            700..>925
                     /locus_tag="ACJFEZ_001858"
     CDS             700..>925
                     /locus_tag="ACJFEZ_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HGG0917938.1"
                     /translation="MFNLKNIAEKYKLVMVDVDNTLFNYTFAHKNALEAVMDQYGFTL
                     QEYNLAKMMIKKRNLSANHHKKELYFKIICE"
BASE COUNT          356 a           98 c          150 g          321 t
ORIGIN      
        1 ctaggtgaag ctttgatcag agcaaataat aattggtatg ggggggggta tatcaaatta
       61 ttgcttgaga ttaggaagct aaaaagagaa ttttatacaa aaaaggatat gagatgatat
      121 tcttacatcg ccaaaataat ttagagtttt ctattgaaaa ttatggtata gaaattgatt
      181 tgagatacaa tgaaaattta gtattaaacc atgatctatt agaaaaaaat tctctatacc
      241 ccttttttga agaaaaaatt caatttatga aaaatattcc tattatttgt aatataaaag
      301 aatcaggatt agaagaaagg gtcatagaat tacttggcga taattttgaa tattattttt
      361 tagactctca aattccagat attttaaggt tatcaaaaaa tggatatcaa ggtaaattta
      421 tcattagaat ttcggatgtt gagtcttata atgaaagact tatgagtgtt gccaaaccta
      481 aatatgtttg ggtagattat tcacaatttt ctaatttcga tattcaaaat tatcgagaat
      541 ttatttacgg tatcaaacca aagctagggc aggttgagcc catattagtt tctccagagc
      601 tgtatgattt atcatatata gagtttatag agcctattca aagtattcta ccaaaagggt
      661 tttctgtatg caccaaaaaa cctgaattat ggagttttta tgtttaattt aaaaaatata
      721 gcagaaaaat ataagcttgt tatggttgat gttgataata ctttatttaa ttatactttt
      781 gcacataaaa atgctttaga agctgtaatg gatcaatatg gttttacact gcaagagtat
      841 aatctagcaa aaatgatgat taaaaaaaga aatttatcag caaaccatca taaaaaagaa
      901 ttatatttca aaattatttg tgaga
//
LOCUS       DBBXRO010000218          922 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.219, whole genome shotgun sequence.
ACCESSION   DBBXRO010000218 DBBXRO010000000
VERSION     DBBXRO010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.219"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            35..721
                     /locus_tag="ACJFEZ_001859"
     CDS             35..721
                     /locus_tag="ACJFEZ_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0917939.1"
                     /translation="MIISIVNEKGGSGKTTLAVNLSARLAEDGDNVLLIDADPQKSTE
                     VFSDMRSQSNLEPLFSNVSKTGISLGDEIKRMKNAFDSIIVDTGGRDSKEMRKAILSS
                     NIIIIPTIPSQYDVNVLDHMLEIYNEVIEINPNLLALVLVNRVSPNPFLAKELENLKE
                     YINEAKKEKGLDRVIMLESVIYERQAYRKAVIEGKSMKEFCDKNDKALNDFENFYQEL
                     LKITNEKLGV"
     gene            724..>922
                     /locus_tag="ACJFEZ_001860"
     CDS             724..>922
                     /locus_tag="ACJFEZ_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917940.1"
                     /translation="MGFKKLSSEAPKNENDFVNSARGETGNAKTGNAKRNKKLMINFT
                     EEEYQILNQEAHSMGLSLNSYV"
BASE COUNT          382 a          110 c          161 g          269 t
ORIGIN      
        1 ttattttaat ttaaactaaa aacaaggttt tattatgatt atatccatag taaatgaaaa
       61 aggcgggagt ggtaaaacta cattagcagt aaatctttcc gcaagattag ccgaagatgg
      121 agacaatgtt ttacttattg acgcagatcc gcaaaaatcg actgaagttt tttcggatat
      181 gagaagtcaa tcaaatttag agcctttatt ttcaaatgtt tcgaaaacag gcattagttt
      241 aggcgatgag attaaaagaa tgaaaaatgc ttttgatagc attatagttg atacaggcgg
      301 tagggatagt aaagaaatgc gaaaagctat actttcatca aatatcatta tcattcctac
      361 aattccaagt caatacgatg ttaatgtgct agatcatatg ctagaaattt ataatgaagt
      421 gattgaaatt aatcctaatt tattggcttt ggttttagtc aatagggttt cacctaatcc
      481 ttttttagca aaagaattag aaaatttaaa agaatacatt aacgaagcta aaaaagaaaa
      541 gggcttagat agagtaataa tgcttgaaag cgtaatctat gaaagacaag cttatcgcaa
      601 agcagtaata gaaggtaaaa gcatgaaaga attttgcgat aaaaacgaca aagctttaaa
      661 tgactttgaa aacttttacc aagaactttt aaaaataaca aatgaaaaat taggagtata
      721 ataatgggat ttaaaaaact aagttcagaa gcaccaaaaa atgaaaatga ttttgttaat
      781 tctgctcgtg gagaaacagg aaatgcaaaa acaggaaatg caaaaagaaa taaaaagctt
      841 atgataaatt ttacagaaga agaataccaa attttaaatc aagaggctca ttcaatgggc
      901 ttaagcttaa attcttatgt aa
//
LOCUS       DBBXRO010000219          908 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.220, whole genome shotgun sequence.
ACCESSION   DBBXRO010000219 DBBXRO010000000
VERSION     DBBXRO010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.220"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            6..>908
                     /locus_tag="ACJFEZ_001861"
     CDS             6..>908
                     /locus_tag="ACJFEZ_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 90"
                     /protein_id="HGG0917941.1"
                     /translation="MNLKGIGISFAPRYFFQTKLHKIFNEILKYNAKELEEIRTRVKY
                     YNQINDFFTLTEREKIGKFPFKNTSYAFDAYEISKYFNDDFLWKKEFGDVKYTFKEPA
                     ICKSRPLENNTNNILLKLDKNRHFCFLKDNIKYENKKDIAIFRGAVYQKHRKEFFDSY
                     FGRTFCDIGDTSKQPSQWKKNFLNKKEQMKYKFIISLEGNDVASNLKWAMNSNSLVLA
                     PKITCETWFMEGTLKPNYHFALIDNDNLATVIEHFISHPKDALEIINNAHQYVKKFLD
                     KKKEFYIGILVLTKYFYYSGQLDLN"
BASE COUNT          374 a          101 c          124 g          309 t
ORIGIN      
        1 tatttatgaa tttaaaaggc atcggaatat cttttgcacc aagatatttt tttcaaacaa
       61 aattgcataa aattttcaat gaaattttaa aatataatgc taaagagcta gaagaaatac
      121 gaactcgggt taagtattac aatcaaataa atgatttttt tacattaaca gaaagagaaa
      181 aaataggaaa atttcctttt aaaaatactt cttatgcttt tgatgcttat gaaattagta
      241 aatactttaa tgatgatttt ttatggaaaa aagaatttgg tgatgtaaaa tatactttta
      301 aagagccggc catttgtaaa tcaagacctt tagaaaataa tacaaacaac attttattaa
      361 aacttgataa aaataggcat ttttgttttt taaaagacaa tataaaatat gaaaataaaa
      421 aagatatagc aatttttaga ggtgctgtat atcaaaaaca tagaaaagaa ttttttgatt
      481 cttattttgg tagaactttt tgtgatatag gagatacttc aaaacaacct agccaatgga
      541 aaaaaaactt tttaaacaaa aaagaacaaa tgaaatataa atttataatt tctttagagg
      601 gtaacgatgt agcaagcaac ttaaaatggg ctatgaattc taattcttta gttttagctc
      661 caaaaataac ttgcgaaact tggttcatgg aaggaacttt aaaaccaaat taccattttg
      721 ctttaattga taatgataac ttagctacag taatcgaaca ttttatcagt catccaaaag
      781 atgcgctaga aatcattaat aatgctcatc agtatgttaa gaaattctta gataagaaaa
      841 aagaatttta tatagggatt ttagttttga ctaaatattt ttactattct gggcaactcg
      901 atcttaac
//
LOCUS       DBBXRO010000220          901 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.221, whole genome shotgun sequence.
ACCESSION   DBBXRO010000220 DBBXRO010000000
VERSION     DBBXRO010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.221"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>901
                     /locus_tag="ACJFEZ_001862"
     CDS             <1..>901
                     /locus_tag="ACJFEZ_001862"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016145.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HGG0917942.1"
                     /translation="CLFKYLYIPGIKAYNLGDYIQTIATRSLIELIDKNAKFHFYNRD
                     SFSLYNKKESICIMQGWFADDYNFLPNERIFPVYIGTHFTKKMQEYFDVLNVDFKDFE
                     IGCRDLSTLDYFNKKGANAYFSRCLTLTLPKREVSAKQNSIFLVNLNHEMSSLLPDFI
                     KKEAIEINQKAIKIKNRNLKNEWQECYKEAQDILEKYASEAKLVITTALHCAAPCIAL
                     GIPVILLQEDKVYEDRFSALKGILKPYTFNDLKDNRIDFEPKILDIEFLKEMMIKNLK
                     LTLKKHMFTLNKDEEKELNSIRNK"
BASE COUNT          353 a           94 c          143 g          311 t
ORIGIN      
        1 tgtcttttta aatacttgta tattcccggg attaaagcat ataacttagg agattatatt
       61 cagacaattg ctacaagaag tctcatagag ctaattgata aaaatgcaaa atttcatttt
      121 tacaatagag atagttttag tctttataat aaaaaagaaa gtatatgtat tatgcaaggt
      181 tggtttgcgg atgattataa ttttttgcct aatgagcgaa tttttccagt ttatataggg
      241 actcatttca ctaaaaaaat gcaagagtat tttgatgttt taaatgttga ttttaaagat
      301 tttgaaatag gatgtagaga tttatctact ttagattatt tcaataagaa aggtgcaaat
      361 gcttattttt ctaggtgttt aactttgact ttaccgaaaa gagaagttag tgcaaagcaa
      421 aattctatat ttttggttaa tttaaatcat gaaatgagtt ccttgcttcc cgattttatt
      481 aaaaaggagg caatagaaat taatcaaaaa gctataaaaa ttaaaaacag aaatcttaaa
      541 aatgaatggc aagaatgcta taaagaagct caagatattt tagaaaaata tgcatcagag
      601 gcaaaactgg ttataaccac agctcttcat tgtgcagcgc cttgtatagc cttaggaatt
      661 cctgttatct tgttgcaaga agataaagtt tatgaagata gattttcagc gttaaagggt
      721 attttaaaac cttatacttt taatgatttg aaagacaatc gaattgactt tgaaccaaaa
      781 attcttgata ttgaattttt aaaagaaatg atgattaaaa atttaaaatt gactttaaaa
      841 aaacatatgt ttactttaaa caaagatgaa gaaaaagaat taaatagtat tagaaataaa
      901 a
//
LOCUS       DBBXRO010000221          890 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.222, whole genome shotgun sequence.
ACCESSION   DBBXRO010000221 DBBXRO010000000
VERSION     DBBXRO010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.222"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..887)
                     /locus_tag="ACJFEZ_001863"
     CDS             complement(<1..887)
                     /locus_tag="ACJFEZ_001863"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HGG0917943.1"
                     /translation="MRGYKIFSGSANVEFAKQISKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCVPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIEAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKTKHF
                     KNAIVGSPDIGGVARARSVAKNLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKNKGAKSVMACCTHAVLSGKAYERIASGALDELVVTDTIPLR
                     EQLPNIKVLSVAPVFAEVIR"
BASE COUNT          286 a          194 c          124 g          286 t
ORIGIN      
        1 cgtattactt cagcaaatac aggagctacg cttaaaactt ttatattagg caattgctct
       61 cttaaaggaa tggtatcagt aactacaagc tcatcgagcg cccctgaagc aattctttca
      121 taagctttac cacttaaaac cgcgtgagta caacaagcca taacggattt tgcacctttg
      181 ttttttaaag cttcagcagc ctttacaata gtacctgcag tatcaataat atcatcgact
      241 aaaatcacct ctttatcttt aacatctccg ataatattca taacttcgct ctcattagct
      301 ttttcgcgtc ttttatctac tatcactata tcaagtccta aatttttagc cacacttcta
      361 gctcttgcta caccccctat atcaggactt ccaacaattg catttttaaa atgcttggtt
      421 ttgatataat cattaaatac tatacttcca taaagattat caacaggtat atcaaaaaaa
      481 ccttgaattt gccccgcgtg tagatcgata gtagccacac gatcaatccc tgctgcttcg
      541 attaaattgg caacaagttt agcagtaata ggtacccttg gatttgcttt tctatcttgt
      601 cttgcataac caaaataagg aataatagct gtaatagaat ttgcacttga gcgtcgcaaa
      661 gcatctgtta agattaaaag ctccattaaa ttatcattgg taggtacaca ggtgctttgg
      721 ataatgaaaa catctttacc acgtacgctt tcatcaattt gaacgctaat ttctccatcg
      781 ctaaaacgct ttactccagc atcacttaaa ggcaaagaaa gatatttaga aatctgtttt
      841 gcaaattcta cattagccga acctgaaaaa attttataac cgcgcataaa
//
LOCUS       DBBXRO010000222          890 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.223, whole genome shotgun sequence.
ACCESSION   DBBXRO010000222 DBBXRO010000000
VERSION     DBBXRO010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.223"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>890
                     /locus_tag="ACJFEZ_001864"
     CDS             <1..>890
                     /locus_tag="ACJFEZ_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HGG0917944.1"
                     /translation="EFKNRCYFMDSKFGYDEDENKKAKLNFSNARFQDNVYFNNSHFY
                     DYVDFHECEFEKITCFYGVKFYKTPNFSACYFKEPKAVNLINVDIDKLDFKSVEKYIE
                     DNYKDESYKNETKGMQDKKEFFKIKNKHKLRYAKNLKDSFRVIKDVLITQNNTLEAQE
                     WHKLELYAKEKENHINLSVKDREKNADIFKNILIWFNCVLLNVYRNTSDHHNDFLKIL
                     NFTVGMIVLYGVFIFFCQACIEPYSKFFNELKSSVIFIIIGILVFLCWIMFYFNRKKS
                     IFAKSIFFIIAMVFIVLYLV"
BASE COUNT          342 a           80 c          136 g          332 t
ORIGIN      
        1 tgaatttaaa aatcgctgtt attttatgga ttctaaattt ggatatgatg aagatgaaaa
       61 taaaaaagca aaattaaatt tttcaaacgc tcgttttcaa gacaatgtct attttaataa
      121 ttctcatttt tatgattatg ttgattttca cgagtgtgaa tttgaaaaaa tcacttgttt
      181 ttatggagtg aagttttata aaactccgaa ttttagcgct tgttatttta aagaaccaaa
      241 agctgtaaat ttaatcaatg tcgatataga taagctagat tttaaatcag tggagaaata
      301 tatagaagat aattataaag atgaaagtta caaaaacgaa accaaaggaa tgcaagataa
      361 aaaagagttt tttaaaatta aaaataaaca taaattaaga tatgctaaaa atttaaaaga
      421 ttctttcagg gttataaaag atgttttaat cactcaaaat aataccttag aagctcaaga
      481 atggcacaag ttagagcttt atgcgaaaga gaaagaaaat catataaatt taagcgtcaa
      541 agacagagaa aaaaatgctg atatatttaa gaatatatta atatggttta attgtgtttt
      601 gttaaatgtg tatagaaata ctagcgatca tcataatgat tttttaaaaa ttttaaattt
      661 tactgtgggg atgattgttt tatatggggt gtttattttc ttttgtcaag cttgtataga
      721 accttatagt aaatttttta acgaattgaa atcgagcgtt atctttatta tcatcggtat
      781 attagttttt ctttgctgga tcatgtttta ttttaataga aaaaaaagca tttttgcaaa
      841 atcaatattt tttattattg ctatggtgtt tatagtctta tatctcgtaa
//
LOCUS       DBBXRO010000223          887 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.224, whole genome shotgun sequence.
ACCESSION   DBBXRO010000223 DBBXRO010000000
VERSION     DBBXRO010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.224"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..426)
                     /locus_tag="ACJFEZ_001865"
     CDS             complement(<1..426)
                     /locus_tag="ACJFEZ_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917945.1"
                     /translation="MVHEIQKTFLLPDATLLEKLQKDGIVFEIYEIETFYTKITYFYD
                     VKFQNLNGNFYKITRLNNPILEQNQEEKISKKDYEKARKKLIEKSIKKKRYEFKLCSF
                     KSLIDVYEDFNLYVLKVFFPTLEMANLFTPPKEFRIQREL"
     gene            complement(472..882)
                     /gene="perR"
                     /locus_tag="ACJFEZ_001866"
     CDS             complement(472..882)
                     /gene="perR"
                     /locus_tag="ACJFEZ_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HGG0917946.1"
                     /translation="MELLQILKKHELKATPQRLCVLKILKRHEHPNIEELYEEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVANQKTCYDIYEERHIHIICNKCGNIEDMSFQD
                     AELDEYQEKLEKKMGNIIDHLAVCAHVSTCKKCH"
BASE COUNT          278 a          129 c          109 g          371 t
ORIGIN      
        1 aagctctctt tgaattctaa attctttagg tggtgtgaaa agatttgcca tctctaaagt
       61 cggaaaaaaa acctttaaaa catacaaatt aaaatcctca tatacatcaa taaggctttt
      121 aaaagaacaa agtttaaatt catagcgttt tttcttgatg cttttttcta tgagtttttt
      181 acgagctttt tcataatcct ttttagaaat cttttcttct tgattttgct ctaaaatcgg
      241 gttatttaat cgggttattt tataaaaatt tccatttaaa ttttgaaatt ttacatcata
      301 aaaatatgtt atcttagtat agaatgtttc aatttcataa atttcaaaaa caattccatc
      361 tttttgtaat ttttctaaaa gagtagcatc aggaagtaaa aaagtcttct gaatttcatg
      421 aaccattaaa ataaccctta aattctttgg gttattttaa ctttattttg cttaatggca
      481 ctttttacaa gtgctaacat gagcacaaac tgctaaatga tcgatgatat ttcccatttt
      541 tttctctaat ttttcttgat attcatcaag ttcagcatct tgaaaactca tatcttcgat
      601 attgccacat ttgttgcaaa ttatatgtat atgtctttct tcatagatat cataacaagt
      661 tttttgattt gctacattga tttctacaac taagccttgt tcttgtaaag tgttaagatt
      721 tttataaact gtagcaagag aaatggaagg gtattctttt ttgatttcct cataaagctc
      781 ttcgatattt ggatgttcat gtctttttaa aatttttaaa acacacaatc tttgtggggt
      841 tgccttcaat tcatgttttt taagtatttg taacaattcc attcttt
//
LOCUS       DBBXRO010000224          874 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.225, whole genome shotgun sequence.
ACCESSION   DBBXRO010000224 DBBXRO010000000
VERSION     DBBXRO010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.225"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            32..457
                     /gene="rplM"
                     /locus_tag="ACJFEZ_001867"
     CDS             32..457
                     /gene="rplM"
                     /locus_tag="ACJFEZ_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HGG0917947.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            460..849
                     /gene="rpsI"
                     /locus_tag="ACJFEZ_001868"
     CDS             460..849
                     /gene="rpsI"
                     /locus_tag="ACJFEZ_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HGG0917948.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGIDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
BASE COUNT          326 a          133 c          179 g          236 t
ORIGIN      
        1 ttttaaaaaa tttttggcaa aggtaaaaat tatgacaaag ataacaaagc caaacgaagt
       61 taaacgagaa tggattgttt tagacgcaga aggcaaacgc tttggtcgtc ttttaactga
      121 agtagcaaca attttaagag gtaaaaacaa accttgcttt actcctaatg ttgattgtgg
      181 tgattatgtg attatcatca atgcttcaaa agctgtattt acaggtgcaa ataaagcaga
      241 agataagctt tatcacagac attcaggata ttttggaagc gtaaaaagcg aaaaattcgg
      301 agatttactt gaaaaaaatc ctgcaaaatt atataaatta gcagttagag gtatgcttcc
      361 taaaacaaat ttgggtagag cgatgcttaa aaaattaaaa atttatgcgg gtagtgagca
      421 cccacacact gcgcaaattg ctaaagaagg aaaataatca tggcaacaac atatgcaaca
      481 ggtaaaagaa aaactgctat agcaaaagta tgggtaaaac caggtagcgg taaaatcagc
      541 gttaatggta tcgatttaaa tacttggctt ggtggacatg aagcgatcaa acttaaagta
      601 gttcagcctt tacttgtaac taagcaagaa acttcaatgg atatcaaagc aacgacttta
      661 ggtggtggtt atagtgctca agcagaagct ttaagacacg gaatttcaag agctttagcg
      721 gctatggatg ctgattttag agctttatta aaacctaaag gacttcttac tagagatagc
      781 agaactgttg agcgtaaaaa atatggacgc cgcaaagcaa gaagaagccc acaattctct
      841 aaacgttaat ctttggcggg attttcccgc tttt
//
LOCUS       DBBXRO010000225          869 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.226, whole genome shotgun sequence.
ACCESSION   DBBXRO010000225 DBBXRO010000000
VERSION     DBBXRO010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.226"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(43..753)
                     /locus_tag="ACJFEZ_001869"
     CDS             complement(43..753)
                     /locus_tag="ACJFEZ_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0917949.1"
                     /translation="MNLWDKKAKSYARYNQKLNSIQEQSFKELEKLNISFKDKKIIDI
                     GCGTGVWTLYLAQNAKETTALDNAKAMLEILKEDANKLQLTNIKYENCTFTEWINKNQ
                     NAQFDIAFLSMSPALQDKKDYLNFMRLAKIRIYLGWADYRKSDFLDPIFKHFNTEFKG
                     IYKQDLESYLLENNVKFHKFIFDETRIVERKKDEAIENTLWHLNMNGVKASKQDLETF
                     VKGDIKETIQSKIKLLVF"
BASE COUNT          274 a          133 c          105 g          357 t
ORIGIN      
        1 aagattatat atctacctta agatagaatt ttatctcaag gattaaaaaa ccaaaagttt
       61 gatttttgat tgtatggttt ctttgatatc gcctttcaca aaagtttcta aatcttgctt
      121 agaagcttta actccattca tatttaaatg ccacaaggta ttttctatgg cttcatcttt
      181 ttttctttct actatgcgtg tttcatcaaa gataaattta tgaaatttca cattattttc
      241 taacaaataa ctttccaaat cttgtttata aataccctta aattctgtat taaaatgttt
      301 aaatatagga tctaaaaaat cactctttct ataatcggcc cagccaagat aaattcgaat
      361 tttagccaat cgcataaagt ttaaatagtc ttttttgtct tgcaaagcag gggacatact
      421 taaaaatgct atgtcaaatt gagcgttttg atttttattt atccattctg taaaagtgca
      481 attttcgtat ttgatatttg ttagttggag cttgttagca tcttctttta aaatttctaa
      541 catagctttt gcattatcaa gagcagtggt ttcttttgca ttttgtgcta agtacaaagt
      601 ccatactcct gtgccacaac ctatatctat aatcttttta tctttaaagc ttatatttag
      661 tttttctaat tctttaaaac tttgctcttg tatggaattg agtttttgat tgtatcttgc
      721 gtagctctta gcttttttat cccaaagatt cattgatagt ccttattttt aaatcaataa
      781 aatcatagca taaaaaaata ctaaattatt aaattatcta tttgtaaatt ctactaacac
      841 ctagttcaaa ctaggtgtta gtgaacaat
//
LOCUS       DBBXRO010000226          827 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.227, whole genome shotgun sequence.
ACCESSION   DBBXRO010000226 DBBXRO010000000
VERSION     DBBXRO010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.227"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>827
                     /gene="yibB"
                     /locus_tag="ACJFEZ_001870"
     CDS             <1..>827
                     /gene="yibB"
                     /locus_tag="ACJFEZ_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein YibB"
                     /protein_id="HGG0917950.1"
                     /translation="EITIVTAFYNVGRTTRSNEQYLSYFDFWAGLKNKVIIYTTDDMK
                     EAILEIRKKHNLEDKTIIITKDLKEFDKENFEKIQETFNNYDQSLNRKHPKNIECNNA
                     MYCYLMYLKPFFVVDAIEKKLSSENIIWLDFGFNHRDEFFTNKAEFNFLLEKPKNIND
                     KKINFFSIKNEEKNTIPAIYYNMEIFITGSIFYGNINSWKIFKQDFEKCLNCFLSFNI
                     VDDDQIMLLWCTRNNPDNYKIIRTYEWFGSLLSFIPDDIKSHLTFKRKNSKYYKTIK"
BASE COUNT          350 a           90 c          108 g          279 t
ORIGIN      
        1 aagaaataac cattgttacc gctttttata atgtaggcag aaccacaaga agcaatgaac
       61 aatatttgtc ttacttcgat ttttgggcag gcttaaagaa taaggtaatt atttacacta
      121 cagatgatat gaaagaagct attttagaaa ttagaaaaaa acataattta gaagataaaa
      181 ctataatcat tacaaaagat ttaaaagaat ttgacaaaga aaattttgaa aaaatccaag
      241 aaacctttaa taactatgat caaagtttaa atagaaaaca tccaaaaaac attgagtgca
      301 ataatgcaat gtattgttat ttaatgtatt taaaaccttt ttttgtagtt gatgctatag
      361 aaaaaaaatt aagcagtgaa aatataatat ggcttgattt tggttttaat cacagagatg
      421 aattttttac caataaagca gaatttaatt ttttactaga aaaaccaaaa aacataaatg
      481 acaaaaaaat taattttttc tcaattaaaa atgaagagaa aaatactatt ccagcaattt
      541 attacaatat ggaaattttt ataacaggaa gtatttttta tggcaatatc aattcttgga
      601 agattttcaa gcaagatttt gaaaaatgtt taaattgttt cttatctttt aatattgtag
      661 atgatgatca aattatgctt ttgtggtgca caagaaataa tccagataat tataaaatta
      721 ttagaactta tgaatggttt ggctcgttgc tttcttttat tcctgatgat attaaatcac
      781 atttaacctt caaaagaaag aacagtaaat actacaaaac cattaaa
//
LOCUS       DBBXRO010000227          810 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.228, whole genome shotgun sequence.
ACCESSION   DBBXRO010000227 DBBXRO010000000
VERSION     DBBXRO010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.228"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(135..488)
                     /locus_tag="ACJFEZ_001871"
     CDS             complement(135..488)
                     /locus_tag="ACJFEZ_001871"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion protein VgrG"
                     /protein_id="HGG0917951.1"
                     /translation="MKGENKLLIEKSLTQTIEKEFFLNVHQNLSAHIQDNTSLKSNSM
                     QTKIEEQYSLESDNSTFDFQTDCEVKAGNQILHQVGDTQIVTKKDCVIIKAGGVEAFI
                     DSNGLVVKGGELKAE"
BASE COUNT          242 a          138 c           92 g          338 t
ORIGIN      
        1 cataaaaata caatatatgt tatccaataa agcaaaaacg aaggtatatc cttttttcct
       61 tcccaaatga tttcatcttg agtgtcttgt tctttgattt ctgtgttgtt attcgtttgg
      121 ctcattttta tcctttactc tgctttaagc tctccacctt taaccacaag tccattagag
      181 tctataaacg cttctactcc acctgcttta ataataacac aatctttctt agtaacaatt
      241 tgagtatcac ctacttgatg gaggatttga ttacctgcct ttacttcaca atctgtttga
      301 aagtcaaaag ttgaattgtc tgattctaaa gaatattgct cttctatctt tgtttgcatg
      361 gaattagact ttaaagatgt gttatcttgt atatgggcgg ataaattttg atgaacatta
      421 aggaaaaatt ctttttctat tgtttgggtt aaagactttt ctattaataa tttattttct
      481 cccttcacat tccttatctc atctttatgg ataatagtat tttgatttgc acctatttct
      541 atgtctttgt tttctcctac aaactcatga gagtttttag ctattcttac tttattatct
      601 actcctacat ttaaagtatt gcttaatcct actaattttt caaaagcgga aattcctata
      661 ccacctaacc gataaaatgg atatttttaa ttatttaagc ctttaatact tttttattaa
      721 aaaatataga aaaaccctta aatacaaaat ctattcattg tttttagttt ttaaattaac
      781 caatctatag cttaattgtt tttgaaacaa
//
LOCUS       DBBXRO010000228          792 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.229, whole genome shotgun sequence.
ACCESSION   DBBXRO010000228 DBBXRO010000000
VERSION     DBBXRO010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.229"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..750)
                     /locus_tag="ACJFEZ_001872"
     CDS             complement(<1..750)
                     /locus_tag="ACJFEZ_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0917952.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDLKAIVFVI
                     GGYGANANIYFLDSYRNYIAKNFDVVTINVFYHCFCQRRSDVEKYSAYKYFQEEDIEN
                     IKNLLNQFHFSYGEINNDNALFLANSLVKHVENLKMQNKLDHNFKLNFTSTFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPEFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGSALPPLNYILGREMEHSYGDYYEDFPHN"
BASE COUNT          279 a          135 c           91 g          287 t
ORIGIN      
        1 attatgtgga aaatcttcat aataatcacc gtaactatgt tccatttctc ttcctaaaat
       61 ataatttaaa ggtggcaaag ccgaacccga attatcaatc acaccatcca cataccaagg
      121 agctattttt gctatgagta aagataggta tcctccataa gacccccccc cataaatttt
      181 tggtaaatct gcaaattctg gaaaacgttt aactaaatct tttaaagcat tgatatgatc
      241 aatagctgcc ataatgccat agttttgata atctccatta ggcgggataa aagttgaagt
      301 aaaatttagt ttaaagttat gatcgagttt attttgcatt tttaaatttt ctacatgttt
      361 cactaaagaa ttcgctaaaa aaagcgcatt atcattattt atttcaccat aagaaaaatg
      421 aaactgattt aataaatttt taatattttc aatatcttcc tcttgaaaat atttgtatgc
      481 actatatttc tcaacatctg aacgcctttg gcaaaaacaa tgataaaaaa catttattgt
      541 cactacatca aaatttttag caatataatt tctataagaa tctaaaaaat atatatttgc
      601 attagctcca taacctccta tgacaaaaac tatagctttg agatcttttt catcatcata
      661 acttatacgg tattcaagct tgctagttct tttaatgcct agttctacat catcacaaga
      721 atcaatttca aaggtttggt ttatgagcat atattttcct ttttaattaa tgatcaattt
      781 taactgattt tc
//
LOCUS       DBBXRO010000229          776 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.230, whole genome shotgun sequence.
ACCESSION   DBBXRO010000229 DBBXRO010000000
VERSION     DBBXRO010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.230"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
BASE COUNT          403 a          139 c           50 g          184 t
ORIGIN      
        1 attaaaattc atttattaaa caacatacct tgataaaaat ttatctcaag tataacattc
       61 attctcgcca acaagaataa acaatcatag tctatccacc ctaacccaac attaacccct
      121 aacccaacca agaagtgtat acctcccaac cataaaacct caataaacac tataaaataa
      181 acttgagtga ttaaaaatcc aacccaatta ttgaacaaac ccaagctaca taataaaata
      241 taaactagac atataaagaa caattgacac ataaaaatag attgaataaa taaacctata
      301 caagtaaaca taaagattaa ttattgatac aaaagattta ataaataaaa agaataattg
      361 agatataaaa acatataaac taaacaactc aaacaaccat taaatcaacc caaactaata
      421 aacaaccata gctaagctga caacccaacc aatcaattta aatataaaac tacaaattaa
      481 atcaacccaa gctaattaaa cttcaaacta attaatcaaa caaaccaatg aatataacct
      541 aactgattaa attaaataaa ttaataaact aatcaagcaa tgactaataa agtatttaaa
      601 accaacaaaa gcataaatca attaaactaa tgattgaata taaaaataat aagttgtaga
      661 taagtaaaag cattatacaa agcattctaa gctgattaaa tacaattaga acaaaagcat
      721 aaatcaatcc aagccaatta aacataaaca taaacataaa agaacaatga atacaa
//
LOCUS       DBBXRO010000230          766 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.231, whole genome shotgun sequence.
ACCESSION   DBBXRO010000230 DBBXRO010000000
VERSION     DBBXRO010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.231"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..742)
                     /locus_tag="ACJFEZ_001873"
     CDS             complement(<1..742)
                     /locus_tag="ACJFEZ_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HGG0917953.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVF"
BASE COUNT          252 a          153 c           89 g          272 t
ORIGIN      
        1 taaaaacttc tttaatgtct tttaaatact tattgcccaa aaaatctaaa aagccatttt
       61 tcctactctc atcaatgaaa ttatcaagct tgtcctttaa agcttcatca ccttttctta
      121 ctgctatacc ccaaaactca ggattttctt gaaaaggtgc taaaatggct ctggttgtat
      181 cttgatgctt ttgccaagtc cgataaatcg taagttgatc ataaaaaaat ccatcagcct
      241 tgccttgaat cacttccaaa atagcagcat tttctttatc aaataaatta atagttgcat
      301 tttttaaatt tttaaccgca tataaatgcc ctgtagaacc acgctttaaa gccaaaactt
      361 tgcccttttt atctaaatct ttgatatttg taatatcaga gttcaaagga gttaaaatag
      421 ccaaatttgc cttagcataa ggaatgctaa aatccaccac tttctttctc tcatcggtaa
      481 ttgtcataga ggacataata agatctatct tggctgtttt taaagcaggt attaaaccat
      541 cccaagcgat attttttact acaagtttat agccgttttt ctttgcaaaa gcttctaaaa
      601 aatccacgct aattccactt gctttgcctg ttttatcgct catttcaaaa ggcggatatc
      661 caagctccat tcctacaacc aaatcttttg cactcaaatt taaagcaaaa aaagagataa
      721 aaatcaaaat aatttttttc ataatttcct ttcaaatttt tttgta
//
LOCUS       DBBXRO010000231          754 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.232, whole genome shotgun sequence.
ACCESSION   DBBXRO010000231 DBBXRO010000000
VERSION     DBBXRO010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.232"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>754
                     /locus_tag="ACJFEZ_001874"
     CDS             <1..>754
                     /locus_tag="ACJFEZ_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HGG0917954.1"
                     /translation="ELFILALSTIDLSEELKVYKVILFDCVAKDLEIQIAMIFDQQSI
                     LEYLSLYEMFISSHYYLKYYETSILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQ
                     NIPSMLESIPFQRILSQRKNKFDNAIVVSAGPSLTKQLPLLKAYQDKAVIFCADGALS
                     MLEKEGIVPDYVTNLDFTDLAMKFFQNKENLKQSIIALECATHPNIVRSLNAENCMIV
                     LRNKALYQRFNLNDFGYIDTGTHVSHFSYTLA"
BASE COUNT          250 a          103 c          120 g          281 t
ORIGIN      
        1 tagaactttt tatcctagct ttaagcacga tagatttgag tgaagagttg aaagtttata
       61 aggttatatt atttgactgt gttgcaaagg atttagaaat tcaaattgct atgatttttg
      121 atcagcaaag tattttagag tatttaagtt tatatgaaat gtttattagc tcgcattatt
      181 atcttaaata ctatgaaact tctattttat ctttaaatga actttgtatt aaaagtgcaa
      241 gtgtagcaat aaggaatgca gatattactt gttttttacc tttgctaaca catggacagt
      301 ttttacaaaa catcccttct atgcttgaaa gcattccttt tcaaagaatc ttaagccaaa
      361 gaaaaaacaa atttgataat gctatagtag tttctgcagg accttctctt actaaacaac
      421 ttcctttact taaagcttat caagataaag cagtgatatt ttgtgctgat ggggctttaa
      481 gcatgcttga aaaagaaggc atagtgcctg attatgttac gaatttagat tttactgatc
      541 tagcaatgaa attttttcaa aataaagaaa atttaaaaca aagcatcatt gctcttgagt
      601 gtgctacgca tcctaatatc gtgcgtagtt taaatgctga aaattgtatg attgttttaa
      661 gaaataaagc cctttatcaa cgctttaatc ttaatgactt tggttatata gatacgggta
      721 ctcatgtaag tcatttttct tataccttag cttt
//
LOCUS       DBBXRO010000232          730 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.233, whole genome shotgun sequence.
ACCESSION   DBBXRO010000232 DBBXRO010000000
VERSION     DBBXRO010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.233"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>730)
                     /locus_tag="ACJFEZ_001875"
     CDS             complement(<1..>730)
                     /locus_tag="ACJFEZ_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HGG0917955.1"
                     /translation="KDMEIFLDLLNTQSPTNTANNFSITQPNVSIIIKNLEQDLGGAL
                     FERLGKKLLPTPKALYLGKIWLKLVQDYYKSLEELNDENTLLGEIKIAATQSIAEHFL
                     APILFDFKSKFSNVKIHFQTQNSKECLNLLKNGDIEFAIVEAELNPTLIDHEGLKMEF
                     WQKDELVVASSNKNLSQKEFYIDELLKQKWILRETGSGLRDKFLNEIGDVSKKLKFFL
                     ELDRMSAIKELVIQKNAISIFSKKS"
BASE COUNT          236 a          107 c          105 g          282 t
ORIGIN      
        1 acttttttta gaaaaaatag aaatagcatt tttttggata acgagttctt taatagcaga
       61 cattctatcg agctctaaaa agaatttaag ttttttggaa acatcgccta tttcgtttag
      121 aaatttatct ctaagccctg agcctgtttc acgcaaaatc catttttgtt taagtaattc
      181 atcgatataa aattcttttt ggcttaaatt tttattacta ctagcaacta caagttcatc
      241 tttttgccaa aattccattt ttaacccttc gtgatcgatt aaagtaggat taagttctgc
      301 ttcaacaatg gcaaattcta tatctccatt ttttaataaa tttaaacatt cttttgaatt
      361 ttgagtttga aaatgtattt taacattgct aaatttagat ttaaaatcaa ataaaatagg
      421 agcaagaaag tgttcagcta tgctttgagt agcagcgatc ttgatttctc ctaagagggt
      481 attttcatca ttaagttctt ctaagctttt gtaataatct tgcacaagtt ttagccaaat
      541 tttacccaaa tataaagctt ttggagtagg taaaagcttt tttcctagtc tttcaaacaa
      601 tgctccgcct aagtcctgct ctaaattttt aataatgatg gaaacattag gttgtgtgat
      661 ggaaaaatta ttggcggtat ttgtaggact ttgagtattt aaaagatcta aaaaaatttc
      721 catatctttg
//
LOCUS       DBBXRO010000233          730 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.234, whole genome shotgun sequence.
ACCESSION   DBBXRO010000233 DBBXRO010000000
VERSION     DBBXRO010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.234"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>730
                     /locus_tag="ACJFEZ_001876"
     CDS             <1..>730
                     /locus_tag="ACJFEZ_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HGG0917956.1"
                     /translation="IMIGQDLAFDEEGNSHSKGFDFGEKFSGEENIDKLKVPAYAGKG
                     EVLTHTTWNDYRIKLEYLFACNDQKAKFYNATEGGARINFTEELSFKECCEKLLTKEK
                     PKFELPKSLTKNRSDKLLVKFKEKIQKDQENAKRFLDDALALKQILENILSKDFLLPL
                     EFLEKVYQNIENFNHSLDEDEFIQDGILKAVMYERGLKISLVYKKNIVDNASFITAYI
                     KAYHEWLLYFMEKLEQKINIIINFP"
BASE COUNT          298 a           84 c          115 g          233 t
ORIGIN      
        1 atcatgatag gacaagattt agcctttgat gaagaaggaa attcacactc aaaaggtttt
       61 gattttggag agaaatttag tggtgaagaa aatatagata aacttaaagt ccctgcctat
      121 gcaggtaaag gtgaagtttt aacccataca acttggaatg attatcgtat aaaacttgaa
      181 tatctttttg cttgcaatga tcaaaaggct aaattttaca atgctactga aggtggagca
      241 aggattaatt tcactgaaga actttctttt aaagaatgtt gtgaaaaact ccttacaaaa
      301 gaaaaaccca aatttgaact tccaaaaagt ttaactaaaa atagaagtga taaactccta
      361 gttaaattca aagaaaaaat acaaaaagat caagaaaatg ctaaaagatt tttagacgat
      421 gctttagctt taaaacaaat tttagaaaat atactcagta aagattttct tttaccttta
      481 gaatttttag aaaaagtcta tcaaaacata gaaaatttta atcactcttt agatgaagat
      541 gagtttatac aggatggtat tttaaaagca gtgatgtatg agcgaggact taagataagt
      601 ttagtttata aaaaaaatat tgtagataat gctagtttca tcacagctta tattaaagct
      661 taccatgaat ggttgcttta ttttatggaa aagttagaac aaaaaataaa tattattata
      721 aattttccta
//
LOCUS       DBBXRO010000234          719 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.235, whole genome shotgun sequence.
ACCESSION   DBBXRO010000234 DBBXRO010000000
VERSION     DBBXRO010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.235"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>719)
                     /locus_tag="ACJFEZ_001877"
     CDS             complement(<1..>719)
                     /locus_tag="ACJFEZ_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917957.1"
                     /translation="SILAIIFSACSTHQEQNVFYQQNLFSQTCNKQFFQEQQEKISQN
                     KDVIFTGLNTGYIARDCKDFNLSNSIFDKVEDSYKYDVDLQSLSKKSTRALASTLINE
                     GVNDYQGAWYERTMLNVYKGLNFMSLGDFVNARVEFNRALMRQEKAKEYFASEIKKAY
                     QEASKEEKLRQNIDNNIKIVSKQYENLFKDFNAQKDYTNPYVTYISSIFFFMDYDYKK
                     AADLLKEVYVLNLNKEIEKEF"
BASE COUNT          236 a          120 c           81 g          282 t
ORIGIN      
        1 taaattcttt ttctatttct ttatttaaat tcagcacata aacttcttta agtaaatccg
       61 ctgctttttt ataatcataa tccataaaga aaaatataga tgaaatataa gttacataag
      121 gattggtata atctttttgt gcattaaagt ctttaaaaag attttcatat tgttttgaaa
      181 caatttttat attattatcg atattttgcc ttaatttttc ttccttgcta gcctcttgat
      241 atgctttttt aatttcggaa gcaaaatact cttttgcctt ttcttgtctc atcaatgcgc
      301 ggttaaattc caccctagca ttaacaaaat ctcccaaact cataaaattt aaccccttat
      361 aaacattaag catggttctt tcataccaag caccttgata atcatttaca ccctcattta
      421 tcaaagtaga tgcaagtgct cttgtgcttt tcttggataa actttgcaaa tccacatcgt
      481 atttataaga atcttcaacc ttatcaaaaa tagaattact taagttaaaa tccttacaat
      541 ctcttgcgat ataacctgta tttaaacctg taaaaatcac atctttattt tgactgatct
      601 tttcttgttg ctcttgaaaa aattgcttat tgcaagtttg agagaataaa ttttgttgat
      661 agaatacatt ttgttcttga tgagtagagc atgctgaaaa aattatcgct aaaatagaa
//
LOCUS       DBBXRO010000235          676 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.236, whole genome shotgun sequence.
ACCESSION   DBBXRO010000235 DBBXRO010000000
VERSION     DBBXRO010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.236"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            24..620
                     /locus_tag="ACJFEZ_001878"
     CDS             24..620
                     /locus_tag="ACJFEZ_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HGG0917958.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVEDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMIRMVDTML
                     FTNEHGEVCPAGWNKGDAGMKANPKGVAEYLDKNEDKL"
BASE COUNT          231 a          100 c          126 g          219 t
ORIGIN      
        1 aatttattaa ttaggagaaa aacatgatag ttacaaaaaa agctttagac tttactgctc
       61 cagcagtatt aggaaataac gaaatcgttg aagattttaa tctttataaa aatataggcc
      121 caaaaggtgc ggtagtattt ttctatccaa aagattttac ttttgtttgt ccttcagaaa
      181 taattgcttt tgataaaaga tatcaagaat ttaaaaatcg tggtattgaa gtaatcggaa
      241 tttcaggcga caatgaattt tcacattttg catggaaaaa cactccagta aatcaagggg
      301 gtattggtca agttaaattc ccacttgttg cagatttaac taaacaaatt gctagaaatt
      361 ttgatgtact ttatgcagaa gcagttgctc ttcgtggttc tttcttgctt gatgcagatg
      421 gaacagttcg ccacgctgta gttaatgact taccacttgg aagaaatatt gatgaaatga
      481 tcagaatggt agatactatg cttttcacta atgaacacgg tgaagtttgc cctgcaggct
      541 ggaacaaagg tgatgctggt atgaaagcta accctaaagg tgttgctgag tatcttgata
      601 aaaacgaaga taaactataa taacaagccc ttaaaaaagg gcttttcttc ttgataaaat
      661 ttcttctctt aacttt
//
LOCUS       DBBXRO010000236          668 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.237, whole genome shotgun sequence.
ACCESSION   DBBXRO010000236 DBBXRO010000000
VERSION     DBBXRO010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.237"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            27..>668
                     /gene="ung"
                     /locus_tag="ACJFEZ_001879"
     CDS             27..>668
                     /gene="ung"
                     /locus_tag="ACJFEZ_001879"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HGG0917959.1"
                     /translation="MKEITINIEDIKINNDWKEFLKEEFSKSYFLEIKKRYIQALNNK
                     AIIYPPSNLTFNAFNLTPLSELKIVLLGQDPYHQPNQAMGLSFSVPCGVKIPPSLLNI
                     YKELKADLNIEPSKSGDLSSWAKQGVLLLNSILSVEAGKPASHSSWGWQEFSDAVISK
                     LSLEKSGLIFILWGNYAKSKKALIDTKKHFILEAAHPSPLARTGFLGCKHFSKA"
BASE COUNT          236 a          101 c          107 g          224 t
ORIGIN      
        1 cctttaattt atttttggaa gtttttatga aagaaattac tataaacatt gaagatatca
       61 aaataaataa tgattggaaa gagtttttaa aagaagaatt tagcaaaagc tattttttag
      121 aaatcaaaaa acgctatata caagctttaa acaataaagc cattatctat cccccttcaa
      181 atttaacctt taatgctttt aatcttactc ctttgagcga gcttaaaatt gtacttttag
      241 gacaagatcc ttaccatcaa cccaatcaag ctatggggct tagtttttct gtgccttgtg
      301 gggttaaaat tcctcctagt cttttaaata tttataaaga attaaaagca gatcttaata
      361 tagaaccttc taaaagcggg gatttaagtt cttgggcaaa acaaggagtt ttacttttaa
      421 attccattct tagcgttgaa gcgggaaagc ctgcaagtca tagctcgtgg ggttggcaag
      481 aatttagtga tgcagtgatt tcaaagttaa gtcttgaaaa atcaggactt atttttatac
      541 tttggggaaa ttatgcaaaa tccaaaaaag ctttaatcga tacaaaaaaa cattttattt
      601 tagaagcagc acatcctagt ccactagcta gaacaggctt tttaggttgt aaacattttt
      661 caaaagct
//
LOCUS       DBBXRO010000237          594 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.238, whole genome shotgun sequence.
ACCESSION   DBBXRO010000237 DBBXRO010000000
VERSION     DBBXRO010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.238"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            6..395
                     /locus_tag="ACJFEZ_001880"
     CDS             6..395
                     /locus_tag="ACJFEZ_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HGG0917960.1"
                     /translation="MLALSLYAKDIEIKDAFIKQTPPNAVNSAIFLTIVNNTDKDISL
                     IDAKTDINQVSELHTHEHKHGMKAMIQIPEIPVKAHSSTELKPGSYHIMLFKLNQAID
                     ENTKANLTLTFDNNQSLEVRDIGSKKL"
     gene            399..>594
                     /locus_tag="ACJFEZ_001881"
     CDS             399..>594
                     /locus_tag="ACJFEZ_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917961.1"
                     /translation="MKKIFFILASGLSLLILYIIFDFYVLKDRTTLSQTEVLSPLSCD
                     LNIENCTYSFKDREVLISMDP"
BASE COUNT          213 a           87 c           88 g          206 t
ORIGIN      
        1 gcgctttgct tgcattaagt ctttatgcta aagatataga aatcaaagat gcatttatta
       61 aacaaactcc acctaatgct gttaatagtg ctatatttct taccattgtt aacaataccg
      121 ataaggacat ctctttaata gatgcaaaaa ctgatatcaa tcaagtgagc gaattacaca
      181 ctcatgaaca taaacatggt atgaaagcta tgatacaaat tcctgagata cctgttaaag
      241 cacattctag taccgagtta aaacctggaa gttatcatat tatgcttttt aagcttaatc
      301 aagctattga tgaaaatact aaagcgaatt tgactttaac ttttgacaat aatcaaagtt
      361 tagaagttcg tgacatagga tcaaaaaagt tatagataat gaaaaaaata ttttttattt
      421 tggcctcagg cctatctctt ttaattcttt atatcatatt tgatttttat gttttaaaag
      481 atagaacgac tttaagtcaa actgaggttt tatcacctct aagctgtgat ttaaatatcg
      541 aaaattgcac ttatagtttt aaggatagag aggttttgat ttctatggat ccaa
//
LOCUS       DBBXRO010000238          552 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.239, whole genome shotgun sequence.
ACCESSION   DBBXRO010000238 DBBXRO010000000
VERSION     DBBXRO010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.239"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>552
                     /locus_tag="ACJFEZ_001882"
     CDS             <1..>552
                     /locus_tag="ACJFEZ_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0917962.1"
                     /translation="IHKIFEEYKSLDFRNKLDNANGSVEVTTNALGDEIVKMLKQSSD
                     FANHLASESSKLQSAVQNLTSSSNSQAASLEETAAALEEITSSMQNVSVKTSDVITQS
                     EEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSE
                     IEANTNLLVQSINDMAESIKEQTA"
BASE COUNT          194 a           80 c          102 g          176 t
ORIGIN      
        1 tattcataag atctttgaag aatataagtc tttagacttt agaaataaac ttgataatgc
       61 taatggtagt gttgaagtta ctactaatgc tttaggagat gaaatcgtta agatgttaaa
      121 acaaagttct gactttgcta atcacttagc cagtgaaagt tcaaaacttc aaagtgcagt
      181 tcaaaacctt acttcatctt ctaattctca agcagcttct ttagaagaaa ctgcagctgc
      241 tttagaagag attacttctt ctatgcaaaa tgtttcagtt aaaaccagtg atgttatcac
      301 tcaatctgaa gagattaaga atgttacagg tattattgga gatattgcag atcaaatcaa
      361 tcttttagct ttaaatgcag ctattgaagc tgcaagagca ggagaacatg gtagaggctt
      421 tgccgttgtt gctgatgaag ttagaaagtt agctgagaga actcaaaagt ctttatcaga
      481 aatagaagct aatactaatt tattggttca atctatcaat gatatggcag aatctattaa
      541 agagcaaact gc
//
LOCUS       DBBXRO010000239          537 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.240, whole genome shotgun sequence.
ACCESSION   DBBXRO010000239 DBBXRO010000000
VERSION     DBBXRO010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.240"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..129
                     /locus_tag="ACJFEZ_001883"
     CDS             <1..129
                     /locus_tag="ACJFEZ_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0917963.1"
                     /translation="SVAQIDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
BASE COUNT          173 a           67 c           68 g          229 t
ORIGIN      
        1 agtgtagctc aaattgatca aaccactaag gataatgtag agattgctaa tgaatcagct
       61 attatttcta gtacagtaag tgatatagct aataacatac ttgaagatgt gaaaaagaaa
      121 aggttttgat tagaaattga tgtgtaaaat ttagattgat atgcaagtat caatctaaag
      181 attttgattt gttgatactt ttaacttatt atttactaac acttttaatt gcttattcat
      241 taatatcttt aattcgttat ttgttaagtt ctaggttagg tattggtttg tttttatagt
      301 tccttattta ctagtttatt ctgtatttta ttgttatatt gttgctcttg tgaattaatt
      361 tgcttatcca ttgaatttat ttctcacttc acttaaaata aatcaccttc ttgattaaat
      421 tccttactta acttcatgtt ttgcctactc gaaaaaatga ctcactttat agattgtaaa
      481 aattaatata cgctatataa ctttgttcgc ttataaattt atacatattt acaccca
//
LOCUS       DBBXRO010000240          515 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.241, whole genome shotgun sequence.
ACCESSION   DBBXRO010000240 DBBXRO010000000
VERSION     DBBXRO010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.241"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>515
                     /locus_tag="ACJFEZ_001884"
     CDS             <1..>515
                     /locus_tag="ACJFEZ_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0917964.1"
                     /translation="ARQSIDQKYNPKLIPNKDDLERINNILKNINLGHLLANEDNFEQ
                     IIPFIEQRAGEIKQAGLVDESQKIGLSCDFIPPNGDYQNFGIMAALDHINALKDLVKR
                     FPKLADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVIDNSGSALPPLNYILGREMESGC
                     DYVLNSSHILI"
BASE COUNT          178 a           68 c           99 g          170 t
ORIGIN      
        1 gcaagacaaa gtattgatca aaagtataat ccaaaactta ttccaaacaa agatgatttg
       61 gagcgtatta ataatatttt aaaaaatatt aatttgggac atttactagc taatgaagat
      121 aattttgaac aaattatccc ttttattgag caaagagctg gagaaattaa acaagcaggt
      181 ttggttgatg aaagccaaaa aataggactt tcttgtgatt ttatcccacc taatggagat
      241 tatcaaaatt ttggcattat ggcagcactt gatcatatca atgctttaaa agatttggtt
      301 aaacgctttc caaaacttgc agatttacca aaaatttatg ggggggggtc ttatggagga
      361 tacctatctt tactcatagc aaaaatagct ccttggtatg tggatggcgt gattgataat
      421 tcgggttcgg ctttgccacc tttaaattat attttaggaa gagaaatgga gagcggttgt
      481 gattatgttt taaatagttc gcatatttta ataca
//
LOCUS       DBBXRO010000241          494 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.242, whole genome shotgun sequence.
ACCESSION   DBBXRO010000241 DBBXRO010000000
VERSION     DBBXRO010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.242"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(38..493)
                     /locus_tag="ACJFEZ_001885"
     CDS             complement(38..493)
                     /locus_tag="ACJFEZ_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917965.1"
                     /translation="MVYSFFTFLLGIYAFARAIYKMANIKRIYVTKEKLVIKYHIKND
                     LVFPLGTFFIYYRKISYSPSPGHIVIHTFGDKAKEYLEPGLFSDGDDPTKGCFERINA
                     IIKPYVMPYLLGLSDEEFEKIFFHVNATSEIDTTFLREAMELRKEKKDE"
BASE COUNT          167 a           79 c           64 g          184 t
ORIGIN      
        1 taaaaaaatc aatttttcat ttccttgtgt attattttca ttcatctttt ttctcttttc
       61 tgagttccat tgcttctcta aggaaagtgg tatcaatttc actagtagcg tttacatgga
      121 aaaagatttt ttcaaattct tcatcactta agcctagcaa ataaggcatt acatagggtt
      181 ttataatggc attaattctt tcaaaacaac cttttgttgg atcatcgcca tcactgaata
      241 aaccaggttc aaggtattct ttggccttat ctccaaaggt atgtatcact atatgtcctg
      301 gagaaggtga atatgaaatt ttacgataat atataaaaaa agttcctaaa ggaaaaacca
      361 aatcattttt aatatgatac ttaatcacaa gtttttcttt tgtgacataa attcttttaa
      421 tatttgccat tttatagatc gctcgtgcaa atgcatatat gcctaaaaga aatgtaaaaa
      481 aactataaac catt
//
LOCUS       DBBXRO010000242          472 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.243, whole genome shotgun sequence.
ACCESSION   DBBXRO010000242 DBBXRO010000000
VERSION     DBBXRO010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.243"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            212..>472
                     /locus_tag="ACJFEZ_001886"
     CDS             212..>472
                     /locus_tag="ACJFEZ_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0917966.1"
                     /translation="MVSAYPKPIKIFKNTAIKVSNFPFDPNLKIKIYSLNSYIGNIIP
                     QFTNTKDSIIINFTGKSVTDDSRFRVEFLNNDKPIGFFFDFDV"
BASE COUNT          178 a           65 c           51 g          178 t
ORIGIN      
        1 ccaaatcacg aaaaaatcaa ttttaaaggc attgttttat tatcatgaaa aattttttat
       61 agcagcaata tttctgatta tattttcatc aaccttttat attttatatg ataaaaaaaa
      121 ggataatgtg tttaaactca atacctgcct tccattaaaa tgtgatttaa attctcaaga
      181 ttgcaccttt ttgtttaaag gaaaataaat tttggtatct gcttatccta aacctataaa
      241 aatctttaaa aataccgcca ttaaagtaag taattttccc tttgatccaa atttaaaaat
      301 taaaatttat agtttaaact catatatagg aaacattatc ccacaattta caaacacaaa
      361 ggattcaatt attataaatt ttacaggaaa aagtgttaca gatgattctc gctttagggt
      421 tgagttttta aacaatgata aacccatagg ctttttcttt gattttgatg tt
//
LOCUS       DBBXRO010000243          461 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.244, whole genome shotgun sequence.
ACCESSION   DBBXRO010000243 DBBXRO010000000
VERSION     DBBXRO010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.244"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>461)
                     /gene="cetC"
                     /locus_tag="ACJFEZ_001887"
     CDS             complement(<1..>461)
                     /gene="cetC"
                     /locus_tag="ACJFEZ_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HGG0917967.1"
                     /translation="LAKDALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKSHNIVR
                     HEDMPRTVFKCLWDYIQKGDEIFAFVKNKSKDGNFYWVFANVSASFDANGDIINYYSV
                     RRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIF"
BASE COUNT          165 a           74 c           56 g          166 t
ORIGIN      
        1 ttaaaaataa gttcattata agtcatttta taagaactta caatatccat taaagctgaa
       61 actccagcat taatgcctga tttttgctct ttttcaagta aaattttata aacttcttca
      121 attatagaaa gagattttct attgggtgca cgacgaacag aataataatt gatgatatct
      181 ccattagcat caaatgaagc acttacattt gcaaaaaccc agtaaaaatt accatctttg
      241 gatttatttt tcacaaatgc aaaaatttca tctccttttt gaatataatc ccaaagacat
      301 ttaaatacag tgcgtggcat atcttcatgt cttactatat tatgagattt atacaaaagt
      361 tcatcaactt tataacctgc gtattttaaa aagtcattat tggcataaat gatatttccc
      421 ttaagatcag tcttggatgt gataagagca tcttttgcta a
//
LOCUS       DBBXRO010000244          434 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.245, whole genome shotgun sequence.
ACCESSION   DBBXRO010000244 DBBXRO010000000
VERSION     DBBXRO010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.245"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>434
                     /locus_tag="ACJFEZ_001888"
     CDS             <1..>434
                     /locus_tag="ACJFEZ_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF6037 family protein"
                     /protein_id="HGG0917968.1"
                     /translation="DIKNKQMTYCIFNYTHNRIELEIMFDINPKPFKLLIIKKYSNKT
                     LLLDILNGFKLDIFLSKEKYQILLDILDIKGGGATPFSTKKFFEELNSAIPSAIVQYD
                     LNSNLRHIISQIKNFEDADLIYVKHLIDWNKINSGKHVSQKN"
BASE COUNT          179 a           44 c           63 g          148 t
ORIGIN      
        1 aagatataaa aaataagcag atgacttatt gtatatttaa ttatacacac aatagaattg
       61 aattggaaat aatgtttgat ataaacccaa aaccatttaa attgcttata attaaaaagt
      121 attctaataa aactttgttg ctagatattt taaatggctt taagctagat atatttcttt
      181 caaaagaaaa atatcagata ttattagata tattagatat aaaaggtggt ggcgcgactc
      241 cttttagcac aaagaaattt tttgaagaat taaatagcgc aattccatct gcaattgtgc
      301 aatatgattt aaatagtaat ttaagacata tcatttctca aataaaaaat tttgaggatg
      361 ctgatttgat atatgttaaa cacttgatag attggaataa gattaatagc ggtaagcatg
      421 tgtcgcaaaa aaat
//
LOCUS       DBBXRO010000245          377 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.246, whole genome shotgun sequence.
ACCESSION   DBBXRO010000245 DBBXRO010000000
VERSION     DBBXRO010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.246"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            52..>377
                     /locus_tag="ACJFEZ_001889"
     CDS             52..>377
                     /locus_tag="ACJFEZ_001889"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0917969.1"
                     /translation="MLGLNQRKLQKLKRNPKLFFKDAIEKRFLSLNNTYKKYLPKKNK
                     AFTQYTIISAVYNVEKYLDDYFKSIINQRLDFKKNIFMILVDDGSTDNSAQIIKKYQK
                     KYPKNIV"
BASE COUNT          173 a           42 c           45 g          117 t
ORIGIN      
        1 attaatgata catgtaagag tattgttgct aaaataagat aaggggaagg tatgctaggt
       61 ttaaatcaaa gaaaattaca gaaattaaaa agaaatccaa agttgttttt taaagatgct
      121 atagaaaaga gatttttaag cttaaataat acttataaaa aatatcttcc caaaaaaaac
      181 aaagctttta ctcaatatac cataatctca gctgtatata atgtagaaaa atatttagac
      241 gattatttta aatccataat aaaccaaaga cttgatttta aaaaaaatat ttttatgata
      301 cttgtagatg atggctctac tgataattct gcacaaataa tcaaaaaata ccaaaaaaaa
      361 tatcctaaaa atatcgt
//
LOCUS       DBBXRO010000246          376 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.247, whole genome shotgun sequence.
ACCESSION   DBBXRO010000246 DBBXRO010000000
VERSION     DBBXRO010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.247"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            4..>376
                     /locus_tag="ACJFEZ_001890"
     CDS             4..>376
                     /locus_tag="ACJFEZ_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HGG0917970.1"
                     /translation="MNKKELIEEIAKKHHIILDENDPILAVVSANEIIFDDFLKKIDL
                     LFIKHKTDLESYKFNILNEIREYSKNNQETLKDILIQAQTNQNTIKASQEKTEDTKEK
                     KNTNINFWIIAIASQIIFLLVG"
BASE COUNT          179 a           49 c           44 g          104 t
ORIGIN      
        1 aaaatgaata aaaaagaact tattgaagaa attgcaaaaa aacaccatat aatcctagat
       61 gaaaatgatc ctatacttgc agtcgttagt gcaaatgaaa tcatctttga tgatttttta
      121 aaaaaaatag atctactctt tataaaacac aaaacagatt tagaaagcta taaattcaat
      181 atattgaatg aaataagaga atatagcaaa aacaatcaag aaactttaaa agatatttta
      241 atacaagcac agacaaatca aaacacaatt aaggcatcac aagaaaaaac agaagacacc
      301 aaagaaaaga aaaatacaaa tattaatttt tggattatcg ctattgctag ccaaattatt
      361 tttcttcttg ttggtt
//
LOCUS       DBBXRO010000247          363 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.denovo.248, whole genome shotgun sequence.
ACCESSION   DBBXRO010000247 DBBXRO010000000
VERSION     DBBXRO010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.denovo.248"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>363
                     /locus_tag="ACJFEZ_001891"
     CDS             <1..>363
                     /locus_tag="ACJFEZ_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0917971.1"
                     /translation="RKENSPYFFNNENYFIRTLLNKDHLILQSQKNKNIIYVSYHSKE
                     DPLTPANFKQQTMQILKILGYDVSLNLIDENKIDGKFIKNLDHGCGIPDKALFRKELP
                     LMLEKLQGRKSFMQENSIS"
BASE COUNT          154 a           40 c           47 g          122 t
ORIGIN      
        1 gcgtaaagaa aattcacctt atttttttaa taatgaaaat tattttatta gaacattgtt
       61 aaataaggat catttgattt tgcaaagtca aaaaaataaa aatattattt atgtgagtta
      121 tcatagtaaa gaagatcctt taactccagc aaattttaaa caacaaacca tgcaaatatt
      181 aaaaatttta ggttacgatg taagcttaaa tttgatagat gaaaataaaa ttgatggaaa
      241 atttattaaa aatttagatc atggttgtgg tatacctgat aaagccttat ttagaaaaga
      301 acttccttta atgcttgaaa aactacaagg aagaaaatct ttcatgcaag aaaattccat
      361 ctc
//
LOCUS       DBBXRO010000248        10903 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter coli isolate CA21CH-0339-6-4
            SAMN37598956-rid24034413.guided.050, whole genome shotgun sequence.
ACCESSION   DBBXRO010000248 DBBXRO010000000
VERSION     DBBXRO010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598956
            Sequence Read Archive: SRR26214769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477283.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477283.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:23:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,859
            Genes (coding)                    :: 1,822
            CDSs (with protein)               :: 1,822
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 26 of 37
            Pseudo Genes (incomplete)         :: 8 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10903
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598956-rid24034413.guided.050"
                     /isolate="CA21CH-0339-6-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:195"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-14"
                     /collected_by="Quadram Institute Bioscience"
     gene            45..1148
                     /locus_tag="ACJFEZ_001892"
     CDS             45..1148
                     /locus_tag="ACJFEZ_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HGG0917972.1"
                     /translation="MNLFQKNTLLLLSALFLFSACSKEEAPQKQTPPQSVSTMNAKAE
                     NLPLNFTYPAKLVSDYDVIIKPQVSGVIVEKLFKAGDLIKKGQTLFIIEQDKFKASVN
                     SAYGKALMARANFDNASKDYNRSKTLYNKGAISQKEYDSALANFNNTKANLTSARADL
                     ENARIDLAYTEIKAPFDGIVGDALINIGDYVSSSSTELVRITNLNPIYADFYISDTDK
                     LNIVRNTQDGKWDLSNIYADLNLNGEVVKGKLYFIDSVIDANSGTVKAKAIFDNNDST
                     LLPGAFATITSNGFIQKNGFKIPQIAIKQDQNEVYVFLLKEGKVAKAPVHISYQDNEY
                     AIIDKGLQNGDKIILDNFKKIRLGSEVKEVGAQ"
     gene            1148..4270
                     /gene="cmeB"
                     /locus_tag="ACJFEZ_001893"
     CDS             1148..4270
                     /gene="cmeB"
                     /locus_tag="ACJFEZ_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HGG0917973.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLVNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIATTVANPIEDAINGADNMIYMDSTSSSSGTMNLTVYFNIGTDPD
                     QATIDVNNRISAATAKMPDEVKKLGVTVRKTSSTTLAAISMYSSNGSMSAVDVYNYIT
                     LNILDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGATATDVIAAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQSPSEFENIILRTNEDGSFLRLKDVADVEIGSQQ
                     YKSQGRLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEYKIPYDTTKF
                     VIESIKEVIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHEDEKISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFIPVSFISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFLRRNESKPF
                     YIVQKFNDFFDWSTSIFSAGVAYMLKRTIRFVLIFCIMLGAIFYLYKQVPGSLVPEED
                     QGLMIGIINLPSASALHRTISEVDSMSQEILKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLEDWKDRNVSADEIIMELNKKFAPDRNAASVFRGLPPIPGLSITGGFEMYVQNK
                     SGKSYDQIQEDVNKLVAAANQREELYGVRTTLDTSFPQYKLIIDRDKLKHFNLNMQDV
                     FSTMNATIGTYYVNDFTMLGKNFQVNIRAKGDFINTQNALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNIFPAAQIQGQPAPGYTSGQAIEAISQVAQETLSDDYSIAWSG
                     SAYQEVSSKGTGSYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKKIFDAAIEAAKLRFRPIVM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            4263..5741
                     /gene="cmeC"
                     /locus_tag="ACJFEZ_001894"
     CDS             4263..5741
                     /gene="cmeC"
                     /locus_tag="ACJFEZ_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HGG0917974.1"
                     /translation="MNKIISISVIASLSLFISACSLSPNLNIPEANYSLDNKLGALSW
                     EKENNHTLSKEWWKEFDDEKLNHVVDLALQNNNDLKLAFIHMEQAAAQLGIDFSDLLP
                     KLDGSASANRAKTPTNAPNNRTGGVSYGNDFKMGLDLSYEIDLWGRYRDTYRASRSGF
                     KASQYDYEAARLSIVSSVVQTYFNFVNANENEKALKDAYESAQEIYQINYEKFQVGAV
                     GEYEIAQSRANLESTALQYNEAKLNKENYLKALKILTSNDLNDILYQDQAYQVFKLKD
                     FDIPSGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPNLSLTGLLGFESGDLNT
                     LVEAGSRTWSIGGNFVMPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLVAAFGEIRYAL
                     IARKTIRLQYNNAQASELSYKRIYEISKERYDVGEMSLQDYLQARQDWLNATVAFNNT
                     KYSYANSIVNVIKAFGGGFEQGENISKNIEEESKTLDMSFRE"
     gene            complement(5770..6021)
                     /gene="cmeU"
                     /locus_tag="ACJFEZ_001895"
     CDS             complement(5770..6021)
                     /gene="cmeU"
                     /locus_tag="ACJFEZ_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HGG0917975.1"
                     /translation="MDKTKVVENLNALFKQRAEFYSYFDKNISKVGNTEVFDFSNAKD
                     LNAEEVYKQFYHLDYAMRKLLPAIYKAYEVSDSDLNRDF"
     gene            6146..7456
                     /locus_tag="ACJFEZ_001896"
     CDS             6146..7456
                     /locus_tag="ACJFEZ_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HGG0917976.1"
                     /translation="MNLFQNLALKYSHAMMEKSLHKSFNVELLKNPQEKQAKKDKTYM
                     LYAHIPFCHTFCPYCSFHKYYYDEELAKIYFENLRKELILIKDKGFDFSSMYVGGGTT
                     LINENELLKTLELCKKLFNIKEISCESDPNHIIPEKLSMFKGIIDRLSCGIQSFDDEI
                     LKKIARYNKFGSSKQLQEKISKALGILPIFSLDLIFNFPSQTEEQLLNDLKIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVETKDNEFKYYQMIRNFFKDYQQNNGWSFSLEKNQ
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFDLNDYAKMIQEKQNANIAKASFTRKE
                     IIKYIFLTEMFAGKIQIDKFNQTLNCDLEKELFKELLGLKISNAIKKENGALITSEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDSKRLKNKDFINIMKENISSI"
     gene            complement(7490..7942)
                     /gene="hemJ"
                     /locus_tag="ACJFEZ_001897"
     CDS             complement(7490..7942)
                     /gene="hemJ"
                     /locus_tag="ACJFEZ_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HGG0917977.1"
                     /translation="MTEWINEYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAENKNNK
                     GFVDVVKIQERRLYFGIQNPAMIVTVISGSLMLHAHKEVLMVGSGFMHAKLTCATLLI
                     IFHIHNYFCLKALANDTSTRSGRYFRIYNEFPTLMFIIIALMMVIRPF"
     gene            complement(7926..8396)
                     /gene="lspA"
                     /locus_tag="ACJFEZ_001898"
     CDS             complement(7926..8396)
                     /gene="lspA"
                     /locus_tag="ACJFEZ_001898"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HGG0917978.1"
                     /translation="MVKRYKTILIFILVFIAVFAFDQWVKSLTLSGLRWQSEYLDLTY
                     ALNTGVAFSMFSFLEHYLKYLHLALILALVIYLLWQKQFLREHLVAFGMMLGAGCSNL
                     LDRFIHGGVVDMFFWHKWFHFAIFNVADVMINISVALILIKEIFIKKEKNDRMD"
     gene            complement(8389..9726)
                     /gene="glmM"
                     /locus_tag="ACJFEZ_001899"
     CDS             complement(8389..9726)
                     /gene="glmM"
                     /locus_tag="ACJFEZ_001899"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HGG0917979.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSVTNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYYDDKLIQSSKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALYPSNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALFLKEQGK
                     LKSSVVATIMSNGALKEFLNGHGIELDTCNVGDKYVLEKLKVRGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLCKKKSASTILGQIKPYPQLLTNLKISEKKDLDKIKGLK
                     ELKQDLENKNINVLFRYSGTENLIRLLLEAKDAKILEKEMKNVVEFFKKALNG"
     gene            complement(9822..10847)
                     /locus_tag="ACJFEZ_001900"
     CDS             complement(9822..10847)
                     /locus_tag="ACJFEZ_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HGG0917980.1"
                     /translation="MKVKSLLIASLVAFSSLNAQSLIEEAKNSGLVALPKDQKGVDEI
                     LKANGVKATEFTLDKVELGKKLYFEPRLSKSGIISCNTCHNLGLGGADGISAAVGHKW
                     TANPHHLNSPTVYNAVLNTTQFWDGRAGTLADQAKGPIESEAEMATPAKLAVEKIASL
                     PEYVKEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDNFLNGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDENGMVKTPTLRNVVETAP
                     YFHNGAIWKLTDAIKEMGSVQLGIQISDKEAKSIETFLKSLTGTKPAVVYPQLPVSTE
                     KTPKPEL"
BASE COUNT         3799 a         1862 c         1686 g         3556 t
ORIGIN      
        1 aaatattaca atatatttaa attaaaaatt ttaaggcaaa aatcatgaat ttgtttcaaa
       61 aaaataccct tttactctta agtgctttat ttttattttc tgcttgtagc aaagaagaag
      121 cacctcaaaa acaaacaccc cctcaatccg ttagtacaat gaacgctaaa gccgaaaatt
      181 taccgcttaa ctttacttat cctgcaaaac ttgttagtga ttatgatgtt atcatcaaac
      241 ctcaagtaag cggtgttatc gtggagaaac ttttcaaagc gggcgattta attaaaaaag
      301 gacaaacact tttcattatc gaacaagata aatttaaagc aagtgtaaat tcagcttatg
      361 gaaaagcttt aatggctaga gcaaattttg acaatgccag caaagattat aaccgttcaa
      421 aaactcttta taataaagga gcaatctctc aaaaagaata tgatagcgcc ttagcaaatt
      481 ttaacaacac aaaagcaaat ctcaccagtg ctagagcaga cttagaaaat gcacgcattg
      541 atttagctta tactgaaatt aaagctcctt ttgatggtat tgtaggagat gctttgatta
      601 atataggaga ttatgttagc tcctcttcaa ctgaactcgt aagaattaca aacctcaatc
      661 caatctatgc tgatttttac atttcagata cggataaact caatatcgtt cgcaatactc
      721 aagatggaaa atgggattta agcaatatct atgcagattt aaatcttaat ggagaagtag
      781 ttaaaggcaa gctttatttt atagattcag tcattgatgc aaatagcggg acagtaaaag
      841 ctaaagcaat ttttgacaat aatgactcta ctcttttacc aggtgctttt gcaacgatta
      901 cttcaaatgg ttttattcaa aagaatggat ttaaaattcc tcaaattgca atcaagcaag
      961 accaaaatga ggtttatgtt tttctcttaa aagaaggcaa ggttgctaaa gctcctgtgc
     1021 atataagcta tcaagataat gaatatgcta ttattgataa aggactacaa aatggagata
     1081 aaatcatttt ggataacttt aaaaaaatta gactaggtag cgaagttaaa gaagttggag
     1141 cacaataatg ttttctaaat tttttatcga aagacctgtt tttgcttccg ttgtagccat
     1201 tatcatctct ttggctggag ctatcggact tgtaaattta cctatagagc agtatccatc
     1261 tttaacccct cctacggtta aagtaagtgc aacctacacg ggtgcagatg ctcaaaccat
     1321 tgccacaaca gttgcaaacc ctattgaaga tgccatcaat ggtgctgata atatgatata
     1381 tatggattca acctcaagtt cctcaggaac catgaattta accgtgtatt ttaatatcgg
     1441 cacagatcct gatcaagcaa ctatagatgt taataataga atttcagccg caaccgcaaa
     1501 aatgcctgat gaagtaaaaa aactaggagt tacagttaga aaaacttctt ctacaacact
     1561 tgctgctatt tctatgtatt caagcaatgg ttcaatgagt gcagtagatg tatataatta
     1621 tatcacctta aatattttag atgaattaaa aagagttcca ggtgttggag acgctaatgc
     1681 tataggaaat cgtaattatt ctttaagaat ttggctaaaa cctgacttat taaacaaatt
     1741 tggtgcaaca gctaccgatg ttatcgcagc cgtcaatgat caaaatgctc aatacgccac
     1801 aggtaaaatc ggtgaagaac ctgtaactca aaaatcaccc tatgtttatt ctatcaccat
     1861 gcaaggaaga ttgcaaagcc cgagtgaatt tgaaaatatt atcttaagaa ccaatgaaga
     1921 cggttctttt ttaagattaa aagatgtagc agatgttgag ataggctctc aacaatataa
     1981 atctcaaggg cgattaaatg gaaatgatgc agttccaatt atgatcaatc ttcaatcagg
     2041 agcaaatgca ctcaatacag caaaacttgt agaagctaaa atgcaagaac tatcaaagag
     2101 ctttcctgag ggtttagaat ataagattcc ttatgatacg actaaatttg ttatcgagtc
     2161 tattaaagaa gttataaaaa cctttgttga agcgttgatt ttggttatta ttgttatgta
     2221 tatgttctta aagaacttcc gctcgacact catacctatg atcgctgttc ctgtttcatt
     2281 gctaggaact tttgcaggac tttatttgtt aggatttagt ataaatcttt tgacattatt
     2341 tgccctaata ctagccatag gtatagtcgt agatgatgct attattgtgg ttgaaaatat
     2401 agataggatt ttacacgaag atgaaaagat cagcgttaaa gatgctgcca tccaagcaat
     2461 gcaagaagta agttcacctg taatttcaat tgttcttgtg ctttgtgctg tttttatacc
     2521 tgtgtctttt atttcaggct ttgtgggaga aattcaaaaa caatttgcgc tcactttggc
     2581 tatatctgta accatatcag gttttgtagc tcttacttta acaccttctt tatgtgcact
     2641 ctttttaaga cgcaatgaaa gcaagccttt ttatatcgtt caaaaattta atgatttctt
     2701 tgactggagc acttctatat ttagtgcagg cgttgcttat atgcttaaaa gaaccattcg
     2761 ttttgttttg attttctgta tcatgctcgg agcaattttt tatctttata aacaagttcc
     2821 tggctctttg gttcctgaag aagatcaagg tttaatgata ggtattataa accttccttc
     2881 ggcttcagct ctacatagaa cgatctcgga agttgactct atgagtcaag aaattctaaa
     2941 aaccaatggc gtaaaagatg ctatggctat gataggtttt gatttattta caagctcact
     3001 taaagaaaat gccgctgcaa tgtttatagg gcttgaagat tggaaagata gaaatgtaag
     3061 cgctgatgaa atcatcatgg agcttaataa aaaatttgcc cctgatcgca atgctgcaag
     3121 tgtatttaga ggattgcctc ctatacctgg gctaagtatc acgggtggtt ttgaaatgta
     3181 tgtgcaaaat aaaagcggaa aaagctacga tcaaattcaa gaagatgtaa ataaacttgt
     3241 agcagcagcc aatcaaagag aggaattata tggggttcga actactcttg atacgagctt
     3301 tcctcaatat aaactcatca ttgatagaga taaactaaag cattttaatt taaatatgca
     3361 agatgttttc agtacaatga atgcaaccat tggaacatat tatgttaatg attttactat
     3421 gcttggtaaa aattttcaag tcaatattcg cgcaaaagga gattttataa atacccaaaa
     3481 tgcattgaaa aatatttttg tgcgctcaaa tgatggaaaa atgataccac ttgactcttt
     3541 cttaactcta caaagaagtt cagggccaga tgatgtaaaa cgttttaata ttttcccagc
     3601 agcacaaata caaggacaac ctgctccagg atacacttca ggacaagcca tagaagcgat
     3661 ttcccaagta gcacaagaaa ctttaagtga tgattactct atagcttgga gtggttcagc
     3721 ctatcaagaa gtttcaagca agggaacagg gagctatgcc tttgctttgg gtatggtgtt
     3781 tgtattctta atcctagcag cacaatatga aagatggctt atacctttag ctgttgttac
     3841 agctgtacct tttgccgttt ttggttcgtt tttacttgta tacttaagag gatttactaa
     3901 tgatatatat tttcaaaccg gactcttact tttaattgga ctttcagcta agaatgctat
     3961 tttgatcgtt gaatttgcta tggaagaacg ctttaagaaa ggtaagaaaa tatttgatgc
     4021 agctatcgaa gctgcaaaac ttcgctttag gccgatagtt atgacttctt tagcttttac
     4081 ttttggggtt ttaccaatga tttttgcaac tggagcagga agtgcttcaa gacattcttt
     4141 agggacaggg cttattggtg gaatgatagc tgcttctact ttagctatat tctttgtacc
     4201 tttatttttc tatcttttag aaaatttcaa cgaatggcta gataagaaaa ggggtaaagt
     4261 tcatgaataa aataatttca ataagtgtta tagcaagctt aagccttttt atttcagctt
     4321 gttctttaag tccaaattta aatatcccag aagcaaatta tagtcttgat aataaactgg
     4381 gcgccctatc ttgggaaaaa gaaaacaatc atactctttc taaagaatgg tggaaagaat
     4441 ttgatgatga gaaattaaat cacgtagttg atttagctct tcagaacaat aatgatttaa
     4501 aacttgcttt tattcatatg gaacaagctg ctgcccaatt aggcatagat tttagtgatt
     4561 tattaccaaa attagatggt agcgctagtg caaatcgtgc aaaaacacct acaaatgctc
     4621 caaacaaccg cactggggga gtaagctatg gcaatgattt taaaatggga ctggatttaa
     4681 gctatgaaat tgatctttgg ggaagatacc gcgatactta tcgcgcttca agatcaggct
     4741 ttaaagccag tcagtatgat tatgaagctg cgagactttc tatagtttca agcgtggttc
     4801 agacttattt taattttgta aatgcaaatg aaaatgaaaa agctttaaaa gatgcttatg
     4861 aatctgcaca agaaatttat caaattaatt atgaaaaatt tcaagtagga gcagtaggag
     4921 aatacgaaat cgcgcaatca agagcaaatt tagaaagtac tgctttacaa tacaatgaag
     4981 caaaattaaa taaagaaaac tatcttaaag ctttaaaaat tctaacttca aatgatttaa
     5041 acgatattct ttatcaagat caagcttatc aggtttttaa actcaaagat tttgatatac
     5101 cgagcggaat ttcaagcact atactcttgc agcgtcctga tattggatct tctttagaaa
     5161 aacttactca acaaaattat ctagtaggag tagctcgcac agctttcttg cctaatcttt
     5221 ctttaacagg cttattagga tttgaaagcg gggatttaaa tacacttgtg gaagcgggct
     5281 ctaggacttg gagtataggt gggaatttcg taatgccaat tttccactgg ggagaaattt
     5341 atcaaaatgt gaatttagca aaactcaaca aagatgaagc ttttgtaaat tatcaaaata
     5401 ccttagttgc agcttttgga gaaattcgct atgctttaat tgcaagaaag actattcgct
     5461 tgcaatacaa taacgcacaa gcaagcgaat tatcctacaa aagaatttat gaaataagta
     5521 aagagcgtta tgatgtgggc gaaatgtctt tgcaagacta tctacaagcg cgtcaagact
     5581 ggttaaatgc tacagttgct tttaataata ccaaatattc ttatgctaat tctatagtca
     5641 atgttatcaa agcttttggt ggcggatttg aacaaggtga aaatatcagc aaaaatatag
     5701 aagaagaatc aaaaacttta gatatgtcct ttagagagta aaacttactc tctaaattag
     5761 agcttatttt taaaaatctc tatttaaatc agaatcacta acctcatatg ctttataaat
     5821 agctggtaat aattttctca tcgcataatc taaatgataa aattgcttat aaacttcctc
     5881 tgcatttaag tccttagcat tgctaaagtc aaatacttca gtattgccaa cttttgaaat
     5941 attcttatca aaataagaat aaaattccgc cctttgttta aacaatgcgt ttaaattttc
     6001 tactactttt gttttatcca taagccatcc tttctaatta ttttgaaagt tatagcattt
     6061 ttttgctaaa aataaaaaaa atttacactt gatttaataa aaaattgata aagttatatt
     6121 atattttcta ctttaaggtg ggttaatgaa tttatttcaa aatttggctt taaaatattc
     6181 tcatgctatg atggaaaaat ctctacataa aagtttcaat gtcgaacttt tgaaaaatcc
     6241 tcaagaaaaa caagccaaaa aagataaaac ttatatgctt tatgctcaca tacccttttg
     6301 ccataccttt tgtccttatt gtagttttca taaatactat tatgatgagg aattggctaa
     6361 aatttatttt gaaaatttaa gaaaagagct tatacttata aaagataaag gttttgattt
     6421 tagctcaatg tatgtagggg gcggaacaac attgattaat gaaaatgaat tactaaaaac
     6481 tctagaactt tgtaaaaaac ttttcaatat caaagaaatt tcttgcgaaa gcgatcctaa
     6541 tcatataatt cctgaaaaac tctctatgtt taaaggtata atcgatcgtt taagctgtgg
     6601 aattcaaagt tttgatgatg aaattttaaa aaaaatagca agatataata aatttggttc
     6661 ttctaaacaa ttacaagaaa aaatttcaaa agctttggga attttgccaa tttttagcct
     6721 tgatttaatt tttaatttcc cctcacaaac agaagaacag cttttaaatg atttaaaaat
     6781 cgctaaaaat ttagctcctc aacaaatcac aacctatcct ttaatgaaat ccaatctaac
     6841 caaagacaat atagccaaaa gtcttggtgt tgaaactaaa gataatgaat ttaaatacta
     6901 tcaaatgata cgaaattttt tcaaggatta tcagcaaaat aatggctgga gtttttcttt
     6961 agaaaaaaat caactcaatg atgaatatgt aagctctcac catgaatatt taggcgttgg
     7021 aagtggagct tttagctttt tagatgggga gttgcttatc aatgcttttg atttaaatga
     7081 ttatgcaaag atgatacaag aaaaacaaaa tgccaatata gcaaaagcga gttttacacg
     7141 aaaagagatt atcaaataca tatttttaac tgaaatgttt gcagggaaaa tacaaattga
     7201 taaattcaat caaaccctta attgtgatct tgaaaaagaa ctcttcaaag aacttttagg
     7261 acttaaaata agcaatgcta tcaaaaaaga aaatggcgcc ttaatcacaa gtgaatttgg
     7321 acagtatctc tttgtggtct taatgaagga tttttacaca ggaatggatc ttgtgcgcgc
     7381 ggtatttaga gatagtaagc gcttaaaaaa taaagatttt atcaatataa tgaaagaaaa
     7441 tataagttct atttaatttc ttttttttga aattaaatag aaatgaaaat taaaacggac
     7501 gaatcaccat cattaaagca atgataataa acattaaagt aggaaattca ttataaattc
     7561 taaaatatct tccgcttctt gtagaagtat cattcgccaa agcttttaag caaaaataat
     7621 tatgtatatg aaaaatgatt aaaagcgtag cacaggtaag ttttgcatgc ataaagccag
     7681 aacccaccat caaaacttct ttatgagcat gtaacattaa actcccacta ataaccgtta
     7741 ctatcatcgc tggattttgt ataccaaaat aaagtcttct ttcttgtatc tttacaacat
     7801 caacaaaacc tttattgttt ttattttctg catgatatac aaacaaacga ggcaaataaa
     7861 aaagtcctgc catccaagaa acaaatgcta aataatgcac ccatttaatc caaaaataat
     7921 actcattaat ccattctgtc atttttttcc ttttttataa aaatttcttt tattaagatt
     7981 aaggcaacgc ttatgtttat catcacatct gctacattaa aaatagcaaa atgaaaccat
     8041 ttatgccaaa aaaacatatc cactactccc ccgtgtataa aacggtcaag caaattcgaa
     8101 caccccgccc ctagcatcat accaaaagcc actaaatgtt ctcttaagaa ttgtttttgc
     8161 cacaaaaggt atataacaag cgccaatatc aaggctaaat gtaaatattt taaataatgc
     8221 tctaaaaaac taaacataga aaaagcaact cctgtgttta gagcataagt taaatccaaa
     8281 tactcacttt gccaacgcaa acccgataaa gttaaagatt ttacccactg atcaaaagca
     8341 aaaactgcaa taaaaactaa aatgaagatc aagatagttt tatatctttt aaccatttaa
     8401 tgctttcttg aaaaattcaa ctacattttt catttctttt tctaaaattt tagcatcttt
     8461 agcttctagt aaaagtctga tcaaattttc tgttccagaa tagcgaaata acacattaat
     8521 atttttattt tccaaatctt gttttaattc cttcaaacct ttaattttat ccaaatcttt
     8581 tttttctgaa attttaagat tggttaaaag ttgaggataa ggtttgattt gtcctaaaat
     8641 agtacttgcg gactttttct tgcaaagcat caaagcacta aattgcaaag ctgctataag
     8701 accatcgcct gtttttgcat aatcgctaaa aataatatgc ccactttgct ctccgccaaa
     8761 gtttccaccc ctaactttta atttctcaag tacatattta tcgcctacat tacaagtatc
     8821 gagctctatg ccatgtccat ttaaaaattc tttcaaagcc ccattgctca tgatagtagc
     8881 taccacactg gattttaatt tgccctgttc ttttaaaaaa agagctaaaa ctccaagcag
     8941 gctatctcca tttgctactt cacccttttc atctaccact accaaacgat ccgcatctcc
     9001 atcaaaagca aaaccaacat ctgcacgcaa acgctttact tcagcggcta aatttgaagg
     9061 atacaaggct ccacaatttt cattgatatt aagcccatta ggtttatcac tcatcactat
     9121 aacttcagct cccagttctt taaaaacagt cggagctacc ttataagccg ctccatgagc
     9181 tacatctaaa actacacgca atgattttag agttaaatcc ttagggaagg aattcttaat
     9241 agaaacaata tatcttccta taacatcatc aattctttta gcttggccaa ttttctccat
     9301 atcaacttta gagctttgga taagcttatc atcataataa atttcttcaa tctttttttc
     9361 tatatcttcg ctaagcttat tcccatgtgc atcaaaaaat ttaatcccgt tatcataata
     9421 aggattgtgt gaagctgaaa tcataatacc cgcatcacaa cgcatatctt cagttaaaaa
     9481 tgcaattgca ggtgttggca tagggcctat ttgtatcaca ttatatccta tagaagtaag
     9541 acctgaaaca atagcatttt ctatcatata accacttctt cttgtatctt tacctactaa
     9601 aatattattt gtaacactct tatctttaaa ataaattcca gcggccatag caagacgcat
     9661 agctaaaaaa ctatctaaaa attcgcccgc ttttccacga acgccatctg tcccaaaaag
     9721 tttcatcatt aaacctttct caatgaaatt ctagaaatta tagcaaagct aggataaaga
     9781 aatttaaaca aaccctaaaa agatttaggg tttgataagc cttatagttc aggctttgga
     9841 gttttttctg tagaaacagg gagttgagga taaaccactg ctggtttagt tccagttaaa
     9901 gattttaaga aagtttctat actttttgcc tctttatcag aaatttgaat gccaagttgc
     9961 acactaccca tttctttaat tgcatcggtt aatttccata tcgcaccatt gtggaaatat
    10021 ggagctgtct caactacatt tcttaaagtt ggagttttaa ccataccatt ttcatctcct
    10081 ttaaaatcac ccaaatttgc aaatttatac ttacctgcaa cctcaaatgc ttgcatattt
    10141 ccacctaaat tcacaccatt atgacaagct acacaacctt tgtcaatgaa aagttttaaa
    10201 cctttttgct cctctttagt taaagctttt tcatctccat ttaagaaatt atcaaagcga
    10261 gatggagtga ttaaagttct ttcaaaattt gctatcgcat cagcaatatt gtcaaaattc
    10321 acaccgcttt tgccataaat tttcttaaat tctttaacat attcaggtaa agaagcgatt
    10381 ttttctacag ctaattttgc tggagttgcc atttcagctt cagattcaat aggtcctttg
    10441 gcctgatccg ctaaagttcc tgcacgccca tcccaaaatt gagtcgtgtt taaaacagca
    10501 ttatatacag ttggggaatt taaatgatga gggtttgcag tccatttatg tcccactgcc
    10561 gcactaatac catcagctcc accaagtcct agattgtgac aggtattaca tgaaataatt
    10621 ccactttttg aaaggcgagg ctcaaaataa agttttttac caagctcaac tttatcaaga
    10681 gtaaattcag tagcctttac tccatttgct ttcaaaatct catccacgcc tttttgatct
    10741 tttggtaagg caactaaacc tgaattttta gcctcttcta taagactttg agcatttaaa
    10801 cttgaaaaag caactaatga tgcaatcaat aacgatttga ctttcattta caaactcctt
    10861 tacttttaga tataaactta aactaaataa tatagcttta tta
//
